HHsearch alignment for GI: 254780799 and conserved domain: cd03270
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=93.91 E-value=0.47 Score=27.56 Aligned_cols=42 Identities=21% Similarity=0.296 Sum_probs=26.9
Q ss_pred EEEEEHHHH-HHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCC
Q ss_conf 687763446-8888732100588999999866414237999965777
Q gi|254780799|r 591 YIVVVIDEM-ADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPS 636 (806)
Q Consensus 591 ~ivviiDEl-aDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPs 636 (806)
T Consensus 158 ~~lliLDEPTsgLD~~~~~~i~~~i~~l----~~~G~Tvi~VsHd~~ 200 (226)
T cd03270 158 GVLYVLDEPSIGLHPRDNDRLIETLKRL----RDLGNTVLVVEHDED 200 (226)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHH----HHCCCEEEEEEECHH
T ss_conf 7168832873337989999999999999----976998999972578