HHsearch alignment for GI: 254780799 and conserved domain: PRK13853

>PRK13853 type IV secretion system protein VirB4; Provisional.
Probab=96.52  E-value=0.0054  Score=42.04  Aligned_cols=213  Identities=19%  Similarity=0.296  Sum_probs=107.3

Q ss_pred             CHHHCCCCCCCCEEEEECC--CCCEEEEEECCCCHHHHHHHHHHHHHHHHCCH-HHEEEEEECCCHH-HH------HHC-
Q ss_conf             0021045666666785410--02023553047740679999999999982995-7847888523100-11------102-
Q gi|254780799|r  434 LAINLGKSIEGKPIIADLA--RMPHLLIAGTTGSGKSVAINTMILSLLYRMTP-AQCRLIMIDPKML-EL------SVY-  502 (806)
Q Consensus       434 L~iaLGKdI~G~pvv~DLa--kMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P-~evkliliDPK~v-El------s~Y-  502 (806)
T Consensus       404 ~al~~~~T~~gtPf~fn~H~~d~GHt~I~G~TGsGKTtll~fL~aq-~~ky~~~~~~~~~~fDkd~s~~i~~~a~GG~y~  482 (789)
T PRK13853        404 NAIARFRTNGGTPFDYIPHEHDVGMTAIFGPIGRGKTTLMTFILAM-LEQSMVDRAGAVVFFDKDRGGELLVRATGGTYL  482 (789)
T ss_pred             CCCEEEECCCCCCEEEECCCCCCCCEEEECCCCCCHHHHHHHHHHH-HHHHHCCCCCEEEEEECCCCHHHHHHHHCCEEE
T ss_conf             8753425499982586378788774488789999889999999999-997422357708999588638999998298776


Q ss_pred             ---CCCHHHHCCCC--CC-HHHHHHHHHHHHHHHHHH---------H--------HHHH-HCCCCCHHHHHH--------
Q ss_conf             ---77034312233--43-045668999999999999---------9--------9998-708996899999--------
Q gi|254780799|r  503 ---DGIPNLLTPVV--TN-PQKAVTVLKWLVCEMEER---------Y--------QKMS-KIGVRNIDGFNL--------  550 (806)
Q Consensus       503 ---~~iPHLl~pVv--Td-~~kA~~aL~w~V~EMe~R---------Y--------~l~a-~~~vRni~~yN~--------  550 (806)
T Consensus       483 ~i~~g~~tg~nPl~~l~~t~~~~~fl~~wl~~l~~~~g~~~lt~~~~~~i~~av~~~~~~~~~~r~ls~l~~~l~~~~~~  562 (789)
T PRK13853        483 ALRRGVPSGLAPLRGLENTAASRDFLREWIVALIESDGRGGISPEENRRLVRGIHRQLSFDPDMRSLAGLREFLLHGPAE  562 (789)
T ss_pred             ECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHCCCCCC
T ss_conf             12699956848765689986889999999999997259999999999999999999860883107898999984558821


Q ss_pred             ----HHHHHHHCCCCCCCCCCCCCCCCCCCC-------CCCCC--------------------CCCCCCCCEEEEEHHHH
Q ss_conf             ----999887447866775446776545432-------22332--------------------23234698687763446
Q gi|254780799|r  551 ----KVAQYHNTGKKFNRTVQTGFDRKTGEA-------IYETE--------------------HFDFQHMPYIVVVIDEM  599 (806)
Q Consensus       551 ----k~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~--------------------~~~~~~lp~ivviiDEl  599 (806)
T Consensus       563 ~~~~rL~~w~~~g~~-----gwlfD~~~D~l~~~~~~~gfd~~~ll~~~~~~~pvl~YLf~rie~~ldGrp~-ii~lDE~  636 (789)
T PRK13853        563 GAGARLQRWCRGNAL-----GWAFDGEVDEVKLDPSITGFDMTHLLEYEEVCAPAAAYLLHRIGAMVDGRRF-VMSCDEF  636 (789)
T ss_pred             HHHHHHHHHHCCCCE-----EEECCCCCCCCCCCCCEEEEECHHHCCCCCHHHHHHHHHHHHHHHHHCCCCE-EEEEHHH
T ss_conf             699999998549970-----4403686546588787799861785278512899999999999986069966-9994566


Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCC---CCCCCHHHHHCCCCEEEEE
Q ss_conf             8888732100588999999866414237999965777---5355435541102515876
Q gi|254780799|r  600 ADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPS---VDVITGTIKANFPTRISFQ  655 (806)
Q Consensus       600 aDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPs---vdvitg~ikan~p~riaf~  655 (806)
T Consensus       637 w~~l~--~~~f~~~i~~wlkt~RK~N~~vv~aTQs~~d~~~s~i~~~i~e~~~T~I~LP  693 (789)
T PRK13853        637 RAYLL--NPKFAAVVDKFLLTVRKNNGMLILATQQPEHVLESPLGASLVAQCMTKIFYP  693 (789)
T ss_pred             HHHHC--CHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHCCCHHHHHHHHCCEEEECC
T ss_conf             67646--9999999999999998749089996489999863827899998688679888