HHsearch alignment for GI: 254780799 and conserved domain: pfam03796
>pfam03796 DnaB_C DnaB-like helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.94 E-value=0.14 Score=31.37 Aligned_cols=41 Identities=29% Similarity=0.424 Sum_probs=30.5
Q ss_pred EEEHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHCCEEEEEEECC
Q ss_conf 7763446888873210--------05889999998664142379999657
Q gi|254780799|r 593 VVVIDEMADLMMVARK--------DIESAVQRLAQMARASGIHVIMATQR 634 (806)
Q Consensus 593 vviiDElaDlmm~~~~--------~ve~~i~rlaq~ara~GiHli~aTqr 634 (806)
T Consensus 132 ~vvvDyl-~l~~~~~~~~~~~r~~~v~~i~~~Lk~lA~e~~i~ii~~sQl 180 (186)
T pfam03796 132 LIVIDYL-QLMQGSKASKSENRQQEISEISRSLKALAKELNIPVIALSQL 180 (186)
T ss_pred EEEEEHH-HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 8997489-863677888775599999999999999999979918997225