HHsearch alignment for GI: 254780799 and conserved domain: cd01126

>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.

Probab=96.88  E-value=0.0011  Score=47.19  Aligned_cols=40  Identities=18%  Similarity=0.364  Sum_probs=28.2

Q ss_pred             EEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCC
Q ss_conf             6877634468888732100588999999866414237999965777
Q gi|254780799|r  591 YIVVVIDEMADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPS  636 (806)
Q Consensus       591 ~ivviiDElaDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPs  636 (806)
T Consensus       264 ~v~~~lDEf~nl----~-~ip-~l~~~ls~~Rs~Gi~~~~~~Qs~~  303 (384)
T cd01126         264 RVLFLLDEFPLL----G-KLE-TFEKAIAIMAGYGIRLLLIFQSLA  303 (384)
T ss_pred             CEEEEEECHHHC----C-CHH-HHHHHHHHHHCCCEEEEEEEECHH
T ss_conf             559998661101----7-738-899999987428919999995499