HHsearch alignment of GI: 254780799 and MMDB domain: 2d7d_A_1-145_250-415
>2d7d_A (A:1-145,A:250-415) Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=94.76 E-value=0.35 Score=28.03 Aligned_cols=167 Identities=14% Similarity=0.135 Sum_probs=89.0
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHH---------------------HHHHHCCHHHEEEEE----ECCC------------
Q ss_conf 020235530477406799999999---------------------999829957847888----5231------------
Q gi|254780799|r 453 RMPHLLIAGTTGSGKSVAINTMIL---------------------SLLYRMTPAQCRLIM----IDPK------------ 495 (806)
Q Consensus 453 kMPHLLIAGtTGSGKSV~iN~iI~---------------------SlLyk~~P~evklil----iDPK------------ 495 (806)
+.|+.|+.|.|||||+.+.=..+. .+.-...+..++..+ .+++
T Consensus 31 ~~~~~ll~~~tGsGKT~va~~~i~~~~~~vlilvPt~~La~Q~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~ 110 (311)
T 2d7d_A 31 GKKHQTLLGATGTGKTFTVSNLIKEVNKPTLVIAHNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIE 110 (311)
T ss_dssp TCSEEEEEECTTSCHHHHHHHHHHHHCCCEEEECSSHHHHHHHHHHHHHHCTTSEEEEECCCEEEEECCEEETTTTEEEC
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCHHHHHH
T ss_conf 99868986778749999999999984999899918999999999999976698738977750023783003883143664
Q ss_pred -------HHHHHHCCCCHHHHCC-----------CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC----CHHHHHHHHH
Q ss_conf -------0011102770343122-----------33430456689999999999999999870899----6899999999
Q gi|254780799|r 496 -------MLELSVYDGIPNLLTP-----------VVTNPQKAVTVLKWLVCEMEERYQKMSKIGVR----NIDGFNLKVA 553 (806)
Q Consensus 496 -------~vEls~Y~~iPHLl~p-----------VvTd~~kA~~aL~w~V~EMe~RY~l~a~~~vR----ni~~yN~k~~ 553 (806)
.+++-+.++..||+.. +|.++..-..|++-.-+|++.|.+.|.+.+-. +|..+=+...
T Consensus 111 ~~~~~~~~~~~~iid~~h~l~~~~~~v~~~~l~l~i~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~ 190 (311)
T 2d7d_A 111 KDASINDEIDKLRHSATSALFERRDVIIIASVSCIVTRAEKMEKAIQNIEKELEEQLKVMHENGKLLEAQRLEQRTRYDL 190 (311)
T ss_dssp CEEEECHHHHHHHHHHHHHHHHCSCEEEEECGGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 54033089999999999987348984254026766553999999876456555544566564222788898999999999
Q ss_pred HHHHCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCE-EEEEHHHHHHHHHHCC---CHHHHHHHHHHHHHH
Q ss_conf 88744786677--544677654543222332232346986-8776344688887321---005889999998664
Q gi|254780799|r 554 QYHNTGKKFNR--TVQTGFDRKTGEAIYETEHFDFQHMPY-IVVVIDEMADLMMVAR---KDIESAVQRLAQMAR 622 (806)
Q Consensus 554 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~lp~-ivviiDElaDlmm~~~---~~ve~~i~rlaq~ar 622 (806)
+....|..... ..-.-+.++... ++-.--++-||- -+|++||.+-++=.+. +|-.+....+-+.++
T Consensus 191 e~l~~~~~~~~~~~y~~y~y~~~~~---~~~~sl~DY~~~d~li~~De~~ri~e~~~~~~~e~~e~~~~~le~G~ 262 (311)
T 2d7d_A 191 EMMREMGFCSGIENYSRHLTLRPPG---STPYTLLDYFPDDFMIVVDESHVTIPQVRGMFNGDQARKQVLVDHGF 262 (311)
T ss_dssp HHHHHHSCCTTGGGGHHHHTTCCTT---CCCBCGGGGSCSSCEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHCCCCCCHHHHHHHCCCCCC---CCCCHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9998637578811112221145767---77501333146665599822777899986301668888988886020