HHsearch alignment for GI: 254780799 and conserved domain: TIGR02759
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD; InterPro: IPR014128 The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM) , .; GO: 0000746 conjugation.
Probab=97.48 E-value=7.4e-05 Score=56.01 Aligned_cols=23 Identities=57% Similarity=0.873 Sum_probs=9.9
Q ss_pred EEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 23553047740679999999999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSL 478 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~Sl 478 (806)
T Consensus 210 h~L~~GTtG~GKs~~lr~LL~~i 232 (613)
T TIGR02759 210 HILIHGTTGSGKSVALRKLLRWI 232 (613)
T ss_pred CEEEECCCCCHHHHHHHHHHHHH
T ss_conf 52664541743899999999999