HHsearch alignment for GI: 254780799 and conserved domain: TIGR02746
>TIGR02746 TraC-F-type type-IV secretion system protein TraC; InterPro: IPR014117 The proteins in this entry are found in the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The proteins contain the Walker A and B motifs and so are putative nucleotide triphosphatases..
Probab=96.38 E-value=0.0027 Score=44.26 Aligned_cols=333 Identities=18% Similarity=0.190 Sum_probs=189.5
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCC---CCC---CCC---
Q ss_conf 25665457899999974248632899841044244444321478639999978899998863001---210---003---
Q gi|254780799|r 328 SPKVMQNNACTLKSVLSDFGIQGEIVNVRPGPVITLYELEPAPGIKSSRIIGLSDDIARSMSAIS---ARV---AVI--- 398 (806)
Q Consensus 328 s~eeL~~nA~lLE~tL~dFGVe~~Vv~v~pGPVVTrYEi~PApGVKvSKI~nLadDIA~aLsa~s---vRI---apI--- 398 (806)
T Consensus 375 ~~~~~~~~~~~a~~~Fr~~gF~L~~~~~~~~~~vfL~~LPf~~~------~glf~~~~~~~~~~~~~~~N~~~l~Pl~ad 448 (900)
T TIGR02746 375 NPDNLRRDVEAAKSSFRKNGFDLAEDKRIQLQAVFLAALPFALT------EGLFKDLKKAGRVRTLSSANAVNLLPLIAD 448 (900)
T ss_pred CHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHCCCCCHHHHHHHCCCEEEE
T ss_conf 88899999999999998588200305421237899973035631------478898765221343045538661742140
Q ss_pred -CC-------C-CEEEEEECCCCCCEEEEHHHCCCHHHHHCCCCCHHHCCCCCCCCEEEEECCCCCEEEEEECCCCHHHH
Q ss_conf -88-------6-12555302456623873423072134302210002104566666678541002023553047740679
Q gi|254780799|r 399 -PR-------R-NAIGIELPNDIRETVMLRDLIVSRVFEKNQCDLAINLGKSIEGKPIIADLARMPHLLIAGTTGSGKSV 469 (806)
Q Consensus 399 -PG-------K-~~VGIEiPN~~r~~V~lreil~s~~f~~s~~~L~iaLGKdI~G~pvv~DLakMPHLLIAGtTGSGKSV 469 (806)
T Consensus 449 w~Gnnmedrl~~~~~g~l~ptrR~Ql~~~-d~F~~~~-----~--------~i~NYN~----------~~~g~sG~GKSf 504 (900)
T TIGR02746 449 WKGNNMEDRLTLKGSGLLLPTRRGQLSAF-DPFDSDL-----L--------NITNYNI----------AVVGGSGAGKSF 504 (900)
T ss_pred CCCCCHHHHHCCCCCEEEEEECCCEEEEE-EECCCCC-----C--------CCCCCEE----------EEECCCCCCHHH
T ss_conf 26885012204787727752135358778-3033786-----6--------7677148----------997288987168
Q ss_pred HHHHHHHHHH--------------HHCCHHHEEEEEECCC---HHHHHHCC---------CCHHHHCCCCCCHH----HH
Q ss_conf 9999999999--------------8299578478885231---00111027---------70343122334304----56
Q gi|254780799|r 470 AINTMILSLL--------------YRMTPAQCRLIMIDPK---MLELSVYD---------GIPNLLTPVVTNPQ----KA 519 (806)
Q Consensus 470 ~iN~iI~SlL--------------yk~~P~evkliliDPK---~vEls~Y~---------~iPHLl~pVvTd~~----kA 519 (806)
T Consensus 505 ~~Q~~~~~~L~~G~kv~viDvG~Sy~KLC~~lgG~Yie~~~e~~i~LNPFTHL~i~~A~~~~~~~~~~~v~~i~Geqv~~ 584 (900)
T TIGR02746 505 FMQELIVSVLSRGGKVWVIDVGRSYKKLCEMLGGTYIEFSPESTICLNPFTHLDIEEARFDIIDFDGNNVTEIDGEQVDE 584 (900)
T ss_pred HHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHH
T ss_conf 79899999851798489996078848887651871210466776323874446600033322673634677567402889
Q ss_pred HHHHHHHHHHHH----HHHHHHHHCCCCCHHHHHHHHHHH-----HHCCCC---------------------CC---CCC
Q ss_conf 689999999999----999999870899689999999988-----744786---------------------67---754
Q gi|254780799|r 520 VTVLKWLVCEME----ERYQKMSKIGVRNIDGFNLKVAQY-----HNTGKK---------------------FN---RTV 566 (806)
Q Consensus 520 ~~aL~w~V~EMe----~RY~l~a~~~vRni~~yN~k~~~~-----~~~~~~---------------------~~---~~~ 566 (806)
T Consensus 585 ~~~i~~~ia~MAGlDl~P~~~l~~~q~-lmaryCs~l~~AI~~~W~~~g~~a~~tdV~~~L~~~~~e~~~~~~DGir~r~ 663 (900)
T TIGR02746 585 IDQITALIALMAGLDLSPEGGLSDEQE-LMARYCSLLEEAILAAWKEKGNEATITDVADALEQLRLEEEDSENDGIRPRI 663 (900)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHH
T ss_conf 999999999884466684556788889-9999999999999999997122488489999998521331345688601689
Q ss_pred CC----------------CCCCCC------CCCCCC----CCC-CCC---------------------CCCCEEEEEHHH
Q ss_conf 46----------------776545------432223----322-323---------------------469868776344
Q gi|254780799|r 567 QT----------------GFDRKT------GEAIYE----TEH-FDF---------------------QHMPYIVVVIDE 598 (806)
Q Consensus 567 ~~----------------~~~~~~------~~~~~~----~~~-~~~---------------------~~lp~ivviiDE 598 (806)
T Consensus 664 ~~l~~~L~~Yt~~G~YG~~Fn~~~~l~~~~~~vvLEL~eL~~~Dp~l~~~Vl~~L~~~I~~~my~~g~R~~rK-~~~iDE 742 (900)
T TIGR02746 664 KDLGKLLNPYTSNGVYGRYFNGPNNLDFSNRFVVLELEELEDRDPELQAVVLFSLMVRITGEMYLTGDRKRRK-ILIIDE 742 (900)
T ss_pred HHHHHHHHHHHCCCCCEEECCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCE-EEEEHH
T ss_conf 9999873264248712011287775678987688512257577856779999999999987763058897551-676442
Q ss_pred HHHHHH-HCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHH--HHCCCCEEEEEECCCCCCHHHCCCC--CHHH
Q ss_conf 688887-3210058899999986641423799996577753554355--4110251587645866421233886--4578
Q gi|254780799|r 599 MADLMM-VARKDIESAVQRLAQMARASGIHVIMATQRPSVDVITGTI--KANFPTRISFQVSSKIDSRTILGEQ--GAEQ 673 (806)
Q Consensus 599 laDlmm-~~~~~ve~~i~rlaq~ara~GiHli~aTqrPsvdvitg~i--kan~p~riaf~v~s~~dSrtild~~--gae~ 673 (806)
T Consensus 743 AW~Ll~~g~~~~~~~FIE~gyRr~RK~~Ga~~tiTQ~~-----~D~~~dka~~~arA~yaNS---~~~iiL~Q~~~~~~~ 814 (900)
T TIGR02746 743 AWSLLDDGANPQAANFIETGYRRARKYGGAFITITQGI-----EDFYSDKASPEARAAYANS---DWKIILRQSAESIEK 814 (900)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHCCHHHCCCEEEEECCE-----EHHHCCCCCHHHHHHHHCC---CEEEEECCCHHHHHH
T ss_conf 48987427851358988876320111164368996440-----0100034798899988453---300412788647899
Q ss_pred HCCCCCEEEECCCC----CEEEEEECCCCHH
Q ss_conf 65887547736898----3258883348988
Q gi|254780799|r 674 LLGQGDMLYMTGGG----RVQRIHGPFVSDI 700 (806)
Q Consensus 674 Llg~gdml~~~~~~----~~~r~~g~~v~~~ 700 (806)
T Consensus 815 ~~~~~~~~~~~~~~~~i~sl~~~~~~GfSe~ 845 (900)
T TIGR02746 815 LKAENPLQFSPFEKRLIKSLRTAKGAGFSEL 845 (900)
T ss_pred HHHCCCCCCCHHHHHHHHHCCCCCCCHHHHH
T ss_conf 9963898889889999972253566306766