HHsearch alignment of GI: 254780799 and MMDB domain: 1ls1_A_93-277
>1ls1_A (A:93-277) Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus}
Probab=93.82 E-value=0.22 Score=29.48 Aligned_cols=76 Identities=12% Similarity=0.101 Sum_probs=46.7
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHH----HHCCCCHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 023553047740679999999999982995784788852310011----1027703431223343045668999999999
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLEL----SVYDGIPNLLTPVVTNPQKAVTVLKWLVCEM 530 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEl----s~Y~~iPHLl~pVvTd~~kA~~aL~w~V~EM 530 (806)
+..+|.|.||||||-.|+-+..-+..+ -..|.++-.||-++.- .-|....+--.-.+.+++.....++.++..+
T Consensus 7 ~vv~i~G~~GsGKTT~i~kl~~~~~~~--~~~v~ii~~d~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (185)
T 1ls1_A 7 NLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 84 (185)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHHHT--TCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHC--CCEEEEEECCCCCCCHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 499996788887122799999999866--986788842455530779999999872971571278767789999999998
Q ss_pred HH
Q ss_conf 99
Q gi|254780799|r 531 EE 532 (806)
Q Consensus 531 e~ 532 (806)
+.
T Consensus 85 ~~ 86 (185)
T 1ls1_A 85 RL 86 (185)
T ss_dssp HH
T ss_pred HH
T ss_conf 75