HHsearch alignment for GI: 254780799 and conserved domain: PRK13830
>PRK13830 conjugal transfer protein TrbE; Provisional.
Probab=96.06 E-value=0.0085 Score=40.58 Aligned_cols=212 Identities=19% Similarity=0.282 Sum_probs=108.9
Q ss_pred HHCCCCCCCC-EEEEECC--CCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCH-HHH------HHCCCC
Q ss_conf 2104566666-6785410--02023553047740679999999999982995784788852310-011------102770
Q gi|254780799|r 436 INLGKSIEGK-PIIADLA--RMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKM-LEL------SVYDGI 505 (806)
Q Consensus 436 iaLGKdI~G~-pvv~DLa--kMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~-vEl------s~Y~~i 505 (806)
T Consensus 435 p~l~~t~sG~TPf~fN~H~~dvGHtlIiGpTGsGKTvll~fl-~aq~~ky~~--~~vf~FDKd~s~~i~~~a~GG~y~~l 511 (818)
T PRK13830 435 PPLMQVASGSTPFRLNLHVDDVGHTLIFGPTGSGKSTLLALI-AAQFRRYAG--AQIFAFDKGRSMLPLTLAAGGDHYEI 511 (818)
T ss_pred CCEEEECCCCCCEEEECCCCCCCEEEEECCCCCCHHHHHHHH-HHHHHHCCC--CEEEEECCCCCHHHHHHHHCCEEEEE
T ss_conf 614861489975356278898650589899999889999999-999864279--83899748876899999809925873
Q ss_pred ---------HHHHCC--CCCCHHHHHHHHHHHHHH---------------HHHHHHHHHHCCCCCHHHHHH-----HHHH
Q ss_conf ---------343122--334304566899999999---------------999999998708996899999-----9998
Q gi|254780799|r 506 ---------PNLLTP--VVTNPQKAVTVLKWLVCE---------------MEERYQKMSKIGVRNIDGFNL-----KVAQ 554 (806)
Q Consensus 506 ---------PHLl~p--VvTd~~kA~~aL~w~V~E---------------Me~RY~l~a~~~vRni~~yN~-----k~~~ 554 (806)
T Consensus 512 ~~~~~~~~~~~~f~Pl~~~~t~~~~~fl~~wl~~l~~~~g~~~tp~~~~~i~~a~~~~~~~~~r~l~~~~~~~~~~~l~~ 591 (818)
T PRK13830 512 GGDDAEEGRALAFCPLSELSTDADRAWAAEWIETLVALQGVTITPDHRNAISRQIGLMASARGRSLSDFVSGVQMREIKD 591 (818)
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHH
T ss_conf 36777788877879888899857779999999999984798789999999999998510365580988864357578999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCC------CCCCCC----------C-----------CCCCCCEEEEEHHHHHHHHHHCC
Q ss_conf 87447866775446776545432------223322----------3-----------23469868776344688887321
Q gi|254780799|r 555 YHNTGKKFNRTVQTGFDRKTGEA------IYETEH----------F-----------DFQHMPYIVVVIDEMADLMMVAR 607 (806)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~----------~-----------~~~~lp~ivviiDElaDlmm~~~ 607 (806)
T Consensus 592 ~L~~-w~~~G~~g~~fD~~~D~l~~~~~~~fe~~~ll~~~~~~~~Pvl~Ylf~rie~~lDGrp-~li~lDE~W~~L---~ 666 (818)
T PRK13830 592 ALHH-YTVDGPMGQLLDAEEDGLTLGAFQTFEIEQLMNMGERNLVPVLTYLFRRIEKRLTGAP-SLIILDEAWLML---G 666 (818)
T ss_pred HHHH-HHCCCCCEECCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC-EEEEHHHHHHHH---C
T ss_conf 9998-7069972504478766757566417855300447742079999999999997507991-799767648761---8
Q ss_pred CHH-HHHHHHHHHHHHHCCEEEEEEECCCCCCC----CCHHHHHCCCCEEEEEE
Q ss_conf 005-88999999866414237999965777535----54355411025158764
Q gi|254780799|r 608 KDI-ESAVQRLAQMARASGIHVIMATQRPSVDV----ITGTIKANFPTRISFQV 656 (806)
Q Consensus 608 ~~v-e~~i~rlaq~ara~GiHli~aTqrPsvdv----itg~ikan~p~riaf~v 656 (806)
T Consensus 667 ~~~F~~~i~~wlkt~RK~N~~vv~aTQS~~-d~~~S~I~~~iveq~~T~IfLPN 719 (818)
T PRK13830 667 HPVFRDKIREWLKVLRKANCAVVLATQSIS-DAERSGIIDVLKESCPTKICLPN 719 (818)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHCCCHHHHHHHHCCEEEECCC
T ss_conf 989999999999999863977999778889-98659648999986886698668