HHsearch alignment for GI: 254780799 and conserved domain: pfam04157
>pfam04157 EAP30 EAP30/Vps36 family. This family includes EAP30 as well as the Vps36 protein. Vps36 is involved in Golgi to endosome trafficking. EAP30 is a subunit of the ELL complex. The ELL is an 80-kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity.
Probab=94.60 E-value=0.16 Score=31.09 Aligned_cols=87 Identities=18% Similarity=0.197 Sum_probs=62.3
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEHHHHHHCCCHHHHH
Q ss_conf 348988999999999712897421-1001245566677888887777038999999996598500014222001177899
Q gi|254780799|r 695 PFVSDIEVEKVVSHLKTQGEAKYI-DIKDKILLNEEMRFSENSSVADDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAA 773 (806)
Q Consensus 695 ~~v~~~ev~~v~~~~~~q~~~~y~-~~~~~~~~~~~~~~~~~~~~~d~l~~~a~~~v~~~~~~s~s~lqr~~~igy~raa 773 (806)
T Consensus 129 ~lvSp~Dl~~A~~~l~~Lg~~-~~l~~~~sg~~~---v~s~~~~e~~~~~~~il~~~~~~~~vt~~~l~~~l~ws~~~a~ 204 (219)
T pfam04157 129 ELVSPDDLLKACKKLEKLGLG-FKLVKVGSGVLV---VQSVPDSELSTDQTKILELAEELGGVTASELAEKLGWSIGRAK 204 (219)
T ss_pred CCCCHHHHHHHHHHHHHCCCC-EEEEEECCCCEE---EEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHH
T ss_conf 878999999999999975999-699997797289---9856841046899999999972799489999999798899999
Q ss_pred HHHHHHHHCCCC
Q ss_conf 999999977986
Q gi|254780799|r 774 SIIENMEEKGVI 785 (806)
Q Consensus 774 r~~~~~e~~giv 785 (806)
T Consensus 205 e~L~~~~~~G~l 216 (219)
T pfam04157 205 EVLEKAEKEGLL 216 (219)
T ss_pred HHHHHHHHCCCE
T ss_conf 999999974997