HHsearch alignment for GI: 254780799 and conserved domain: pfam06745

>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=94.89  E-value=0.26  Score=29.40  Aligned_cols=133  Identities=17%  Similarity=0.258  Sum_probs=71.1

Q ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             23553047740679999999999982995784788852310011102770343122334304566899999999999999
Q gi|254780799|r  456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEMEERYQ  535 (806)
Q Consensus       456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~iPHLl~pVvTd~~kA~~aL~w~V~EMe~RY~  535 (806)
T Consensus        21 ~~LI~G~pGsGKT~la~qfl~~ga~~-~ge~~lYi---------s~ee~~~~l~--------~~~~~~g~~~~~~~~~g~   82 (231)
T pfam06745        21 VVLITGGPGTGKTIFGLQFLYNGALE-YGEPGVYV---------TLEEPPEDLR--------ENAKSFGWDLEKLEEEGK   82 (231)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHH-CCCCEEEE---------EECCCHHHHH--------HHHHHCCCCHHHHHHCCC
T ss_conf             99998589725999999999999986-58968999---------8137999999--------999982998589864696


Q ss_pred             ------------HHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHH
Q ss_conf             ------------99870899689999999988744786677544677654543222332232346986877634468888
Q gi|254780799|r  536 ------------KMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLM  603 (806)
Q Consensus       536 ------------l~a~~~vRni~~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ivviiDElaDlm  603 (806)
T Consensus        83 l~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~-----------------------------~~~~-~vVIDsit~l~  132 (231)
T pfam06745        83 LAIIDASTSGIGIAEVKGRFDLEELIERLREAIRE-----------------------------IGAK-RVVIDSITTLF  132 (231)
T ss_pred             EEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-----------------------------HCCC-EEEEECCHHHH
T ss_conf             78986254422210011227999999999999997-----------------------------1998-89997641640


Q ss_pred             HHCC-CHHHHHHHHHHHHHHHCCEEEEEEECCCC
Q ss_conf             7321-00588999999866414237999965777
Q gi|254780799|r  604 MVAR-KDIESAVQRLAQMARASGIHVIMATQRPS  636 (806)
Q Consensus       604 m~~~-~~ve~~i~rlaq~ara~GiHli~aTqrPs  636 (806)
T Consensus       133 ~~~~~~~~r~~l~~l~~~lk~~g~t~l~t~e~~~  166 (231)
T pfam06745       133 YLLKPAMAREILRRLKRVLKKLGVTAIFTSEKPS  166 (231)
T ss_pred             HCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECC
T ss_conf             0588999999999999999976991999982125