HHsearch alignment for GI: 254780799 and conserved domain: cd01122
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.98 E-value=0.0039 Score=43.13 Aligned_cols=142 Identities=21% Similarity=0.334 Sum_probs=74.1
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHH-------HHHCCCCH-HHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 355304774067999999999998299578478885231001-------11027703-4312233430456689999999
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLE-------LSVYDGIP-NLLTPVVTNPQKAVTVLKWLVC 528 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vE-------ls~Y~~iP-HLl~pVvTd~~kA~~aL~w~V~ 528 (806)
T Consensus 33 ~viaarpg~GKT~f~~~~a~~~~~~~g---~~vl~~SlEm~~~~~~~Rlls~~~g~~~~~~~~~~~~~~e---~~~~~~~ 106 (271)
T cd01122 33 IILTAGTGVGKTTFLREYALDLITQHG---VRVGTISLEEPVVRTARRLLGQYAGKRLHLPDTVFIYTLE---EFDAAFD 106 (271)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCC---CEEEEEECCCCHHHHHHHHHHHHHCCCHHHCCCCCCCHHH---HHHHHHH
T ss_conf 999968998699999999999999769---9089997049999999999999829971103446778099---9999999
Q ss_pred HHHH--HHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHC
Q ss_conf 9999--99999870899689999999988744786677544677654543222332232346986877634468888732
Q gi|254780799|r 529 EMEE--RYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVA 606 (806)
Q Consensus 529 EMe~--RY~l~a~~~vRni~~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ivviiDElaDlmm~~ 606 (806)
T Consensus 107 ~~~~~~~l~i~d~~~~~~~~~i~~~ir~~~~~~~----------------------------~--~~vvIDyl-qll~~~ 155 (271)
T cd01122 107 EFEGTGRLFMYDSFGEYSMDSVLEKVRYMAVSHG----------------------------I--QHIIIDNL-SIMVSD 155 (271)
T ss_pred HHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCC----------------------------C--CEEEEEHH-HHCCCC
T ss_conf 9707998088789999889999999999998289----------------------------9--88998317-850367
Q ss_pred CC-------HHHHHHHHHHHHHHHCCEEEEEEEC--CC
Q ss_conf 10-------0588999999866414237999965--77
Q gi|254780799|r 607 RK-------DIESAVQRLAQMARASGIHVIMATQ--RP 635 (806)
Q Consensus 607 ~~-------~ve~~i~rlaq~ara~GiHli~aTq--rP 635 (806)
T Consensus 156 ~~~~~d~~~~i~~i~~~Lk~lAke~~v~Vi~lsQlnR~ 193 (271)
T cd01122 156 ERASGDERKALDEIMTKLRGFATEHGIHITLVSHLRRP 193 (271)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 86773189999999999999999979977999526765