HHsearch alignment for GI: 254780799 and conserved domain: pfam06745
>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=94.89 E-value=0.26 Score=29.40 Aligned_cols=133 Identities=17% Similarity=0.258 Sum_probs=71.1
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 23553047740679999999999982995784788852310011102770343122334304566899999999999999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEMEERYQ 535 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~iPHLl~pVvTd~~kA~~aL~w~V~EMe~RY~ 535 (806)
T Consensus 21 ~~LI~G~pGsGKT~la~qfl~~ga~~-~ge~~lYi---------s~ee~~~~l~--------~~~~~~g~~~~~~~~~g~ 82 (231)
T pfam06745 21 VVLITGGPGTGKTIFGLQFLYNGALE-YGEPGVYV---------TLEEPPEDLR--------ENAKSFGWDLEKLEEEGK 82 (231)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH-CCCCEEEE---------EECCCHHHHH--------HHHHHCCCCHHHHHHCCC
T ss_conf 99998589725999999999999986-58968999---------8137999999--------999982998589864696
Q ss_pred ------------HHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHH
Q ss_conf ------------99870899689999999988744786677544677654543222332232346986877634468888
Q gi|254780799|r 536 ------------KMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLM 603 (806)
Q Consensus 536 ------------l~a~~~vRni~~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ivviiDElaDlm 603 (806)
T Consensus 83 l~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~-----------------------------~~~~-~vVIDsit~l~ 132 (231)
T pfam06745 83 LAIIDASTSGIGIAEVKGRFDLEELIERLREAIRE-----------------------------IGAK-RVVIDSITTLF 132 (231)
T ss_pred EEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-----------------------------HCCC-EEEEECCHHHH
T ss_conf 78986254422210011227999999999999997-----------------------------1998-89997641640
Q ss_pred HHCC-CHHHHHHHHHHHHHHHCCEEEEEEECCCC
Q ss_conf 7321-00588999999866414237999965777
Q gi|254780799|r 604 MVAR-KDIESAVQRLAQMARASGIHVIMATQRPS 636 (806)
Q Consensus 604 m~~~-~~ve~~i~rlaq~ara~GiHli~aTqrPs 636 (806)
T Consensus 133 ~~~~~~~~r~~l~~l~~~lk~~g~t~l~t~e~~~ 166 (231)
T pfam06745 133 YLLKPAMAREILRRLKRVLKKLGVTAIFTSEKPS 166 (231)
T ss_pred HCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECC
T ss_conf 0588999999999999999976991999982125