HHsearch alignment for GI: 254780799 and conserved domain: PRK13853
>PRK13853 type IV secretion system protein VirB4; Provisional.
Probab=96.52 E-value=0.0054 Score=42.04 Aligned_cols=213 Identities=19% Similarity=0.296 Sum_probs=107.3
Q ss_pred CHHHCCCCCCCCEEEEECC--CCCEEEEEECCCCHHHHHHHHHHHHHHHHCCH-HHEEEEEECCCHH-HH------HHC-
Q ss_conf 0021045666666785410--02023553047740679999999999982995-7847888523100-11------102-
Q gi|254780799|r 434 LAINLGKSIEGKPIIADLA--RMPHLLIAGTTGSGKSVAINTMILSLLYRMTP-AQCRLIMIDPKML-EL------SVY- 502 (806)
Q Consensus 434 L~iaLGKdI~G~pvv~DLa--kMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P-~evkliliDPK~v-El------s~Y- 502 (806)
T Consensus 404 ~al~~~~T~~gtPf~fn~H~~d~GHt~I~G~TGsGKTtll~fL~aq-~~ky~~~~~~~~~~fDkd~s~~i~~~a~GG~y~ 482 (789)
T PRK13853 404 NAIARFRTNGGTPFDYIPHEHDVGMTAIFGPIGRGKTTLMTFILAM-LEQSMVDRAGAVVFFDKDRGGELLVRATGGTYL 482 (789)
T ss_pred CCCEEEECCCCCCEEEECCCCCCCCEEEECCCCCCHHHHHHHHHHH-HHHHHCCCCCEEEEEECCCCHHHHHHHHCCEEE
T ss_conf 8753425499982586378788774488789999889999999999-997422357708999588638999998298776
Q ss_pred ---CCCHHHHCCCC--CC-HHHHHHHHHHHHHHHHHH---------H--------HHHH-HCCCCCHHHHHH--------
Q ss_conf ---77034312233--43-045668999999999999---------9--------9998-708996899999--------
Q gi|254780799|r 503 ---DGIPNLLTPVV--TN-PQKAVTVLKWLVCEMEER---------Y--------QKMS-KIGVRNIDGFNL-------- 550 (806)
Q Consensus 503 ---~~iPHLl~pVv--Td-~~kA~~aL~w~V~EMe~R---------Y--------~l~a-~~~vRni~~yN~-------- 550 (806)
T Consensus 483 ~i~~g~~tg~nPl~~l~~t~~~~~fl~~wl~~l~~~~g~~~lt~~~~~~i~~av~~~~~~~~~~r~ls~l~~~l~~~~~~ 562 (789)
T PRK13853 483 ALRRGVPSGLAPLRGLENTAASRDFLREWIVALIESDGRGGISPEENRRLVRGIHRQLSFDPDMRSLAGLREFLLHGPAE 562 (789)
T ss_pred ECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHCCCCCC
T ss_conf 12699956848765689986889999999999997259999999999999999999860883107898999984558821
Q ss_pred ----HHHHHHHCCCCCCCCCCCCCCCCCCCC-------CCCCC--------------------CCCCCCCCEEEEEHHHH
Q ss_conf ----999887447866775446776545432-------22332--------------------23234698687763446
Q gi|254780799|r 551 ----KVAQYHNTGKKFNRTVQTGFDRKTGEA-------IYETE--------------------HFDFQHMPYIVVVIDEM 599 (806)
Q Consensus 551 ----k~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~--------------------~~~~~~lp~ivviiDEl 599 (806)
T Consensus 563 ~~~~rL~~w~~~g~~-----gwlfD~~~D~l~~~~~~~gfd~~~ll~~~~~~~pvl~YLf~rie~~ldGrp~-ii~lDE~ 636 (789)
T PRK13853 563 GAGARLQRWCRGNAL-----GWAFDGEVDEVKLDPSITGFDMTHLLEYEEVCAPAAAYLLHRIGAMVDGRRF-VMSCDEF 636 (789)
T ss_pred HHHHHHHHHHCCCCE-----EEECCCCCCCCCCCCCEEEEECHHHCCCCCHHHHHHHHHHHHHHHHHCCCCE-EEEEHHH
T ss_conf 699999998549970-----4403686546588787799861785278512899999999999986069966-9994566
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCC---CCCCCHHHHHCCCCEEEEE
Q ss_conf 8888732100588999999866414237999965777---5355435541102515876
Q gi|254780799|r 600 ADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPS---VDVITGTIKANFPTRISFQ 655 (806)
Q Consensus 600 aDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPs---vdvitg~ikan~p~riaf~ 655 (806)
T Consensus 637 w~~l~--~~~f~~~i~~wlkt~RK~N~~vv~aTQs~~d~~~s~i~~~i~e~~~T~I~LP 693 (789)
T PRK13853 637 RAYLL--NPKFAAVVDKFLLTVRKNNGMLILATQQPEHVLESPLGASLVAQCMTKIFYP 693 (789)
T ss_pred HHHHC--CHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHCCCHHHHHHHHCCEEEECC
T ss_conf 67646--9999999999999998749089996489999863827899998688679888