HHsearch alignment of GI: 254780799 and MMDB domain: 1pjr_A_1-107_194-286
>1pjr_A (A:1-107,A:194-286) PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus}
Probab=92.88 E-value=0.13 Score=31.29 Aligned_cols=112 Identities=19% Similarity=0.222 Sum_probs=61.2
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 02355304774067999999999998299578478885231001110277034312233430456689999999999999
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEMEERY 534 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~iPHLl~pVvTd~~kA~~aL~w~V~EMe~RY 534 (806)
.|.+|-|.|||||+.++-..|.-+|.+......+.+.+=|. + -+++++.+|.
T Consensus 25 ~~~~V~~~tGsGKT~~~~~~i~~~l~~~~~~~~~il~i~~t---------------------~-------~~~~~l~~~~ 76 (200)
T 1pjr_A 25 GPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFT---------------------N-------KAAREMRERV 76 (200)
T ss_dssp SCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESS---------------------H-------HHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECH---------------------H-------HHHHHHHHHH
T ss_conf 89899983842799999999999998099894229999351---------------------9-------9999999999
Q ss_pred HHH-----HHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCEEEEEHHHHHHHH
Q ss_conf 999-----87089968999999998874478667754467765454322233223234--6986877634468888
Q gi|254780799|r 535 QKM-----SKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQ--HMPYIVVVIDEMADLM 603 (806)
Q Consensus 535 ~l~-----a~~~vRni~~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~lp~ivviiDElaDlm 603 (806)
+-. ....|+.+.++-.+..........+.. ......+......+ .=+|=.|+|||.=|+-
T Consensus 77 ~~~~~~~~~~~~v~t~~~~~~~~~~~~~~~~d~~~---------~~~~~~~~~~~~~~~~~~~~~~i~vDEaQd~~ 143 (200)
T 1pjr_A 77 QSLLGGAAEDVWISTFHSMCVRILRRDIDRIDLIM---------TTIQLFDRVPDVLHYYQYKFQYIHIDEYQDTN 143 (200)
T ss_dssp HHHHGGGGTTSEEEEHHHHHHHHHHHHGGGGHHHH---------HHHHHHHHCHHHHHHHHHHCSEEEESSGGGCC
T ss_pred HHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHH---------HHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 98604435785997499999999999799858999---------99988504999999998642301311124213