HHsearch alignment for GI: 254780799 and conserved domain: TIGR02788
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11; InterPro: IPR014155 This entry contains VirB11, a protein that is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer . VirB11 is believed to be an ATPase and is a homologue of the P-like conjugation system TrbB protein and the Flp pilus system protein TadA ..
Probab=94.28 E-value=0.046 Score=35.05 Aligned_cols=62 Identities=31% Similarity=0.418 Sum_probs=47.4
Q ss_pred CCCHHHCCCCCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEEC-CCHHHHHHCCCCHHHHC
Q ss_conf 10002104566666678541002023553047740679999999999982995784788852-31001110277034312
Q gi|254780799|r 432 CDLAINLGKSIEGKPIIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMID-PKMLELSVYDGIPNLLT 510 (806)
Q Consensus 432 ~~L~iaLGKdI~G~pvv~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliD-PK~vEls~Y~~iPHLl~ 510 (806)
T Consensus 151 l~~Ai~~~kn---------------Iii~GGTgSGKTTf~kal~-----~~IP~~ER~iTIED~~E~~~~hhpN~V~L~y 210 (328)
T TIGR02788 151 LRLAIASRKN---------------IIISGGTGSGKTTFLKALV-----KEIPKDERLITIEDTRELFLPHHPNKVHLFY 210 (328)
T ss_pred HHHHHHCCCE---------------EEEEECCCCHHHHHHHHHH-----HCCCCCCCEEEEEEEECCCCCCCCCEEEEEE
T ss_conf 9999873891---------------9999068971899999997-----3276225278885201147888986456553
Q ss_pred CCC
Q ss_conf 233
Q gi|254780799|r 511 PVV 513 (806)
Q Consensus 511 pVv 513 (806)
T Consensus 211 sk~ 213 (328)
T TIGR02788 211 SKG 213 (328)
T ss_pred CCC
T ss_conf 464