HHsearch alignment for GI: 254780799 and conserved domain: TIGR01420
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=95.37 E-value=0.011 Score=39.70 Aligned_cols=32 Identities=41% Similarity=0.720 Sum_probs=23.5
Q ss_pred EEEECCCCC--EEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 785410020--23553047740679999999999
Q gi|254780799|r 447 IIADLARMP--HLLIAGTTGSGKSVAINTMILSL 478 (806)
Q Consensus 447 vv~DLakMP--HLLIAGtTGSGKSV~iN~iI~Sl 478 (806)
T Consensus 118 v~~~~a~~~~GLiLVTGPTGSGKSTTlAsmIDyI 151 (350)
T TIGR01420 118 VLRELAERPRGLILVTGPTGSGKSTTLASMIDYI 151 (350)
T ss_pred HHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9999983669938987688986789999999787