HHsearch alignment for GI: 254780799 and conserved domain: cd01127
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=98.03 E-value=6.8e-06 Score=63.78 Aligned_cols=53 Identities=36% Similarity=0.565 Sum_probs=43.4
Q ss_pred CCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHH
Q ss_conf 66666678541002023553047740679999999999982995784788852310011
Q gi|254780799|r 441 SIEGKPIIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLEL 499 (806)
Q Consensus 441 dI~G~pvv~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEl 499 (806)
T Consensus 30 ~i~~~p~p~~~-e~~H~lv~G~tGsGKT~~i~~li~~~~~rg~----~~II~DpkG-e~ 82 (410)
T cd01127 30 TIAGLPFPKDA-EEAHTMIIGTTGTGKTTQIRELLASIRARGD----RAIIYDPNG-GF 82 (410)
T ss_pred EECCCCCCCCH-HHCCEEEECCCCCCHHHHHHHHHHHHHHCCC----EEEEEECCC-HH
T ss_conf 68986278652-0274799889999889999999999998699----099995885-49