Query gi|254780799|ref|YP_003065212.1| DNA translocase FtsK [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 806
No_of_seqs 311 out of 1864
Neff 8.3
Searched_HMMs 33803
Date Wed Jun 1 14:07:26 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780799.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2ius_A DNA translocase FTSK; 100.0 4E-42 0 334.6 28.2 375 423-803 1-377 (377)
2 >2iut_A DNA translocase FTSK; 100.0 2.4E-41 1.4E-45 328.7 27.4 375 423-804 1-384 (392)
3 >2iut_A DNA translocase FTSK; 100.0 2.6E-43 0 343.5 9.9 129 292-422 53-182 (182)
4 >2ius_A DNA translocase FTSK; 100.0 4.9E-40 1.4E-44 319.0 9.0 118 303-422 17-135 (135)
5 >2ve8_A FTSK, DNA translocase 99.9 2.5E-25 7.4E-30 208.8 4.7 72 733-804 2-73 (73)
6 >1e9r_A Conjugal transfer prot 99.8 8.2E-19 2.4E-23 160.0 6.4 205 435-661 10-241 (274)
7 >2qby_A CDC6 homolog 1, cell d 96.8 0.039 1.2E-06 35.1 11.7 146 454-654 45-194 (196)
8 >2v1u_A Cell division control 96.3 0.018 5.4E-07 37.6 7.3 135 452-636 42-178 (200)
9 >1cr0_A DNA primase/helicase; 96.2 0.0067 2E-07 40.9 4.3 178 457-667 15-210 (273)
10 >2is6_A DNA helicase II; hydro 96.1 0.0064 1.9E-07 41.0 4.0 71 455-553 23-98 (201)
11 >1uaa_A REP helicase, protein 95.9 0.004 1.2E-07 42.6 2.0 115 453-603 14-138 (195)
12 >2r6a_A DNAB helicase, replica 95.6 0.056 1.6E-06 34.0 7.2 50 588-637 121-176 (264)
13 >2q6t_A DNAB replication FORK 95.4 0.05 1.5E-06 34.3 6.1 48 589-636 131-186 (266)
14 >3bgw_A DNAB-like replicative 95.2 0.031 9.2E-07 35.9 4.6 50 587-636 124-178 (261)
15 >3bh0_A DNAB-like replicative 95.0 0.047 1.4E-06 34.5 5.0 147 457-635 22-182 (266)
16 >2d7d_A Uvrabc system protein 94.8 0.35 1E-05 28.0 12.8 167 453-622 31-262 (311)
17 >1p9r_A General secretion path 94.6 0.052 1.5E-06 34.2 4.4 36 456-495 23-58 (272)
18 >2gza_A Type IV secretion syst 94.5 0.038 1.1E-06 35.2 3.7 46 456-507 34-79 (218)
19 >1fnn_A CDC6P, cell division c 94.5 0.17 5.2E-06 30.3 7.0 58 589-649 124-184 (192)
20 >2oap_1 GSPE-2, type II secret 94.1 0.03 8.7E-07 36.0 2.3 40 457-502 3-42 (186)
21 >2qag_C Septin-7; cell cycle, 93.9 0.032 9.5E-07 35.8 2.2 29 453-481 30-58 (418)
22 >1ls1_A Signal recognition par 93.8 0.22 6.6E-06 29.5 6.4 76 455-532 7-86 (185)
23 >2ewv_A Twitching motility pro 93.8 0.057 1.7E-06 33.9 3.3 25 456-480 14-38 (248)
24 >2qag_B Septin-6, protein NEDD 93.1 0.058 1.7E-06 33.9 2.4 21 456-476 5-25 (388)
25 >1q57_A DNA primase/helicase; 93.1 0.031 9.1E-07 35.9 1.0 66 589-654 123-193 (273)
26 >1pjr_A PCRA; DNA repair, DNA 92.9 0.13 3.8E-06 31.3 3.9 112 455-603 25-143 (200)
27 >2qnr_A Septin-2, protein NEDD 92.8 0.078 2.3E-06 32.9 2.8 78 455-532 19-105 (301)
28 >2eyu_A Twitching motility pro 92.5 0.12 3.7E-06 31.4 3.4 51 456-510 27-77 (261)
29 >1tf7_A KAIC; homohexamer, hex 92.0 0.37 1.1E-05 27.8 5.4 47 589-635 137-185 (254)
30 >3iev_A GTP-binding protein ER 91.8 0.12 3.7E-06 31.4 2.8 26 452-477 8-33 (204)
31 >2og2_A Putative signal recogn 91.5 0.28 8.4E-06 28.7 4.3 55 457-533 11-65 (200)
32 >3b9q_A Chloroplast SRP recept 91.5 0.28 8.4E-06 28.7 4.3 39 457-497 11-49 (200)
33 >2pt7_A CAG-ALFA; ATPase, prot 91.3 0.099 2.9E-06 32.1 1.8 41 455-501 34-74 (192)
34 >1jwy_B Dynamin A GTPase domai 91.3 0.16 4.9E-06 30.5 2.9 27 453-479 23-49 (293)
35 >1f5n_A Interferon-induced gua 91.1 0.16 4.9E-06 30.5 2.8 23 453-475 37-59 (312)
36 >2w00_A HSDR, R.ECOR124I; ATP- 90.8 0.33 9.7E-06 28.2 4.1 50 455-506 28-78 (199)
37 >2w0m_A SSO2452; RECA, SSPF, u 90.5 1.3 3.8E-05 23.8 8.5 69 588-656 121-191 (235)
38 >2o0j_A Terminase, DNA packagi 90.1 0.28 8.2E-06 28.7 3.3 31 455-485 15-45 (221)
39 >2ffh_A Protein (FFH); SRP54, 89.8 0.41 1.2E-05 27.5 3.9 40 456-497 8-47 (190)
40 >1nij_A Hypothetical protein Y 89.6 0.25 7.3E-06 29.2 2.6 183 451-670 1-200 (204)
41 >2aka_B Dynamin-1; fusion prot 89.5 0.29 8.5E-06 28.6 3.0 28 450-477 22-49 (289)
42 >1vma_A Cell division protein 89.3 1.1 3.4E-05 24.2 5.9 75 457-533 107-185 (306)
43 >3h1t_A Type I site-specific r 89.0 0.53 1.6E-05 26.7 4.0 29 455-483 30-58 (192)
44 >3d3q_A TRNA delta(2)-isopente 88.7 1.1 3.4E-05 24.2 5.5 77 452-535 5-94 (182)
45 >2i1q_A DNA repair and recombi 88.4 1.2 3.6E-05 23.9 5.5 46 588-633 138-193 (258)
46 >3cpe_A Terminase, DNA packagi 88.2 0.65 1.9E-05 26.0 4.0 157 453-654 32-192 (238)
47 >2va8_A SSO2462, SKI2-type hel 88.2 0.36 1.1E-05 27.9 2.7 45 451-495 43-87 (204)
48 >1h65_A Chloroplast outer enve 88.1 0.39 1.2E-05 27.6 2.9 41 454-494 39-94 (270)
49 >2j69_A Bacterial dynamin-like 88.0 0.38 1.1E-05 27.7 2.7 23 456-478 3-25 (239)
50 >1es6_A Matrix protein VP40; b 87.5 0.19 5.5E-06 30.1 0.9 30 373-411 10-40 (70)
51 >2oca_A DAR protein, ATP-depen 87.4 0.73 2.2E-05 25.6 3.9 51 451-503 38-88 (202)
52 >1tf7_A KAIC; homohexamer, hex 87.2 1.5 4.5E-05 23.2 5.4 48 588-635 115-163 (271)
53 >1sxj_B Activator 1 37 kDa sub 86.9 0.69 2E-05 25.8 3.5 33 452-484 40-72 (166)
54 >2qag_A Septin-2, protein NEDD 86.8 0.4 1.2E-05 27.6 2.2 23 453-475 3-25 (328)
55 >2hf9_A Probable hydrogenase n 86.6 0.57 1.7E-05 26.4 2.9 40 452-494 36-75 (226)
56 >2fz4_A DNA repair protein RAD 86.6 0.68 2E-05 25.8 3.3 40 450-495 17-56 (150)
57 >3def_A T7I23.11 protein; chlo 86.2 0.54 1.6E-05 26.6 2.7 24 455-478 37-60 (262)
58 >1jjv_A Dephospho-COA kinase; 86.1 0.54 1.6E-05 26.6 2.6 22 454-475 1-23 (206)
59 >3eph_A TRNA isopentenyltransf 85.9 2.4 7.1E-05 21.7 5.9 66 455-527 3-81 (270)
60 >1wp9_A ATP-dependent RNA heli 85.8 0.93 2.8E-05 24.8 3.7 162 455-661 24-194 (196)
61 >2eyq_A TRCF, transcription-re 85.6 0.81 2.4E-05 25.3 3.3 36 455-494 44-79 (202)
62 >1n0w_A DNA repair protein RAD 85.6 1.7 4.9E-05 22.9 4.9 65 607-671 146-211 (243)
63 >2jlq_A Serine protease subuni 85.3 0.47 1.4E-05 27.1 2.0 204 450-717 15-220 (237)
64 >3e70_C DPA, signal recognitio 85.1 1.8 5.5E-05 22.6 5.0 66 457-524 18-87 (200)
65 >1rkb_A Protein AD-004, protei 84.8 0.66 1.9E-05 26.0 2.6 25 451-475 1-25 (173)
66 >3iby_A Ferrous iron transport 84.6 0.78 2.3E-05 25.4 2.9 23 454-476 1-23 (173)
67 >1njg_A DNA polymerase III sub 84.6 0.87 2.6E-05 25.1 3.1 36 450-485 40-76 (185)
68 >3b60_A Lipid A export ATP-bin 84.6 1.2 3.4E-05 24.1 3.7 44 445-493 29-72 (181)
69 >1nlf_A Regulatory protein REP 84.4 1 3E-05 24.5 3.4 49 588-636 109-160 (257)
70 >2qpt_A EH domain-containing p 84.4 0.77 2.3E-05 25.5 2.7 27 450-476 4-30 (237)
71 >1uj2_A Uridine-cytidine kinas 84.3 0.57 1.7E-05 26.4 2.0 74 457-532 25-111 (188)
72 >3eiq_A Eukaryotic initiation 84.1 0.5 1.5E-05 26.9 1.7 52 456-507 79-130 (249)
73 >1puj_A YLQF, conserved hypoth 84.1 0.84 2.5E-05 25.2 2.9 27 452-478 118-144 (177)
74 >2qm8_A GTPase/ATPase; G prote 84.1 1.4 4.1E-05 23.5 4.0 32 452-483 53-84 (337)
75 >3kx2_B PRE-mRNA-splicing fact 83.9 0.99 2.9E-05 24.6 3.2 144 456-641 64-209 (222)
76 >2w58_A DNAI, primosome compon 83.5 1.3 3.8E-05 23.8 3.6 35 450-484 50-84 (202)
77 >3cnl_A YLQF, putative unchara 83.5 0.98 2.9E-05 24.7 3.0 78 400-477 36-122 (158)
78 >3gee_A MNME, tRNA modificatio 83.3 0.54 1.6E-05 26.6 1.6 25 451-475 8-32 (180)
79 >2hjg_A GTP-binding protein EN 83.0 0.88 2.6E-05 25.0 2.6 21 455-475 4-24 (167)
80 >2dyk_A GTP-binding protein; G 82.9 0.99 2.9E-05 24.6 2.8 46 454-499 1-48 (161)
81 >1tq4_A IIGP1, interferon-indu 82.8 0.95 2.8E-05 24.8 2.7 22 456-477 3-24 (197)
82 >3b6e_A Interferon-induced hel 82.7 1 3E-05 24.6 2.8 30 456-485 20-49 (186)
83 >2rdp_A Putative transcription 82.6 1.1 3.3E-05 24.3 3.0 60 744-803 45-105 (127)
84 >2j28_9 Signal recognition par 82.5 0.69 2.1E-05 25.8 1.9 159 451-667 5-169 (239)
85 >3foz_A TRNA delta(2)-isopente 82.5 0.94 2.8E-05 24.8 2.6 24 453-476 8-32 (232)
86 >1yks_A Genome polyprotein [co 81.8 0.98 2.9E-05 24.7 2.4 187 451-717 5-209 (230)
87 >2fwr_A DNA repair protein RAD 81.8 0.64 1.9E-05 26.0 1.5 48 452-505 19-66 (168)
88 >1xpp_A TA1416, DNA-directed R 81.8 0.74 2.2E-05 25.6 1.8 55 493-556 45-104 (115)
89 >3ec1_A YQEH GTPase; atnos1, a 81.6 1.9 5.6E-05 22.5 3.9 31 451-481 159-189 (234)
90 >3exa_A TRNA delta(2)-isopente 81.6 1.1 3.2E-05 24.4 2.6 42 455-507 4-45 (240)
91 >2chg_A Replication factor C s 81.4 1.7 4.9E-05 22.9 3.5 45 587-636 99-143 (160)
92 >1np6_A Molybdopterin-guanine 81.3 1.6 4.6E-05 23.2 3.3 47 451-501 3-49 (174)
93 >1w36_D RECD, exodeoxyribonucl 81.2 2.3 6.7E-05 21.9 4.1 30 453-482 53-82 (263)
94 >2pex_A Transcriptional regula 81.1 1.5 4.4E-05 23.3 3.2 59 745-803 8-67 (71)
95 >2chq_A Replication factor C s 81.0 1.5 4.5E-05 23.2 3.2 109 451-636 35-143 (160)
96 >2bv6_A MGRA, HTH-type transcr 81.0 1.1 3.3E-05 24.2 2.5 59 745-803 9-68 (76)
97 >1mky_A Probable GTP-binding p 81.0 1.3 3.9E-05 23.7 2.9 32 450-481 3-34 (186)
98 >1rif_A DAR protein, DNA helic 80.7 1.9 5.5E-05 22.6 3.6 34 451-484 38-71 (195)
99 >2fbi_A Probable transcription 80.4 1.2 3.7E-05 23.9 2.6 59 745-803 6-65 (75)
100 >1svi_A GTP-binding protein YS 80.3 1.5 4.4E-05 23.3 3.0 27 452-478 21-47 (195)
101 >1sxj_D Activator 1 41 kDa sub 80.2 2 5.9E-05 22.3 3.6 42 449-490 53-94 (191)
102 >1v5w_A DMC1, meiotic recombin 80.0 0.59 1.8E-05 26.3 0.8 79 590-669 124-206 (240)
103 >1z05_A Transcriptional regula 80.0 2.7 7.9E-05 21.4 4.2 47 740-786 38-84 (132)
104 >2i3b_A HCR-ntpase, human canc 80.0 0.013 3.8E-07 38.8 -7.7 53 589-645 104-156 (189)
105 >2v6i_A RNA helicase; membrane 79.9 1.3 3.7E-05 23.9 2.5 198 456-717 4-204 (225)
106 >2gno_A DNA polymerase III, ga 79.9 2 6E-05 22.3 3.5 30 453-482 17-46 (140)
107 >1mv5_A LMRA, multidrug resist 79.9 2.1 6.2E-05 22.2 3.6 150 447-636 21-199 (243)
108 >3e6m_A MARR family transcript 79.8 1.2 3.6E-05 24.0 2.3 58 745-802 57-115 (138)
109 >3hjh_A Transcription-repair-c 79.7 1.6 4.7E-05 23.1 3.0 52 449-507 9-61 (333)
110 >2fa5_A Transcriptional regula 79.4 1.3 3.9E-05 23.7 2.4 58 745-802 53-111 (134)
111 >2ged_A SR-beta, signal recogn 79.3 2.2 6.4E-05 22.1 3.5 54 452-505 46-99 (193)
112 >2z83_A Helicase/nucleoside tr 79.1 0.64 1.9E-05 26.0 0.8 207 447-717 14-223 (240)
113 >1wf3_A GTP-binding protein; G 79.0 1.6 4.7E-05 23.1 2.8 30 449-478 2-31 (179)
114 >3crm_A TRNA delta(2)-isopente 79.0 1.5 4.3E-05 23.4 2.6 42 456-508 7-48 (239)
115 >2nyx_A Probable transcription 78.9 3.5 0.0001 20.5 4.5 55 745-799 7-62 (64)
116 >1iqp_A RFCS; clamp loader, ex 78.9 2.4 7E-05 21.8 3.6 33 451-483 43-75 (168)
117 >3ec2_A DNA replication protei 78.7 2.4 7.1E-05 21.7 3.6 107 454-636 38-144 (180)
118 >3cjn_A Transcriptional regula 78.3 2.4 7.1E-05 21.7 3.5 59 745-803 9-68 (78)
119 >3ch4_B Pmkase, phosphomevalon 77.9 1.8 5.3E-05 22.7 2.8 22 457-478 14-35 (202)
120 >1zuh_A Shikimate kinase; alph 77.8 1.6 4.9E-05 23.0 2.6 24 452-475 5-28 (168)
121 >1sxj_C Activator 1 40 kDa sub 77.7 2.5 7.3E-05 21.7 3.4 31 452-482 44-74 (168)
122 >2a61_A Transcriptional regula 77.6 2.9 8.6E-05 21.1 3.8 55 745-799 9-64 (66)
123 >1zd8_A GTP:AMP phosphotransfe 77.6 1.2 3.4E-05 24.1 1.7 19 452-470 5-23 (227)
124 >2www_A Methylmalonic aciduria 77.5 3.2 9.6E-05 20.8 4.0 43 454-498 74-116 (262)
125 >2vbc_A Dengue 4 NS3 FULL-leng 77.5 1.2 3.4E-05 24.1 1.7 190 449-717 6-212 (229)
126 >2qww_A Transcriptional regula 77.5 3.6 0.00011 20.4 4.2 58 745-802 45-107 (131)
127 >3cmw_A Protein RECA, recombin 77.2 4.7 0.00014 19.5 6.0 115 457-635 30-164 (279)
128 >1fx7_A Iron-dependent repress 77.1 3.9 0.00012 20.1 4.3 36 751-786 20-55 (141)
129 >3lmm_A Uncharacterized protei 77.1 0.5 1.5E-05 26.9 -0.3 64 738-801 104-168 (174)
130 >1xti_A Probable ATP-dependent 76.9 1.6 4.6E-05 23.1 2.2 50 456-505 47-96 (219)
131 >3llu_A RAS-related GTP-bindin 76.9 2.1 6.3E-05 22.1 2.9 33 445-477 11-43 (196)
132 >1i1g_A Transcriptional regula 76.9 3.9 0.00011 20.2 4.2 49 740-788 3-51 (54)
133 >2bjv_A PSP operon transcripti 76.5 2.6 7.6E-05 21.5 3.2 36 456-496 31-67 (181)
134 >3dzd_A Transcriptional regula 76.5 1.1 3.2E-05 24.3 1.3 36 456-496 26-61 (174)
135 >1z91_A Organic hydroperoxide 76.5 2.5 7.3E-05 21.7 3.2 58 745-802 11-69 (78)
136 >2hjg_A GTP-binding protein EN 76.5 2.1 6.3E-05 22.1 2.8 26 452-477 6-31 (186)
137 >1sq5_A Pantothenate kinase; P 76.5 3.3 9.9E-05 20.7 3.8 66 427-505 61-130 (245)
138 >3i8s_A Ferrous iron transport 76.4 2.2 6.6E-05 22.0 2.9 24 453-476 2-25 (188)
139 >3a8t_A Adenylate isopentenylt 76.4 1.8 5.3E-05 22.7 2.4 42 456-508 42-83 (228)
140 >2dby_A GTP-binding protein; G 76.2 1.8 5.4E-05 22.6 2.4 24 456-479 3-26 (287)
141 >1knx_A Probable HPR(Ser) kina 76.1 2.3 6.8E-05 21.9 2.9 21 456-476 16-36 (158)
142 >2zj8_A DNA helicase, putative 76.1 2.6 7.7E-05 21.5 3.2 43 453-495 38-80 (199)
143 >2ff7_A Alpha-hemolysin transl 75.7 3.3 9.7E-05 20.7 3.6 148 448-636 29-205 (247)
144 >3bs4_A Uncharacterized protei 75.5 2.7 8E-05 21.4 3.1 36 456-495 23-58 (260)
145 >2e87_A Hypothetical protein P 75.5 2.2 6.5E-05 22.0 2.7 24 453-476 4-27 (195)
146 >3bor_A Human initiation facto 75.4 1.5 4.4E-05 23.3 1.8 137 456-630 69-210 (237)
147 >2k4b_A Transcriptional regula 75.3 3.7 0.00011 20.3 3.8 52 744-795 38-93 (99)
148 >3bpv_A Transcriptional regula 75.3 2.7 7.9E-05 21.4 3.1 60 744-803 32-92 (114)
149 >2p6r_A Afuhel308 helicase; pr 75.3 2.7 8E-05 21.4 3.1 37 455-495 41-77 (202)
150 >1w1w_A Structural maintenance 75.2 4.1 0.00012 20.0 4.0 33 444-476 16-48 (232)
151 >3kqn_A Serine protease/ntpase 75.1 1.7 5E-05 22.9 2.0 28 451-478 6-33 (242)
152 >2pn6_A ST1022, 150AA long hyp 75.1 4.1 0.00012 20.0 4.0 49 740-788 2-50 (53)
153 >1jr3_A DNA polymerase III sub 75.0 2.8 8.3E-05 21.2 3.1 32 451-482 34-66 (177)
154 >2cyy_A Putative HTH-type tran 74.7 5.3 0.00016 19.2 4.5 50 738-787 4-53 (57)
155 >2h57_A ADP-ribosylation facto 74.4 1.6 4.6E-05 23.1 1.7 26 451-476 18-43 (190)
156 >1gm5_A RECG; helicase, replic 74.2 3.8 0.00011 20.3 3.6 28 456-483 45-72 (203)
157 >3k0l_A Repressor protein; hel 73.9 3.1 9.3E-05 20.9 3.1 58 745-802 50-108 (131)
158 >2e1c_A Putative HTH-type tran 73.8 5.7 0.00017 18.9 4.9 53 735-787 21-73 (77)
159 >2gxq_A Heat resistant RNA dep 73.6 1.7 4.9E-05 22.9 1.7 39 456-494 40-80 (207)
160 >2fxa_A Protease production re 73.6 5.4 0.00016 19.1 4.3 58 745-802 8-68 (81)
161 >1mky_A Probable GTP-binding p 73.6 2.5 7.5E-05 21.6 2.6 19 457-475 4-22 (173)
162 >1jgs_A Multiple antibiotic re 73.4 3.4 1E-04 20.6 3.2 59 745-803 38-97 (122)
163 >3ech_A MEXR, multidrug resist 73.3 2.1 6.1E-05 22.2 2.1 60 744-803 40-100 (122)
164 >3h2y_A GTPase family protein; 73.0 3.2 9.5E-05 20.8 3.0 34 450-483 156-189 (232)
165 >1ly1_A Polynucleotide kinase; 72.9 2.8 8.2E-05 21.3 2.7 41 454-494 1-44 (114)
166 >2ia0_A Putative HTH-type tran 72.6 6.1 0.00018 18.7 4.7 52 736-787 12-63 (66)
167 >1s3j_A YUSO protein; structur 72.6 3.2 9.5E-05 20.8 2.9 59 744-802 40-99 (122)
168 >2e28_A Pyruvate kinase, PK; a 72.5 2 5.9E-05 22.3 1.9 116 512-652 74-198 (243)
169 >2p67_A LAO/AO transport syste 72.4 4.8 0.00014 19.5 3.8 42 453-496 55-96 (265)
170 >2gj8_A MNME, tRNA modificatio 72.4 3.2 9.5E-05 20.8 2.9 25 453-477 3-27 (172)
171 >2nnn_A Probable transcription 72.3 4.6 0.00014 19.6 3.7 55 745-799 8-63 (65)
172 >1sxj_E Activator 1 40 kDa sub 72.3 2.1 6.3E-05 22.1 2.0 35 452-486 33-68 (192)
173 >2olj_A Amino acid ABC transpo 72.1 2.6 7.8E-05 21.4 2.4 163 446-654 42-231 (263)
174 >3i4p_A Transcriptional regula 71.9 5.4 0.00016 19.1 3.9 49 740-788 2-50 (53)
175 >3dmq_A RNA polymerase-associa 71.9 6.2 0.00018 18.6 4.3 40 454-495 21-60 (302)
176 >3a00_A Guanylate kinase, GMP 71.8 3 8.8E-05 21.1 2.6 40 457-497 4-43 (186)
177 >2j37_W Signal recognition par 71.6 2.8 8.2E-05 21.3 2.4 38 457-496 9-46 (190)
178 >1on2_A Transcriptional regula 71.5 4.9 0.00015 19.4 3.7 46 742-787 9-54 (142)
179 >1yrb_A ATP(GTP)binding protei 71.4 4.3 0.00013 19.9 3.3 25 455-479 15-39 (262)
180 >2d2e_A SUFC protein; ABC-ATPa 71.2 4.8 0.00014 19.5 3.6 163 438-636 9-204 (250)
181 >1g29_1 MALK, maltose transpor 71.1 2.9 8.5E-05 21.2 2.4 158 445-636 20-201 (234)
182 >3bja_A Transcriptional regula 71.1 3.5 0.0001 20.5 2.8 59 744-802 36-95 (118)
183 >1w36_B RECB, exodeoxyribonucl 71.1 6.6 0.00019 18.5 4.5 98 454-551 16-135 (243)
184 >3dhw_C Methionine import ATP- 70.9 3.1 9.1E-05 20.9 2.5 160 449-654 26-213 (245)
185 >1g16_A RAS-related protein SE 70.9 3.6 0.00011 20.4 2.9 48 453-504 2-59 (170)
186 >4tmk_A Protein (thymidylate k 70.8 4.2 0.00012 19.9 3.2 31 457-487 6-36 (213)
187 >1qzx_A SRP54, signal recognit 70.6 5.5 0.00016 19.0 3.8 75 455-531 8-86 (193)
188 >2awn_A Maltose/maltodextrin i 70.6 3.8 0.00011 20.3 2.9 164 433-636 8-195 (236)
189 >3fm5_A Transcriptional regula 70.4 4.2 0.00013 19.9 3.1 58 745-802 43-102 (124)
190 >3bdd_A Regulatory protein MAR 70.3 6.4 0.00019 18.5 4.1 58 745-802 6-64 (73)
191 >2z4s_A Chromosomal replicatio 70.2 6 0.00018 18.7 3.9 33 451-483 127-159 (262)
192 >1e69_A Chromosome segregation 70.1 2.1 6.1E-05 22.2 1.5 27 456-482 26-52 (217)
193 >3dkp_A Probable ATP-dependent 70.0 4.9 0.00014 19.4 3.4 41 456-496 68-108 (245)
194 >1fuu_A Yeast initiation facto 70.0 2 5.8E-05 22.4 1.4 167 593-768 165-351 (394)
195 >2dbb_A Putative HTH-type tran 69.9 6.9 0.00021 18.3 4.3 50 738-787 6-55 (58)
196 >2vsf_A XPD, DNA repair helica 69.9 2 5.8E-05 22.4 1.3 49 456-507 6-55 (234)
197 >1pui_A ENGB, probable GTP-bin 69.7 1.9 5.5E-05 22.6 1.2 26 452-477 24-49 (210)
198 >1ega_A Protein (GTP-binding p 69.5 3.9 0.00012 20.1 2.8 27 451-477 5-31 (181)
199 >1twf_K B13.6, DNA-directed RN 69.3 3.9 0.00012 20.2 2.8 44 493-538 53-102 (120)
200 >1qvr_A CLPB protein; coiled c 69.1 4.8 0.00014 19.5 3.2 49 451-499 43-94 (186)
201 >1g7s_A Translation initiation 69.0 4 0.00012 20.1 2.8 38 586-631 87-124 (217)
202 >1lj9_A Transcriptional regula 69.0 6.4 0.00019 18.6 3.8 57 745-801 6-63 (87)
203 >3b5x_A Lipid A export ATP-bin 68.9 3 8.8E-05 21.1 2.1 48 456-505 48-114 (259)
204 >3h0g_K DNA-directed RNA polym 68.8 4.6 0.00014 19.6 3.1 53 493-554 52-110 (123)
205 >2i4i_A ATP-dependent RNA heli 68.8 4.3 0.00013 19.9 2.9 30 455-484 53-82 (245)
206 >3jux_A Protein translocase su 68.6 3.6 0.00011 20.4 2.5 14 457-470 91-104 (325)
207 >2jeo_A Uridine-cytidine kinas 68.6 3.5 0.0001 20.5 2.4 49 457-505 28-78 (181)
208 >3d31_A Sulfate/molybdate ABC 68.5 5.5 0.00016 19.1 3.4 147 446-636 18-189 (224)
209 >2j9r_A Thymidine kinase; TK1, 68.5 3.1 9.3E-05 20.9 2.1 43 450-496 23-66 (167)
210 >1upt_A ARL1, ADP-ribosylation 68.5 4.3 0.00013 19.9 2.8 55 452-506 5-62 (171)
211 >2p5v_A Transcriptional regula 68.4 7.4 0.00022 18.1 4.5 50 737-786 6-55 (60)
212 >1ukz_A Uridylate kinase; tran 68.3 4.1 0.00012 20.0 2.7 24 452-475 13-36 (203)
213 >1ub9_A Hypothetical protein P 68.2 7.5 0.00022 18.1 4.1 58 744-801 19-77 (100)
214 >3fmp_B ATP-dependent RNA heli 68.2 3.9 0.00012 20.1 2.6 56 589-644 233-288 (479)
215 >1q3t_A Cytidylate kinase; nuc 68.2 2.8 8.1E-05 21.3 1.8 39 453-491 15-53 (149)
216 >2qq9_A Diphtheria toxin repre 68.1 7.5 0.00022 18.0 4.4 37 751-787 20-56 (146)
217 >1d2n_A N-ethylmaleimide-sensi 68.0 5.4 0.00016 19.1 3.3 48 589-636 123-178 (196)
218 >3dpu_A RAB family protein; ro 68.0 4.5 0.00013 19.7 2.9 24 455-478 6-29 (177)
219 >2wv9_A Flavivirin protease NS 67.8 4 0.00012 20.1 2.6 109 590-717 101-210 (243)
220 >2qby_B CDC6 homolog 3, cell d 67.7 3.9 0.00011 20.2 2.5 144 454-654 45-194 (196)
221 >2wji_A Ferrous iron transport 67.6 4.4 0.00013 19.7 2.8 25 453-477 2-26 (165)
222 >2cbz_A Multidrug resistance-a 67.6 5.6 0.00017 19.0 3.3 153 446-636 23-190 (237)
223 >3hrs_A Metalloregulator SCAR; 67.6 7.1 0.00021 18.2 3.8 35 752-786 17-51 (138)
224 >3euj_A Chromosome partition p 67.4 5.1 0.00015 19.3 3.1 44 586-636 208-254 (281)
225 >2qu8_A Putative nucleolar GTP 67.4 3.7 0.00011 20.3 2.3 24 452-475 27-50 (228)
226 >1jmx_A Amine dehydrogenase; o 67.3 3.5 0.0001 20.5 2.2 25 689-713 44-68 (80)
227 >1z6g_A Guanylate kinase; stru 67.2 4.4 0.00013 19.8 2.7 100 444-555 13-124 (169)
228 >2ixe_A Antigen peptide transp 67.2 4.2 0.00012 19.9 2.6 156 447-636 38-218 (271)
229 >2f1r_A Molybdopterin-guanine 67.2 5.9 0.00017 18.8 3.3 40 454-493 1-52 (121)
230 >2iw3_A Elongation factor 3A; 67.0 5.5 0.00016 19.0 3.2 159 449-654 40-221 (237)
231 >1qde_A EIF4A, translation ini 67.0 3.3 9.7E-05 20.7 2.0 54 456-509 53-106 (224)
232 >1cu1_A Protein (protease/heli 66.8 2.5 7.4E-05 21.6 1.4 134 450-638 5-140 (283)
233 >2jaq_A Deoxyguanosine kinase; 66.7 4 0.00012 20.1 2.4 19 457-475 3-21 (205)
234 >1s2m_A Putative ATP-dependent 66.7 3.5 0.0001 20.5 2.1 50 456-505 60-109 (227)
235 >2wjg_A FEOB, ferrous iron tra 66.5 4.8 0.00014 19.5 2.8 26 452-477 5-30 (188)
236 >1a5t_A Delta prime, HOLB; zin 66.2 5.8 0.00017 18.9 3.1 33 450-482 19-52 (166)
237 >3by6_A Predicted transcriptio 66.2 7.3 0.00022 18.1 3.7 58 736-793 6-73 (106)
238 >1g6h_A High-affinity branched 66.1 3.6 0.00011 20.4 2.0 37 438-474 13-53 (179)
239 >2ihy_A ABC transporter, ATP-b 66.0 7.3 0.00022 18.1 3.6 156 446-636 39-224 (249)
240 >1lnz_A SPO0B-associated GTP-b 65.8 3.1 9.2E-05 20.9 1.7 21 457-477 3-23 (184)
241 >2yyz_A Sugar ABC transporter, 65.4 7.7 0.00023 18.0 3.6 143 447-636 22-195 (225)
242 >1pby_A Quinohemoprotein amine 65.3 4.5 0.00013 19.7 2.4 25 689-713 43-67 (79)
243 >3deu_A Transcriptional regula 65.3 6.8 0.0002 18.3 3.3 56 745-800 57-114 (139)
244 >2vl7_A XPD; helicase, unknown 65.3 3.5 0.0001 20.5 1.9 21 452-472 24-44 (229)
245 >2qc0_A Uncharacterized protei 65.2 8.5 0.00025 17.6 4.4 12 144-155 206-217 (373)
246 >2vhj_A Ntpase P4, P4; non- hy 65.1 8.5 0.00025 17.6 4.7 154 440-670 41-210 (267)
247 >2onk_A Molybdate/tungstate AB 65.0 4.9 0.00015 19.4 2.6 144 456-636 26-188 (228)
248 >2v54_A DTMP kinase, thymidyla 65.0 4.7 0.00014 19.5 2.5 18 457-474 7-24 (204)
249 >1zj6_A ADP-ribosylation facto 65.0 5.6 0.00016 19.0 2.8 74 455-528 17-108 (187)
250 >3crv_A XPD/RAD3 related DNA h 64.9 3.7 0.00011 20.4 1.9 21 451-471 19-39 (229)
251 >2j41_A Guanylate kinase; GMP, 64.9 4.9 0.00015 19.4 2.6 22 455-476 7-28 (158)
252 >2hyd_A ABC transporter homolo 64.8 4 0.00012 20.1 2.1 43 447-495 32-75 (179)
253 >2v1x_A ATP-dependent DNA heli 64.5 4 0.00012 20.1 2.0 21 456-476 61-81 (235)
254 >1p4x_A Staphylococcal accesso 64.5 7.6 0.00022 18.0 3.4 58 745-802 7-67 (95)
255 >2ze6_A Isopentenyl transferas 64.4 5.3 0.00016 19.2 2.6 44 454-508 1-44 (125)
256 >3eco_A MEPR; mutlidrug efflux 64.4 7.9 0.00023 17.9 3.5 58 744-801 34-94 (119)
257 >2bwj_A Adenylate kinase 5; ph 64.3 5.4 0.00016 19.1 2.7 24 451-474 9-32 (199)
258 >2z0m_A 337AA long hypothetica 64.3 3 8.9E-05 21.0 1.4 27 455-481 32-58 (192)
259 >1u0j_A DNA replication protei 64.3 4.8 0.00014 19.5 2.4 13 328-340 176-188 (204)
260 >1xjc_A MOBB protein homolog; 64.3 7.3 0.00022 18.1 3.3 41 453-497 3-45 (169)
261 >2z43_A DNA repair and recombi 64.2 4.3 0.00013 19.8 2.2 29 607-635 142-170 (236)
262 >3bro_A Transcriptional regula 64.1 5.2 0.00015 19.2 2.5 47 757-803 3-50 (51)
263 >1in4_A RUVB, holliday junctio 64.1 6.6 0.00019 18.5 3.1 25 455-479 52-76 (179)
264 >1ltq_A Polynucleotide kinase; 64.0 4.9 0.00014 19.4 2.4 21 457-477 5-25 (114)
265 >3boq_A Transcriptional regula 63.8 3 8.9E-05 21.0 1.3 58 745-802 51-110 (133)
266 >2it1_A 362AA long hypothetica 63.6 8.7 0.00026 17.6 3.6 29 447-475 22-50 (231)
267 >1odf_A YGR205W, hypothetical 63.6 5.1 0.00015 19.3 2.4 33 457-490 34-66 (211)
268 >2o5v_A DNA replication and re 63.5 7.8 0.00023 17.9 3.4 39 304-351 118-156 (190)
269 >3g3z_A NMB1585, transcription 63.5 9.1 0.00027 17.4 3.8 58 745-802 6-66 (91)
270 >2fbh_A Transcriptional regula 63.3 8.6 0.00025 17.6 3.6 56 745-800 7-64 (67)
271 >2pt5_A Shikimate kinase, SK; 63.2 3.4 0.0001 20.6 1.5 20 455-474 1-20 (168)
272 >1zd9_A ADP-ribosylation facto 63.2 6 0.00018 18.7 2.8 26 453-478 21-46 (188)
273 >2gxg_A 146AA long hypothetica 63.1 5.9 0.00017 18.8 2.7 56 747-802 42-98 (121)
274 >2cvh_A DNA repair and recombi 62.9 5.1 0.00015 19.3 2.3 153 457-656 23-184 (220)
275 >3bj6_A Transcriptional regula 62.9 8.3 0.00024 17.7 3.4 59 744-802 43-102 (125)
276 >3bwg_A Uncharacterized HTH-ty 62.8 5.2 0.00015 19.2 2.4 56 739-794 3-68 (82)
277 >1y63_A LMAJ004144AAA protein; 62.7 6 0.00018 18.8 2.7 22 453-474 9-30 (184)
278 >3bos_A Putative DNA replicati 62.7 5.8 0.00017 18.9 2.6 45 591-636 105-149 (175)
279 >1jbk_A CLPB protein; beta bar 62.6 9.4 0.00028 17.3 3.7 121 450-637 39-163 (195)
280 >2v3c_C SRP54, signal recognit 62.6 5 0.00015 19.3 2.3 65 456-522 10-81 (188)
281 >1nrj_B SR-beta, signal recogn 62.6 6.6 0.00019 18.5 2.9 51 453-503 11-61 (218)
282 >1z6r_A MLC protein; transcrip 62.5 8.7 0.00026 17.5 3.5 42 744-785 19-60 (107)
283 >3g5u_A MCG1178, multidrug res 62.4 4.8 0.00014 19.5 2.1 208 450-705 39-274 (287)
284 >3kv5_D JMJC domain-containing 62.4 6.6 0.00019 18.5 2.8 92 622-713 131-253 (260)
285 >3kv9_A JMJC domain-containing 62.4 6.6 0.00019 18.5 2.8 92 622-713 131-253 (260)
286 >3h0k_A UPF0200 protein SSO104 62.3 5.5 0.00016 19.1 2.4 18 457-474 3-20 (178)
287 >2iyv_A Shikimate kinase, SK; 62.3 3.4 0.0001 20.6 1.3 20 455-474 3-22 (169)
288 >2zr9_A Protein RECA, recombin 62.2 9.1 0.00027 17.4 3.5 45 592-636 119-165 (237)
289 >2bbs_A Cystic fibrosis transm 62.2 5.8 0.00017 18.9 2.5 108 440-557 46-173 (290)
290 >3cdh_A Transcriptional regula 62.1 3.6 0.00011 20.4 1.5 58 744-801 16-74 (103)
291 >3b85_A Phosphate starvation-i 62.1 8.4 0.00025 17.7 3.3 47 448-495 16-62 (194)
292 >1znw_A Guanylate kinase, GMP 62.0 6.1 0.00018 18.7 2.6 37 439-475 3-41 (155)
293 >3con_A GTPase NRAS; structura 61.9 6.5 0.00019 18.5 2.8 51 455-505 22-77 (190)
294 >1vrb_A Putative asparaginyl h 61.9 3.7 0.00011 20.3 1.5 16 672-687 219-234 (254)
295 >1ny5_A Transcriptional regula 61.8 5.7 0.00017 18.9 2.4 38 455-497 22-60 (173)
296 >3geh_A MNME, tRNA modificatio 61.7 7 0.00021 18.3 2.9 28 452-479 9-36 (177)
297 >3cta_A Riboflavin kinase; str 61.5 2.7 8.1E-05 21.3 0.7 58 746-803 18-75 (91)
298 >1ye8_A Protein THEP1, hypothe 61.5 6.3 0.00019 18.6 2.6 42 593-639 102-144 (178)
299 >1xp8_A RECA protein, recombin 61.4 8.3 0.00025 17.7 3.2 30 607-636 113-142 (215)
300 >1l8q_A Chromosomal replicatio 61.3 5.9 0.00018 18.8 2.4 46 590-636 98-143 (166)
301 >2pa8_L DNA-directed RNA polym 61.3 6.3 0.00019 18.6 2.6 45 493-539 35-85 (92)
302 >2dpx_A GTP-binding protein RA 61.2 6.9 0.0002 18.3 2.8 24 453-476 6-29 (174)
303 >1via_A Shikimate kinase; stru 61.0 3.8 0.00011 20.3 1.4 43 452-501 2-44 (175)
304 >1v43_A Sugar-binding transpor 61.0 7.6 0.00022 18.0 2.9 163 437-636 20-203 (239)
305 >3ihw_A Centg3; RAS, centaurin 61.0 6.9 0.0002 18.3 2.7 54 455-508 21-80 (184)
306 >3db2_A Putative NADPH-depende 60.9 10 0.0003 17.1 3.6 43 598-640 81-132 (183)
307 >1l2t_A Hypothetical ABC trans 60.9 10 0.0003 17.1 3.6 41 447-491 24-64 (235)
308 >2r2a_A Uncharacterized protei 60.9 6.5 0.00019 18.5 2.6 74 452-525 3-80 (199)
309 >1u0l_A Probable GTPase ENGC; 60.7 6.6 0.00019 18.5 2.6 43 437-479 79-121 (228)
310 >3ld9_A DTMP kinase, thymidyla 60.6 8.4 0.00025 17.7 3.1 31 457-487 24-54 (223)
311 >1hsj_A Fusion protein consist 60.6 7.6 0.00022 18.0 2.9 56 746-801 9-67 (87)
312 >3enu_A Nitrollin, putative un 60.4 3.1 9.1E-05 20.9 0.9 23 677-699 34-56 (114)
313 >2px0_A Flagellar biosynthesis 60.3 10 0.0003 17.0 5.2 144 457-667 10-158 (187)
314 >1t6n_A Probable ATP-dependent 60.2 5.2 0.00015 19.2 2.0 50 456-505 53-102 (220)
315 >1zo1_I IF2, translation initi 60.1 7.6 0.00022 18.0 2.8 48 453-503 3-50 (170)
316 >2rhm_A Putative kinase; ZP_00 60.0 6.7 0.0002 18.4 2.5 20 456-475 7-26 (193)
317 >2frh_A SARA, staphylococcal a 59.9 10 0.00031 17.0 3.9 56 745-800 41-99 (127)
318 >3dm5_A SRP54, signal recognit 59.9 10 0.00031 17.0 6.0 74 450-525 2-80 (192)
319 >2fh5_B SR-beta, signal recogn 59.9 7.5 0.00022 18.0 2.8 25 453-477 6-30 (214)
320 >2p5s_A RAS and EF-hand domain 59.8 7.5 0.00022 18.0 2.8 54 450-503 24-83 (199)
321 >1u94_A RECA protein, recombin 59.5 10 0.00031 17.0 3.4 132 457-634 30-163 (237)
322 >3cmw_A Protein RECA, recombin 59.5 10 0.00031 17.0 3.4 132 457-634 30-163 (237)
323 >3cmu_A Protein RECA, recombin 59.5 9 0.00026 17.5 3.1 45 591-635 114-160 (233)
324 >3fvq_A Fe(3+) IONS import ATP 59.3 8.9 0.00026 17.5 3.1 169 440-654 12-211 (241)
325 >2vp4_A Deoxynucleoside kinase 59.2 4.2 0.00012 19.9 1.4 55 457-520 23-77 (230)
326 >2cxx_A Probable GTP-binding p 59.1 8.3 0.00024 17.7 2.9 21 456-476 3-23 (190)
327 >2h17_A ADP-ribosylation facto 59.1 7.8 0.00023 17.9 2.7 22 455-476 22-43 (181)
328 >3g5u_A MCG1178, multidrug res 58.8 7.8 0.00023 17.9 2.7 211 409-682 6-246 (266)
329 >1kht_A Adenylate kinase; phos 58.7 7.6 0.00023 18.0 2.6 30 453-482 2-31 (192)
330 >1jhf_A LEXA repressor; LEXA S 58.7 11 0.00032 16.8 4.8 60 740-800 9-70 (72)
331 >1x3s_A RAS-related protein RA 58.6 8.1 0.00024 17.8 2.8 48 456-503 17-70 (195)
332 >2g3y_A GTP-binding protein GE 58.6 8.1 0.00024 17.8 2.8 24 454-477 37-60 (211)
333 >1z47_A CYSA, putative ABC-tra 58.6 11 0.00032 16.8 3.9 155 445-636 32-207 (237)
334 >1qhx_A CPT, protein (chloramp 58.6 7.8 0.00023 17.9 2.7 22 454-475 1-24 (178)
335 >2yu1_A JMJC domain-containing 58.5 11 0.00032 16.9 3.4 99 615-713 137-266 (273)
336 >2plr_A DTMP kinase, probable 58.5 7.6 0.00022 18.0 2.6 23 455-477 5-27 (213)
337 >1nn5_A Similar to deoxythymid 58.5 7.3 0.00022 18.1 2.5 66 456-525 11-76 (215)
338 >2b8t_A Thymidine kinase; deox 58.4 10 0.00031 17.0 3.3 106 457-633 15-124 (155)
339 >1aky_A Adenylate kinase; ATP: 58.4 5.4 0.00016 19.1 1.8 18 453-470 3-21 (158)
340 >2v26_A Myosin VI; calmodulin- 58.4 11 0.00033 16.8 3.6 27 456-482 62-88 (195)
341 >1i54_A Cytochrome C; zinc-por 58.3 6.9 0.00021 18.3 2.4 22 692-713 81-102 (103)
342 >2qen_A Walker-type ATPase; un 58.2 8.3 0.00025 17.7 2.8 30 448-477 25-54 (202)
343 >1w9i_A Myosin II heavy chain; 58.2 11 0.00033 16.8 3.6 16 475-490 428-443 (477)
344 >3c8u_A Fructokinase; YP_61236 57.9 9.1 0.00027 17.4 2.9 37 457-495 25-61 (146)
345 >1oyw_A RECQ helicase, ATP-dep 57.9 3.9 0.00012 20.2 1.0 16 456-471 42-57 (209)
346 >1rz3_A Hypothetical protein r 57.8 7.7 0.00023 18.0 2.5 25 457-481 25-49 (201)
347 >2cfx_A HTH-type transcription 57.8 11 0.00033 16.7 4.5 48 739-786 3-50 (55)
348 >1ek0_A Protein (GTP-binding p 57.8 8.5 0.00025 17.6 2.8 50 455-504 4-59 (170)
349 >3gfo_A Cobalt import ATP-bind 57.7 11 0.00033 16.7 6.6 147 449-637 29-206 (230)
350 >1q0u_A Bstdead; DEAD protein, 57.7 7 0.00021 18.3 2.3 37 456-492 43-79 (219)
351 >2blf_B SORB, sulfite\:cytochr 57.7 6.4 0.00019 18.5 2.1 23 689-711 57-79 (81)
352 >2w25_A Probable transcription 57.6 11 0.00033 16.7 4.7 50 738-787 4-53 (56)
353 >1lw7_A Transcriptional regula 57.4 9 0.00027 17.4 2.8 65 588-652 115-192 (204)
354 >2qtf_A Protein HFLX, GTP-bind 57.4 9.1 0.00027 17.4 2.8 23 453-475 7-29 (193)
355 >1bf6_A Phosphotriesterase hom 57.3 8.3 0.00025 17.7 2.6 51 595-654 35-94 (146)
356 >2qt1_A Nicotinamide riboside 57.3 8.9 0.00026 17.5 2.8 18 457-474 24-41 (207)
357 >3cmu_A Protein RECA, recombin 57.3 10 0.00031 17.0 3.1 43 592-634 119-163 (237)
358 >2nzj_A GTP-binding protein RE 57.2 8.9 0.00026 17.5 2.8 51 455-505 5-61 (175)
359 >2v08_A Cytochrome C6; photosy 57.1 3.9 0.00011 20.2 0.9 27 691-717 60-86 (86)
360 >1knq_A Gluconate kinase; ALFA 57.0 8.5 0.00025 17.6 2.6 22 454-475 8-29 (175)
361 >1br2_A Myosin; muscle protein 57.0 12 0.00034 16.6 3.6 28 455-482 92-119 (324)
362 >2eth_A Transcriptional regula 56.9 12 0.00034 16.6 3.8 58 744-801 47-105 (130)
363 >2fsf_A Preprotein translocase 56.7 7.4 0.00022 18.1 2.3 24 426-449 340-364 (407)
364 >2pez_A Bifunctional 3'-phosph 56.7 7.9 0.00023 17.9 2.4 27 456-482 7-33 (179)
365 >3cmu_A Protein RECA, recombin 56.7 12 0.00035 16.6 6.4 116 457-635 30-164 (281)
366 >2di3_A Bacterial regulatory p 56.6 12 0.00035 16.6 3.7 41 754-794 27-67 (78)
367 >1ky3_A GTP-binding protein YP 56.5 9.2 0.00027 17.4 2.8 24 454-477 8-31 (182)
368 >1xty_A PTH, peptidyl-tRNA hyd 56.4 12 0.00035 16.6 4.2 48 328-379 63-115 (120)
369 >3d8c_A Hypoxia-inducible fact 56.4 5.3 0.00016 19.2 1.5 19 668-686 226-244 (274)
370 >1kag_A SKI, shikimate kinase 56.3 8.3 0.00025 17.7 2.5 23 454-476 4-26 (173)
371 >2z9v_A Aspartate aminotransfe 56.2 12 0.00035 16.5 3.4 101 595-711 79-190 (216)
372 >1rk6_A D-aminoacylase; TIM ba 56.1 12 0.00035 16.5 3.8 83 688-782 101-184 (233)
373 >1j8m_F SRP54, signal recognit 56.1 11 0.00033 16.7 3.1 40 456-497 9-48 (193)
374 >1pzn_A RAD51, DNA repair and 55.9 10 0.0003 17.1 2.9 58 609-668 148-205 (237)
375 >1gku_B Reverse gyrase, TOP-RG 55.6 8.5 0.00025 17.6 2.5 29 456-484 44-72 (205)
376 >1nks_A Adenylate kinase; ther 55.5 9.6 0.00029 17.2 2.7 24 454-477 1-24 (194)
377 >3bk7_A ABC transporter ATP-bi 55.5 8.5 0.00025 17.6 2.4 25 451-475 33-57 (226)
378 >3f9v_A Minichromosome mainten 55.4 5 0.00015 19.4 1.2 37 456-499 2-38 (150)
379 >1xew_X SMC protein; structura 55.4 12 0.00036 16.4 3.8 24 457-480 29-52 (139)
380 >3f8t_A Predicted ATPase invol 55.4 5 0.00015 19.4 1.2 44 455-503 132-175 (398)
381 >1szp_A DNA repair protein RAD 55.3 7.1 0.00021 18.2 2.0 47 590-636 113-169 (240)
382 >3e1s_A Exodeoxyribonuclease V 55.0 10 0.0003 17.1 2.7 27 453-479 54-80 (215)
383 >3edp_A LIN2111 protein; APC88 55.0 12 0.00037 16.4 3.9 55 738-792 6-70 (76)
384 >3k3o_A PHF8, PHD finger prote 54.5 11 0.00032 16.9 2.8 89 623-711 146-265 (274)
385 >1lvg_A Guanylate kinase, GMP 54.3 9.8 0.00029 17.2 2.6 30 457-491 7-36 (198)
386 >1f1f_A Cytochrome C6; heme, p 54.2 4.6 0.00014 19.6 0.9 22 696-717 68-89 (89)
387 >1b0u_A Histidine permease; AB 54.2 9.1 0.00027 17.4 2.4 66 593-669 174-244 (262)
388 >2nq2_C Hypothetical ABC trans 54.1 9.5 0.00028 17.3 2.5 152 448-636 25-190 (214)
389 >2hr3_A Probable transcription 54.0 11 0.00033 16.7 2.9 57 745-801 10-68 (94)
390 >2rgx_A Adenylate kinase; tran 53.6 6.4 0.00019 18.6 1.5 15 456-470 2-16 (148)
391 >1hqc_A RUVB; extended AAA-ATP 53.6 10 0.0003 17.0 2.6 25 454-478 38-62 (167)
392 >3k2o_A Bifunctional arginine 53.5 6.2 0.00018 18.6 1.5 25 512-536 72-97 (292)
393 >1q7s_A BIT1, protein CGI-147; 53.5 13 0.00039 16.2 4.4 48 328-379 60-112 (117)
394 >1w5s_A ORC2; CDC6, DNA replic 53.4 9.4 0.00028 17.3 2.4 39 455-493 53-93 (214)
395 >3cm0_A Adenylate kinase; ATP- 52.6 11 0.00032 16.9 2.6 23 453-475 3-25 (186)
396 >2yz2_A Putative ABC transport 52.6 10 0.0003 17.1 2.4 149 449-636 28-199 (266)
397 >3irv_A Cysteine hydrolase; st 52.4 14 0.0004 16.1 5.3 57 585-641 17-80 (233)
398 >2pcj_A ABC transporter, lipop 52.3 14 0.0004 16.1 3.7 151 448-637 24-202 (224)
399 >1im5_A 180AA long hypothetica 52.3 14 0.0004 16.1 4.0 47 592-638 5-57 (180)
400 >1sgw_A Putative ABC transport 52.3 14 0.0004 16.1 3.5 46 444-494 21-70 (152)
401 >2cjw_A GTP-binding protein GE 52.2 12 0.00035 16.5 2.8 52 455-506 7-64 (192)
402 >1z2a_A RAS-related protein RA 52.0 11 0.00033 16.7 2.6 48 455-502 6-58 (168)
403 >3ber_A Probable ATP-dependent 51.9 14 0.00041 16.1 3.5 46 456-501 82-127 (249)
404 >1g8p_A Magnesium-chelatase 38 51.7 8 0.00024 17.8 1.8 26 453-478 44-69 (218)
405 >1kk8_A Myosin heavy chain, st 51.7 14 0.00041 16.0 3.7 31 465-495 432-467 (490)
406 >1vpl_A ABC transporter, ATP-b 51.6 11 0.00031 16.9 2.4 37 439-475 22-62 (191)
407 >3be4_A Adenylate kinase; mala 51.5 14 0.00041 16.0 3.0 23 452-474 3-25 (153)
408 >3a1s_A Iron(II) transport pro 51.3 13 0.00037 16.3 2.8 24 453-476 4-27 (173)
409 >1cno_A Cytochrome C552; elect 51.3 12 0.00036 16.4 2.7 23 693-715 63-85 (87)
410 >2bdt_A BH3686; alpha-beta pro 51.3 6.8 0.0002 18.4 1.4 14 457-470 5-18 (189)
411 >1c75_A Cytochrome C-553; heme 51.1 11 0.00032 16.8 2.4 21 693-713 51-71 (71)
412 >1cch_A Cytochrome C551; elect 51.1 11 0.00032 16.9 2.4 17 696-712 65-81 (82)
413 >1w7j_A Myosin VA; motor prote 51.0 14 0.00042 16.0 3.6 12 337-348 234-245 (306)
414 >1pw4_A Glycerol-3-phosphate t 50.9 14 0.00042 16.0 10.6 21 64-84 71-91 (229)
415 >1a7j_A Phosphoribulokinase; t 50.9 7.8 0.00023 17.9 1.7 26 456-481 7-32 (290)
416 >1wms_A RAB-9, RAB9, RAS-relat 50.6 13 0.00039 16.2 2.8 50 455-504 8-63 (177)
417 >3kv4_A PHD finger protein 8; 50.5 12 0.00034 16.6 2.5 92 621-712 155-277 (285)
418 >2ipc_A Preprotein translocase 50.4 7 0.00021 18.2 1.3 11 460-470 255-265 (318)
419 >1zp6_A Hypothetical protein A 50.4 13 0.00039 16.2 2.7 23 453-475 8-30 (191)
420 >1gdv_A Cytochrome C6; RED ALG 50.3 5.1 0.00015 19.3 0.6 26 692-717 60-85 (85)
421 >1lkx_A Myosin IE heavy chain; 50.1 15 0.00043 15.9 3.9 36 455-490 379-419 (426)
422 >2d1h_A ST1889, 109AA long hyp 50.1 15 0.00043 15.9 4.6 55 746-800 27-82 (109)
423 >2vxz_A Pyrsv_GP04; viral prot 50.1 15 0.00043 15.9 3.4 37 751-787 20-56 (165)
424 >1qvr_A CLPB protein; coiled c 49.9 7.6 0.00023 18.0 1.5 43 450-497 44-88 (218)
425 >2pze_A Cystic fibrosis transm 49.8 10 0.0003 17.1 2.1 154 444-636 20-191 (229)
426 >3jw4_A Transcriptional regula 49.5 11 0.00032 16.8 2.2 58 745-802 19-79 (101)
427 >1rzw_A Protein AF2095(GR4); b 49.4 15 0.00044 15.8 3.8 48 328-379 57-109 (123)
428 >2exv_A Cytochrome C-551; alph 49.4 13 0.00037 16.4 2.5 20 694-713 63-82 (82)
429 >1oxx_K GLCV, glucose, ABC tra 49.3 7.5 0.00022 18.0 1.4 29 446-474 23-51 (243)
430 >2ghi_A Transport protein; mul 49.2 15 0.00045 15.8 3.6 38 446-488 38-75 (260)
431 >2d0s_A Cytochrome C, cytochro 49.1 11 0.00033 16.8 2.2 18 695-712 61-78 (79)
432 >2hs5_A Putative transcription 49.0 15 0.00045 15.7 3.7 57 737-793 24-89 (94)
433 >2qy9_A Cell division protein 49.0 12 0.00036 16.4 2.4 62 457-520 10-76 (198)
434 >2bbw_A Adenylate kinase 4, AK 48.9 14 0.00041 16.0 2.7 21 451-471 24-44 (182)
435 >1rj9_A FTSY, signal recogniti 48.9 15 0.00045 15.7 5.3 83 457-541 10-96 (198)
436 >1m8p_A Sulfate adenylyltransf 48.9 15 0.00045 15.7 3.4 30 453-482 3-33 (182)
437 >2cdn_A Adenylate kinase; phos 48.7 14 0.00042 16.0 2.7 19 455-473 21-39 (201)
438 >1w2l_A Cytochrome oxidase sub 48.5 12 0.00037 16.4 2.4 16 697-712 48-63 (64)
439 >3cob_A Kinesin heavy chain-li 48.4 8.4 0.00025 17.7 1.5 15 456-470 82-96 (369)
440 >2c9o_A RUVB-like 1; hexameric 48.4 15 0.00046 15.7 3.3 25 456-480 65-89 (365)
441 >1ni3_A YCHF GTPase, YCHF GTP- 48.4 15 0.00046 15.7 2.8 76 452-535 18-108 (243)
442 >1cyi_A Cytochrome C6, cytochr 48.3 14 0.00042 16.0 2.6 22 692-713 62-83 (90)
443 >2c95_A Adenylate kinase 1; AP 48.1 15 0.00044 15.8 2.7 23 453-475 8-30 (196)
444 >2db3_A ATP-dependent RNA heli 48.1 16 0.00046 15.6 3.7 40 456-495 95-138 (271)
445 >2g0t_A Conserved hypothetical 47.9 16 0.00046 15.6 3.5 74 452-531 8-82 (191)
446 >1z0j_A RAB-22, RAS-related pr 47.8 15 0.00046 15.7 2.8 48 456-503 8-61 (170)
447 >2fna_A Conserved hypothetical 47.8 15 0.00044 15.8 2.7 151 456-638 32-183 (208)
448 >3cph_A RAS-related protein SE 47.8 14 0.00042 15.9 2.6 22 456-477 22-43 (213)
449 >1yqt_A RNAse L inhibitor; ATP 47.7 13 0.0004 16.2 2.4 42 592-636 145-187 (213)
450 >2axn_A 6-phosphofructo-2-kina 47.6 8.7 0.00026 17.5 1.5 38 457-496 12-49 (218)
451 >2ohf_A Protein OLA1, GTP-bind 47.5 13 0.00038 16.3 2.3 93 439-539 7-112 (254)
452 >2h5e_A Peptide chain release 47.3 13 0.00039 16.2 2.4 27 450-476 9-35 (207)
453 >3f3x_A Transcriptional regula 47.2 13 0.00037 16.4 2.2 57 746-802 41-98 (122)
454 >1ycc_A Cytochrome C; electron 47.1 15 0.00044 15.8 2.6 20 695-714 89-108 (108)
455 >2hxs_A RAB-26, RAS-related pr 47.1 15 0.00044 15.8 2.6 44 456-499 8-56 (178)
456 >2q83_A YTAA protein; 2635576, 47.0 9.7 0.00029 17.2 1.6 78 325-402 9-95 (117)
457 >1x6v_B Bifunctional 3'-phosph 46.9 9.7 0.00029 17.2 1.6 30 453-482 51-80 (233)
458 >2qi9_C Vitamin B12 import ATP 46.8 16 0.00048 15.5 3.6 41 445-490 17-57 (249)
459 >2p65_A Hypothetical protein P 46.7 16 0.00048 15.5 3.1 45 451-495 40-87 (187)
460 >3cuo_A Uncharacterized HTH-ty 46.5 16 0.00049 15.5 5.2 61 740-800 14-74 (90)
461 >3hsr_A HTH-type transcription 46.5 7 0.00021 18.3 0.8 58 745-802 40-98 (119)
462 >3cuq_A Vacuolar-sorting prote 46.4 17 0.00049 15.5 2.9 47 744-790 6-52 (83)
463 >1ojl_A Transcriptional regula 46.4 14 0.00041 16.0 2.4 37 456-497 27-64 (177)
464 >3fb4_A Adenylate kinase; psyc 46.2 9.8 0.00029 17.2 1.5 17 456-472 2-18 (169)
465 >2iv2_X Formate dehydrogenase 46.2 14 0.00042 16.0 2.4 85 439-529 2-86 (218)
466 >3hdt_A Putative kinase; struc 46.1 17 0.00049 15.4 3.4 25 455-479 15-39 (223)
467 >1j2r_A Hypothetical isochoris 46.0 17 0.0005 15.4 2.9 50 591-640 20-74 (199)
468 >2a5y_B CED-4; apoptosis; HET: 45.9 10 0.0003 17.1 1.6 15 456-470 51-65 (189)
469 >2jn6_A Protein CGL2762, trans 45.6 12 0.00035 16.6 1.9 49 740-788 8-56 (56)
470 >1p6x_A Thymidine kinase; P-lo 45.6 14 0.00041 16.1 2.2 14 459-472 12-25 (334)
471 >1ku9_A Hypothetical protein M 45.6 17 0.0005 15.4 4.4 56 745-800 30-87 (88)
472 >1tf5_A Preprotein translocase 45.5 9.7 0.00029 17.2 1.4 15 456-470 83-97 (266)
473 >2iwr_A Centaurin gamma 1; ANK 45.5 15 0.00044 15.8 2.4 48 456-503 9-60 (178)
474 >1u5t_A Appears to BE function 45.4 14 0.00042 15.9 2.3 45 744-788 7-51 (70)
475 >2o8b_A DNA mismatch repair pr 45.4 17 0.00051 15.4 4.9 149 427-637 52-205 (241)
476 >2pbr_A DTMP kinase, thymidyla 45.3 17 0.00051 15.3 3.6 27 457-483 3-29 (195)
477 >3tmk_A Thymidylate kinase; ph 45.2 17 0.00049 15.5 2.6 19 457-475 8-26 (216)
478 >1f2t_A RAD50 ABC-ATPase; DNA 45.0 17 0.00051 15.3 3.3 27 456-482 25-51 (138)
479 >2pjz_A Hypothetical protein S 44.9 17 0.0005 15.4 2.6 151 445-636 18-186 (263)
480 >2r44_A Uncharacterized protei 44.8 13 0.00038 16.3 1.9 62 587-652 106-176 (226)
481 >1x88_A Kinesin-like protein K 44.7 10 0.00031 17.0 1.5 84 619-723 222-308 (359)
482 >1u8z_A RAS-related protein RA 44.5 18 0.00052 15.3 2.8 22 456-477 6-27 (168)
483 >2gta_A Hypothetical protein Y 44.5 8.2 0.00024 17.7 0.9 19 610-628 67-85 (119)
484 >1wn2_A Peptidyl-tRNA hydrolas 44.4 18 0.00052 15.3 4.1 48 328-379 64-116 (121)
485 >2ia2_A Putative transcription 44.4 9.5 0.00028 17.3 1.2 48 743-790 20-71 (86)
486 >1ji0_A ABC transporter; ATP b 44.4 14 0.0004 16.1 2.0 149 445-635 23-199 (240)
487 >1nkt_A Preprotein translocase 44.3 12 0.00035 16.6 1.7 14 457-470 127-140 (311)
488 >1htw_A HI0065; nucleotide-bin 44.2 18 0.00052 15.3 2.6 26 456-481 35-60 (158)
489 >1ii8_A RAD50 ABC-ATPase; MRE1 44.1 18 0.00053 15.2 3.6 27 456-482 25-51 (138)
490 >1yqt_A RNAse L inhibitor; ATP 44.1 14 0.00041 16.0 2.1 20 456-475 49-68 (276)
491 >1udx_A The GTP-binding protei 44.1 15 0.00044 15.8 2.2 23 456-478 2-24 (177)
492 >1g41_A Heat shock protein HSL 43.7 17 0.0005 15.4 2.4 35 456-497 52-86 (335)
493 >2rn7_A IS629 ORFA; helix, all 43.6 18 0.00054 15.2 2.6 50 741-790 10-65 (108)
494 >2zon_G Cytochrome C551; nitri 43.4 17 0.00051 15.4 2.4 18 697-714 70-87 (87)
495 >2o0y_A Transcriptional regula 43.4 9.2 0.00027 17.4 1.0 41 745-785 27-68 (95)
496 >2owm_A Nckin3-434, related to 43.3 14 0.00042 15.9 2.0 16 456-471 139-154 (443)
497 >2pjh_A Protein NPL4, nuclear 43.2 8.8 0.00026 17.5 0.9 12 675-686 69-80 (80)
498 >1wb9_A DNA mismatch repair pr 43.2 18 0.00054 15.1 4.5 54 426-480 12-66 (201)
499 >3fdi_A Uncharacterized protei 43.1 18 0.00054 15.2 2.5 18 457-474 9-26 (201)
500 >1a56_A C-551, ferricytochrome 42.9 13 0.00039 16.2 1.8 18 695-712 63-80 (81)
No 1
>>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* (A:136-512)
Probab=100.00 E-value=4e-42 Score=334.55 Aligned_cols=375 Identities=51% Similarity=0.766 Sum_probs=336.4
Q ss_pred CCHHHHHCCCCCHHHCCCCCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHC
Q ss_conf 72134302210002104566666678541002023553047740679999999999982995784788852310011102
Q gi|254780799|r 423 VSRVFEKNQCDLAINLGKSIEGKPIIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVY 502 (806)
Q Consensus 423 ~s~~f~~s~~~L~iaLGKdI~G~pvv~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y 502 (806)
++..|+.+...|++..|.+...+++-.|+.+-+|+.|.|.+|||||..+++|+.+++.+.+|.++.|-.+|.+...+..+
T Consensus 1 e~~~~~~~~~~l~~~~G~~~al~~vsl~i~~Ge~~~ivG~SGsGKSTllr~i~~~l~~~~~~G~i~~~g~d~~~~~~~~~ 80 (377)
T 2ius_A 1 DNAKFRDNPSPLTVVLGKDIAGEPVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVY 80 (377)
T ss_dssp TSHHHHTCCCTTEEEEEEETTSCEEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGG
T ss_pred HHHCCCCCCCCCCEEEECCCCCCCEEEEHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHH
T ss_conf 11101244664315640045677157446540635785566742889999999999986670201599852765332442
Q ss_pred CCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 77034312233430456689999999999999999870899689999999988744786677544677654543222332
Q gi|254780799|r 503 DGIPNLLTPVVTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETE 582 (806)
Q Consensus 503 ~~iPHLl~pVvTd~~kA~~aL~w~V~EMe~RY~l~a~~~vRni~~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (806)
..++|-+.-|..|+....+...|...||.+|++.|++.++|+...|+.+..............+.-|-..-. .-
T Consensus 81 ~~~r~~~~~v~q~~~l~~~~~v~~n~~~~~~~~~~~~~~~~~~~~~~l~~v~l~~~~~~~p~~LSGGq~QRv------ai 154 (377)
T 2ius_A 81 EGIPHLLTEVVTDMKDAANALRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMD------AQ 154 (377)
T ss_dssp TTCTTBSSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------------
T ss_pred CCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC------CC
T ss_conf 389765641350479999999999999999999999809632888766787776416876765447886433------35
Q ss_pred CCCCCCCCEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHCCCCEEEEEECCCCCC
Q ss_conf 23234698687763446888873210058899999986641423799996577753554355411025158764586642
Q gi|254780799|r 583 HFDFQHMPYIVVVIDEMADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRISFQVSSKIDS 662 (806)
Q Consensus 583 ~~~~~~lp~ivviiDElaDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPsvdvitg~ikan~p~riaf~v~s~~dS 662 (806)
...+...|.|++..|+++.|-....+++.+.+.+|+|+.++.|||+|+.|+++++-.+.+-|.+|...||.|+..+.-++
T Consensus 155 AraL~~~P~ill~DEP~saLD~~~~~~i~~ll~~L~~~~~~~g~t~i~vTHd~~~a~~~dri~~~~~griv~~~~~~~~~ 234 (377)
T 2ius_A 155 HPVLKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDS 234 (377)
T ss_dssp CCBCCCCCEEEEEEETHHHHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHHHH
T ss_pred CCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 66545411788872389999875338899999999999885395799996576656255779863664158897561333
Q ss_pred HHHCCCCCHHHHCCCCCEEEECCC-CCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC-CCCCCCCCCCC
Q ss_conf 123388645786588754773689-8325888334898899999999971289742110012455666-77888887777
Q gi|254780799|r 663 RTILGEQGAEQLLGQGDMLYMTGG-GRVQRIHGPFVSDIEVEKVVSHLKTQGEAKYIDIKDKILLNEE-MRFSENSSVAD 740 (806)
Q Consensus 663 rtild~~gae~Llg~gdml~~~~~-~~~~r~~g~~v~~~ev~~v~~~~~~q~~~~y~~~~~~~~~~~~-~~~~~~~~~~d 740 (806)
+.+++.+.++.+.+.+++++.+++ ..+.|++++|+...++.+++++++.+..+.|............ ..........+
T Consensus 235 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (377)
T 2ius_A 235 RTILDQAGAESLLGMGDMLYSGPNSTLPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITSDSESEGGAGGFDGAEELD 314 (377)
T ss_dssp HHHHSSSCGGGSCSTTEEEEECTTCSSCEEEEECBCCHHHHHHHHHHHHTTCCCCCCTTSCC------------------
T ss_pred CEECCCCCCHHCCCCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 13126698011025777155147665215520553787999999999996289863222134544566677777877666
Q ss_pred HHHHHHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCCCCCEEEECHHHH
Q ss_conf 038999999996598500014222001177899999999977986802278872673171253
Q gi|254780799|r 741 DLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPASSTGKREILISSMEE 803 (806)
Q Consensus 741 ~l~~~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~~g~~~r~vl~~~~~~ 803 (806)
..+.++++.+...+++|++.+|+.++.|+++++|+++.||+.|+|++++||++|+||+++++|
T Consensus 315 ~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~le~~g~v~~~~~sg~r~vl~~~~~~ 377 (377)
T 2ius_A 315 PLFDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGHNGNREVLAPPPFD 377 (377)
T ss_dssp ---------------------------------------------------------------
T ss_pred HHHHHHHHHHHHCCCEEHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCC
T ss_conf 799999999997196709999864258647999999999977688877789787171899998
No 2
>>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA ATG; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A* (A:183-574)
Probab=100.00 E-value=2.4e-41 Score=328.74 Aligned_cols=375 Identities=52% Similarity=0.804 Sum_probs=335.6
Q ss_pred CCHHHHHCCCCCHHHCCCCCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHC
Q ss_conf 72134302210002104566666678541002023553047740679999999999982995784788852310011102
Q gi|254780799|r 423 VSRVFEKNQCDLAINLGKSIEGKPIIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVY 502 (806)
Q Consensus 423 ~s~~f~~s~~~L~iaLGKdI~G~pvv~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y 502 (806)
+|+.|.-+...|++..|.....+++-.|+.+.+|+.+.|.+|||||..+++|+-++.....+-++++..+|.+..+...+
T Consensus 1 ~s~~~~i~~~~l~~~~G~~~al~~vsl~i~~Ge~~~lvG~SGsGKSTllr~i~gl~~~~~g~~~v~~~~~~~~~~~~~~~ 80 (392)
T 2iut_A 1 SSPEYDEHKSTVPLALGHDIGGRPIITDLAKMPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKMLELSIY 80 (392)
T ss_dssp TSHHHHTCCCSSEEEEEEETTSCEEEEEGGGSCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSSHHHHTT
T ss_pred HHHHCCCCCCCCEEEEEECCCCCEEEECCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHH
T ss_conf 01101134553013332035543366302000407999468874789999999999985892223799972311010122
Q ss_pred CCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 77034312233430456689999999999999999870899689999999988744786677544677654543222332
Q gi|254780799|r 503 DGIPNLLTPVVTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETE 582 (806)
Q Consensus 503 ~~iPHLl~pVvTd~~kA~~aL~w~V~EMe~RY~l~a~~~vRni~~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (806)
..+++....+.+++..+...+.|++.++.+++++.++..-|.+.++.+++.-.......-. ..--|+...-.-
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~e~L~~vgl~~~~~~~p~-------~LSGGq~QRvai 153 (392)
T 2iut_A 81 EGIPHLLCPVVTDMKEAANALRWSVAEMERRYRLMAAMGVRNLAGFNRKVKDAEEAGTPLT-------DPLFRRESPDDE 153 (392)
T ss_dssp TTCTTBSSSCBCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTCCCB-------CTTCCCCSTTCC
T ss_pred CCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC-------CCCCCCCCCCCC
T ss_conf 2674412010164899999999999999999999998092049999999987764288655-------642246664445
Q ss_pred CCCCCCCCEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHCCCCEEEEEECCCCCC
Q ss_conf 23234698687763446888873210058899999986641423799996577753554355411025158764586642
Q gi|254780799|r 583 HFDFQHMPYIVVVIDEMADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRISFQVSSKIDS 662 (806)
Q Consensus 583 ~~~~~~lp~ivviiDElaDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPsvdvitg~ikan~p~riaf~v~s~~dS 662 (806)
.-.+..-|-|++.-..++.|+....++|.+.|.+|+|..|..|+|+|++|+++++-...+-|.++...||.+++++..++
T Consensus 154 ArALa~~P~ill~DEP~saLD~~~~~~i~~ll~~L~~e~~~~g~t~i~vTHd~~~a~~~~~~v~~~~g~iv~~~~~~~~~ 233 (392)
T 2iut_A 154 PPQLSTLPTIVVVVDEFADMMMIVGKKVEELIARIAQKARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDS 233 (392)
T ss_dssp CCBCCCCCEEEEEESCCTTHHHHTCHHHHHHHHHHHHHCTTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHHHH
T ss_pred CCCCCCCCEEEEEEHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 65445686699863489999986528899999999999986395899984678745014679853763279885772324
Q ss_pred HHHCCCCCHHHHCCCCCEEEECCC-CCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC--------C
Q ss_conf 123388645786588754773689-8325888334898899999999971289742110012455666778--------8
Q gi|254780799|r 663 RTILGEQGAEQLLGQGDMLYMTGG-GRVQRIHGPFVSDIEVEKVVSHLKTQGEAKYIDIKDKILLNEEMRF--------S 733 (806)
Q Consensus 663 rtild~~gae~Llg~gdml~~~~~-~~~~r~~g~~v~~~ev~~v~~~~~~q~~~~y~~~~~~~~~~~~~~~--------~ 733 (806)
+.+++.+.++.|++.+++.+.+.+ ..+.|+++++.+..++.+++.+++.++.|.|.+............. .
T Consensus 234 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (392)
T 2iut_A 234 RTILDQGGAEQLLGHGDMLYLPPGTGLPIRVHGAFVSDDEVHRVVEAWKLRGAPDYIEDILAGVDEGGGGGGSFDGGDGS 313 (392)
T ss_dssp HHHHSSSCGGGCCSTTEEEEECTTCSSCEEEEECBCCHHHHHHHHHHHHTTCCCCCCTTSCC------------------
T ss_pred CCCCCCCCHHHCCCCCCCEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 70358789877589998346459982357753451588999999999986289864054430343210012456777777
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCCCCCEEEECHHHHH
Q ss_conf 88877770389999999965985000142220011778999999999779868022788726731712530
Q gi|254780799|r 734 ENSSVADDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPASSTGKREILISSMEEC 804 (806)
Q Consensus 734 ~~~~~~d~l~~~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~~g~~~r~vl~~~~~~~ 804 (806)
......+..+.++++...+.+++|+|.||+.++.||++++|+||+||..|+|+|++||++|+||+.+++++
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~i~~~e~~giv~~~~gs~~~~vl~~~~~~~ 384 (392)
T 2iut_A 314 GEGSEDDPLYDEAVRFVTESRRASISAVQRKLKIGYNRAARMIEAMEMAGVVTPMNTNGSREVIAPAPVRD 384 (392)
T ss_dssp -----------------------------------------------------------------------
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCHH
T ss_conf 78776657999999999971965299998631465348899999999676988877897971737998531
No 3
>>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA ATG; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A* (A:1-182)
Probab=100.00 E-value=2.6e-43 Score=343.47 Aligned_cols=129 Identities=36% Similarity=0.621 Sum_probs=117.2
Q ss_pred HCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCEEEEEEEEECCC
Q ss_conf 00000002222357620366135332001245556325665457899999974248632899841044244444321478
Q gi|254780799|r 292 QNISQSNLINHGTGTFVLPSKEILSTSQSPVNQMTFSPKVMQNNACTLKSVLSDFGIQGEIVNVRPGPVITLYELEPAPG 371 (806)
Q Consensus 292 ~~~~q~~~~~~~~~~YkLPsLdLL~~~~~~~~~~~~s~eeL~~nA~lLE~tL~dFGVe~~Vv~v~pGPVVTrYEi~PApG 371 (806)
....+.........+|+||++|||+.+.. .+...+++++++++++|++||++|||+|+|+++++|||||||||+||||
T Consensus 53 ~~~~~~~~~~~~~~~y~lP~l~LL~~~~~--~~~~~~~~el~~~~~~L~~tL~~FgI~a~v~~i~~GP~VTryEl~pa~G 130 (182)
T 2iut_A 53 LKEKQAPLFVDTAVEGTLPPLSLLDPAEV--KQKSYSPESLEAMSRLLEIKLKEFGVEVSVDSVHPGPVITRFEIQPAAG 130 (182)
T ss_dssp -----------------CCCGGGSCCCCC--CCCCCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEECSSEEEEEECCCTT
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHCCCCCC--CCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCEEEEEEEEECCC
T ss_conf 20004433457788899989767589875--6678899999999999999999779708998546898589999862688
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCC-CCCCCCCEEEEEECCCCCCEEEEHHHC
Q ss_conf 639999978899998863001210-003886125553024566238734230
Q gi|254780799|r 372 IKSSRIIGLSDDIARSMSAISARV-AVIPRRNAIGIELPNDIRETVMLRDLI 422 (806)
Q Consensus 372 VKvSKI~nLadDIA~aLsa~svRI-apIPGK~~VGIEiPN~~r~~V~lreil 422 (806)
||||||+||+|||||+|+|.|||| ||||||++|||||||.+|++|+|||||
T Consensus 131 VKvskI~~L~dDlAlaL~a~siRI~aPIPGK~~VGIEvPN~~r~~V~lreil 182 (182)
T 2iut_A 131 VKVSRISNLAKDLARSLAVISVRVVEVIPGKTTVGIEIPNEDRQMVRFSEVL 182 (182)
T ss_dssp CCHHHHHHTHHHHHHHHTCSCCEEESCCTTSSCEEEEEECTTCCCCBHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCEEEEECCCCCCCCCCHHHHH
T ss_conf 6489999899999999844565242024786125785367676434504322
No 4
>>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* (A:1-135)
Probab=100.00 E-value=4.9e-40 Score=318.98 Aligned_cols=118 Identities=42% Similarity=0.675 Sum_probs=111.5
Q ss_pred CCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCEEEEEEEEECCCCCHHHHHHHHH
Q ss_conf 35762036613533200124555632566545789999997424863289984104424444432147863999997889
Q gi|254780799|r 303 GTGTFVLPSKEILSTSQSPVNQMTFSPKVMQNNACTLKSVLSDFGIQGEIVNVRPGPVITLYELEPAPGIKSSRIIGLSD 382 (806)
Q Consensus 303 ~~~~YkLPsLdLL~~~~~~~~~~~~s~eeL~~nA~lLE~tL~dFGVe~~Vv~v~pGPVVTrYEi~PApGVKvSKI~nLad 382 (806)
...+|+||+++||+.++. .....++++++++++.|++||++|||+|+|+++++||||||||++|+||||||||+||+|
T Consensus 17 ~~~~y~lP~~~LL~~~~~--~~~~~~~~el~~~~~~l~~tl~~F~I~~~v~~~~~GP~VTryEi~p~~GvKvskI~~L~d 94 (135)
T 2ius_A 17 HKPTTPLPSLDLLTPPPS--EVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISNLSR 94 (135)
T ss_dssp ------CCCGGGSCCC----------CHHHHHHHHHHHHHHTTTTCCEEEEEEEECSSEEEEEEEECTTCCTHHHHTTHH
T ss_pred CCCCCCCCCHHHCCCCCC--CCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCEEEEEEEECCCCCCHHHHHHHHH
T ss_conf 798999979778479974--667789999999999999999977960899821569879999986289987999875899
Q ss_pred HHHHHHHHCCCCC-CCCCCCCEEEEEECCCCCCEEEEHHHC
Q ss_conf 9998863001210-003886125553024566238734230
Q gi|254780799|r 383 DIARSMSAISARV-AVIPRRNAIGIELPNDIRETVMLRDLI 422 (806)
Q Consensus 383 DIA~aLsa~svRI-apIPGK~~VGIEiPN~~r~~V~lreil 422 (806)
||||+|+|.|||| ||||||++|||||||.+|++|+|||||
T Consensus 95 Dlal~L~a~svRI~apIPGK~~VGIEvPN~~r~~V~lreil 135 (135)
T 2ius_A 95 DLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVL 135 (135)
T ss_dssp HHHHHTTCSCCEEESCCTTSSSEEEEEECSSCCCCBHHHHH
T ss_pred HHHHHHCCCCCEEEEECCCCCEEEEEEECCCCCCCCHHHHH
T ss_conf 99998468861277505997379888641555411146433
No 5
>>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} (A:)
Probab=99.91 E-value=2.5e-25 Score=208.79 Aligned_cols=72 Identities=44% Similarity=0.653 Sum_probs=68.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCCCCCEEEECHHHHH
Q ss_conf 888877770389999999965985000142220011778999999999779868022788726731712530
Q gi|254780799|r 733 SENSSVADDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPASSTGKREILISSMEEC 804 (806)
Q Consensus 733 ~~~~~~~d~l~~~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~~g~~~r~vl~~~~~~~ 804 (806)
+++.++.||||++|+++|+++|++|||+|||||||||||||||||+||++|||||++|+|||+||+++++++
T Consensus 2 ~~~~~~~D~l~~~a~~~V~~~~~~S~S~lQR~lrIGynRAariid~LE~~GiVsp~~g~~~ReVL~~~~~~d 73 (73)
T 2ve8_A 2 SGEGSEDDPLYDEAVRFVTESRRASISAVQRKLKIGYNRAARMIEAMEMAGVVTPMNTNGSREVIAPAPVRD 73 (73)
T ss_dssp -----CCCTTHHHHHHHHHHHCCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSBCCCCTTSCCCBCSCCCCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCC
T ss_conf 988765558999999999981853489999997015249999999999887678877898885749999988
No 6
>>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} (A:24-137,A:224-347,A:402-437)
Probab=99.76 E-value=8.2e-19 Score=160.02 Aligned_cols=205 Identities=21% Similarity=0.247 Sum_probs=141.5
Q ss_pred HHHCCCCCC-CCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHH-CCCCHHHHCCC
Q ss_conf 021045666-6667854100202355304774067999999999998299578478885231001110-27703431223
Q gi|254780799|r 435 AINLGKSIE-GKPIIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSV-YDGIPNLLTPV 512 (806)
Q Consensus 435 ~iaLGKdI~-G~pvv~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~-Y~~iPHLl~pV 512 (806)
....|.++. |...+.+..+.||+||+|+||||||+.+++||.+++.+.. ++++||||.-.+.. |...+|...+
T Consensus 10 ~~~~~~~i~~~~~~~~~~~~~~H~li~G~TGsGKT~~l~~li~~l~~~~~----~~~iiD~kg~~~~~~~~~~~~~~~~- 84 (274)
T 1e9r_A 10 TREKAKQVTVAGVPMPRDAEPRHLLVNGATGTGKSVLLRELAYTGLLRGD----RMVIVDPNGDMLSKFGRDKDIILNP- 84 (274)
T ss_dssp HCCSSCCCEETTEECCGGGGGGCEEEEECTTSSHHHHHHHHHHHHHHTTC----EEEEEEETTHHHHHHCCTTCEEECT-
T ss_pred HHCCCCCCEECCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCC----CEEEEECCHHHHHHHHCCCCEEECC-
T ss_conf 86027773168851776656365899927999889999999999985899----8899979667999873457758677-
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-------HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC---C----
Q ss_conf 34304566899999999999999998708996-------899999999887447866775446776545432---2----
Q gi|254780799|r 513 VTNPQKAVTVLKWLVCEMEERYQKMSKIGVRN-------IDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEA---I---- 578 (806)
Q Consensus 513 vTd~~kA~~aL~w~V~EMe~RY~l~a~~~vRn-------i~~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~---~---- 578 (806)
.+.++...+.|.+.||++||++|++.+++| +..+.+ .+++.- +....+++..+. .
T Consensus 85 --~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~f~l~~~~~-------~~~~~~--i~i~~~~~~~~~~~~~~~~~ 153 (274)
T 1e9r_A 85 --YDQRTKGWSFFNEIRNDYDWQRYALSVVPRMPDGDFSIRSWLE-------DPNGGN--LFITWREDMGPALRPLISAW 153 (274)
T ss_dssp --TBTTCCCCCGGGGCCSTTHHHHHHHHHSCBSCCCCCCHHHHHH-------CTTCCC--EEEEECGGGHHHHHHHHHHH
T ss_pred --CCCCCCCCCCHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHH-------CCCCCE--EEEECCCCHHHHHHHHHHHH
T ss_conf --8877877682222047789999999985237765667799972-------678838--99971700567999999999
Q ss_pred ----CC-CCCCCCCCCCEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCC--CC----CCHHHHHC
Q ss_conf ----23-322323469868776344688887321005889999998664142379999657775--35----54355411
Q gi|254780799|r 579 ----YE-TEHFDFQHMPYIVVVIDEMADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPSV--DV----ITGTIKAN 647 (806)
Q Consensus 579 ----~~-~~~~~~~~lp~ivviiDElaDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPsv--dv----itg~ikan 647 (806)
+. -....-..=+.+.+++||+..++.. ..+..+...+|..|+++++|||.|+= ++ ....|-+|
T Consensus 154 ~~~l~~~~~~~~~~~~~~~~~~iDE~~~~~~~------~~~~~~~~~~R~~g~~~~~~~Qs~~ql~~~~g~~~~~~il~n 227 (274)
T 1e9r_A 154 VDVVCTSILSLPEEPKRRLWLFIDELASLEKL------ASLADALTKGRKAGLRVVAGLQSTSQLDDVYGVKEAQTLRAS 227 (274)
T ss_dssp HHHHHHHGGGSCCCTTCCEEEEESCGGGSCBC------SSHHHHHHHCTTTTEEEEEEESCHHHHHHHHCHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCCCCCEEEEEHHHHHHCCCC------HHHHHHHHHHCCCCCEEEEEECCHHHHHHHHCHHHHHHHHHH
T ss_conf 99999999863557898079861265541451------658899997366896799996359999987678899999985
Q ss_pred CCCEEEEEECCCCC
Q ss_conf 02515876458664
Q gi|254780799|r 648 FPTRISFQVSSKID 661 (806)
Q Consensus 648 ~p~riaf~v~s~~d 661 (806)
..++|.|++...-+
T Consensus 228 ~~~~i~~~~~d~~~ 241 (274)
T 1e9r_A 228 FRSLVVLGGSRDLT 241 (274)
T ss_dssp CCEEEEEECCTTTE
T ss_pred CCCEEEECCCCCCC
T ss_conf 78769963899984
No 7
>>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} (A:1-196)
Probab=96.83 E-value=0.039 Score=35.13 Aligned_cols=146 Identities=19% Similarity=0.239 Sum_probs=93.2
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHH-HHHHCCCCHHHHCCCCCCHHH-HHHHHHHHHHHHH
Q ss_conf 20235530477406799999999999829957847888523100-111027703431223343045-6689999999999
Q gi|254780799|r 454 MPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKML-ELSVYDGIPNLLTPVVTNPQK-AVTVLKWLVCEME 531 (806)
Q Consensus 454 MPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~v-Els~Y~~iPHLl~pVvTd~~k-A~~aL~w~V~EMe 531 (806)
-+|+||-|..|+||+-.++++.-.+-.+..+..+....--+... ....+..+.+-+........+ ....++++....
T Consensus 45 ~~~vli~GppG~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 123 (196)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAV- 123 (196)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHH-
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_conf 9838998999781999999999986520389860798311441432678899987630234433256999999999988-
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCCHHH
Q ss_conf 99999987089968999999998874478667754467765454322233223234698687763446888873210058
Q gi|254780799|r 532 ERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVARKDIE 611 (806)
Q Consensus 532 ~RY~l~a~~~vRni~~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ivviiDElaDlmm~~~~~ve 611 (806)
.+...+.++++||+-.+.......+-
T Consensus 124 ------------------------------------------------------~~~~~~~~~~iDe~~~~~~~~~~~~l 149 (196)
T 2qby_A 124 ------------------------------------------------------RDYGSQVVIVLDEIDAFVKKYNDDIL 149 (196)
T ss_dssp ------------------------------------------------------HTCCSCEEEEEETHHHHHHSSCSTHH
T ss_pred ------------------------------------------------------HHCCCCCEEEEECCCHHHHHHHHHHH
T ss_conf ------------------------------------------------------75068761665222112121000689
Q ss_pred HHHHHHHHHHHHCCEEEEEEECCCC-CCCCCHHHHHCCC-CEEEE
Q ss_conf 8999999866414237999965777-5355435541102-51587
Q gi|254780799|r 612 SAVQRLAQMARASGIHVIMATQRPS-VDVITGTIKANFP-TRISF 654 (806)
Q Consensus 612 ~~i~rlaq~ara~GiHli~aTqrPs-vdvitg~ikan~p-~riaf 654 (806)
..+.++-......++-+|.+|.|.. .+-+..-++.-|- .+|-|
T Consensus 150 ~~l~~~~~~~~~~~vi~I~~tn~~~~~~~l~~~l~~R~~~~~i~~ 194 (196)
T 2qby_A 150 YKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIF 194 (196)
T ss_dssp HHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEE
T ss_pred HHHHHHHHHHCCCCEEEEEECCCHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 999886776417856999605854432001452011345543346
No 8
>>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} (A:1-200)
Probab=96.34 E-value=0.018 Score=37.64 Aligned_cols=135 Identities=13% Similarity=0.076 Sum_probs=74.7
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 00202355304774067999999999998299578478885231001110277034312233430456689999999999
Q gi|254780799|r 452 ARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEME 531 (806)
Q Consensus 452 akMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~iPHLl~pVvTd~~kA~~aL~w~V~EMe 531 (806)
.+.+|+||-|.+|+|||..++.+.-.+-........+...++-.--+ +.... ..+.+....
T Consensus 42 ~~~~~ili~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~---~~~~~--------------~~~~~~~~~-- 102 (200)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH---RETPY--------------RVASAIAEA-- 102 (200)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT---SCSHH--------------HHHHHHHHH--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCHH---CCCHH--------------HHHHHHHHH--
T ss_conf 99984999899978299999999998630302336776368731100---14188--------------999999998--
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCC-CHH
Q ss_conf 9999998708996899999999887447866775446776545432223322323469868776344688887321-005
Q gi|254780799|r 532 ERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVAR-KDI 610 (806)
Q Consensus 532 ~RY~l~a~~~vRni~~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ivviiDElaDlmm~~~-~~v 610 (806)
................+++.+.. .+.-.+.++++||+-.+..... ++.
T Consensus 103 --~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~l~iDe~~~~~~~~~~~~~ 151 (200)
T 2v1u_A 103 --VGVRVPFTGLSVGEVYERLVKRL-----------------------------SRLRGIYIIVLDEIDFLPKRPGGQDL 151 (200)
T ss_dssp --HSCCCCSSCCCHHHHHHHHHHHH-----------------------------TTSCSEEEEEEETTTHHHHSTTHHHH
T ss_pred --HHHHHCCCCCHHHHHHHHHHHHH-----------------------------HCCCCCCEEHHHHHHHHHCCCCCCHH
T ss_conf --74442023411688999998653-----------------------------10254200001345543013444028
Q ss_pred HHHHHHHHHHH-HHCCEEEEEEECCCC
Q ss_conf 88999999866-414237999965777
Q gi|254780799|r 611 ESAVQRLAQMA-RASGIHVIMATQRPS 636 (806)
Q Consensus 611 e~~i~rlaq~a-ra~GiHli~aTqrPs 636 (806)
...+.++.... ...++-+|.||.|+.
T Consensus 152 ~~~l~~~~~~~~~~~~~~ii~~t~~~~ 178 (200)
T 2v1u_A 152 LYRITRINQELGDRVWVSLVGITNSLG 178 (200)
T ss_dssp HHHHHHGGGCC-----CEEEEECSCST
T ss_pred HHHHHHHHHHHHCCCCCEEEECCCHHH
T ss_conf 888887666641157620231140667
No 9
>>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Bacteriophage T7} (A:24-296)
Probab=96.15 E-value=0.0067 Score=40.86 Aligned_cols=178 Identities=11% Similarity=0.066 Sum_probs=91.7
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHC-------CCCH--HHHCCCCCCHHHHHHHHHHHH
Q ss_conf 3553047740679999999999982995784788852310011102-------7703--431223343045668999999
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVY-------DGIP--NLLTPVVTNPQKAVTVLKWLV 527 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y-------~~iP--HLl~pVvTd~~kA~~aL~w~V 527 (806)
.+|+|.+|+|||.....+......+ ...+.+.+++.+-.-.+. .+.+ ++......+-......-.++.
T Consensus 15 ~~i~G~~G~GKT~l~~~~~~~~~~~---~g~~vl~~~~e~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (273)
T 1cr0_A 15 IMVTSGSGMGKSTFVRQQALQWGTA---MGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQWFDE 91 (273)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT---SCCCEEEEESSSCHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHTHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHH---HHCCCCEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 9999789985999999999987774---2002021001010235677899986456632112244320247788888775
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCC
Q ss_conf 99999999998708996899999999887447866775446776545432223322323469868776344688887321
Q gi|254780799|r 528 CEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVAR 607 (806)
Q Consensus 528 ~EMe~RY~l~a~~~vRni~~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ivviiDElaDlmm~~~ 607 (806)
..+..+.......+..+...+-+++...... ..--++|||-+..++....
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~viD~i~~~~~~~~ 141 (273)
T 1cr0_A 92 LFGNDTFHLYDSFAEAETDRLLAKLAYMRSG------------------------------LGCDVIILDHISIVVSASG 141 (273)
T ss_dssp HHSSSCEEEECCCCSCCHHHHHHHHHHHHHT------------------------------TCCSEEEEEEEC-------
T ss_pred HCCCCCEEEECCCCCHHHHHHHHHHHHHCCC------------------------------CCCEEEEEECCCEECCCCC
T ss_conf 2035541441133312689999986431015------------------------------7832999965300003465
Q ss_pred -----CHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHCCCCEEEEEECC----CCCCHHHCC
Q ss_conf -----005889999998664142379999657775355435541102515876458----664212338
Q gi|254780799|r 608 -----KDIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRISFQVSS----KIDSRTILG 667 (806)
Q Consensus 608 -----~~ve~~i~rlaq~ara~GiHli~aTqrPsvdvitg~ikan~p~riaf~v~s----~~dSrtild 667 (806)
.++...+..|..+|+-.|+|.++.+|--...--.+.-...-++.-.+.-++ -+|.+.+|.
T Consensus 142 ~~~~~~~~~~~~~~L~~~a~~~~~~vi~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~l~ 210 (273)
T 1cr0_A 142 ESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALE 210 (273)
T ss_dssp ----CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHCEEEEEEEEE
T ss_conf 532289999999999999863377457543146211544434565421221223530211400999998
No 10
>>2is6_A DNA helicase II; hydrolase/DNA complex; HET: DNA ADP; 2.20A {Escherichia coli} PDB: 2is2_A* 2is1_A* 2is4_A* (A:1-106,A:189-283)
Probab=96.12 E-value=0.0064 Score=41.04 Aligned_cols=71 Identities=18% Similarity=0.259 Sum_probs=48.4
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 02355304774067999999999998299578478885231001110277034312233430456689999999999999
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEMEERY 534 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~iPHLl~pVvTd~~kA~~aL~w~V~EMe~RY 534 (806)
.|+||-|.+||||+..+=..|.-++++...+..|.+++=|- +-+++||.+|.
T Consensus 23 ~~~lV~g~aGsGKT~~~~~~i~~ll~~~~~~~~~il~~t~t----------------------------~~a~~~l~~~l 74 (201)
T 2is6_A 23 SNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFT----------------------------NKAAAEMRHRI 74 (201)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTSCCCGGGEEEEESS----------------------------HHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECC----------------------------HHHHHHHHHHH
T ss_conf 99899982865999999999999998199993409998140----------------------------99999999999
Q ss_pred HHH-----HHCCCCCHHHHHHHHH
Q ss_conf 999-----8708996899999999
Q gi|254780799|r 535 QKM-----SKIGVRNIDGFNLKVA 553 (806)
Q Consensus 535 ~l~-----a~~~vRni~~yN~k~~ 553 (806)
.-. ....|+.+.+|-.++.
T Consensus 75 ~~~~~~~~~~~~v~t~h~~~~~~l 98 (201)
T 2is6_A 75 GQLMGTSQGGMWVGTFHGLAHRLL 98 (201)
T ss_dssp HHHHCSCCTTCEEEEHHHHHHHHH
T ss_pred HHHCCCCCCCEEEEEHHHHHHHHH
T ss_conf 986277768839974999999999
No 11
>>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} (A:1-102,A:185-277)
Probab=95.87 E-value=0.004 Score=42.58 Aligned_cols=115 Identities=17% Similarity=0.166 Sum_probs=61.5
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 02023553047740679999999999982995784788852310011102770343122334304566899999999999
Q gi|254780799|r 453 RMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEMEE 532 (806)
Q Consensus 453 kMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~iPHLl~pVvTd~~kA~~aL~w~V~EMe~ 532 (806)
.-.+++|-|-||||||..+-..+..++++.....-|.+.+=|- +-++++|-+
T Consensus 14 ~~~~~lV~g~~GsGKT~~~~~~~~~ll~~~~~~~~~il~v~~t----------------------------~~a~~~~~~ 65 (195)
T 1uaa_A 14 VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFT----------------------------NKAAREMKE 65 (195)
T ss_dssp CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESS----------------------------HHHHHHHHH
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHEEEECCH----------------------------HHHHHHHHH
T ss_conf 9989899980844799999999999998089896049987553----------------------------999999999
Q ss_pred HHHH-HHHCC-----CCCHHHHHHHHHHH--HHCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCEEEEEHHHHHHH
Q ss_conf 9999-98708-----99689999999988--7447866775446776545432223--3223234698687763446888
Q gi|254780799|r 533 RYQK-MSKIG-----VRNIDGFNLKVAQY--HNTGKKFNRTVQTGFDRKTGEAIYE--TEHFDFQHMPYIVVVIDEMADL 602 (806)
Q Consensus 533 RY~l-~a~~~-----vRni~~yN~k~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~lp~ivviiDElaDl 602 (806)
|..- +...+ ++++.++-.+.... ...+.+ +-... ...... .+....-.-||=.|+|||.-|+
T Consensus 66 ~i~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~--d~~~~------a~~~l~~~~~~~~~~~~~~~~i~iDE~QD~ 137 (195)
T 1uaa_A 66 RVGQTLGRKEARGLMISTFHTLGLDIIKREYAALGMK--DLILL------PTLLLQANEEVRKRWQNKIRYLLVDEYQDT 137 (195)
T ss_dssp HHHHHSCTTTTTTSEEEEHHHHHHHHHHHHHHHTTCC--HHHHH------HHHHHHHCHHHHHHHHTTCSEEEESCGGGC
T ss_pred HHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCC--HHHHH------HHHHHHCCHHHHHHHHHHHHHCCCHHHCCC
T ss_conf 9998728422378789609999999999989982899--88887------777651181888998864100010110012
Q ss_pred H
Q ss_conf 8
Q gi|254780799|r 603 M 603 (806)
Q Consensus 603 m 603 (806)
.
T Consensus 138 ~ 138 (195)
T 1uaa_A 138 N 138 (195)
T ss_dssp B
T ss_pred C
T ss_conf 3
No 12
>>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A (A:191-454)
Probab=95.65 E-value=0.056 Score=33.99 Aligned_cols=50 Identities=18% Similarity=0.210 Sum_probs=40.3
Q ss_pred CCCEEEEEHHHHHHHHHHC------CCHHHHHHHHHHHHHHHCCEEEEEEECCCCC
Q ss_conf 6986877634468888732------1005889999998664142379999657775
Q gi|254780799|r 588 HMPYIVVVIDEMADLMMVA------RKDIESAVQRLAQMARASGIHVIMATQRPSV 637 (806)
Q Consensus 588 ~lp~ivviiDElaDlmm~~------~~~ve~~i~rlaq~ara~GiHli~aTqrPsv 637 (806)
..+.-+||||-+..++... .+.+...+..|.++|+--|++.|+..|..+.
T Consensus 121 ~~~~~~ivIDsl~~~~~~~~~~~~~~~~~~~~~~~L~~la~~~~~~vi~~~~~~~~ 176 (264)
T 2r6a_A 121 ESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRS 176 (264)
T ss_dssp TTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTT
T ss_pred HCCCCEEEEECHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCC
T ss_conf 14996899951132134577776699999999999999999969928998346811
No 13
>>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} (A:179-444)
Probab=95.36 E-value=0.05 Score=34.34 Aligned_cols=48 Identities=21% Similarity=0.259 Sum_probs=36.1
Q ss_pred CCEEEEEHHHHHHHHHHCC--------CHHHHHHHHHHHHHHHCCEEEEEEECCCC
Q ss_conf 9868776344688887321--------00588999999866414237999965777
Q gi|254780799|r 589 MPYIVVVIDEMADLMMVAR--------KDIESAVQRLAQMARASGIHVIMATQRPS 636 (806)
Q Consensus 589 lp~ivviiDElaDlmm~~~--------~~ve~~i~rlaq~ara~GiHli~aTqrPs 636 (806)
..+=++|||.+.-|.-..+ .++-....+|.+.|+-.+++.|+.+|...
T Consensus 131 ~~~~~iviD~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~a~~~~~~vi~~~~~~~ 186 (266)
T 2q6t_A 131 NQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSR 186 (266)
T ss_dssp SCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCG
T ss_pred CCCCEEEEEEHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCC
T ss_conf 56774787413333202457764219999999999999999970996999852585
No 14
>>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} (A:184-444)
Probab=95.19 E-value=0.031 Score=35.89 Aligned_cols=50 Identities=24% Similarity=0.251 Sum_probs=38.6
Q ss_pred CCCCEEEEEHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHCCEEEEEEECCCC
Q ss_conf 46986877634468888732-----100588999999866414237999965777
Q gi|254780799|r 587 QHMPYIVVVIDEMADLMMVA-----RKDIESAVQRLAQMARASGIHVIMATQRPS 636 (806)
Q Consensus 587 ~~lp~ivviiDElaDlmm~~-----~~~ve~~i~rlaq~ara~GiHli~aTqrPs 636 (806)
.....-+||||-+..++-.. .......+..|.++|+--|++.++.+|-+.
T Consensus 124 ~~~~~~~iviD~~~~~~~~~~~~~~~~~~~~~~~~L~~la~~~~~~vi~i~~~~~ 178 (261)
T 3bgw_A 124 NPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQLSR 178 (261)
T ss_dssp SCSSCEEEEEECSTTSBCSCSSSCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCG
T ss_pred HCCCCCEEEEHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 2478762420365402678677789999999999999999984897788631574
No 15
>>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} (A:50-315)
Probab=94.97 E-value=0.047 Score=34.51 Aligned_cols=147 Identities=15% Similarity=0.066 Sum_probs=71.5
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCC---------CHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 355304774067999999999998299578478885231001110277---------03431223343045668999999
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDG---------IPNLLTPVVTNPQKAVTVLKWLV 527 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~---------iPHLl~pVvTd~~kA~~aL~w~V 527 (806)
.+|+|.||+|||-....+....+.+..+ .+.++.-+-.-.++.. ..++.....-........+.+.+
T Consensus 22 ~~i~G~~G~GKT~l~~~~~~~~~~~g~~----~~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (266)
T 3bh0_A 22 VLIAARPSMGKTAFALKQAKNMSDNDDV----VNLHSLEMGKKENIKRLIVTAGSINAQKIKAARRDFASEDWGKLSMAI 97 (266)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTTCE----EEEEESSSCHHHHHHHHHHHHTTCCHHHHHSCHHHHCSSCHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHCCCC----EEEEECCCCHHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 9951423441489999999987501472----589622640789999999997376613332023310177888999998
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCC
Q ss_conf 99999999998708996899999999887447866775446776545432223322323469868776344688887321
Q gi|254780799|r 528 CEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVAR 607 (806)
Q Consensus 528 ~EMe~RY~l~a~~~vRni~~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ivviiDElaDlmm~~~ 607 (806)
.+...+.-.+....-.....--..+... ......-..+++||.+.++.--..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~i~~~~~~~~~~~ 149 (266)
T 3bh0_A 98 GEISNSNINIFDKAGQSVNYIWSKTRQT----------------------------KRKNPGKRVIVMIDYLQLLEPAKA 149 (266)
T ss_dssp HHHHTSCEEEECCSCCBHHHHHHHHHHH----------------------------HHTSSSCCEEEEEECGGGSBCSCT
T ss_pred HHHCCCCCCCCCCCCCCCCHHHHHHHHH----------------------------HHHCCCCCCEEEHHHHHHCCCCCC
T ss_conf 6530266434567532200788898887----------------------------652157653110156652267888
Q ss_pred -----CHHHHHHHHHHHHHHHCCEEEEEEECCC
Q ss_conf -----0058899999986641423799996577
Q gi|254780799|r 608 -----KDIESAVQRLAQMARASGIHVIMATQRP 635 (806)
Q Consensus 608 -----~~ve~~i~rlaq~ara~GiHli~aTqrP 635 (806)
..+...+.+|.++|+--++..|+.+|-.
T Consensus 150 ~~~~~~~l~~~~~~L~~~a~~~~~~vi~~~~~~ 182 (266)
T 3bh0_A 150 NDSRTNQISQISRDLKKMARELDVVVIALSQLS 182 (266)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHTCEEEEEECCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 767999999999999999997478779984376
No 16
>>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* (A:1-145,A:250-415)
Probab=94.76 E-value=0.35 Score=28.03 Aligned_cols=167 Identities=14% Similarity=0.135 Sum_probs=89.0
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHH---------------------HHHHHCCHHHEEEEE----ECCC------------
Q ss_conf 020235530477406799999999---------------------999829957847888----5231------------
Q gi|254780799|r 453 RMPHLLIAGTTGSGKSVAINTMIL---------------------SLLYRMTPAQCRLIM----IDPK------------ 495 (806)
Q Consensus 453 kMPHLLIAGtTGSGKSV~iN~iI~---------------------SlLyk~~P~evklil----iDPK------------ 495 (806)
+.|+.|+.|.|||||+.+.=..+. .+.-...+..++..+ .+++
T Consensus 31 ~~~~~ll~~~tGsGKT~va~~~i~~~~~~vlilvPt~~La~Q~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~ 110 (311)
T 2d7d_A 31 GKKHQTLLGATGTGKTFTVSNLIKEVNKPTLVIAHNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIE 110 (311)
T ss_dssp TCSEEEEEECTTSCHHHHHHHHHHHHCCCEEEECSSHHHHHHHHHHHHHHCTTSEEEEECCCEEEEECCEEETTTTEEEC
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCHHHHHH
T ss_conf 99868986778749999999999984999899918999999999999976698738977750023783003883143664
Q ss_pred -------HHHHHHCCCCHHHHCC-----------CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC----CHHHHHHHHH
Q ss_conf -------0011102770343122-----------33430456689999999999999999870899----6899999999
Q gi|254780799|r 496 -------MLELSVYDGIPNLLTP-----------VVTNPQKAVTVLKWLVCEMEERYQKMSKIGVR----NIDGFNLKVA 553 (806)
Q Consensus 496 -------~vEls~Y~~iPHLl~p-----------VvTd~~kA~~aL~w~V~EMe~RY~l~a~~~vR----ni~~yN~k~~ 553 (806)
.+++-+.++..||+.. +|.++..-..|++-.-+|++.|.+.|.+.+-. +|..+=+...
T Consensus 111 ~~~~~~~~~~~~iid~~h~l~~~~~~v~~~~l~l~i~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~ 190 (311)
T 2d7d_A 111 KDASINDEIDKLRHSATSALFERRDVIIIASVSCIVTRAEKMEKAIQNIEKELEEQLKVMHENGKLLEAQRLEQRTRYDL 190 (311)
T ss_dssp CEEEECHHHHHHHHHHHHHHHHCSCEEEEECGGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 54033089999999999987348984254026766553999999876456555544566564222788898999999999
Q ss_pred HHHHCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCE-EEEEHHHHHHHHHHCC---CHHHHHHHHHHHHHH
Q ss_conf 88744786677--544677654543222332232346986-8776344688887321---005889999998664
Q gi|254780799|r 554 QYHNTGKKFNR--TVQTGFDRKTGEAIYETEHFDFQHMPY-IVVVIDEMADLMMVAR---KDIESAVQRLAQMAR 622 (806)
Q Consensus 554 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~lp~-ivviiDElaDlmm~~~---~~ve~~i~rlaq~ar 622 (806)
+....|..... ..-.-+.++... ++-.--++-||- -+|++||.+-++=.+. +|-.+....+-+.++
T Consensus 191 e~l~~~~~~~~~~~y~~y~y~~~~~---~~~~sl~DY~~~d~li~~De~~ri~e~~~~~~~e~~e~~~~~le~G~ 262 (311)
T 2d7d_A 191 EMMREMGFCSGIENYSRHLTLRPPG---STPYTLLDYFPDDFMIVVDESHVTIPQVRGMFNGDQARKQVLVDHGF 262 (311)
T ss_dssp HHHHHHSCCTTGGGGHHHHTTCCTT---CCCBCGGGGSCSSCEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHCCCCCCHHHHHHHCCCCCC---CCCCHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9998637578811112221145767---77501333146665599822777899986301668888988886020
No 17
>>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} (A:147-418)
Probab=94.57 E-value=0.052 Score=34.22 Aligned_cols=36 Identities=25% Similarity=0.502 Sum_probs=28.7
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCC
Q ss_conf 2355304774067999999999998299578478885231
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPK 495 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK 495 (806)
.+||+|.||||||-.+++++-.+ .+++..++.+|+-
T Consensus 23 ~ili~G~tGsGKTtl~~al~~~~----~~~~~~~~~~e~~ 58 (272)
T 1p9r_A 23 IILVTGPTGSGKSTTLYAGLQEL----NSSERNILTVEDP 58 (272)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH----CCTTSCEEEEESS
T ss_pred EEEEECCCCCCCCHHHHHHHHHH----CCCCCEEEEECCC
T ss_conf 79996789886426899875461----4688459996167
No 18
>>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis 1330} (A:144-361)
Probab=94.54 E-value=0.038 Score=35.22 Aligned_cols=46 Identities=26% Similarity=0.362 Sum_probs=30.6
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCCHH
Q ss_conf 2355304774067999999999998299578478885231001110277034
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPN 507 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~iPH 507 (806)
.+||||.|||||+-.+|++ +....|++--+++-||= |+..=+..+|
T Consensus 34 ~ili~G~tgSGKTT~l~aL----~~~~~~~~~iv~iEd~~--E~~l~~~~~~ 79 (218)
T 2gza_A 34 VIVVAGETGSGKTTLMKAL----MQEIPFDQRLITIEDVP--ELFLPDHPNH 79 (218)
T ss_dssp CEEEEESSSSCHHHHHHHH----HTTSCTTSCEEEEESSS--CCCCTTCSSE
T ss_pred CEEEEECCCCCHHHHHHHH----HHHHHHCCCEEEEECCH--HHHCCCCCCC
T ss_conf 4899807988668999999----97642135505750544--4314545663
No 19
>>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} (A:1-192)
Probab=94.51 E-value=0.17 Score=30.27 Aligned_cols=58 Identities=10% Similarity=0.200 Sum_probs=37.2
Q ss_pred CCEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHH--HCCEEEEEEECCC-CCCCCCHHHHHCCC
Q ss_conf 9868776344688887321005889999998664--1423799996577-75355435541102
Q gi|254780799|r 589 MPYIVVVIDEMADLMMVARKDIESAVQRLAQMAR--ASGIHVIMATQRP-SVDVITGTIKANFP 649 (806)
Q Consensus 589 lp~ivviiDElaDlmm~~~~~ve~~i~rlaq~ar--a~GiHli~aTqrP-svdvitg~ikan~p 649 (806)
-++-++++||.-.+. ..........|-...+ .+.+-+|.+|.|- .+|.+..-++.-|-
T Consensus 124 ~~~~~~~lde~d~~~---~~~~~~ll~~l~~~~~~~~~~i~iI~~tn~~~~~~~l~~~i~sR~~ 184 (192)
T 1fnn_A 124 DLYMFLVLDDAFNLA---PDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMG 184 (192)
T ss_dssp TCCEEEEEETGGGSC---HHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHT
T ss_pred CCCCEEEEEHHHHCC---CCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHCCCHHHHHCC
T ss_conf 575057520233124---3200246666676531456248873143101344302505665167
No 20
>>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus dsm 4304} PDB: 2oaq_1 (1:261-446)
Probab=94.06 E-value=0.03 Score=36.04 Aligned_cols=40 Identities=25% Similarity=0.487 Sum_probs=26.6
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHC
Q ss_conf 3553047740679999999999982995784788852310011102
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVY 502 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y 502 (806)
.||+|.||||||-.+|+++- ...|++-.+++-|| .|+..-
T Consensus 3 ili~G~tGSGKTTll~aL~~----~i~~~~~~~~ied~--~E~~~~ 42 (186)
T 2oap_1 3 AIVVGETASGKTTTLNAIXX----FIPPDAKVVSIEDT--REIKLY 42 (186)
T ss_dssp EEEEESTTSSHHHHHHHHGG----GSCTTCCEEEEESS--CCCCCC
T ss_pred EEEEECCCCCHHHHHHHHHH----HCCCCCCCCCCCCC--CCCCCC
T ss_conf 99993765554899999997----46765662212366--212355
No 21
>>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} (C:)
Probab=93.93 E-value=0.032 Score=35.79 Aligned_cols=29 Identities=38% Similarity=0.578 Sum_probs=23.7
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 02023553047740679999999999982
Q gi|254780799|r 453 RMPHLLIAGTTGSGKSVAINTMILSLLYR 481 (806)
Q Consensus 453 kMPHLLIAGtTGSGKSV~iN~iI~SlLyk 481 (806)
+-++++|.|.||+|||-.||+|+=+-+..
T Consensus 30 ~~~~I~ivG~~g~GKSTliN~L~g~~~~~ 58 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYS 58 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 85399998899893999999986887677
No 22
>>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} (A:93-277)
Probab=93.82 E-value=0.22 Score=29.48 Aligned_cols=76 Identities=12% Similarity=0.101 Sum_probs=46.7
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHH----HHCCCCHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 023553047740679999999999982995784788852310011----1027703431223343045668999999999
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLEL----SVYDGIPNLLTPVVTNPQKAVTVLKWLVCEM 530 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEl----s~Y~~iPHLl~pVvTd~~kA~~aL~w~V~EM 530 (806)
+..+|.|.||||||-.|+-+..-+..+ -..|.++-.||-++.- .-|....+--.-.+.+++.....++.++..+
T Consensus 7 ~vv~i~G~~GsGKTT~i~kl~~~~~~~--~~~v~ii~~d~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (185)
T 1ls1_A 7 NLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 84 (185)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHHHT--TCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHC--CCEEEEEECCCCCCCHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 499996788887122799999999866--986788842455530779999999872971571278767789999999998
Q ss_pred HH
Q ss_conf 99
Q gi|254780799|r 531 EE 532 (806)
Q Consensus 531 e~ 532 (806)
+.
T Consensus 85 ~~ 86 (185)
T 1ls1_A 85 RL 86 (185)
T ss_dssp HH
T ss_pred HH
T ss_conf 75
No 23
>>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein transport; HET: ADP; 2.80A {Aquifex aeolicus VF5} PDB: 2eww_A* 2gsz_A* (A:125-372)
Probab=93.80 E-value=0.057 Score=33.89 Aligned_cols=25 Identities=44% Similarity=0.599 Sum_probs=21.2
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 2355304774067999999999998
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLY 480 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLy 480 (806)
-.||+|.||||||-.+|+++..+.-
T Consensus 14 ~ili~GptGsGKTtll~al~~~~~~ 38 (248)
T 2ewv_A 14 LILVTGPTGSGKSTTIASMIDYINQ 38 (248)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHC
T ss_conf 2688668877730199999998760
No 24
>>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} (B:40-427)
Probab=93.12 E-value=0.058 Score=33.86 Aligned_cols=21 Identities=38% Similarity=0.624 Sum_probs=19.2
Q ss_pred EEEEEECCCCHHHHHHHHHHH
Q ss_conf 235530477406799999999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMIL 476 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~ 476 (806)
+++|.|.||+|||-.||+|.=
T Consensus 5 ~I~ivG~~g~GKStliN~L~g 25 (388)
T 2qag_B 5 NILCVGETGLGKSTLMDTLFN 25 (388)
T ss_dssp EEEEECSTTSSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999988999979999999858
No 25
>>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} (A:231-503)
Probab=93.08 E-value=0.031 Score=35.92 Aligned_cols=66 Identities=12% Similarity=0.219 Sum_probs=42.6
Q ss_pred CCEEEEEHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHCCCCEEEE
Q ss_conf 9868776344688887321-----00588999999866414237999965777535543554110251587
Q gi|254780799|r 589 MPYIVVVIDEMADLMMVAR-----KDIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRISF 654 (806)
Q Consensus 589 lp~ivviiDElaDlmm~~~-----~~ve~~i~rlaq~ara~GiHli~aTqrPsvdvitg~ikan~p~riaf 654 (806)
...-++|||-+..++-... ..+.....+|..+|+--|++.++..|.+...-...--..+-|..-.+
T Consensus 123 ~~~~~~vid~i~~~~~~~~~~~~~~~~~~~~~~L~~~a~~~~~~vi~~~q~~~~~~~~~~~~~~~~~~~~~ 193 (273)
T 1q57_A 123 LGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDL 193 (273)
T ss_dssp TCCSEEEEECTTCCCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCCCSSSSCSTTCCCCCSSSC
T ss_pred CCCEEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCHHHH
T ss_conf 89479998102210467755227789999999999999985973999952574203456445899774442
No 26
>>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} (A:1-107,A:194-286)
Probab=92.88 E-value=0.13 Score=31.29 Aligned_cols=112 Identities=19% Similarity=0.222 Sum_probs=61.2
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 02355304774067999999999998299578478885231001110277034312233430456689999999999999
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEMEERY 534 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~iPHLl~pVvTd~~kA~~aL~w~V~EMe~RY 534 (806)
.|.+|-|.|||||+.++-..|.-+|.+......+.+.+=|. + -+++++.+|.
T Consensus 25 ~~~~V~~~tGsGKT~~~~~~i~~~l~~~~~~~~~il~i~~t---------------------~-------~~~~~l~~~~ 76 (200)
T 1pjr_A 25 GPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFT---------------------N-------KAAREMRERV 76 (200)
T ss_dssp SCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESS---------------------H-------HHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECH---------------------H-------HHHHHHHHHH
T ss_conf 89899983842799999999999998099894229999351---------------------9-------9999999999
Q ss_pred HHH-----HHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCEEEEEHHHHHHHH
Q ss_conf 999-----87089968999999998874478667754467765454322233223234--6986877634468888
Q gi|254780799|r 535 QKM-----SKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQ--HMPYIVVVIDEMADLM 603 (806)
Q Consensus 535 ~l~-----a~~~vRni~~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~lp~ivviiDElaDlm 603 (806)
+-. ....|+.+.++-.+..........+.. ......+......+ .=+|=.|+|||.=|+-
T Consensus 77 ~~~~~~~~~~~~v~t~~~~~~~~~~~~~~~~d~~~---------~~~~~~~~~~~~~~~~~~~~~~i~vDEaQd~~ 143 (200)
T 1pjr_A 77 QSLLGGAAEDVWISTFHSMCVRILRRDIDRIDLIM---------TTIQLFDRVPDVLHYYQYKFQYIHIDEYQDTN 143 (200)
T ss_dssp HHHHGGGGTTSEEEEHHHHHHHHHHHHGGGGHHHH---------HHHHHHHHCHHHHHHHHHHCSEEEESSGGGCC
T ss_pred HHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHH---------HHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 98604435785997499999999999799858999---------99988504999999998642301311124213
No 27
>>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, cell cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* (A:)
Probab=92.83 E-value=0.078 Score=32.87 Aligned_cols=78 Identities=21% Similarity=0.256 Sum_probs=45.6
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHH------HHHCCHHHEEEEEECCCHHHHHHC-CCCHHH--HCCCCCCHHHHHHHHHH
Q ss_conf 023553047740679999999999------982995784788852310011102-770343--12233430456689999
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTMILSL------LYRMTPAQCRLIMIDPKMLELSVY-DGIPNL--LTPVVTNPQKAVTVLKW 525 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~iI~Sl------Lyk~~P~evkliliDPK~vEls~Y-~~iPHL--l~pVvTd~~kA~~aL~w 525 (806)
|++.|.|.||+|||-.+|++.=+= +--.|-+..+.+...+.-++.... ++++=. -||-+.+........++
T Consensus 19 ~~I~ivG~~N~GKSTLiN~L~g~~~~~vs~~pgtTr~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~ 98 (301)
T 2qnr_A 19 FTLXVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKT 98 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CTT
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEEECCCCCCCCCCHHHHHH
T ss_conf 59999879969299999998687777678989876565651401137999635883333689868974455341677889
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780799|r 526 LVCEMEE 532 (806)
Q Consensus 526 ~V~EMe~ 532 (806)
.-..|++
T Consensus 99 ~~~~l~~ 105 (301)
T 2qnr_A 99 IISYIDE 105 (301)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999999
No 28
>>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} (A:)
Probab=92.48 E-value=0.12 Score=31.35 Aligned_cols=51 Identities=25% Similarity=0.309 Sum_probs=33.7
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCCHHHHC
Q ss_conf 2355304774067999999999998299578478885231001110277034312
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLT 510 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~iPHLl~ 510 (806)
..||+|.|||||+-.+|+++..+. .+.+.+++.| =.+.|+...........
T Consensus 27 ~ili~GptGsGKTTll~al~~~~~---~~~~~~v~~i-Ed~~E~~~~~~~~~~~~ 77 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASXIDYIN---QTKSYHIITI-EDPIEYVFKHKKSIVNQ 77 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHHHH---HHCCCEEEEE-ESSCCSCCCCSSSEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH---HHCCCCEEEC-CCCCCCCCCCCCCCCCC
T ss_conf 799989999979999999999745---6436442203-43333233455533011
No 29
>>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} (A:1-254)
Probab=92.03 E-value=0.37 Score=27.82 Aligned_cols=47 Identities=19% Similarity=0.219 Sum_probs=36.6
Q ss_pred CCEEEEEHHHHHHHHHHCC--CHHHHHHHHHHHHHHHCCEEEEEEECCC
Q ss_conf 9868776344688887321--0058899999986641423799996577
Q gi|254780799|r 589 MPYIVVVIDEMADLMMVAR--KDIESAVQRLAQMARASGIHVIMATQRP 635 (806)
Q Consensus 589 lp~ivviiDElaDlmm~~~--~~ve~~i~rlaq~ara~GiHli~aTqrP 635 (806)
..+=+||||-++.|+-... .+....+.+|-+.|..-|++.++-+|--
T Consensus 137 ~~~~~vvIDsl~~l~~~~~~~~~~~~~~~~L~~~a~~~~~~~i~~~~~~ 185 (254)
T 1tf7_A 137 YRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERI 185 (254)
T ss_dssp HTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECS
T ss_pred HCCCEEEECCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEE
T ss_conf 0998899454688876436899999999999999985098099999773
No 30
>>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome assembly, GTP-binding; HET: GNP; 1.90A {Aquifex aeolicus} (A:1-190,A:295-308)
Probab=91.78 E-value=0.12 Score=31.36 Aligned_cols=26 Identities=23% Similarity=0.402 Sum_probs=22.9
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 00202355304774067999999999
Q gi|254780799|r 452 ARMPHLLIAGTTGSGKSVAINTMILS 477 (806)
Q Consensus 452 akMPHLLIAGtTGSGKSV~iN~iI~S 477 (806)
.|.|+..|.|.||+|||--||++.-+
T Consensus 8 ~k~~~V~iiG~~~~GKSSLin~l~~~ 33 (204)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGT 33 (204)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 34788999999998699999999489
No 31
>>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} (A:150-349)
Probab=91.47 E-value=0.28 Score=28.67 Aligned_cols=55 Identities=18% Similarity=0.182 Sum_probs=36.3
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 35530477406799999999999829957847888523100111027703431223343045668999999999999
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEMEER 533 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~iPHLl~pVvTd~~kA~~aL~w~V~EMe~R 533 (806)
+++.|.||||||-.+--++..+-.+.. .+.++-.||.++ -|...+++.-+||..+
T Consensus 11 iii~G~tG~GKTT~ipq~~~~~~~~g~--~~~i~~~dp~R~--------------------aa~~~~~~~a~~~~~~ 65 (200)
T 2og2_A 11 IMIVGVNGGGKTTSLGKLAHRLKNEGT--KVLMAAGDTFRA--------------------AASDQLEIWAERTGCE 65 (200)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTTC--CEEEECCCCSCH--------------------HHHHHHHHHHHHHTCE
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHC--CCEEEEEECCCC--------------------CHHHHHHHHHHHCCCC
T ss_conf 997055313667789999999986104--650577403444--------------------1678999975412653
No 32
>>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} (A:93-292)
Probab=91.47 E-value=0.28 Score=28.67 Aligned_cols=39 Identities=21% Similarity=0.292 Sum_probs=28.1
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHH
Q ss_conf 35530477406799999999999829957847888523100
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKML 497 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~v 497 (806)
+++.|.||||||-.+--++..+-.+.. .+.++-.||.++
T Consensus 11 iii~G~tG~GKTT~ipq~~~~~~~~g~--~~~i~~~dp~R~ 49 (200)
T 3b9q_A 11 IMIVGVNGGGKTTSLGKLAHRLKNEGT--KVLMAAGDTFRA 49 (200)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTTC--CEEEECCCCSCH
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHCCC--CCEEEEECCCCC
T ss_conf 996166555411579999999985588--741575124444
No 33
>>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolase/protein binding complex; 2.40A {Helicobacter pylori 26695} (A:139-330)
Probab=91.28 E-value=0.099 Score=32.10 Aligned_cols=41 Identities=29% Similarity=0.588 Sum_probs=26.8
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHH
Q ss_conf 02355304774067999999999998299578478885231001110
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSV 501 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~ 501 (806)
..+||+|.|||||+-.+|+++ +.-|++.+.+-|..- .|+..
T Consensus 34 ~~ili~G~tGsGKTTll~al~-----~~~~~~~~~~~ie~~-~e~~~ 74 (192)
T 2pt7_A 34 KNVIVCGGTGSGKTTYIKSIM-----EFIPKEERIISIEDT-EEIVF 74 (192)
T ss_dssp CCEEEEESTTSCHHHHHHHGG-----GGSCTTSCEEEEESS-CCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHH-----HHCCCCCCEEECCCC-HHHCC
T ss_conf 867999503798278889987-----641255633312430-54402
No 34
>>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} (B:1-293)
Probab=91.27 E-value=0.16 Score=30.46 Aligned_cols=27 Identities=22% Similarity=0.545 Sum_probs=22.9
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 020235530477406799999999999
Q gi|254780799|r 453 RMPHLLIAGTTGSGKSVAINTMILSLL 479 (806)
Q Consensus 453 kMPHLLIAGtTGSGKSV~iN~iI~SlL 479 (806)
.-|.+.|.|.++||||-.||+++=.=+
T Consensus 23 ~~p~I~vvG~~ssGKStliNaLlg~~i 49 (293)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDF 49 (293)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCC
T ss_conf 888599995898979999999968896
No 35
>>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} (A:1-312)
Probab=91.12 E-value=0.16 Score=30.47 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=21.0
Q ss_pred CCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 02023553047740679999999
Q gi|254780799|r 453 RMPHLLIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 453 kMPHLLIAGtTGSGKSV~iN~iI 475 (806)
+++.+.|.|.||||||--||+|.
T Consensus 37 ~~~~I~ivG~~~~GKSsLiN~L~ 59 (312)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLA 59 (312)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHT
T ss_pred CEEEEEEECCCCCCHHHHHHHHC
T ss_conf 97999877899997999999973
No 36
>>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, plasmid, helicase, hydrolase, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} (A:274-472)
Probab=90.81 E-value=0.33 Score=28.21 Aligned_cols=50 Identities=16% Similarity=0.055 Sum_probs=33.7
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCC-HHHHHHCCCCH
Q ss_conf 02355304774067999999999998299578478885231-00111027703
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPK-MLELSVYDGIP 506 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK-~vEls~Y~~iP 506 (806)
-+.||+..|||||+...-.+|.-++. .....|.+.+=|+ -+--..++.+.
T Consensus 28 ~~~li~~~tGsGKT~~~~~~i~~~~~--~~~~~~vlvi~P~~~L~~q~~~~~~ 78 (199)
T 2w00_A 28 SGGYIWHTTGSGKTLTSFKAARLATE--LDFIDKVFFVVDRKDLDYQTXKEYQ 78 (199)
T ss_dssp GSEEEEECTTSSHHHHHHHHHHHHTT--CTTCCEEEEEECGGGCCHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH--CCCCCCEEEEECHHHHHHHHHHHHH
T ss_conf 72699974898465999999999983--7468828999560899999999999
No 37
>>2w0m_A SSO2452; RECA, SSPF, unknown function; 2.0A {Sulfolobus solfataricus P2} (A:)
Probab=90.47 E-value=1.3 Score=23.78 Aligned_cols=69 Identities=12% Similarity=0.034 Sum_probs=53.5
Q ss_pred CCCEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHH--HHHCCCCEEEEEE
Q ss_conf 69868776344688887321005889999998664142379999657775355435--5411025158764
Q gi|254780799|r 588 HMPYIVVVIDEMADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPSVDVITGT--IKANFPTRISFQV 656 (806)
Q Consensus 588 ~lp~ivviiDElaDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPsvdvitg~--ikan~p~riaf~v 656 (806)
.-.+.++++|....+.+.....+.....+|+..++-.++..++.+|.+...-.++- ++...=.+|-++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~l~~ 191 (235)
T 2w0m_A 121 GYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRR 191 (235)
T ss_dssp CSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEE
T ss_pred HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEE
T ss_conf 12343201451555421225777899999998777509679999822688764467653003536999997
No 38
>>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A* (A:165-385)
Probab=90.12 E-value=0.28 Score=28.75 Aligned_cols=31 Identities=6% Similarity=0.048 Sum_probs=26.3
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHCCHH
Q ss_conf 0235530477406799999999999829957
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTMILSLLYRMTPA 485 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~ 485 (806)
...+|++.||||||.+.-..+..+|.+....
T Consensus 15 ~~~ii~~~tGsGKT~~~~~~~~~~l~~~~~~ 45 (221)
T 2o0j_A 15 RMTVCNLSRQLGKTTVVAIFLAHFVCFNKDK 45 (221)
T ss_dssp SEEEEEECSSSCHHHHHHHHHHHHHHSSSSC
T ss_pred CEEEEEEECCCCEEEEHHHHHHHHHHHCCCC
T ss_conf 3799996054441222388999998706663
No 39
>>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} (A:93-282)
Probab=89.83 E-value=0.41 Score=27.46 Aligned_cols=40 Identities=23% Similarity=0.354 Sum_probs=33.3
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHH
Q ss_conf 235530477406799999999999829957847888523100
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKML 497 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~v 497 (806)
-.+|-|.||||||--++.++. .|+.....+..+..||.+.
T Consensus 8 vv~ivG~~GsGKST~l~~l~~--~~~~~~~~~~~~~~d~~r~ 47 (190)
T 2ffh_A 8 LWFLVGLQGSGKTTTAAKLAL--YYKGKGRRPLLVAADTQRP 47 (190)
T ss_dssp EEEEECCTTSSHHHHHHHHHH--HHHTTTCCEEEEECCSSCH
T ss_pred EEEEECCCCCCCHHHHHHHHH--HHHHCCCCEEEEECCCCCC
T ss_conf 899856766762457999999--9984498025874354456
No 40
>>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure 2 function project, S2F, unknown function; 2.00A {Escherichia coli} (A:1-204)
Probab=89.56 E-value=0.25 Score=29.16 Aligned_cols=183 Identities=9% Similarity=0.072 Sum_probs=88.2
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHH----CCCCHHH--HCCCC--CCHHHHHHH
Q ss_conf 100202355304774067999999999998299578478885231001110----2770343--12233--430456689
Q gi|254780799|r 451 LARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSV----YDGIPNL--LTPVV--TNPQKAVTV 522 (806)
Q Consensus 451 LakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~----Y~~iPHL--l~pVv--Td~~kA~~a 522 (806)
+.|+|=.+|+|-+||||+-.|| .|+.+.+...+-+|..|.=.....- |...+.. ..... +.......+
T Consensus 1 m~k~~v~~v~GflGsGKTTll~----~l~~~~~~~k~~vi~~d~~~~~~d~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~ 76 (204)
T 1nij_A 1 MNPIAVTLLTGFLGAGKTTLLR----HILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDA 76 (204)
T ss_dssp -CCEEEEEEEESSSSSCHHHHH----HHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHH
T ss_pred CCCCCEEEEEECCCCCHHHHHH----HHHHCCCCCCEEEEECCCCCCHHHHHHHHCCCCEEEEECCCCEEECCCHHHHHH
T ss_conf 9965789997187899999999----998377899689997788752003999837895299862883141152568999
Q ss_pred HHHHHHHHHHHH-----HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHH
Q ss_conf 999999999999-----999870899689999999988744786677544677654543222332232346986877634
Q gi|254780799|r 523 LKWLVCEMEERY-----QKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVID 597 (806)
Q Consensus 523 L~w~V~EMe~RY-----~l~a~~~vRni~~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ivviiD 597 (806)
|.-++..+..|+ -+.-..|.-+-..--....... ...+.-....++++||
T Consensus 77 l~~~~~~~~a~~~~~d~ilie~~G~~~~~~~~~~~l~~~-------------------------~~~~~~~~~~vi~vvd 131 (204)
T 1nij_A 77 LLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHE-------------------------VLCQRYLLDGVIALVD 131 (204)
T ss_dssp HHHHHHHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSH-------------------------HHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHH-------------------------HHCCEEEECCEEEECH
T ss_conf 999999986167777669995167668699999986666-------------------------4246388654778314
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCC---CCCCCCHHHHH-CCCCEEEEEECCCCCCHHHCCCCC
Q ss_conf 46888873210058899999986641423799996577---75355435541-102515876458664212338864
Q gi|254780799|r 598 EMADLMMVARKDIESAVQRLAQMARASGIHVIMATQRP---SVDVITGTIKA-NFPTRISFQVSSKIDSRTILGEQG 670 (806)
Q Consensus 598 ElaDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrP---svdvitg~ika-n~p~riaf~v~s~~dSrtild~~g 670 (806)
=...... .+... -+...-+ ..++|+-|--= ..+-+.-.||+ |=.++|-|....++|-..++|-..
T Consensus 132 a~~~~~~--~~~~~----~~~~q~~--~ad~viitK~D~~~~~~~~~~~i~~~n~~~~i~~~~~g~~~~~~l~~~~~ 200 (204)
T 1nij_A 132 AVHADEQ--MNQFT----IAQSQVG--YADRILLTKTDVAGEAEKLHERLARINARAPVYTVTHGDIDLGLLFNTNG 200 (204)
T ss_dssp TTTHHHH--HHHCH----HHHHHHH--TCSEEEEECTTTCSCTHHHHHHHHHHCSSSCEEECCSSCCCGGGGSCCCT
T ss_pred HHHHHHH--HHHHH----HHHHHHC--CCCEEEECCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHCCCC
T ss_conf 7778886--42325----5654303--47746630110136799999999975778868962357779999828755
No 41
>>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} (B:1-289)
Probab=89.54 E-value=0.29 Score=28.64 Aligned_cols=28 Identities=18% Similarity=0.394 Sum_probs=24.1
Q ss_pred ECCCCCEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 4100202355304774067999999999
Q gi|254780799|r 450 DLARMPHLLIAGTTGSGKSVAINTMILS 477 (806)
Q Consensus 450 DLakMPHLLIAGtTGSGKSV~iN~iI~S 477 (806)
+-.+.|++.|.|.+.+|||--||++.=.
T Consensus 22 ~~~~~~~IaivG~~naGKSTLiNaLlg~ 49 (289)
T 2aka_B 22 ADLDLPQIAVVGGQSAGKSSVLENFVGR 49 (289)
T ss_dssp TTCCCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 8888887999828989889999999688
No 42
>>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; HET: CIT; 1.60A {Thermotoga maritima} (A:)
Probab=89.34 E-value=1.1 Score=24.16 Aligned_cols=75 Identities=13% Similarity=0.139 Sum_probs=61.4
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHH----HHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 35530477406799999999999829957847888523100----11102770343122334304566899999999999
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKML----ELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEMEE 532 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~v----Els~Y~~iPHLl~pVvTd~~kA~~aL~w~V~EMe~ 532 (806)
.++.|-||+||+-.+--+-..+.-+. ..|-+|-+|+=+. .|..|-.|-..=.-++.+++....++++++..+..
T Consensus 107 i~~vGptGvGKTTTiaKlA~~~~~~g--~kv~lit~Dt~R~ga~eQL~~~a~~~~vp~~~~~~~~~~~~~~~~~i~~~~~ 184 (306)
T 1vma_A 107 IMVVGVNGTGKTTSCGKLAKMFVDEG--KSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHALA 184 (306)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTT--CCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHHHH
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHCC--CEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 87415556676416999999998579--8479983365331057788888751475421567786689888999999998
Q ss_pred H
Q ss_conf 9
Q gi|254780799|r 533 R 533 (806)
Q Consensus 533 R 533 (806)
+
T Consensus 185 ~ 185 (306)
T 1vma_A 185 R 185 (306)
T ss_dssp T
T ss_pred C
T ss_conf 6
No 43
>>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} (A:170-361)
Probab=89.03 E-value=0.53 Score=26.65 Aligned_cols=29 Identities=28% Similarity=0.281 Sum_probs=25.8
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 02355304774067999999999998299
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTMILSLLYRMT 483 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~iI~SlLyk~~ 483 (806)
+++|++..|||||+++.=.++..+.++..
T Consensus 30 ~~~il~~~tGsGKT~~~~~~~~~~~~~~~ 58 (192)
T 3h1t_A 30 KRSLITXATGTGKTVVAFQISWKLWSARW 58 (192)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCCEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 64427757898415899999999998633
No 44
>>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} (A:1-119,A:196-206,A:289-340)
Probab=88.72 E-value=1.1 Score=24.15 Aligned_cols=77 Identities=17% Similarity=0.111 Sum_probs=43.7
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHH-----------HHHCCCCHHHHCC--CCCCHHH
Q ss_conf 00202355304774067999999999998299578478885231001-----------1102770343122--3343045
Q gi|254780799|r 452 ARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLE-----------LSVYDGIPNLLTP--VVTNPQK 518 (806)
Q Consensus 452 akMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vE-----------ls~Y~~iPHLl~p--VvTd~~k 518 (806)
+|-+=+.|+|.||||||--.+.+.- .. ...+|.+|+-.+- ..--+++||.+.- -..+.-.
T Consensus 5 ~k~~IIVI~GPTGSGKStLa~~Lae-----~~--~~eiI~~DS~qiY~~l~ItTrkPr~~E~~gv~yhfId~~e~~e~~s 77 (182)
T 3d3q_A 5 TKPFLIVIVGPTASGKTELSIEVAK-----KF--NGEIISGDSXQVYQGXDIGTAKVTTEEXEGIPHYXIDILPPDASFS 77 (182)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH-----HT--TEEEEECCSSTTBTTCCTTTTCCCTTTTTTCCEESSSCBCTTSCCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH-----HC--CCEEEEECHHHHCCCCCEEECCCCHHHHHCCCEEEECEECCCCCCC
T ss_conf 8895699989772169999999999-----87--9979950137644999766689999999269863334078532433
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 66899999999999999
Q gi|254780799|r 519 AVTVLKWLVCEMEERYQ 535 (806)
Q Consensus 519 A~~aL~w~V~EMe~RY~ 535 (806)
+..-++||..--+.-|.
T Consensus 78 ~g~fle~a~~~~~~i~~ 94 (182)
T 3d3q_A 78 AYEFKKRAEKYIKDITR 94 (182)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 78778899999999996
No 45
>>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} (A:65-322)
Probab=88.36 E-value=1.2 Score=23.93 Aligned_cols=46 Identities=17% Similarity=0.226 Sum_probs=29.8
Q ss_pred CCCEEEEEHHHHHHHHH----------HCCCHHHHHHHHHHHHHHHCCEEEEEEEC
Q ss_conf 69868776344688887----------32100588999999866414237999965
Q gi|254780799|r 588 HMPYIVVVIDEMADLMM----------VARKDIESAVQRLAQMARASGIHVIMATQ 633 (806)
Q Consensus 588 ~lp~ivviiDElaDlmm----------~~~~~ve~~i~rlaq~ara~GiHli~aTq 633 (806)
....-.+|||-+.-+-. .-..++......|.++|+--+++.++-.|
T Consensus 138 ~~~~~~~vid~i~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~la~~~~~~v~~~~~ 193 (258)
T 2i1q_A 138 GNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQ 193 (258)
T ss_dssp TCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCCEEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 25642787410665522331245420146889988888887665404623898434
No 46
>>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* (A:146-383)
Probab=88.25 E-value=0.65 Score=25.98 Aligned_cols=157 Identities=8% Similarity=-0.003 Sum_probs=73.0
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 02023553047740679999999999982995784788852310011102770343122334304566899999999999
Q gi|254780799|r 453 RMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEMEE 532 (806)
Q Consensus 453 kMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~iPHLl~pVvTd~~kA~~aL~w~V~EMe~ 532 (806)
+=++.+|.+.||||||.+.=..++.++.+.... |.+.+-|.+ -+++++-+
T Consensus 32 ~~~~~~i~~~tG~GKT~~~~~~~~~~~~~~~~~--~vliv~p~~----------------------------~l~~q~~~ 81 (238)
T 3cpe_A 32 SKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDK--AVGILAHKG----------------------------SMSAEVLD 81 (238)
T ss_dssp HCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSC--EEEEEESSH----------------------------HHHHHHHH
T ss_pred HCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCC--EEEEEECCH----------------------------HHHHHHHH
T ss_conf 427589993698878999999999999849997--699990989----------------------------99999999
Q ss_pred HHHHH-HHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCCHHH
Q ss_conf 99999-87089968999999998874478667754467765454322233223234698687763446888873210058
Q gi|254780799|r 533 RYQKM-SKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVARKDIE 611 (806)
Q Consensus 533 RY~l~-a~~~vRni~~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ivviiDElaDlmm~~~~~ve 611 (806)
+++.+ ...+++-..++... ... ......+. .-...-.....+..-.+=.|||||..-+= ..+--
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~----~~~~~~~~~~~~~~~~~~~vIiDE~h~~~---~~~~~ 146 (238)
T 3cpe_A 82 RTKQAIELLPDFLQPGIVEW------NKG--SIELDNGS----SIGAYASSPDAVRGNSFAMIYIEDCAFIP---NFHDS 146 (238)
T ss_dssp HHHHHHTTSCTTTSCCEEEE------CSS--EEEETTSC----EEEEEECCHHHHHHSCCSEEEEETGGGCT---THHHH
T ss_pred HHHHHHHHCCHHCCCCCCCC------CCC--EEEECCCE----EEEECCCCCCCCCCCCCCEEEEEEHHCCC---HHHHH
T ss_conf 99999996831114662236------653--38715870----56511688877667655405864122064---05655
Q ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCC---CCCHHHHHCCCCEEEE
Q ss_conf 899999986641423799996577753---5543554110251587
Q gi|254780799|r 612 SAVQRLAQMARASGIHVIMATQRPSVD---VITGTIKANFPTRISF 654 (806)
Q Consensus 612 ~~i~rlaq~ara~GiHli~aTqrPsvd---vitg~ikan~p~riaf 654 (806)
....+..+..+..+.=++.||-.+.-+ ..++..+--...+-.+
T Consensus 147 ~~~~~~~~~~~~~~~~~l~sTp~~~~~~~~~~~~~~~~~~~~~~~~ 192 (238)
T 3cpe_A 147 WLAIQPVISSGRRSKIIITTTPNGLNHFYDIWTAAVEGKSGFEPYT 192 (238)
T ss_dssp HHHHHHHHSSSSCCEEEEEECCCTTSHHHHHHHHHHTTCSSCEEEE
T ss_pred HHHCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCEE
T ss_conf 5310344436887269997899776520688988742876567422
No 47
>>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-binding, nucleotide-binding; 2.30A {Sulfolobus solfataricus} (A:1-204)
Probab=88.23 E-value=0.36 Score=27.92 Aligned_cols=45 Identities=24% Similarity=0.296 Sum_probs=33.3
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCC
Q ss_conf 100202355304774067999999999998299578478885231
Q gi|254780799|r 451 LARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPK 495 (806)
Q Consensus 451 LakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK 495 (806)
+.+-.++++.+-|||||+.|.---|+..+.+....-....++-+-
T Consensus 43 l~~~~~~ii~apTGsGKT~~~~l~il~~~~~~~~~~~~~~~~~~~ 87 (204)
T 2va8_A 43 LLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRAL 87 (204)
T ss_dssp TTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHH
T ss_pred HHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHH
T ss_conf 967996899829984499999999999999679959998188999
No 48
>>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} (A:)
Probab=88.12 E-value=0.39 Score=27.63 Aligned_cols=41 Identities=29% Similarity=0.438 Sum_probs=28.5
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHHC---------------CHHHEEEEEECC
Q ss_conf 20235530477406799999999999829---------------957847888523
Q gi|254780799|r 454 MPHLLIAGTTGSGKSVAINTMILSLLYRM---------------TPAQCRLIMIDP 494 (806)
Q Consensus 454 MPHLLIAGtTGSGKSV~iN~iI~SlLyk~---------------~P~evkliliDP 494 (806)
-+.++|.|-||+|||--||++.-+-.... .++..++.++|-
T Consensus 39 ~~kv~i~G~~g~GKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt 94 (270)
T 1h65_A 39 SLTILVXGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVXVSRSRAGFTLNIIDT 94 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEEC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEECCCCCCCCCCEEEEEEEECCCEEEEEEC
T ss_conf 76799989999989999999848763013588997756799999989916999847
No 49
>>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A (A:69-307)
Probab=88.03 E-value=0.38 Score=27.73 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=19.4
Q ss_pred EEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 23553047740679999999999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSL 478 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~Sl 478 (806)
.++|.|.+|+|||-.+|++.=.-
T Consensus 3 ~I~vvG~~~~GKSTliN~L~g~~ 25 (239)
T 2j69_A 3 RLLVLGDMKRGKSTFLNALIGEN 25 (239)
T ss_dssp EEEEECCTTSCHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 79998799994999999997878
No 50
>>1es6_A Matrix protein VP40; beta sandwich, anti-parallel strands, beta sheet, helix, viral protein; 2.00A {Ebola virus SP} (A:197-266)
Probab=87.46 E-value=0.19 Score=30.07 Aligned_cols=30 Identities=33% Similarity=0.634 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCEEEEEECCC
Q ss_conf 39999978899998863001210003-8861255530245
Q gi|254780799|r 373 KSSRIIGLSDDIARSMSAISARVAVI-PRRNAIGIELPND 411 (806)
Q Consensus 373 KvSKI~nLadDIA~aLsa~svRIapI-PGK~~VGIEiPN~ 411 (806)
|+..|.|+-.|+ .|+|| |-|+.+|||||..
T Consensus 10 kiq~imn~~qd~---------kivpidptkni~gievpel 40 (70)
T 1es6_A 10 KIQAIMTSLQDF---------KIVPIDPTKNIMGIEVPET 40 (70)
T ss_dssp HHHHHHHHGGGC---------EEEEEEGGGTEEEEECCHH
T ss_pred HHHHHHHHCCCC---------EEEECCCCCCEEEECCHHH
T ss_conf 999999760245---------0661277555101011899
No 51
>>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} (A:88-289)
Probab=87.42 E-value=0.73 Score=25.63 Aligned_cols=51 Identities=16% Similarity=0.090 Sum_probs=31.9
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCC
Q ss_conf 10020235530477406799999999999829957847888523100111027
Q gi|254780799|r 451 LARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYD 503 (806)
Q Consensus 451 LakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~ 503 (806)
+.+-.|+++.+.|||||+.+.=..+...+.+..+ ..++++-++.+--..|+
T Consensus 38 ~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~--~~~ii~p~~~l~~q~~~ 88 (202)
T 2oca_A 38 GLVNRRRILNLPTSAGRSLIQALLARYYLENYEG--KILIIVPTTALTTQMAD 88 (202)
T ss_dssp HHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCSS--EEEEEESSHHHHHHHHH
T ss_pred HHHCCCCEEECCCCCHHHHHHHHHHHHHHHCCCC--EEEEECCCHHHHHHHHH
T ss_conf 7751763576255502568999999987624786--59997275779999999
No 52
>>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} (A:255-525)
Probab=87.22 E-value=1.5 Score=23.22 Aligned_cols=48 Identities=13% Similarity=0.153 Sum_probs=35.8
Q ss_pred CCCEEEEEHHHHHHHHHH-CCCHHHHHHHHHHHHHHHCCEEEEEEECCC
Q ss_conf 698687763446888873-210058899999986641423799996577
Q gi|254780799|r 588 HMPYIVVVIDEMADLMMV-ARKDIESAVQRLAQMARASGIHVIMATQRP 635 (806)
Q Consensus 588 ~lp~ivviiDElaDlmm~-~~~~ve~~i~rlaq~ara~GiHli~aTqrP 635 (806)
....-++|||-+..|+-. ..+.+...+..|...|+--+++.++-.|--
T Consensus 115 ~~~~~~~viDs~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~ 163 (271)
T 1tf7_A 115 DFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSD 163 (271)
T ss_dssp TTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred HCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 5199899997883002479999999999999999997799799998235
No 53
>>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} (B:1-166)
Probab=86.92 E-value=0.69 Score=25.80 Aligned_cols=33 Identities=33% Similarity=0.632 Sum_probs=27.9
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCH
Q ss_conf 002023553047740679999999999982995
Q gi|254780799|r 452 ARMPHLLIAGTTGSGKSVAINTMILSLLYRMTP 484 (806)
Q Consensus 452 akMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P 484 (806)
.++||+|..|..|+||.-+..++-..+.+....
T Consensus 40 ~~~~~~ll~Gp~G~GKt~~a~~~a~~l~~~~~~ 72 (166)
T 1sxj_B 40 GNMPHMIISGMPGIGKTTSVHCLAHELLGRSYA 72 (166)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 999869988949998999999999986699765
No 54
>>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} (A:34-361)
Probab=86.76 E-value=0.4 Score=27.60 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.1
Q ss_pred CCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 02023553047740679999999
Q gi|254780799|r 453 RMPHLLIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 453 kMPHLLIAGtTGSGKSV~iN~iI 475 (806)
|=.+++|.|-||+|||-.+|++.
T Consensus 3 ~~l~I~ivG~~n~GKSSliN~L~ 25 (328)
T 2qag_A 3 FEFTLMVVGESGLGKSTLINSLF 25 (328)
T ss_dssp CEECEEECCCTTSCHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
T ss_conf 85089998899695999999996
No 55
>>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* (A:)
Probab=86.57 E-value=0.57 Score=26.43 Aligned_cols=40 Identities=25% Similarity=0.277 Sum_probs=28.8
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECC
Q ss_conf 0020235530477406799999999999829957847888523
Q gi|254780799|r 452 ARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDP 494 (806)
Q Consensus 452 akMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDP 494 (806)
.++|.+.|.|.+|+|||-.+|.+.-..-... .+-.+=-||
T Consensus 36 ~~~~~i~iiG~~n~GKSTLin~L~~~~~~~~---~~~~~~~~~ 75 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKY---KIACIAGDV 75 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTC---CEEEEEEET
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHCCC---EEEEEECCC
T ss_conf 5984999988999889999999999851575---178994366
No 56
>>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding protein; HET: DNA; 2.40A {Archaeoglobus fulgidus dsm 4304} (A:88-237)
Probab=86.56 E-value=0.68 Score=25.85 Aligned_cols=40 Identities=20% Similarity=0.059 Sum_probs=24.6
Q ss_pred ECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCC
Q ss_conf 4100202355304774067999999999998299578478885231
Q gi|254780799|r 450 DLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPK 495 (806)
Q Consensus 450 DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK 495 (806)
.+.+..+.++++.||||||++. ++.-.....--++++-+|
T Consensus 17 ~~~~~~~~ll~a~tG~GKT~~~------~~~~~~~~~~~liv~P~~ 56 (150)
T 2fz4_A 17 RWLVDKRGCIVLPTGSGKTHVA------MAAINELSTPTLIVVPTL 56 (150)
T ss_dssp HHTTTSEEEEEESSSTTHHHHH------HHHHHHSCSCEEEEESSH
T ss_pred HHHHCCCEEEEECCCCCCEEHH------HHHHHHHCCEEEEEEECC
T ss_conf 9996799099927999966064------424787498499999223
No 57
>>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* (A:)
Probab=86.23 E-value=0.54 Score=26.59 Aligned_cols=24 Identities=33% Similarity=0.517 Sum_probs=20.7
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 023553047740679999999999
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTMILSL 478 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~iI~Sl 478 (806)
+.++|-|.||+|||--+|++.-.=
T Consensus 37 ~~v~ivG~~~~GKSSLin~L~~~~ 60 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 389998999987999999995888
No 58
>>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} (A:)
Probab=86.07 E-value=0.54 Score=26.57 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=18.2
Q ss_pred CCEEE-EEECCCCHHHHHHHHHH
Q ss_conf 20235-53047740679999999
Q gi|254780799|r 454 MPHLL-IAGTTGSGKSVAINTMI 475 (806)
Q Consensus 454 MPHLL-IAGtTGSGKSV~iN~iI 475 (806)
||-+. |.|.+|||||---+.+-
T Consensus 1 M~~iI~I~G~~GsGKTTla~~L~ 23 (206)
T 1jjv_A 1 MTYIVGLTGGIGSGKTTIANLFT 23 (206)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
T ss_conf 98899988988777999999999
No 59
>>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* (A:1-111,A:185-343)
Probab=85.90 E-value=2.4 Score=21.73 Aligned_cols=66 Identities=24% Similarity=0.256 Sum_probs=38.0
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHH-----------HHHHCCCCHHHHCCCC--CCHHHHHH
Q ss_conf 0235530477406799999999999829957847888523100-----------1110277034312233--43045668
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKML-----------ELSVYDGIPNLLTPVV--TNPQKAVT 521 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~v-----------Els~Y~~iPHLl~pVv--Td~~kA~~ 521 (806)
+-+.|+|.||||||---+.+--.+ ...+|..|.-.+ ...-.+++||.+.-+. ++.-.+..
T Consensus 3 kiI~I~GptGsGKStla~~LA~~l-------~~~~i~~Ds~q~y~~~~i~t~k~~~~e~~~~~~~~~~~~~~~~~~~~~~ 75 (270)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF-------NGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSEEYYSHR 75 (270)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH-------TEEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSCBCTTSCCCHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHC-------CCEEEECCHHHHCCCCCEEECCCCHHHHHCCCEEEECCCCCCCCCCHHH
T ss_conf 679998977045999999999987-------9989910388740999558789999999189961461337998728999
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780799|r 522 VLKWLV 527 (806)
Q Consensus 522 aL~w~V 527 (806)
-++++.
T Consensus 76 f~~~a~ 81 (270)
T 3eph_A 76 FETECM 81 (270)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999999
No 60
>>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombination, hydrolase; 2.90A {Pyrococcus furiosus dsm 3638} (A:1-196)
Probab=85.81 E-value=0.93 Score=24.82 Aligned_cols=162 Identities=19% Similarity=0.168 Sum_probs=79.7
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECC-CHHHHHHCCCCHHHHCC------CCCCHHHHHHHHHHHH
Q ss_conf 0235530477406799999999999829957847888523-10011102770343122------3343045668999999
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDP-KMLELSVYDGIPNLLTP------VVTNPQKAVTVLKWLV 527 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDP-K~vEls~Y~~iPHLl~p------VvTd~~kA~~aL~w~V 527 (806)
-+.||...|||||+.+.--.++..+++... |-+.+=| +-+.-..|+.+-.+..+ ..+.......
T Consensus 24 ~~~li~~~tG~GKT~~~~~~~l~~~~~~~~---~vl~i~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 94 (196)
T 1wp9_A 24 TNCLIVLPTGLGKTLIAMMIAEYRLTKYGG---KVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEE------ 94 (196)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHHHSCS---CEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHH------
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHCCC---CEEEEECHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHH------
T ss_conf 997999899773999999999999985599---19999280999999999999974678978999978989899------
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCC
Q ss_conf 99999999998708996899999999887447866775446776545432223322323469868776344688887321
Q gi|254780799|r 528 CEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVAR 607 (806)
Q Consensus 528 ~EMe~RY~l~a~~~vRni~~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ivviiDElaDlmm~~~ 607 (806)
..+........|-....+...... + ....--+=+|||||.-.+. +
T Consensus 95 ---~~~~~~~~~i~v~t~~~~~~~~~~----~-------------------------~~~~~~~~~iIiDEaH~~~---~ 139 (196)
T 1wp9_A 95 ---RSKAWARAKVIVATPQTIENDLLA----G-------------------------RISLEDVSLIVFDEAHRAV---G 139 (196)
T ss_dssp ---HHHHHHHCSEEEECHHHHHHHHHT----T-------------------------SCCTTSCSEEEEETGGGCS---T
T ss_pred ---HHHHHHCCCCEEEEEEEHHHHHHC----C-------------------------CHHHCCCCCEEEEEHHHHC---C
T ss_conf ---999973267148751013545531----2-------------------------0000357752888633303---4
Q ss_pred CHHHHHHHHHHHHHHHCCEEEEEEECCCC--CCCCCHHHHHCCCCEEEEEECCCCC
Q ss_conf 00588999999866414237999965777--5355435541102515876458664
Q gi|254780799|r 608 KDIESAVQRLAQMARASGIHVIMATQRPS--VDVITGTIKANFPTRISFQVSSKID 661 (806)
Q Consensus 608 ~~ve~~i~rlaq~ara~GiHli~aTqrPs--vdvitg~ikan~p~riaf~v~s~~d 661 (806)
..-...+.++.... ....+++.-|=.|. .+.+.-++..--.+.|-+..-...|
T Consensus 140 ~~~~~~~~~~~~~~-~~~~~~l~lSATp~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 194 (196)
T 1wp9_A 140 NYAYVFIAREYKRQ-AKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPD 194 (196)
T ss_dssp TCHHHHHHHHHHHH-CSSCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTT
T ss_pred CHHHHHHHHHHHHC-CCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCHH
T ss_conf 21688999999865-76664898854775334789999974487632001355356
No 61
>>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} (A:582-783)
Probab=85.61 E-value=0.81 Score=25.28 Aligned_cols=36 Identities=17% Similarity=0.252 Sum_probs=26.4
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECC
Q ss_conf 0235530477406799999999999829957847888523
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDP 494 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDP 494 (806)
...+++..|||||+.+.=..|.+.+.+.. |-+.+=|
T Consensus 44 ~~~il~apTGsGKT~~~~~~i~~~~~~~~----~vl~i~P 79 (202)
T 2eyq_A 44 MDRLVCGDVGFGKTEVAMRAAFLAVDNHK----QVAVLVP 79 (202)
T ss_dssp CEEEEECCCCTTTHHHHHHHHHHHHTTTC----EEEEECS
T ss_pred HHEEEECCCCCCCHHHHHHHHHHHHHCCC----EEEEEEC
T ss_conf 10688715678714999999998740597----3899816
No 62
>>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} (A:)
Probab=85.58 E-value=1.7 Score=22.94 Aligned_cols=65 Identities=12% Similarity=0.083 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHH-CCCCEEEEEECCCCCCHHHCCCCCH
Q ss_conf 1005889999998664142379999657775355435541-1025158764586642123388645
Q gi|254780799|r 607 RKDIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKA-NFPTRISFQVSSKIDSRTILGEQGA 671 (806)
Q Consensus 607 ~~~ve~~i~rlaq~ara~GiHli~aTqrPsvdvitg~ika-n~p~riaf~v~s~~dSrtild~~ga 671 (806)
..++-..+..|.++|+--|+..++..|.....--++.--+ .-..+-...+..-.|.|..|...|.
T Consensus 146 ~~~~~~~~~~L~~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~l~~~~~ 211 (243)
T 1n0w_A 146 QXHLARFLRXLLRLADEFGVAVVITNQVVAQVDGAAXFAADPKKPIGGNIIAHASTTRLYLRKGRG 211 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEECST
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCEECCCCCCCCCCCHHHHCCEEEEEEECCC
T ss_conf 999999999999998762974999999982135543100023223542202774979999997599
No 63
>>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase, transferase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A (A:1-156,A:315-395)
Probab=85.33 E-value=0.47 Score=27.07 Aligned_cols=204 Identities=14% Similarity=0.107 Sum_probs=101.4
Q ss_pred ECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 41002023553047740679999999999982995784788852310011102770343122334304566899999999
Q gi|254780799|r 450 DLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCE 529 (806)
Q Consensus 450 DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~iPHLl~pVvTd~~kA~~aL~w~V~E 529 (806)
=|++-.+.+|-+.||||||.+.-..|+..+++..+. -+|+.-.+-| +.|
T Consensus 15 ~l~~~~~~li~apTGSGKT~~~l~~il~~~~~~~~r--vlvlaPt~~L-----------------------------~~Q 63 (237)
T 2jlq_A 15 IFRKKRLTIMDLHPGAGKTKRILPSIVREALLRRLR--TLILAPTRVV-----------------------------AAE 63 (237)
T ss_dssp GGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHTTCC--EEEEESSHHH-----------------------------HHH
T ss_pred HHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCE--EEEEEEHHHH-----------------------------HHH
T ss_conf 997699889994899848999999999987707987--9998329999-----------------------------999
Q ss_pred HHHHHHHHH-HCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCC
Q ss_conf 999999998-7089968999999998874478667754467765454322233223234698687763446888873210
Q gi|254780799|r 530 MEERYQKMS-KIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVARK 608 (806)
Q Consensus 530 Me~RY~l~a-~~~vRni~~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ivviiDElaDlmm~~~~ 608 (806)
|.++.+.+. ....+-..+.. ..+..+ +-.+......-.......-.|=+||+||.-.+ +-
T Consensus 64 ~~~~l~~~~~~~~~~~~~~~~-------~~~~~i--------~~~t~~~l~~~l~~~~~~~~~~lIIiDEaH~~----~~ 124 (237)
T 2jlq_A 64 MEEALRGLPIRYQTPAVKSDH-------TGREIV--------DLMCHATFTTRLLSSTRVPNYNLIVMDEAHFT----DP 124 (237)
T ss_dssp HHHHTTTSCEEECCTTCSCCC-------CSSCCE--------EEEEHHHHHHHHHHCSCCCCCSEEEEETTTCC----SH
T ss_pred HHHHHCCCCCCEEEEEEECCC-------CCCCEE--------EEECHHHHHHHHHCCCCCCCCCEEEECCEECC----CH
T ss_conf 999970878742579983045-------898769--------99796999999966876355557972330014----60
Q ss_pred HHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHCCCCEEEEEECCCCCCHHHCCCCCHHHHCCCCCEEEECCCCC
Q ss_conf 05889999998664142379999657775355435541102515876458664212338864578658875477368983
Q gi|254780799|r 609 DIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRISFQVSSKIDSRTILGEQGAEQLLGQGDMLYMTGGGR 688 (806)
Q Consensus 609 ~ve~~i~rlaq~ara~GiHli~aTqrPsvdvitg~ikan~p~riaf~v~s~~dSrtild~~gae~Llg~gdml~~~~~~~ 688 (806)
.-.....-+...++....++|+-|=.|.= .+-++-. ..=..-+.+||+.+- .-|-=-+||-|-..+
T Consensus 125 ~~~~~~~~i~~~~~~~~~~vI~lTATpp~--------~~~~~~~----~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 190 (237)
T 2jlq_A 125 CSVAARGYISTRVEMGEAAAIFMTATPPG--------STDDEDH----AHWTEAKMLLDNIYT--PEGIIPTLFGPEREK 190 (237)
T ss_dssp HHHHHHHHHHHHHHTTSCEEEEECSSCTT--------CCCCTTC----HHHHHHHHHHTTCCC--TTCCCCCCCGGGGGG
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCCCC--------CEEHHHH----HHHHHHHHHHHHHHC--CCCCCCCCCHHHHHC
T ss_conf 14555449998401677639997368875--------4572666----458999999987641--257532131366632
Q ss_pred EEEEEECCC-CHHHHHHHHHHHHHCCCCCC
Q ss_conf 258883348-98899999999971289742
Q gi|254780799|r 689 VQRIHGPFV-SDIEVEKVVSHLKTQGEAKY 717 (806)
Q Consensus 689 ~~r~~g~~v-~~~ev~~v~~~~~~q~~~~y 717 (806)
...+.|-|- .+++=.+.+++++...-|.+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (237)
T 2jlq_A 191 TQAIDGEFRLRGEQRKTFVELMRRGDLPVW 220 (237)
T ss_dssp CCCCTTTTCCCHHHHHHHHHHHHTSCCCHH
T ss_pred CCCCCCCEECCHHHHHHHHHHHHHCCCCHH
T ss_conf 446897156157778899998763566346
No 64
>>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* (C:115-314)
Probab=85.09 E-value=1.8 Score=22.60 Aligned_cols=66 Identities=14% Similarity=0.084 Sum_probs=44.8
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHH----HHHHCCCCHHHHCCCCCCHHHHHHHHH
Q ss_conf 35530477406799999999999829957847888523100----111027703431223343045668999
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKML----ELSVYDGIPNLLTPVVTNPQKAVTVLK 524 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~v----Els~Y~~iPHLl~pVvTd~~kA~~aL~ 524 (806)
+.|-|.+|||||--|+.+. -+|+..--.|.++-+|+... -++.|.+.++.-.-.......-.....
T Consensus 18 i~ivGp~GaGKTTli~~L~--~~l~~~~g~v~i~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (200)
T 3e70_C 18 IMFVGFNGSGKTTTIAKLA--NWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAY 87 (200)
T ss_dssp EEEECCTTSSHHHHHHHHH--HHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHH
T ss_pred EEEECCCCCCCCCHHHHHH--HHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCEECCCCCCCHHHHHH
T ss_conf 9996687787543089999--999966986236523445624899999998751675134688899899999
No 65
>>1rkb_A Protein AD-004, protein CGI-137; five-stranded parallel beta-sheet flanked by 7 alpha- helices, transferase; 2.00A {Homo sapiens} (A:)
Probab=84.83 E-value=0.66 Score=25.95 Aligned_cols=25 Identities=32% Similarity=0.614 Sum_probs=20.7
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 1002023553047740679999999
Q gi|254780799|r 451 LARMPHLLIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 451 LakMPHLLIAGtTGSGKSV~iN~iI 475 (806)
+-||+.++|.|.+|||||..-+.+=
T Consensus 1 M~k~~~I~i~G~~GsGKtTla~~La 25 (173)
T 1rkb_A 1 LMLLPNILLTGTPGVGKTTLGKELA 25 (173)
T ss_dssp CCCCCCEEEECSTTSSHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 9777859898899999899999999
No 66
>>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell membrane, GTP-binding, ION transport; 2.50A {Legionella pneumophila} (A:1-169,A:253-256)
Probab=84.64 E-value=0.78 Score=25.41 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=20.5
Q ss_pred CCEEEEEECCCCHHHHHHHHHHH
Q ss_conf 20235530477406799999999
Q gi|254780799|r 454 MPHLLIAGTTGSGKSVAINTMIL 476 (806)
Q Consensus 454 MPHLLIAGtTGSGKSV~iN~iI~ 476 (806)
||++.+.|.+|+|||--+|++.-
T Consensus 1 ~~kI~iiG~~~vGKTsL~~~l~~ 23 (173)
T 3iby_A 1 MTHALLIGNPNCGKTTLFNALTN 23 (173)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
T ss_conf 98899989999689999999948
No 67
>>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} (A:1-185)
Probab=84.62 E-value=0.87 Score=25.06 Aligned_cols=36 Identities=28% Similarity=0.398 Sum_probs=29.6
Q ss_pred ECCCCCE-EEEEECCCCHHHHHHHHHHHHHHHHCCHH
Q ss_conf 4100202-35530477406799999999999829957
Q gi|254780799|r 450 DLARMPH-LLIAGTTGSGKSVAINTMILSLLYRMTPA 485 (806)
Q Consensus 450 DLakMPH-LLIAGtTGSGKSV~iN~iI~SlLyk~~P~ 485 (806)
+-.++|| +|..|-.|+||+-...++.-.+.+.....
T Consensus 40 ~~~~~~~~lLl~GppG~GKt~la~~lA~~l~~~~~~~ 76 (185)
T 1njg_A 40 SLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT 76 (185)
T ss_dssp HHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSC
T ss_pred HCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 8599870698889998768999999999846854666
No 68
>>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} (A:332-428,A:499-582)
Probab=84.55 E-value=1.2 Score=24.11 Aligned_cols=44 Identities=23% Similarity=0.328 Sum_probs=28.8
Q ss_pred CEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEEC
Q ss_conf 6678541002023553047740679999999999982995784788852
Q gi|254780799|r 445 KPIIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMID 493 (806)
Q Consensus 445 ~pvv~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliD 493 (806)
+.+-.++.+-=++-|-|.+|||||-.+|.| .+.-+-+-==|.||
T Consensus 29 ~~vs~~i~~Ge~vaivG~sGsGKSTll~~l-----~gl~~p~~G~I~i~ 72 (181)
T 3b60_A 29 RNINLKIPAGKTVALVGRSGSGKSTIASLI-----TRFYDIDEGHILMD 72 (181)
T ss_dssp EEEEEEECTTCEEEEEECTTSSHHHHHHHH-----TTTTCCSEEEEEET
T ss_pred EEEEEEECCCEEEEEECCCCCCHHHHHHHH-----HCCCCCCCEEEEEC
T ss_conf 047999837859999899998799999998-----17766897089999
No 69
>>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} (A:23-279)
Probab=84.43 E-value=1 Score=24.49 Aligned_cols=49 Identities=10% Similarity=0.259 Sum_probs=35.7
Q ss_pred CCCEEEEEHHHHHHHHHHCC---CHHHHHHHHHHHHHHHCCEEEEEEECCCC
Q ss_conf 69868776344688887321---00588999999866414237999965777
Q gi|254780799|r 588 HMPYIVVVIDEMADLMMVAR---KDIESAVQRLAQMARASGIHVIMATQRPS 636 (806)
Q Consensus 588 ~lp~ivviiDElaDlmm~~~---~~ve~~i~rlaq~ara~GiHli~aTqrPs 636 (806)
....=++|||-+..++-... .++-....+|.+.|+..|++.++.-|-..
T Consensus 109 ~~~~~~iviD~i~~~~~~~~~~~~~~~~~~~~L~~la~~~~~~v~l~~~~~~ 160 (257)
T 1nlf_A 109 AEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASK 160 (257)
T ss_dssp HTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred CCCCCEEEECCHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 2578789946366523676552689999999999999975997999857786
No 70
>>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} (A:58-294)
Probab=84.37 E-value=0.77 Score=25.46 Aligned_cols=27 Identities=30% Similarity=0.517 Sum_probs=23.7
Q ss_pred ECCCCCEEEEEECCCCHHHHHHHHHHH
Q ss_conf 410020235530477406799999999
Q gi|254780799|r 450 DLARMPHLLIAGTTGSGKSVAINTMIL 476 (806)
Q Consensus 450 DLakMPHLLIAGtTGSGKSV~iN~iI~ 476 (806)
++.+-|++.|.|..+||||--+|+++-
T Consensus 4 ~~~~~~~V~vvG~~~~GKSTLlNaLlg 30 (237)
T 2qpt_A 4 DFDGKPMVLVAGQYSTGKTSFIQYLLE 30 (237)
T ss_dssp TTSSCCEEEEEEBTTSCHHHHHHHHHT
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 336897699989999819999999977
No 71
>>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} (A:1-67,A:132-252)
Probab=84.32 E-value=0.57 Score=26.44 Aligned_cols=74 Identities=16% Similarity=0.270 Sum_probs=37.5
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHC---CHHHEEEEEECCCHHHHHHCCCCHHHHC----------CCCCCHHHHHHHH
Q ss_conf 35530477406799999999999829---9578478885231001110277034312----------2334304566899
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMILSLLYRM---TPAQCRLIMIDPKMLELSVYDGIPNLLT----------PVVTNPQKAVTVL 523 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~SlLyk~---~P~evkliliDPK~vEls~Y~~iPHLl~----------pVvTd~~kA~~aL 523 (806)
.-|||.+|||||..-+.+.--|=... ++..|-.+=+|== -+.=+.||+ |+++ -|--|+-....-.
T Consensus 25 i~i~G~~gsGKst~a~~l~~~l~~~~~~~~~~~~~~~~~D~f-~dviIvEG~-y~l~~~~l~~~~D~~Ifid~~~~~~l~ 102 (188)
T 1uj2_A 25 IGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSF-YDVVLFEGI-LAFYSQEVRDLFQMKLFVDTDADTRLS 102 (188)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGG-BSEEEEECT-TTTSSHHHHHHCSEEEEEECCHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCC-CCCEEEEEC-CCCCCHHHHHHCCEEEEEECCHHHHHH
T ss_conf 998898977889999999999663555556654048724311-263378611-001450342001258999688899999
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q gi|254780799|r 524 KWLVCEMEE 532 (806)
Q Consensus 524 ~w~V~EMe~ 532 (806)
+++.+.+..
T Consensus 103 R~i~Rd~~~ 111 (188)
T 1uj2_A 103 RRVLRDISE 111 (188)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 998651665
No 72
>>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphoprotein, RNA-binding, ATP-binding; 3.50A {Homo sapiens} (A:1-249)
Probab=84.13 E-value=0.5 Score=26.86 Aligned_cols=52 Identities=15% Similarity=0.224 Sum_probs=41.5
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCCHH
Q ss_conf 2355304774067999999999998299578478885231001110277034
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPN 507 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~iPH 507 (806)
|++++..|||||.-|---=++..+++..+..-.++++-+.-+-..+|+-.=+
T Consensus 79 dvi~~A~TGSGKTlay~lp~l~~i~~~~~~~~~~ii~ptrel~~qi~~~~~~ 130 (249)
T 3eiq_A 79 DVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMA 130 (249)
T ss_dssp CEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHH
T ss_pred CEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHH
T ss_conf 8899878985388999999999865525887299996778999999999875
No 73
>>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} (A:1-177)
Probab=84.10 E-value=0.84 Score=25.15 Aligned_cols=27 Identities=33% Similarity=0.362 Sum_probs=20.6
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 002023553047740679999999999
Q gi|254780799|r 452 ARMPHLLIAGTTGSGKSVAINTMILSL 478 (806)
Q Consensus 452 akMPHLLIAGtTGSGKSV~iN~iI~Sl 478 (806)
.+=+...+.|.++.|||-.||+++-+-
T Consensus 118 ~~~~~v~ivG~pNvGKSSLiN~L~~~~ 144 (177)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKN 144 (177)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 876057761288552799887873877
No 74
>>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone; HET: MSE; 1.70A {Methylobacterium extorquens AM1} (A:)
Probab=84.07 E-value=1.4 Score=23.50 Aligned_cols=32 Identities=28% Similarity=0.277 Sum_probs=26.7
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 00202355304774067999999999998299
Q gi|254780799|r 452 ARMPHLLIAGTTGSGKSVAINTMILSLLYRMT 483 (806)
Q Consensus 452 akMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~ 483 (806)
.+-|...+.|.||+|||--+|++.-+...+..
T Consensus 53 ~~~~~V~ivG~pnaGKSTLln~L~~~~~~~~~ 84 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGH 84 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 88249962289998899999999999851898
No 75
>>3kx2_B PRE-mRNA-splicing factor ATP-dependent RNA helicase PRP43; REC-A domains, OB fold, winged-helix domain, ATP-binding, mRNA processing; HET: ADP; 2.20A {Saccharomyces cerevisiae} (B:48-269)
Probab=83.91 E-value=0.99 Score=24.61 Aligned_cols=144 Identities=14% Similarity=0.217 Sum_probs=73.5
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 23553047740679999999999982995784788852310011102770343122334304566899999999999999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEMEERYQ 535 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~iPHLl~pVvTd~~kA~~aL~w~V~EMe~RY~ 535 (806)
.++|.|.|||||+.+.--.|+.-+++.. ..+|-+.+=|-+ -++.++.+|++
T Consensus 64 ~i~v~a~TGsGKT~~~~~~il~~~~~~~-~~~~vlil~Pt~----------------------------~La~q~~~~~~ 114 (222)
T 3kx2_B 64 IMVFVGETGSGKTTQIPQFVLFDEMPHL-ENTQVACTQPRR----------------------------VAAMSVAQRVA 114 (222)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHCGGG-GTCEEEEEESCH----------------------------HHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC-CCCEEEEECCCH----------------------------HHHHHHHHHHH
T ss_conf 7999849989877799999998414037-998899928978----------------------------99999999999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCCHHHHH
Q ss_conf 998708996899999999887447866775446776--545432223322323469868776344688887321005889
Q gi|254780799|r 536 KMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFD--RKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVARKDIESA 613 (806)
Q Consensus 536 l~a~~~vRni~~yN~k~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~lp~ivviiDElaDlmm~~~~~ve~~ 613 (806)
-+....+....++-.. +.. ....+-+ -.|++.....-.-..-.+=++.++|||-||.|+.. +....
T Consensus 115 ~~~~~~~~~~~~~~~~-------~~~---~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iv~De~d~~~~~--~~~~~ 182 (222)
T 3kx2_B 115 EEMDVKLGEEVGYSIR-------FEN---KTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLAT--DILMG 182 (222)
T ss_dssp HHTTCCBTTTEEEEET-------TEE---ECCTTCCEEEEEHHHHHHHHHHCTTCTTEEEEEECCGGGCCHHH--HHHHH
T ss_pred HHHCCCCCCEEEEEEC-------CCC---CCCCCCEEEEECCHHHHHHHHHCCCCCCCCEEEECCHHHCCHHH--HHHHH
T ss_conf 9848998884668960-------687---78998369997338999998648454563369845454257668--99999
Q ss_pred HHHHHHHHHHCCEEEEEEECCCCCCCCC
Q ss_conf 9999986641423799996577753554
Q gi|254780799|r 614 VQRLAQMARASGIHVIMATQRPSVDVIT 641 (806)
Q Consensus 614 i~rlaq~ara~GiHli~aTqrPsvdvit 641 (806)
+.++.+.-| -..++|+.|..|.++.+.
T Consensus 183 ~~~~~~~~~-~~~q~il~SAT~~~~~~~ 209 (222)
T 3kx2_B 183 LLKQVVKRR-PDLKIIIMSATLDAEKFQ 209 (222)
T ss_dssp HHHHHHHHC-TTCEEEEEESSSCCHHHH
T ss_pred HHHHHHHHC-CCCEEEEECCCCCHHHHH
T ss_conf 999999858-983799943777678999
No 76
>>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} (A:)
Probab=83.54 E-value=1.3 Score=23.81 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=29.2
Q ss_pred ECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCH
Q ss_conf 41002023553047740679999999999982995
Q gi|254780799|r 450 DLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTP 484 (806)
Q Consensus 450 DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P 484 (806)
.+.+.+||++-|.+|+|||--.++|.-.++.+...
T Consensus 50 ~~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~~~~ 84 (202)
T 2w58_A 50 PGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVS 84 (202)
T ss_dssp SSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 67668748998999897899999999997542573
No 77
>>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* (A:1-158)
Probab=83.50 E-value=0.98 Score=24.66 Aligned_cols=78 Identities=18% Similarity=0.211 Sum_probs=43.1
Q ss_pred CCCEEEEEECCCCCCEEEEHHHCCCHHHHHCCCCCHHHC---------CCCCCCCEEEEECCCCCEEEEEECCCCHHHHH
Q ss_conf 861255530245662387342307213430221000210---------45666666785410020235530477406799
Q gi|254780799|r 400 RRNAIGIELPNDIRETVMLRDLIVSRVFEKNQCDLAINL---------GKSIEGKPIIADLARMPHLLIAGTTGSGKSVA 470 (806)
Q Consensus 400 GK~~VGIEiPN~~r~~V~lreil~s~~f~~s~~~L~iaL---------GKdI~G~pvv~DLakMPHLLIAGtTGSGKSV~ 470 (806)
+.-..-++-+|..+..|.-+.-+..+.-........... ..........-...+.+..+|.|.+++|||--
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iiG~pNvGKSTL 115 (158)
T 3cnl_A 36 ATSAYGVDFSRKETIILLNKVDIADEKTTKKWVEFFKKQGKRVITTHKGEPRKVLLKKLSFDRLARVLIVGVPNTGKSTI 115 (158)
T ss_dssp TTSCTTSCCTTSEEEEEEECGGGSCHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHHCCCTTCEEEEEESTTSSHHHH
T ss_pred CCCCHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCCCCEEEEECCCCCCHHHH
T ss_conf 77698789649988999989768998999999998774298788623677289999985136665899966766149999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780799|r 471 INTMILS 477 (806)
Q Consensus 471 iN~iI~S 477 (806)
||+++-.
T Consensus 116 iN~L~~~ 122 (158)
T 3cnl_A 116 INKLKGK 122 (158)
T ss_dssp HHHHHTT
T ss_pred HHHHHCC
T ss_conf 9997477
No 78
>>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* (A:223-402)
Probab=83.27 E-value=0.54 Score=26.56 Aligned_cols=25 Identities=32% Similarity=0.514 Sum_probs=22.0
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 1002023553047740679999999
Q gi|254780799|r 451 LARMPHLLIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 451 LakMPHLLIAGtTGSGKSV~iN~iI 475 (806)
..+.|++.|.|.+|+|||--+|++.
T Consensus 8 ~~~~~~I~iiG~~nvGKSSLin~l~ 32 (180)
T 3gee_A 8 VSEGVSTVIAGKPNAGKSTLLNTLL 32 (180)
T ss_dssp HHHCEEEEEECCTTSSHHHHHHHCC
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHH
T ss_conf 5248716876633210679999983
No 79
>>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} (A:1-167)
Probab=83.04 E-value=0.88 Score=25.00 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=19.5
Q ss_pred CEEEEEECCCCHHHHHHHHHH
Q ss_conf 023553047740679999999
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~iI 475 (806)
|+..++|-+|+|||--+|++.
T Consensus 4 ~~I~iiG~~nvGKSSLin~l~ 24 (167)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIA 24 (167)
T ss_dssp CEEEEECSTTSSHHHHHHHHE
T ss_pred CEEEEECCCCCCHHHHHHHHH
T ss_conf 999999899998999999986
No 80
>>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics, NPPSFA; HET: GDP; 1.96A {Thermus thermophilus HB8} (A:)
Probab=82.88 E-value=0.99 Score=24.62 Aligned_cols=46 Identities=20% Similarity=0.188 Sum_probs=29.0
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHHH--HHCCHHHEEEEEECCCHHHH
Q ss_conf 20235530477406799999999999--82995784788852310011
Q gi|254780799|r 454 MPHLLIAGTTGSGKSVAINTMILSLL--YRMTPAQCRLIMIDPKMLEL 499 (806)
Q Consensus 454 MPHLLIAGtTGSGKSV~iN~iI~SlL--yk~~P~evkliliDPK~vEl 499 (806)
||.+++.|-+|+|||--+|.+.-.=. -..+|..-+....+....+.
T Consensus 1 l~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR 48 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCEEEEEEECC
T ss_conf 989999999998499999999789962551257642210023431012
No 81
>>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} (A:69-265)
Probab=82.79 E-value=0.95 Score=24.75 Aligned_cols=22 Identities=45% Similarity=0.554 Sum_probs=19.0
Q ss_pred EEEEEECCCCHHHHHHHHHHHH
Q ss_conf 2355304774067999999999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILS 477 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~S 477 (806)
..++.|-||+|||--+|++.-+
T Consensus 3 ~I~lvG~~~~GKSsLin~l~g~ 24 (197)
T 1tq4_A 3 NVAVTGETGSGKSSFINTLRGI 24 (197)
T ss_dssp EEEEEECTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 7999789998689999999587
No 82
>>3b6e_A Interferon-induced helicase C domain-containing protein 1; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, structural genomics; 1.60A {Homo sapiens} (A:31-216)
Probab=82.71 E-value=1 Score=24.56 Aligned_cols=30 Identities=27% Similarity=0.284 Sum_probs=23.9
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHH
Q ss_conf 235530477406799999999999829957
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPA 485 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~ 485 (806)
+++|+..|||||+.+.-..+...+.+....
T Consensus 20 ~~li~apTGsGKT~~~~~~~l~~~~~~~~~ 49 (186)
T 3b6e_A 20 NIIICLPTGSGKTRVAVYIAKDHLDKKKKA 49 (186)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 989990688721499999999998740244
No 83
>>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix DNA binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus} (A:1-127)
Probab=82.59 E-value=1.1 Score=24.26 Aligned_cols=60 Identities=12% Similarity=0.322 Sum_probs=50.5
Q ss_pred HHHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHH-HCCCCCEEEECHHHH
Q ss_conf 999999996598500014222001177899999999977986802-278872673171253
Q gi|254780799|r 744 KQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPA-SSTGKREILISSMEE 803 (806)
Q Consensus 744 ~~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~-~g~~~r~vl~~~~~~ 803 (806)
-.++.++...+..|.+-|.+++.|--+-+.|+++.||++|+|--. +..-.|.+.+.-.++
T Consensus 45 ~~iL~~i~~~~~~t~~~la~~~~i~~~~vs~~i~~L~~~glV~r~~~~~DkR~~~l~LT~~ 105 (127)
T 2rdp_A 45 FVALQWLLEEGDLTVGELSNKXYLACSTTTDLVDRXERNGLVARVRDEHDRRVVRIRLLEK 105 (127)
T ss_dssp HHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCHH
T ss_conf 9999999977994999999987845244889999899788651001245564011100487
No 84
>>2j28_9 Signal recognition particle 54; ribosome, protein/RNA complex; 8.0A {Escherichia coli} (9:92-330)
Probab=82.49 E-value=0.69 Score=25.78 Aligned_cols=159 Identities=11% Similarity=0.096 Sum_probs=75.7
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCCHHHHCCCCCCHHH--HHHHHHHHHH
Q ss_conf 10020235530477406799999999999829957847888523100111027703431223343045--6689999999
Q gi|254780799|r 451 LARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQK--AVTVLKWLVC 528 (806)
Q Consensus 451 LakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~iPHLl~pVvTd~~k--A~~aL~w~V~ 528 (806)
+++=.-++|.|.||||||-.|=-+++..-++. ...+.. ++|||.. |...++..-.
T Consensus 5 ~~~~~vv~i~G~tGsGKST~ipk~~~~~~~~~-~~~~~i----------------------~~~~prr~~a~~~~~~~a~ 61 (239)
T 2j28_9 5 AQPPAVVLMAGLQGAGKTTSVGKLGKFLREKH-KKKVLV----------------------VSADVYRPAAIKQLETLAE 61 (239)
T ss_dssp SSSSCEEEEECSSSSSSTTTHHHHHHHHHTSS-SCCCCB----------------------CCCCCSSSCSHHHHHHHHH
T ss_pred CCCCEEEEEEEECCCCCCHHHHHHHHHHHHHC-CCEEEE----------------------EECCCCCCCHHHHHHHHHH
T ss_conf 89986999996328875136999999999847-985899----------------------9645455324367888664
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCC
Q ss_conf 99999999987089968999999998874478667754467765454322233223234698687763446888873210
Q gi|254780799|r 529 EMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVARK 608 (806)
Q Consensus 529 EMe~RY~l~a~~~vRni~~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ivviiDElaDlmm~~~~ 608 (806)
||.- ......+...-..+-.... .+...-.|=+|||||.....+ .-
T Consensus 62 ~~~~--~~~~~~~~~~~~~~~~~~~------------------------------~~~~l~~~~~viiDe~her~~--~~ 107 (239)
T 2j28_9 62 QVGV--DFFPSDVGQKPVDIVNAAL------------------------------KEAKLKFYDVLLVDTAGRLHV--DE 107 (239)
T ss_dssp HTTC--CCCCCSSCCCTTHHHHHHH------------------------------HHHHHTTCSCEEEEECCCCSS--HH
T ss_pred HCCC--CHHHCCCHHHHHHHHHHHH------------------------------HHHHHCCCCEEEECCCCCHHH--HH
T ss_conf 1354--3211020347899999988------------------------------899865885899758862044--78
Q ss_pred HHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHH----HCCCCEEEEEECCCCCCHHHCC
Q ss_conf 0588999999866414237999965777535543554----1102515876458664212338
Q gi|254780799|r 609 DIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIK----ANFPTRISFQVSSKIDSRTILG 667 (806)
Q Consensus 609 ~ve~~i~rlaq~ara~GiHli~aTqrPsvdvitg~ik----an~p~riaf~v~s~~dSrtild 667 (806)
|+-..+.++....|-.-+++++.. .-..+.+..... ..++.++-.++-......++.+
T Consensus 108 dlll~l~~~~~~~~~~~~liv~sa-t~~~~~l~~~~~~~~~~~~~~~~~~k~d~~~~~~~~~~ 169 (239)
T 2j28_9 108 AMMDEIKQVHASINPVETLFVVDA-MTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALS 169 (239)
T ss_dssp HHHHHHHHHHHHHCCSEEEEEEET-TTGGGGHHHHHHHHTTCSSCEEEEECSSSCSCCTHHHH
T ss_pred HHHHHHHHHHHCCCCCEEEEEECC-CCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHH
T ss_conf 899999999740698169997203-46706889999998726885178850256664389999
No 85
>>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferase; nucleoside modification, isopentenyl-tRNA transferase, MIAA, transferase/RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A (A:1-205,A:290-316)
Probab=82.46 E-value=0.94 Score=24.78 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=19.0
Q ss_pred CCC-EEEEEECCCCHHHHHHHHHHH
Q ss_conf 020-235530477406799999999
Q gi|254780799|r 453 RMP-HLLIAGTTGSGKSVAINTMIL 476 (806)
Q Consensus 453 kMP-HLLIAGtTGSGKSV~iN~iI~ 476 (806)
+|| =+.|+|.||||||--.+.+.-
T Consensus 8 ~~~~iI~I~GpSGsGKttla~~La~ 32 (232)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRK 32 (232)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 8995699989883279999999999
No 86
>>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} (A:1-145,A:303-387)
Probab=81.80 E-value=0.98 Score=24.66 Aligned_cols=187 Identities=17% Similarity=0.177 Sum_probs=101.8
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 10020235530477406799999999999829957847888523100111027703431223343045668999999999
Q gi|254780799|r 451 LARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEM 530 (806)
Q Consensus 451 LakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~iPHLl~pVvTd~~kA~~aL~w~V~EM 530 (806)
|.+=...+|.+.||||||..+.-.|+-..++.. .|.+.+=|.++ +++||
T Consensus 5 l~k~~~~iI~~pTGsGKT~~~l~~i~~~~~~~~---~rvLvL~Ptr~----------------------------L~~q~ 53 (230)
T 1yks_A 5 LKKGMTTVLDFHPGAGKTRRFLPQILAECARRR---LRTLVLAPTRV----------------------------VLSEM 53 (230)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTT---CCEEEEESSHH----------------------------HHHHH
T ss_pred HHCCCEEEEEECCCCCHHHHHHHHHHHHHHHCC---CEEEEEHHHHH----------------------------HHHHH
T ss_conf 743983999978997498999999999986079---92999845999----------------------------99999
Q ss_pred HHHHHHHHHC----------------CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 9999999870----------------899689999999988744786677544677654543222332232346986877
Q gi|254780799|r 531 EERYQKMSKI----------------GVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVV 594 (806)
Q Consensus 531 e~RY~l~a~~----------------~vRni~~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ivv 594 (806)
.++++-+--. .+-....+..+. ......--|=+|
T Consensus 54 ~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~------------------------------~~~~~~~~~~lI 103 (230)
T 1yks_A 54 KEAFHGLDVKFHTQAFSAHGSGREVIDAMCHATLTYRM------------------------------LEPTRVVNWEVI 103 (230)
T ss_dssp HHHTTTSCEEEESSCCCCCCCSSCCEEEEEHHHHHHHH------------------------------TSSSCCCCCSEE
T ss_pred HHHHHCCCCCEEEEEEEECCCCCEEEEEECCHHHHHHH------------------------------HCCCCCCCCCEE
T ss_conf 99984668744877899307998089995938899998------------------------------568651463479
Q ss_pred EHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCC-CCCCHHHHHCCCCEEEEEECCCCCCHHHCCCCCHHH
Q ss_conf 6344688887321005889999998664142379999657775-355435541102515876458664212338864578
Q gi|254780799|r 595 VIDEMADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPSV-DVITGTIKANFPTRISFQVSSKIDSRTILGEQGAEQ 673 (806)
Q Consensus 595 iiDElaDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPsv-dvitg~ikan~p~riaf~v~s~~dSrtild~~gae~ 673 (806)
||||.-.+ +.+-.....-+..+++....|+|+-|=.|.- +.-+++. .=..-+.+||+.+--.
T Consensus 104 IiDEaH~~----~~~s~~ar~~~~~~~~~~~~~vI~lTATPp~~~~~~~~~-------------~~~~~~~~~~~~~~~~ 166 (230)
T 1yks_A 104 IMDEAHFL----DPASIAARGWAAHRARANESATILMTATPPGTSDNAHHV-------------CWLEASMLLDNMEVRG 166 (230)
T ss_dssp EETTTTCC----SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCCTTBH-------------HHHHHHHHHTTSCCGG
T ss_pred EECCCCCC----CCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHC-------------CHHHHHHHHHHHHCCC
T ss_conf 82420024----700337889999864377661999957654553211103-------------3346999987521457
Q ss_pred HCCCCCEEEECCCCCEEEEEECCC-CHHHHHHHHHHHHHCCCCCC
Q ss_conf 658875477368983258883348-98899999999971289742
Q gi|254780799|r 674 LLGQGDMLYMTGGGRVQRIHGPFV-SDIEVEKVVSHLKTQGEAKY 717 (806)
Q Consensus 674 Llg~gdml~~~~~~~~~r~~g~~v-~~~ev~~v~~~~~~q~~~~y 717 (806)
|-=-.||-|-..+...+.|-|- .+++=.+.+++++...-|.+
T Consensus 167 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (230)
T 1yks_A 167 --GMVAPLYGVEGTKTPVSPGEMRLRDDQRKVFRELVRNCDLPVW 209 (230)
T ss_dssp --GCCCCCSTTHHHHSSSCTTTTCCCHHHHHHHHHHHHTTCCCHH
T ss_pred --CCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCHH
T ss_conf --7664333425551347885422025578899999875467588
No 87
>>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} (A:88-255)
Probab=81.76 E-value=0.64 Score=26.05 Aligned_cols=48 Identities=19% Similarity=0.038 Sum_probs=31.0
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCC
Q ss_conf 002023553047740679999999999982995784788852310011102770
Q gi|254780799|r 452 ARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGI 505 (806)
Q Consensus 452 akMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~i 505 (806)
-+.-+.+++..|||||+.+.=. .-.+...-.++++.+|.+.-..++.+
T Consensus 19 l~~~~~ii~~~tGsGKT~~~~~------~~~~~~~~~~vi~P~~~L~~q~~~~~ 66 (168)
T 2fwr_A 19 LVDKRGCIVLPTGSGKTHVAMA------AINELSTPTLIVVPTLALAEQWKERL 66 (168)
T ss_dssp TTTTEEEEECCTTSCHHHHHHH------HHHHHCSCEEEEESSHHHHHHHHHHG
T ss_pred HHCCCCEEECCCCCCHHHHHHH------HHHHHCCCEEEEECCHHHHHHHHHHH
T ss_conf 9689989986999889999999------99981899899978801799999999
No 88
>>1xpp_A TA1416, DNA-directed RNA polymerase subunit L; structural genomics, protein structure initiative, MCSG; 1.60A {Thermoplasma acidophilum} (A:)
Probab=81.75 E-value=0.74 Score=25.55 Aligned_cols=55 Identities=18% Similarity=0.323 Sum_probs=43.1
Q ss_pred CCCHHHHHHCCCCHHHHCC-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 2310011102770343122-----334304566899999999999999998708996899999999887
Q gi|254780799|r 493 DPKMLELSVYDGIPNLLTP-----VVTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYH 556 (806)
Q Consensus 493 DPK~vEls~Y~~iPHLl~p-----VvTd~~kA~~aL~w~V~EMe~RY~l~a~~~vRni~~yN~k~~~~~ 556 (806)
|| .|++..|. |||=+.+ |-|+...+..||++++..+...++.|.+ .|++.+++.+
T Consensus 45 ~p-~V~fAgY~-ipHPl~~~~~lrIqT~~~~p~~al~~A~~~l~~~~~~l~~-------~f~~~~~~~~ 104 (115)
T 1xpp_A 45 DD-QVDEARYY-IKHPVIDNPQIYVRVKSGKPQSAIKRAVRKLSKLYEDLGT-------QFQKEFQRYE 104 (115)
T ss_dssp CT-TEEEEEEE-CSSTTTSCCEEEEEESSSCHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred CC-CEEEEEEE-CCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_conf 99-82699874-6897768718999818999799999999999999999999-------9999999998
No 89
>>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} (A:1-234)
Probab=81.56 E-value=1.9 Score=22.50 Aligned_cols=31 Identities=26% Similarity=0.276 Sum_probs=25.5
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 1002023553047740679999999999982
Q gi|254780799|r 451 LARMPHLLIAGTTGSGKSVAINTMILSLLYR 481 (806)
Q Consensus 451 LakMPHLLIAGtTGSGKSV~iN~iI~SlLyk 481 (806)
..+-+...++|.||.|||--||++.=+--++
T Consensus 159 ~~~~~~i~lvG~sNvGKSSLiN~L~~~~~~~ 189 (234)
T 3ec1_A 159 YREGGDVYVVGCTNVGKSTFINRIIEEATGK 189 (234)
T ss_dssp HHTTSCEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred HCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 2147616986589854889999876552246
No 90
>>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A (A:1-200,A:283-322)
Probab=81.56 E-value=1.1 Score=24.38 Aligned_cols=42 Identities=24% Similarity=0.296 Sum_probs=26.7
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCCHH
Q ss_conf 02355304774067999999999998299578478885231001110277034
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPN 507 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~iPH 507 (806)
|=+.|.|+||||||--.|.+. +.. ...++-.|.. .+|.++||
T Consensus 4 kiiii~GPSGsGKstLa~~La-----~~~--~~~ii~~dS~----qiy~~~~i 45 (240)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVXLA-----KRL--NGEVISGDSX----QVYRGXDI 45 (240)
T ss_dssp EEEEEECCTTSCHHHHHHHHH-----HTT--TEEEEECCGG----GGBTTCCT
T ss_pred CEEEEECCCCCCHHHHHHHHH-----HHC--CCEEEEEEHH----HHCCCCCE
T ss_conf 679998987216999999999-----987--9969962027----53599966
No 91
>>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} (A:1-160)
Probab=81.44 E-value=1.7 Score=22.94 Aligned_cols=45 Identities=20% Similarity=0.242 Sum_probs=33.2
Q ss_pred CCCCEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCC
Q ss_conf 46986877634468888732100588999999866414237999965777
Q gi|254780799|r 587 QHMPYIVVVIDEMADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPS 636 (806)
Q Consensus 587 ~~lp~ivviiDElaDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPs 636 (806)
....+-|+++||.-.+-+-+ ..-..+..+-.-.++-+|+||-+|+
T Consensus 99 ~~~~~~v~~ide~~~~~~~~-----~~~~l~~~~~~~~~~~~I~~tN~~~ 143 (160)
T 2chg_A 99 GGAPFKIIFLDEADALTADA-----QAALRRTMEMYSKSCRFILSCNYVS 143 (160)
T ss_dssp TTCSCEEEEEETGGGSCHHH-----HHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred CCCCCEEEEECHHHHHHHHH-----HHHHHHHCCCCCCCCEEEECCCCHH
T ss_conf 38970799850033411669-----9997645126874303332336743
No 92
>>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} (A:)
Probab=81.32 E-value=1.6 Score=23.15 Aligned_cols=47 Identities=21% Similarity=0.338 Sum_probs=32.3
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHH
Q ss_conf 100202355304774067999999999998299578478885231001110
Q gi|254780799|r 451 LARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSV 501 (806)
Q Consensus 451 LakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~ 501 (806)
-.+||=.+|.|-+||||+-.++.++-. .+++..|...|+--.-+..+
T Consensus 3 ~~~~~vi~i~G~~GsGKTTll~~L~~~----l~~~g~kv~~i~~d~~~~~~ 49 (174)
T 1np6_A 3 KTMIPLLAFAAWSGTGKTTLLKKLIPA----LCARGIRPGLIKHTHHDMDV 49 (174)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHH----HHHTTCCEEEEEECCC----
T ss_pred CEEEEEEEEEECCCCCHHHHHHHHHHH----HHHCCCEEEEEEECCCCCCC
T ss_conf 626107999925999899999999999----99779848899825887678
No 93
>>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} (D:111-360,D:596-608)
Probab=81.23 E-value=2.3 Score=21.94 Aligned_cols=30 Identities=20% Similarity=0.407 Sum_probs=26.0
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHC
Q ss_conf 020235530477406799999999999829
Q gi|254780799|r 453 RMPHLLIAGTTGSGKSVAINTMILSLLYRM 482 (806)
Q Consensus 453 kMPHLLIAGtTGSGKSV~iN~iI~SlLyk~ 482 (806)
.=++.||-|-.||||+..+-.+|..|+...
T Consensus 53 ~~~~~lI~GppGTGKT~~l~~~i~~l~~~~ 82 (263)
T 1w36_D 53 TRRISVISGGPGTGKTTTVAKLLAALIQMA 82 (263)
T ss_dssp TBSEEEEECCTTSTHHHHHHHHHHHHHHTC
T ss_pred HCCEEEEECCCCCCCCCHHHHHHHHHHHHH
T ss_conf 379079846999864032999999999975
No 94
>>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A (A:44-114)
Probab=81.05 E-value=1.5 Score=23.28 Aligned_cols=59 Identities=15% Similarity=0.347 Sum_probs=48.4
Q ss_pred HHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHH-HCCCCCEEEECHHHH
Q ss_conf 99999996598500014222001177899999999977986802-278872673171253
Q gi|254780799|r 745 QAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPA-SSTGKREILISSMEE 803 (806)
Q Consensus 745 ~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~-~g~~~r~vl~~~~~~ 803 (806)
.++..+...+..+.|-|-+++.+-=.-+.|++..||++|+|--. +..-.|.+.+.-.++
T Consensus 8 ~iL~~i~~~~~~t~~~la~~~~i~~~~~s~~i~~L~~~g~i~r~~~~~D~R~~~i~lT~~ 67 (71)
T 2pex_A 8 LVMLVLWETDERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRTRAASDERQVIIALTET 67 (71)
T ss_dssp HHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECCC
T ss_conf 999999847998999999997968878999999999889989810898878479888935
No 95
>>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A (A:1-160)
Probab=81.03 E-value=1.5 Score=23.21 Aligned_cols=109 Identities=18% Similarity=0.202 Sum_probs=61.5
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 10020235530477406799999999999829957847888523100111027703431223343045668999999999
Q gi|254780799|r 451 LARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEM 530 (806)
Q Consensus 451 LakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~iPHLl~pVvTd~~kA~~aL~w~V~EM 530 (806)
..+.||+|.-|..|+||+-+..++--.+.... ..--.--+.++...+...+
T Consensus 35 ~~~~~~~Ll~GppGtGKT~~a~~la~~l~~~~-~~~~~~~~~~~~~~~~~~~---------------------------- 85 (160)
T 2chq_A 35 RKNIPHLLFSGPPGTGKTATAIALARDLFGEN-WRDNFIEMNASDERGIDVV---------------------------- 85 (160)
T ss_dssp TTCCCCEEEESSSSSSHHHHHHHHHHHHHTTC-HHHHCEEEETTSTTCTTTS----------------------------
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC-CCCCEEEEECCCCCCCCCC----------------------------
T ss_conf 79987799889799999999999998725454-5651467645566886753----------------------------
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCCHH
Q ss_conf 99999998708996899999999887447866775446776545432223322323469868776344688887321005
Q gi|254780799|r 531 EERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVARKDI 610 (806)
Q Consensus 531 e~RY~l~a~~~vRni~~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ivviiDElaDlmm~~~~~v 610 (806)
........ . . .......+-|+++||.-.+-+-+..
T Consensus 86 -------------~~~~~~~~-~----~-------------------------~~~~~~~~~v~~ide~~~~~~~~~~-- 120 (160)
T 2chq_A 86 -------------RHKIKEFA-R----T-------------------------APIGGAPFKIIFLDEADALTADAQA-- 120 (160)
T ss_dssp -------------SHHHHHHH-H----S-------------------------CCSSSCCCEEEEEETGGGSCHHHHH--
T ss_pred -------------CCHHHHHH-H----C-------------------------CCCCCCCEEEEEEECCCCCHHHHHH--
T ss_conf -------------11124543-2----0-------------------------0037885189997054301488999--
Q ss_pred HHHHHHHHHHHHHCCEEEEEEECCCC
Q ss_conf 88999999866414237999965777
Q gi|254780799|r 611 ESAVQRLAQMARASGIHVIMATQRPS 636 (806)
Q Consensus 611 e~~i~rlaq~ara~GiHli~aTqrPs 636 (806)
-..+..+-.-.++-+|+||-+|+
T Consensus 121 ---~~l~~~~~~~~~~~~I~~tN~~~ 143 (160)
T 2chq_A 121 ---ALRRTMEMYSKSCRFILSCNYVS 143 (160)
T ss_dssp ---TTGGGTSSSSSSEEEEEEESCGG
T ss_pred ---HHHHHCCCCCCCCEEEEECCCHH
T ss_conf ---87300224554433687228645
No 96
>>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} (A:33-108)
Probab=81.01 E-value=1.1 Score=24.20 Aligned_cols=59 Identities=14% Similarity=0.320 Sum_probs=49.9
Q ss_pred HHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHH-HCCCCCEEEECHHHH
Q ss_conf 99999996598500014222001177899999999977986802-278872673171253
Q gi|254780799|r 745 QAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPA-SSTGKREILISSMEE 803 (806)
Q Consensus 745 ~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~-~g~~~r~vl~~~~~~ 803 (806)
.++.++.+.+..|.+-|=+++.+.=+.+.|+++.||++|+|-.. +....|++++.-.++
T Consensus 9 ~iL~~l~~~~~~t~~~la~~~~~~~~~~s~~i~~L~~~G~i~r~~~~~D~R~~~i~lT~~ 68 (76)
T 2bv6_A 9 LVLTILWDESPVNVKKVVTELALDTGTVSPLLKRXEQVDLIKRERSEVDQREVFIHLTDK 68 (76)
T ss_dssp HHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHH
T ss_conf 999999807994999999997988737999999998589889800689888678888989
No 97
>>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} (A:174-359)
Probab=80.99 E-value=1.3 Score=23.73 Aligned_cols=32 Identities=19% Similarity=0.240 Sum_probs=25.6
Q ss_pred ECCCCCEEEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 41002023553047740679999999999982
Q gi|254780799|r 450 DLARMPHLLIAGTTGSGKSVAINTMILSLLYR 481 (806)
Q Consensus 450 DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk 481 (806)
++.+-+.+.+.|-+|+|||--+|++.-.-..+
T Consensus 3 e~~~~~~I~iiG~~~~GKSSlinal~~~~~~~ 34 (186)
T 1mky_A 3 EITDAIKVAIVGRPNVGKSTLFNAILNKERAL 34 (186)
T ss_dssp CCCSCEEEEEECSTTSSHHHHHHHHHTSTTEE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHCCCCEE
T ss_conf 46787479998999987899999984897168
No 98
>>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} (A:88-282)
Probab=80.69 E-value=1.9 Score=22.55 Aligned_cols=34 Identities=12% Similarity=-0.004 Sum_probs=24.9
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCH
Q ss_conf 1002023553047740679999999999982995
Q gi|254780799|r 451 LARMPHLLIAGTTGSGKSVAINTMILSLLYRMTP 484 (806)
Q Consensus 451 LakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P 484 (806)
+.+-...+|...|||||+++.=..+..++.+..+
T Consensus 38 ~~~~~~~~i~~~tG~GKT~~~~~~~~~~~~~~~~ 71 (195)
T 1rif_A 38 GLVNRRRILNLPTSAGRSLIQALLARYYLENYEG 71 (195)
T ss_dssp HHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSS
T ss_pred HHHCCCCCEEEECCCCHHHHHHHHHHHHHHCCCC
T ss_conf 9855862034540367007999999986523673
No 99
>>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomics, PSI, protein structure initiative; 2.10A {Pseudomonas aeruginosa} (A:35-109)
Probab=80.38 E-value=1.2 Score=23.88 Aligned_cols=59 Identities=10% Similarity=0.242 Sum_probs=49.6
Q ss_pred HHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHH-HCCCCCEEEECHHHH
Q ss_conf 99999996598500014222001177899999999977986802-278872673171253
Q gi|254780799|r 745 QAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPA-SSTGKREILISSMEE 803 (806)
Q Consensus 745 ~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~-~g~~~r~vl~~~~~~ 803 (806)
..+.++.+.+..+.+-|.+.+.+--+-..|.++.||++|+|--. +.+.+|.+++.-.+.
T Consensus 6 ~iL~~l~~~~~~t~~~l~~~~~~~~~~vs~~i~~L~~~g~i~r~~~~~d~R~~~i~lT~~ 65 (75)
T 2fbi_A 6 RVIRILRQQGEMESYQLANQACILRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEK 65 (75)
T ss_dssp HHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHCCHH
T ss_conf 999999986998999999998867888999999999789879853156675122206898
No 100
>>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} (A:)
Probab=80.33 E-value=1.5 Score=23.30 Aligned_cols=27 Identities=33% Similarity=0.543 Sum_probs=22.7
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 002023553047740679999999999
Q gi|254780799|r 452 ARMPHLLIAGTTGSGKSVAINTMILSL 478 (806)
Q Consensus 452 akMPHLLIAGtTGSGKSV~iN~iI~Sl 478 (806)
...|++.+.|.+|+|||--+|.+.-.-
T Consensus 21 ~~~~~I~iiG~~~vGKSSL~n~l~~~~ 47 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 899899999999987999999971987
No 101
>>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} (D:1-191)
Probab=80.21 E-value=2 Score=22.33 Aligned_cols=42 Identities=26% Similarity=0.307 Sum_probs=33.6
Q ss_pred EECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEE
Q ss_conf 541002023553047740679999999999982995784788
Q gi|254780799|r 449 ADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLI 490 (806)
Q Consensus 449 ~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkli 490 (806)
+...+.||+|+=|..|+||+-+.-++--+|.+......+-..
T Consensus 53 i~~~~~~~~Ll~GppG~GKT~~a~ala~~l~~~~~~~~~~~~ 94 (191)
T 1sxj_D 53 LKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILE 94 (191)
T ss_dssp TTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEE
T ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCHHH
T ss_conf 976998739988989999899999999851455544554022
No 102
>>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} (A:104-343)
Probab=80.04 E-value=0.59 Score=26.29 Aligned_cols=79 Identities=13% Similarity=0.158 Sum_probs=45.7
Q ss_pred CEEEEEHHHHHHHHHHCC--CHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHCCCCEE--EEEECCCCCCHHH
Q ss_conf 868776344688887321--005889999998664142379999657775355435541102515--8764586642123
Q gi|254780799|r 590 PYIVVVIDEMADLMMVAR--KDIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRI--SFQVSSKIDSRTI 665 (806)
Q Consensus 590 p~ivviiDElaDlmm~~~--~~ve~~i~rlaq~ara~GiHli~aTqrPsvdvitg~ikan~p~ri--af~v~s~~dSrti 665 (806)
....+++|++.++++... .+.-..+..|.+.|+--+++.++.+|.-....-..-.- ..+... -...+..+|.|..
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~d~~i~ 202 (240)
T 1v5w_A 124 SIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGATMTFQ-ADPKKPIGGHILAHASTTRIS 202 (240)
T ss_dssp TSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC--------------------CCTTTTSSSEEEE
T ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCC-CCCCCCCCHHHHHHHCEEEEE
T ss_conf 3344202323454203367999999999987530147769999235760267543346-886515654788863629999
Q ss_pred CCCC
Q ss_conf 3886
Q gi|254780799|r 666 LGEQ 669 (806)
Q Consensus 666 ld~~ 669 (806)
|...
T Consensus 203 l~~~ 206 (240)
T 1v5w_A 203 LRKG 206 (240)
T ss_dssp EEES
T ss_pred EEEE
T ss_conf 9972
No 103
>>1z05_A Transcriptional regulator, ROK family; structural genomics, PSI, protein structure initiative; 2.00A {Vibrio cholerae o1 biovar eltor str} (A:1-105,A:403-429)
Probab=80.01 E-value=2.7 Score=21.39 Aligned_cols=47 Identities=6% Similarity=0.022 Sum_probs=42.4
Q ss_pred CHHHHHHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 70389999999965985000142220011778999999999779868
Q gi|254780799|r 740 DDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIG 786 (806)
Q Consensus 740 d~l~~~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~ 786 (806)
|+-.....+++.+.+-.|.+-|-+++.+-=.-+.++++.||++|+|-
T Consensus 38 ~~n~~~IL~lL~~~g~~T~~eLA~~lgLS~~TVs~~L~~L~~~GlI~ 84 (132)
T 1z05_A 38 QINAGRVYKLIDQKGPISRIDLSKESELAPASITKITRELIDAHLIH 84 (132)
T ss_dssp HHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
T ss_conf 99999999999985991899999887969999999999999889689
No 104
>>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} (A:)
Probab=79.95 E-value=0.013 Score=38.77 Aligned_cols=53 Identities=17% Similarity=0.123 Sum_probs=40.4
Q ss_pred CCEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHH
Q ss_conf 986877634468888732100588999999866414237999965777535543554
Q gi|254780799|r 589 MPYIVVVIDEMADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIK 645 (806)
Q Consensus 589 lp~ivviiDElaDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPsvdvitg~ik 645 (806)
..--|+|+||..-+ .......+..+....+..++.++..+|+|++...-.+-+
T Consensus 104 ~~~~vlivDE~~~~----~~~~~~~~~~l~~~~~~~~~~li~~~~~~~~~~~~~~~~ 156 (189)
T 2i3b_A 104 PGQRVCVIDEIGKM----ELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKPLALVEE 156 (189)
T ss_dssp SCCCCEEECCCSTT----TTTCSHHHHHHHHHHHCSSCCEEEECCCCCSSCCTTHHH
T ss_pred CCCCEEEECCCCCH----HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHH
T ss_conf 02310255355741----587888999999985479958998278767687999999
No 105
>>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A (A:1-140,A:295-379)
Probab=79.88 E-value=1.3 Score=23.86 Aligned_cols=198 Identities=14% Similarity=0.110 Sum_probs=101.6
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 23553047740679999999999982995784788852310011102770343122334304566899999999999999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEMEERYQ 535 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~iPHLl~pVvTd~~kA~~aL~w~V~EMe~RY~ 535 (806)
+++|.+.||||||..+--.|...+++.. .|-+.+=|= +-++.||.++.+
T Consensus 4 ~~ii~apTGSGKT~~~~~~ii~~~~~~g---~rvLvLaPT----------------------------r~L~~Q~~~~l~ 52 (225)
T 2v6i_A 4 LTVLDLHPGAGKTRRVLPQLVREAVKKR---LRTVILAPT----------------------------RVVASEMYEALR 52 (225)
T ss_dssp EEEEECCTTSCTTTTHHHHHHHHHHHTT---CCEEEEESS----------------------------HHHHHHHHHHTT
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCCC---CEEEEEHHH----------------------------HHHHHHHHHHHH
T ss_conf 7999928987888999999999876279---859999318----------------------------999999999984
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCCHHHHHHH
Q ss_conf 99870899689999999988744786677544677654543222332232346986877634468888732100588999
Q gi|254780799|r 536 KMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVARKDIESAVQ 615 (806)
Q Consensus 536 l~a~~~vRni~~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ivviiDElaDlmm~~~~~ve~~i~ 615 (806)
-+-.... ......- ....+. .+..+..............-.|-+||+||.--.. .+--....
T Consensus 53 ~~~~~~~---~~~~~~~---~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~lIIiDEaH~~~----~~~~~~r~ 114 (225)
T 2v6i_A 53 GEPIRYM---TPAVQSE---RTGNEI--------VDFMCHSTFTMKLLQGVRVPNYNLYIMDEAHFLD----PASVAARG 114 (225)
T ss_dssp TSCEEEC---------------CCCS--------EEEEEHHHHHHHHHHTCCCCCCSEEEEESTTCCS----HHHHHHHH
T ss_pred CCCCCEE---EEEEEEE---CCCCCE--------EEEECCHHHHHHHHCCCCCCCCEEEEECCCCCCC----HHHHHHHH
T ss_conf 5788546---5788860---269973--------9997819999999638765762089960543456----20467878
Q ss_pred HHHHHHHHCCEEEEEEECCCCCCCCC--HHHHHCCCCEEEEEECCCCCCHHHCCCCCHHHHCCCCCEEEECCCCCEEEEE
Q ss_conf 99986641423799996577753554--3554110251587645866421233886457865887547736898325888
Q gi|254780799|r 616 RLAQMARASGIHVIMATQRPSVDVIT--GTIKANFPTRISFQVSSKIDSRTILGEQGAEQLLGQGDMLYMTGGGRVQRIH 693 (806)
Q Consensus 616 rlaq~ara~GiHli~aTqrPsvdvit--g~ikan~p~riaf~v~s~~dSrtild~~gae~Llg~gdml~~~~~~~~~r~~ 693 (806)
-+.+.++--+.++|+-|-.|+-++-. ++. .=..-+.+||+.+- .-|-=-+||-|-..+...+.
T Consensus 115 ~~~~~~~~~~~~iI~lTATp~~~~~a~~~~~-------------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 179 (225)
T 2v6i_A 115 YIETRVSMGDAGAIFMTATPPGTTEANEGHV-------------SWTEARMLLDNVHV--QGGVVAQLYTPEREKTEAYE 179 (225)
T ss_dssp HHHHHHHTTSCEEEEEESSCTTCCCSCTTBH-------------HHHHHHHHHTTCCC--TTSCCCCCCGGGGGGCCCCT
T ss_pred HHHHHHCCCCCEEEEEECCCCCCEEECCCCC-------------CHHHHHHHHHHHHH--HCCCCCCCCCHHHHCCCCCC
T ss_conf 9998515888659998346774046540003-------------03788988876640--02432112573675013799
Q ss_pred ECCC-CHHHHHHHHHHHHHCCCCCC
Q ss_conf 3348-98899999999971289742
Q gi|254780799|r 694 GPFV-SDIEVEKVVSHLKTQGEAKY 717 (806)
Q Consensus 694 g~~v-~~~ev~~v~~~~~~q~~~~y 717 (806)
|-|- .+++=.+.+++++...-|.+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (225)
T 2v6i_A 180 GEFKLKTNQRKVFSELIRTGDLPVW 204 (225)
T ss_dssp TTTCCCHHHHHHHHHHHHTTCCCHH
T ss_pred CEEECCHHHHHHHHHHHHHCCCCHH
T ss_conf 6687468889999998764588437
No 106
>>2gno_A DNA polymerase III, gamma subunit-related protein; TM0771, structural genomics, PSI, protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima MSB8} (A:1-140)
Probab=79.86 E-value=2 Score=22.27 Aligned_cols=30 Identities=13% Similarity=-0.173 Sum_probs=25.7
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHC
Q ss_conf 020235530477406799999999999829
Q gi|254780799|r 453 RMPHLLIAGTTGSGKSVAINTMILSLLYRM 482 (806)
Q Consensus 453 kMPHLLIAGtTGSGKSV~iN~iI~SlLyk~ 482 (806)
.++|+|..|..|+||+...-++--.+.+..
T Consensus 17 ~~~~iLl~GppG~GKT~la~~ia~~~~~~~ 46 (140)
T 2gno_A 17 EGISILINGEDLSYPREVSLELPEYVEKFP 46 (140)
T ss_dssp SSEEEEEECSSSSHHHHHHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCC
T ss_conf 986598889899887999999999873446
No 107
>>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} (A:)
Probab=79.85 E-value=2.1 Score=22.16 Aligned_cols=150 Identities=20% Similarity=0.242 Sum_probs=69.8
Q ss_pred EEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHC-CHH--HE-------------------EEEEECCCHHHHHHCCC
Q ss_conf 785410020235530477406799999999999829-957--84-------------------78885231001110277
Q gi|254780799|r 447 IIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRM-TPA--QC-------------------RLIMIDPKMLELSVYDG 504 (806)
Q Consensus 447 vv~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~-~P~--ev-------------------kliliDPK~vEls~Y~~ 504 (806)
+-.++.+==.+-|.|.+|||||-.++.+ .+. .|. ++ -++-=||-..+-|+++.
T Consensus 21 isl~i~~G~~vaivG~sGsGKSTLl~ll-----~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eN 95 (243)
T 1mv5_A 21 ISFEAQPNSIIAFAGPSGGGKSTIFSLL-----ERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIREN 95 (243)
T ss_dssp EEEEECTTEEEEEECCTTSSHHHHHHHH-----TTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHH
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHHH-----HCCCCCCCCEEEECCEECCCCCHHHHHHCEEEEECCCCCCCCCHHHH
T ss_conf 2899859999999999998199999999-----66877896389999999740169999734599926884365658762
Q ss_pred CHHHHCCCCCCHHHHHHHHHHH-----HHHHHHHHHHHHHCCCCCHHHHH-HHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0343122334304566899999-----99999999999870899689999-99998874478667754467765454322
Q gi|254780799|r 505 IPNLLTPVVTNPQKAVTVLKWL-----VCEMEERYQKMSKIGVRNIDGFN-LKVAQYHNTGKKFNRTVQTGFDRKTGEAI 578 (806)
Q Consensus 505 iPHLl~pVvTd~~kA~~aL~w~-----V~EMe~RY~l~a~~~vRni~~yN-~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (806)
|-.=+.|-.+|- +...++++| +..|...|+..-.-+-.|+.|=. +|+.-|++-
T Consensus 96 i~~g~~~~~~~~-~~~~~~~~~~~~~~i~~l~~~l~t~i~~~g~~LSgGq~Qri~lARal-------------------- 154 (243)
T 1mv5_A 96 LTYGLEGDYTDE-DLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAF-------------------- 154 (243)
T ss_dssp TTSCTTSCSCHH-HHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHH--------------------
T ss_pred CCCCCCCCCCHH-HHHHHHHHHCHHHHHHHCHHHHCCCCCCCCCCCCHHHHHHHHHHHHH--------------------
T ss_conf 023444556889-99999999762756764611104722588898699999999999998--------------------
Q ss_pred CCCCCCCCCCCCEEEEEHHHH-HHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCC
Q ss_conf 233223234698687763446-8888732100588999999866414237999965777
Q gi|254780799|r 579 YETEHFDFQHMPYIVVVIDEM-ADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPS 636 (806)
Q Consensus 579 ~~~~~~~~~~lp~ivviiDEl-aDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPs 636 (806)
-.=|-| ++.||- +-|=-.+.+.+.+.|..+. .|.-.|+.|.|++
T Consensus 155 --------~~~p~i-lllDEpts~LD~~~~~~i~~~l~~~~-----~~~t~i~itH~~~ 199 (243)
T 1mv5_A 155 --------LRNPKI-LMLDEATASLDSESESMVQKALDSLM-----KGRTTLVIAHRLS 199 (243)
T ss_dssp --------HHCCSE-EEEECCSCSSCSSSCCHHHHHHHHHH-----TTSEEEEECCSHH
T ss_pred --------HCCCCE-EEECCCCCCCCHHHHHHHHHHHHHHH-----CCCEEEEEECCHH
T ss_conf --------529989-99647555779889999999999984-----8988999968899
No 108
>>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi} (A:1-138)
Probab=79.79 E-value=1.2 Score=23.99 Aligned_cols=58 Identities=5% Similarity=0.111 Sum_probs=46.4
Q ss_pred HHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHH-HCCCCCEEEECHHH
Q ss_conf 99999996598500014222001177899999999977986802-27887267317125
Q gi|254780799|r 745 QAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPA-SSTGKREILISSME 802 (806)
Q Consensus 745 ~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~-~g~~~r~vl~~~~~ 802 (806)
..+.++...+..|.+-|-+++.+--+-+.|+++.||++|+|--. +..-.|.+++.-.+
T Consensus 57 ~iL~~l~~~~~~t~~ela~~~~~~~~~~s~~v~~L~~~glv~r~~~~~D~R~~~i~lT~ 115 (138)
T 3e6m_A 57 RLLSSLSAYGELTVGQLATLGVXEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTR 115 (138)
T ss_dssp HHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEECCCCCCCEEECCCCH
T ss_conf 99999985699699999999774798882999987418887750478998830011689
No 109
>>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, transcription-coupled DNA repair, ATP-binding, DNA damage, DNA repair; 1.95A {Escherichia coli} PDB: 2b2n_A* (A:1-115,A:266-483)
Probab=79.71 E-value=1.6 Score=23.07 Aligned_cols=52 Identities=19% Similarity=0.241 Sum_probs=29.2
Q ss_pred EECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECC-CHHHHHHCCCCHH
Q ss_conf 5410020235530477406799999999999829957847888523-1001110277034
Q gi|254780799|r 449 ADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDP-KMLELSVYDGIPN 507 (806)
Q Consensus 449 ~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDP-K~vEls~Y~~iPH 507 (806)
-.|.+=-+.|+.|.||||||.+.=-++. +. . -+-+++-| +-+-...|+.+-.
T Consensus 9 ~~~~~~~~~l~~~~tGsGKT~~~~~~~~----~~--~-~~~~~~~p~~~l~~q~~~~~~~ 61 (333)
T 3hjh_A 9 LPVKAGEQRLLGELTGAACATLVAEIAE----RH--A-GPVVLIAPDMQNALRLHDEISQ 61 (333)
T ss_dssp CCCSTTCEEEEECCCTTHHHHHHHHHHH----HS--S-SCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEECCCCCHHHHHHHHHHHH----HH--C-CCEEEEECCHHHHHHHHHHHHH
T ss_conf 7789998688658773699999999999----75--8-9999990899999999999984
No 110
>>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris} (A:1-134)
Probab=79.45 E-value=1.3 Score=23.73 Aligned_cols=58 Identities=14% Similarity=0.182 Sum_probs=48.9
Q ss_pred HHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHH-HCCCCCEEEECHHH
Q ss_conf 99999996598500014222001177899999999977986802-27887267317125
Q gi|254780799|r 745 QAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPA-SSTGKREILISSME 802 (806)
Q Consensus 745 ~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~-~g~~~r~vl~~~~~ 802 (806)
.++..+-..+..+.+-|.+++.+--+-+.|+++.||++|+|--. +.+..|.+++.-.+
T Consensus 53 ~iL~~l~~~~~~t~~~la~~~~~~~~~vsr~v~~Le~~Glv~r~~~~~D~R~~~v~lT~ 111 (134)
T 2fa5_A 53 RVITILALYPGSSASEVSDRTAXDKVAVSRAVARLLERGFIRRETHGDDRRRSXLALSP 111 (134)
T ss_dssp HHHHHHHHSTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---------CCCEECH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHCCH
T ss_conf 99999985899799999999884888999999998318825330567664112554059
No 111
>>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} (A:)
Probab=79.29 E-value=2.2 Score=22.07 Aligned_cols=54 Identities=20% Similarity=0.195 Sum_probs=41.9
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCC
Q ss_conf 002023553047740679999999999982995784788852310011102770
Q gi|254780799|r 452 ARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGI 505 (806)
Q Consensus 452 akMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~i 505 (806)
.+=++.+|.|.+|+|||--+|.+.-.=.-...|....-..++.+..++..++..
T Consensus 46 ~~~~ki~ivG~~~vGKTsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFP 99 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CCCCTTCSEEEET
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEEEEEECCEEEEEECCC
T ss_conf 656289998989997488999986396355677732079998588589962378
No 112
>>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A (A:1-159,A:317-397)
Probab=79.08 E-value=0.64 Score=26.05 Aligned_cols=207 Identities=16% Similarity=0.139 Sum_probs=99.4
Q ss_pred EEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 78541002023553047740679999999999982995784788852310011102770343122334304566899999
Q gi|254780799|r 447 IIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWL 526 (806)
Q Consensus 447 vv~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~iPHLl~pVvTd~~kA~~aL~w~ 526 (806)
+..-|.+--..||++.||||||...=..|+..+++. ..|-+.+-|.++ +
T Consensus 14 i~~~l~~~~~~li~~pTGsGKT~~~l~~i~~~~~~~---~~rvLiLaPtr~----------------------------L 62 (240)
T 2z83_A 14 SPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ---RLRTAVLAPTRV----------------------------V 62 (240)
T ss_dssp -CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT---TCCEEEEECSHH----------------------------H
T ss_pred HHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHC---CCEEEEEHHHHH----------------------------H
T ss_conf 899996299399996899858899999999987727---983999867999----------------------------9
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHC
Q ss_conf 99999999999870899689999999988744786677544677654543222332232346986877634468888732
Q gi|254780799|r 527 VCEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVA 606 (806)
Q Consensus 527 V~EMe~RY~l~a~~~vRni~~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ivviiDElaDlmm~~ 606 (806)
++||.++. ...+.+....-.. ....+..+. +..++.............=-|=+||+||.- .|--.
T Consensus 63 ~~q~~~~l---~~~~~~~~~~~~~----~~~~~~~ii-------~~t~~~~~~~~~~~~~~~~~~~lIIiDEaH-~~~~~ 127 (240)
T 2z83_A 63 AAEMAEAL---RGLPVRYQTSAVQ----REHQGNEIV-------DVMCHATLTHRLMSPNRVPNYNLFVMDEAH-FTDPA 127 (240)
T ss_dssp HHHHHHHT---TTSCEEECC------------CCCSE-------EEEEHHHHHHHHHSCC-CCCCSEEEESSTT-CCSHH
T ss_pred HHHHHHHH---CCCCCCEEEEEEE----ECCCCCCCE-------EEECCHHHHHHHHCCCCCCCEEEEEECHHH-HHCCC
T ss_conf 99999996---7998745523488----035799888-------996958999998478663560399961134-42234
Q ss_pred CCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCC--CHHHHHCCCCEEEEEECCCCCCHHHCCCCCHHHHCCCCCEEEEC
Q ss_conf 1005889999998664142379999657775355--43554110251587645866421233886457865887547736
Q gi|254780799|r 607 RKDIESAVQRLAQMARASGIHVIMATQRPSVDVI--TGTIKANFPTRISFQVSSKIDSRTILGEQGAEQLLGQGDMLYMT 684 (806)
Q Consensus 607 ~~~ve~~i~rlaq~ara~GiHli~aTqrPsvdvi--tg~ikan~p~riaf~v~s~~dSrtild~~gae~Llg~gdml~~~ 684 (806)
+ -....-+.++++....|+|+-|=.|.-.+= .++. .=..-+.+||+.+- .-|-=-+||-|
T Consensus 128 s---~~~r~~~~~~~~~~~~~~I~lTATP~~~~~~~~~~~-------------~~~~~~~~~~~~~~--~~~~~~~~~~~ 189 (240)
T 2z83_A 128 S---IAARGYIATKVELGEAAAIFMTATPPGTTDPDSNLA-------------HWTEAKIMLDNIHM--PNGLVAQLYGP 189 (240)
T ss_dssp H---HHHHHHHHHHHHTTSCEEEEECSSCTTCCCSCTTBH-------------HHHHHHHHHHTSCC--TTSCCCCCCGG
T ss_pred C---HHHHHHHHHHHCCCCCEEEEEECCCCCEEEECCCCC-------------CCCHHHHHHHHCCC--CCCCCCCCCCC
T ss_conf 2---699999999735887719994169862378743330-------------00427778753656--23332000375
Q ss_pred CCCCEEEEEECCC-CHHHHHHHHHHHHHCCCCCC
Q ss_conf 8983258883348-98899999999971289742
Q gi|254780799|r 685 GGGRVQRIHGPFV-SDIEVEKVVSHLKTQGEAKY 717 (806)
Q Consensus 685 ~~~~~~r~~g~~v-~~~ev~~v~~~~~~q~~~~y 717 (806)
-..+...+.|-|- .+++=.+.+++++...-|.+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (240)
T 2z83_A 190 EREKAFTMDGEYRLRGEEKKNFLELLRTADLPVW 223 (240)
T ss_dssp GGGGCCCCTTTTCCCHHHHHHHHHHHHTSCCCHH
T ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCHH
T ss_conf 7773669860233102146789999863589847
No 113
>>1wf3_A GTP-binding protein; GTPase, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus HB8} (A:1-179)
Probab=79.02 E-value=1.6 Score=23.05 Aligned_cols=30 Identities=23% Similarity=0.286 Sum_probs=24.2
Q ss_pred EECCCCCEEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 541002023553047740679999999999
Q gi|254780799|r 449 ADLARMPHLLIAGTTGSGKSVAINTMILSL 478 (806)
Q Consensus 449 ~DLakMPHLLIAGtTGSGKSV~iN~iI~Sl 478 (806)
++-.+-|.+.|.|-+|+|||--+|++.-.-
T Consensus 2 ~~~~~~~~i~ivG~~nvGKSsLin~l~~~~ 31 (179)
T 1wf3_A 2 AEKTYSGFVAIVGKPNVGKSTLLNNLLGVK 31 (179)
T ss_dssp -CCCEEEEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 866636689999799987999999996898
No 114
>>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A (A:1-212,A:297-323)
Probab=79.00 E-value=1.5 Score=23.37 Aligned_cols=42 Identities=24% Similarity=0.472 Sum_probs=27.9
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCCHHH
Q ss_conf 23553047740679999999999982995784788852310011102770343
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNL 508 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~iPHL 508 (806)
=+.|.|.||||||---+.+.-. . ...+|-.|.- .+|.++||.
T Consensus 7 iivI~GpTGsGKt~La~~La~~----~---~~~iis~Ds~----qvY~~l~it 48 (239)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADA----L---PCELISVDSA----LIYRGMDIG 48 (239)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH----S---CEEEEEECTT----TTBTTCCTT
T ss_pred EEEEECCCCCCHHHHHHHHHHH----C---CCEEEEEEHH----HHCCCCCEE
T ss_conf 8999897841799999999998----7---9979940258----753999668
No 115
>>2nyx_A Probable transcriptional regulatory protein, RV1404; alpha/beta, structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium tuberculosis H37RV} (A:43-106)
Probab=78.94 E-value=3.5 Score=20.53 Aligned_cols=55 Identities=15% Similarity=0.294 Sum_probs=47.1
Q ss_pred HHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHH-HCCCCCEEEEC
Q ss_conf 99999996598500014222001177899999999977986802-27887267317
Q gi|254780799|r 745 QAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPA-SSTGKREILIS 799 (806)
Q Consensus 745 ~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~-~g~~~r~vl~~ 799 (806)
.+..++...+..|.|-|-+++.+-=....|+++.||++|+|-.. +..-.|.+.+.
T Consensus 7 ~vL~~l~~~~~~t~~ela~~~~~~~~t~s~~i~~L~~~glI~r~~~~~D~R~~~l~ 62 (64)
T 2nyx_A 7 RTLVILSNHGPINLATLATLLGVQPSATGRXVDRLVGAELIDRLPHPTSRRELLAA 62 (64)
T ss_dssp HHHHHHHHHCSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEE
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCC
T ss_conf 99999985799799999999888787779999735018643565324555300005
No 116
>>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} (A:1-168)
Probab=78.92 E-value=2.4 Score=21.77 Aligned_cols=33 Identities=36% Similarity=0.485 Sum_probs=27.6
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 100202355304774067999999999998299
Q gi|254780799|r 451 LARMPHLLIAGTTGSGKSVAINTMILSLLYRMT 483 (806)
Q Consensus 451 LakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~ 483 (806)
-.+.||+|..|-.|+||+.|..++...+-+...
T Consensus 43 ~~~~~~~Ll~GppG~GKT~~a~~ia~~~~~~~~ 75 (168)
T 1iqp_A 43 TGSMPHLLFAGPPGVGKTTAALALARELFGENW 75 (168)
T ss_dssp HTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 799987988897999999999999999764024
No 117
>>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* (A:)
Probab=78.70 E-value=2.4 Score=21.73 Aligned_cols=107 Identities=12% Similarity=0.050 Sum_probs=60.5
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 20235530477406799999999999829957847888523100111027703431223343045668999999999999
Q gi|254780799|r 454 MPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEMEER 533 (806)
Q Consensus 454 MPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~iPHLl~pVvTd~~kA~~aL~w~V~EMe~R 533 (806)
=.|+|+-|..|+|||-..++|--.+-.+..+-.. +. .. .-.+.+.+..
T Consensus 38 ~~~ilL~GppGtGKT~la~aia~~~~~~~~~~~~--------------~~-----------~~-------~~~~~~~~~~ 85 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGY--------------FF-----------DT-------KDLIFRLKHL 85 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCC--------------EE-----------EH-------HHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEE--------------EE-----------EC-------CCHHHHHHHH
T ss_conf 9879999989998999999999987760595599--------------97-----------23-------3166543356
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCCHHHHH
Q ss_conf 99998708996899999999887447866775446776545432223322323469868776344688887321005889
Q gi|254780799|r 534 YQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVARKDIESA 613 (806)
Q Consensus 534 Y~l~a~~~vRni~~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ivviiDElaDlmm~~~~~ve~~ 613 (806)
..... .. -+. ..+......++..||..+. .......
T Consensus 86 ~~~~~--~~-----~~~---------------------------------~~~~~~~~~~l~~~~~~~~----~~~~~~~ 121 (180)
T 3ec2_A 86 XDEGK--DT-----KFL---------------------------------KTVLNSPVLVLDDLGSERL----SDWQREL 121 (180)
T ss_dssp HHHTC--CS-----HHH---------------------------------HHHHTCSEEEEETCSSSCC----CHHHHHH
T ss_pred HHCCC--HH-----HHH---------------------------------HHCCCCCEEEECCCCCCCC----CHHHHHH
T ss_conf 51150--79-----999---------------------------------8616787899844256679----9999999
Q ss_pred HHHHHHHHHHCCEEEEEEECCCC
Q ss_conf 99999866414237999965777
Q gi|254780799|r 614 VQRLAQMARASGIHVIMATQRPS 636 (806)
Q Consensus 614 i~rlaq~ara~GiHli~aTqrPs 636 (806)
+-++=+.-...|.-+|++|.+|.
T Consensus 122 l~~~l~~~~~~~~~~i~ttn~~~ 144 (180)
T 3ec2_A 122 ISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHHHHHHHHHTTCEEEEECCCCS
T ss_pred HHHHHHHHHHCCCEEEEECCCCH
T ss_conf 99999999987996999878996
No 118
>>3cjn_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3} (A:48-125)
Probab=78.32 E-value=2.4 Score=21.74 Aligned_cols=59 Identities=8% Similarity=0.139 Sum_probs=48.7
Q ss_pred HHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHC-CCCCEEEECHHHH
Q ss_conf 9999999659850001422200117789999999997798680227-8872673171253
Q gi|254780799|r 745 QAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPASS-TGKREILISSMEE 803 (806)
Q Consensus 745 ~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~~g-~~~r~vl~~~~~~ 803 (806)
..+..+.+.+..|.+-|-+++.+-=.-+.|+++.||++|+|--... .-.|.+++.-.++
T Consensus 9 ~iL~~l~~~g~~t~~ela~~~~~~~~~vs~~i~~L~~~g~i~~~~~~~D~R~~~i~lT~~ 68 (78)
T 3cjn_A 9 RALAILSAKDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPA 68 (78)
T ss_dssp HHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHEEECCCCCCCCHHHCCCHH
T ss_conf 999999847998999999997888332458899999988540110577775301004677
No 119
>>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens} (B:)
Probab=77.92 E-value=1.8 Score=22.70 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=16.2
Q ss_pred EEEEECCCCHHHHHHHHHHHHH
Q ss_conf 3553047740679999999999
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMILSL 478 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~Sl 478 (806)
..|.|..|||||-..+.+.-.+
T Consensus 14 I~i~G~~GsGKsT~a~~La~~l 35 (202)
T 3ch4_B 14 LLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp EEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9998989989999999999854
No 120
>>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori 26695} PDB: 1zui_A* (A:)
Probab=77.82 E-value=1.6 Score=22.97 Aligned_cols=24 Identities=38% Similarity=0.531 Sum_probs=19.6
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 002023553047740679999999
Q gi|254780799|r 452 ARMPHLLIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 452 akMPHLLIAGtTGSGKSV~iN~iI 475 (806)
.+|+.++|.|..|||||-.-..+-
T Consensus 5 ~~~~~I~i~G~~GsGKtT~a~~La 28 (168)
T 1zuh_A 5 HHMQHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp ---CEEEEESCTTSSHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 367658999999998999999999
No 121
>>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} (C:1-168)
Probab=77.67 E-value=2.5 Score=21.66 Aligned_cols=31 Identities=29% Similarity=0.580 Sum_probs=25.1
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHC
Q ss_conf 0020235530477406799999999999829
Q gi|254780799|r 452 ARMPHLLIAGTTGSGKSVAINTMILSLLYRM 482 (806)
Q Consensus 452 akMPHLLIAGtTGSGKSV~iN~iI~SlLyk~ 482 (806)
.+.||+|.-|-.|+||+-+.-++.-.+....
T Consensus 44 ~~~~~~ll~GppG~GKt~~a~~~a~~l~~~~ 74 (168)
T 1sxj_C 44 GKLPHLLFYGPPGTGKTSTIVALAREIYGKN 74 (168)
T ss_dssp TCCCCEEEECSSSSSHHHHHHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 9998699889799999999999998740456
No 122
>>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} (A:29-94)
Probab=77.59 E-value=2.9 Score=21.12 Aligned_cols=55 Identities=9% Similarity=0.266 Sum_probs=45.8
Q ss_pred HHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHC-CCCCEEEEC
Q ss_conf 9999999659850001422200117789999999997798680227-887267317
Q gi|254780799|r 745 QAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPASS-TGKREILIS 799 (806)
Q Consensus 745 ~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~~g-~~~r~vl~~ 799 (806)
.++..+.+.+..|.|-|.+.+.+-=+.+.|+++.||++|.|--... .-.|.+.+.
T Consensus 9 ~vL~~l~~~~~~t~~~la~~~~~s~~~~s~~i~~L~~~Glv~r~~~~~D~R~~~i~ 64 (66)
T 2a61_A 9 DILQKIYFEGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDPADRRAYFLV 64 (66)
T ss_dssp HHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEE
T ss_pred HHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCEEEEE
T ss_conf 99999987699899999988298988999999999724686642347898857878
No 123
>>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* (A:)
Probab=77.56 E-value=1.2 Score=24.11 Aligned_cols=19 Identities=42% Similarity=0.676 Sum_probs=16.2
Q ss_pred CCCCEEEEEECCCCHHHHH
Q ss_conf 0020235530477406799
Q gi|254780799|r 452 ARMPHLLIAGTTGSGKSVA 470 (806)
Q Consensus 452 akMPHLLIAGtTGSGKSV~ 470 (806)
.||++.++-|..|||||.-
T Consensus 5 ~k~~~I~l~G~~GsGKSTl 23 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTV 23 (227)
T ss_dssp --CCEEEEEECTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
T ss_conf 4515399989999987999
No 124
>>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, transit peptide, disease mutation, nucleotide-binding, ATP-binding; HET: GDP 2PE; 2.64A {Homo sapiens} (A:1-262)
Probab=77.54 E-value=3.2 Score=20.77 Aligned_cols=43 Identities=23% Similarity=0.286 Sum_probs=33.1
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHH
Q ss_conf 202355304774067999999999998299578478885231001
Q gi|254780799|r 454 MPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLE 498 (806)
Q Consensus 454 MPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vE 498 (806)
-|=.++.|-|||||+--++-+...+..+ ...|-+|-.|+=+..
T Consensus 74 ~~v~~l~G~~GaGKTT~l~kla~~l~~~--~~kv~vi~~D~~r~~ 116 (262)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTER--GHKLSVLAVDPSSCT 116 (262)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEECCC----
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHC--CCEEEEEECCCCCCC
T ss_conf 2178630799888999999999999858--972889855898753
No 125
>>2vbc_A Dengue 4 NS3 FULL-length protein; transmembrane, RNA replication, NS2B-NS3 protease; 3.15A {Dengue virus type 4} (A:176-323,A:482-562)
Probab=77.50 E-value=1.2 Score=24.10 Aligned_cols=190 Identities=15% Similarity=0.153 Sum_probs=105.6
Q ss_pred EECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 54100202355304774067999999999998299578478885231001110277034312233430456689999999
Q gi|254780799|r 449 ADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVC 528 (806)
Q Consensus 449 ~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~iPHLl~pVvTd~~kA~~aL~w~V~ 528 (806)
.-|.+=...+|.+.|||||+..+--.|...+.+.. .|-+.+=|-+ -+++
T Consensus 6 ~~l~~~~~~iv~apTGsGKT~~~l~~i~~~~~~~~---~rvLiLaPtr----------------------------~L~~ 54 (229)
T 2vbc_A 6 DIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRR---LRTLILAPTR----------------------------VVAA 54 (229)
T ss_dssp CCCSTTCEEEECCCTTTCCTTTHHHHHHHHHHHTT---CCEEEEESSH----------------------------HHHH
T ss_pred CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCC---CEEEEEHHHH----------------------------HHHH
T ss_conf 10247974999958987998999999999725579---9999985899----------------------------9999
Q ss_pred HHHHHHHHHH-HCC---------------CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 9999999998-708---------------996899999999887447866775446776545432223322323469868
Q gi|254780799|r 529 EMEERYQKMS-KIG---------------VRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYI 592 (806)
Q Consensus 529 EMe~RY~l~a-~~~---------------vRni~~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~i 592 (806)
||.+|++-+. ... +-....+...... ....-=|-
T Consensus 55 q~~e~l~~~~~~~~~~~~~~~~~~~~~i~v~t~~~~~~~l~~------------------------------~~~~~~~~ 104 (229)
T 2vbc_A 55 EMEEALRGLPIRYQTPAVKSDHTGREIVDLMCHATFTTRLLS------------------------------STRVPNYN 104 (229)
T ss_dssp HHHHHTTTSCEEECCTTCSCCCCCSSCEEEEEHHHHHHHHHH------------------------------CSCCCCCS
T ss_pred HHHHHHCCCCCCEEEEEEECCCCCCCEEEEECCHHHHHHHHC------------------------------CCCCCCCC
T ss_conf 999996475774588998447688745999794699999717------------------------------87547986
Q ss_pred EEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHCCCCEEEEEECCCCCCHHHCCCCCHH
Q ss_conf 77634468888732100588999999866414237999965777535543554110251587645866421233886457
Q gi|254780799|r 593 VVVIDEMADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRISFQVSSKIDSRTILGEQGAE 672 (806)
Q Consensus 593 vviiDElaDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPsvdvitg~ikan~p~riaf~v~s~~dSrtild~~gae 672 (806)
+||+||.-.+- .+--.....+..+++.....+|+-|=.|.-+.- ++-. ..=..-+.+||+.+--
T Consensus 105 lIIiDEaH~~~----~~~~~~~~~~~~~~~~~~~~vI~mSATPp~~~~--------~~~~----~~~~~~~~~~~~~~~~ 168 (229)
T 2vbc_A 105 LIVMDEAHFTD----PCSVAARGYISTRVEMGEAAAIFMTATPPGSTD--------DEDH----AHWTEAKMLLDNIYTP 168 (229)
T ss_dssp EEEEESTTCCS----HHHHHHHHHHHHHHHHTSCEEEEECSSCTTCCC--------CTTB----HHHHHHHHHHTTSCCT
T ss_pred EEEEECCCCCC----CCHHHHHHHHHHHCCCCCCEEEEEECCCCCCEE--------HHHH----CCHHHHHHHHHHHCCC
T ss_conf 89991897558----224667899997350567329996068986478--------1553----5525877655321153
Q ss_pred HHCCCCCEEEECCCCCEEEEEECCC-CHHHHHHHHHHHHHCCCCCC
Q ss_conf 8658875477368983258883348-98899999999971289742
Q gi|254780799|r 673 QLLGQGDMLYMTGGGRVQRIHGPFV-SDIEVEKVVSHLKTQGEAKY 717 (806)
Q Consensus 673 ~Llg~gdml~~~~~~~~~r~~g~~v-~~~ev~~v~~~~~~q~~~~y 717 (806)
-|-=-+||-|-..+...+.|-|- .+++=.+.+++++...-|.+
T Consensus 169 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (229)
T 2vbc_A 169 --EGIIPTLFGPEREKTQAIDGEFRLRGEQRKTFVELMRRGDLPVW 212 (229)
T ss_dssp --TCCCCCCCGGGGGGCCSCTTTTCCCTTHHHHHHHHHHTSCCCHH
T ss_pred --CCCCCCCCCHHHHHCCCCCCCEEECHHHHHHHHHHHHHCCCCHH
T ss_conf --56653234505663035787355031457889998762555214
No 126
>>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR), structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str} (A:1-131)
Probab=77.46 E-value=3.6 Score=20.40 Aligned_cols=58 Identities=14% Similarity=0.250 Sum_probs=45.5
Q ss_pred HHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCH---HHCCCCCEEEE--CHHH
Q ss_conf 9999999659850001422200117789999999997798680---22788726731--7125
Q gi|254780799|r 745 QAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGP---ASSTGKREILI--SSME 802 (806)
Q Consensus 745 ~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~---~~g~~~r~vl~--~~~~ 802 (806)
..+..+.+.+..|.+-|-+++.+-=+...|+++.||++|.|-. ++-.-.|.+++ +++.
T Consensus 45 ~iL~~i~~~~~~t~~~la~~l~~~~s~vs~~i~~L~~~glV~r~~~~d~~D~R~~~i~LT~~G 107 (131)
T 2qww_A 45 AXINVIYSTPGISVADLTKRLIITGSSAAANVDGLISLGLVVKLNKTIPNDSXDLTLKLSKKG 107 (131)
T ss_dssp HHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHH
T ss_conf 999999987998999999997864466626657999877865232023566652242567789
No 127
>>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* (A:706-942,A:1014-1055)
Probab=77.24 E-value=4.7 Score=19.53 Aligned_cols=115 Identities=23% Similarity=0.202 Sum_probs=66.0
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECC------CHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 35530477406799999999999829957847888523------100111027703431223343045668999999999
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDP------KMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEM 530 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDP------K~vEls~Y~~iPHLl~pVvTd~~kA~~aL~w~V~EM 530 (806)
.+|+|..|||||-.-=.++.+.+ -+.-+-+.||- .+.+ ..-.+..+++..-+.+...+...+...+.
T Consensus 30 teI~G~pGsGKT~lal~~~~~~~----~~g~~viyIDtE~~~~~~r~~-~lg~~~d~l~~~~~~~~~~~~~~~~~l~~-- 102 (279)
T 3cmw_A 30 VEIYGPESSGKTTLTLQVIAAAQ----REGKTCAFIDAEHALDPIYAR-KLGVDIDNLLCSQPDTGEQALEICDALAR-- 102 (279)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH----HTTCCEEEECTTSCCCHHHHH-HTTCCGGGCEEECCSSHHHHHHHHHHHHH--
T ss_pred EEEECCCCCCCEEEEHHHHHHHH----HCCCEEEEECCCCCCCHHHHH-HCCCCCCCEEECCCCHHHHHHHHHHHHHC--
T ss_conf 88537887772677588768777----316634554033342877886-52776302043264377789998898731--
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHH-----
Q ss_conf 999999987089968999999998874478667754467765454322233223234698687763446888873-----
Q gi|254780799|r 531 EERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMV----- 605 (806)
Q Consensus 531 e~RY~l~a~~~vRni~~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ivviiDElaDlmm~----- 605 (806)
..+..+||||-++-|.-.
T Consensus 103 ---------------------------------------------------------~~~~~liVIDSi~al~~~~e~~~ 125 (279)
T 3cmw_A 103 ---------------------------------------------------------SGAVDVIVVDSVAALTPKAEIEG 125 (279)
T ss_dssp ---------------------------------------------------------HTCCSEEEESCSTTCCCHHHHHS
T ss_pred ---------------------------------------------------------CCCCCEEEECCHHHCCCCCCCCC
T ss_conf ---------------------------------------------------------58603288554443242455555
Q ss_pred ---------CCCHHHHHHHHHHHHHHHCCEEEEEEECCC
Q ss_conf ---------210058899999986641423799996577
Q gi|254780799|r 606 ---------ARKDIESAVQRLAQMARASGIHVIMATQRP 635 (806)
Q Consensus 606 ---------~~~~ve~~i~rlaq~ara~GiHli~aTqrP 635 (806)
..+.+-....+|...|+-.++-+|+-.|--
T Consensus 126 ~~~~~~~~~~ar~~~~~~~~L~~la~~~~~~vi~tNQ~~ 164 (279)
T 3cmw_A 126 EIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR 164 (279)
T ss_dssp CTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEE
T ss_pred CCHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCC
T ss_conf 202230554330456788998644035661688742456
No 128
>>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} (A:1-141)
Probab=77.14 E-value=3.9 Score=20.13 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=29.3
Q ss_pred HHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 965985000142220011778999999999779868
Q gi|254780799|r 751 LRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIG 786 (806)
Q Consensus 751 ~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~ 786 (806)
-+.+..|.|-|+.+|.+-.....|+++.||++|.|-
T Consensus 20 ~~~~~v~~~eLA~~l~vs~~tvt~~l~kLe~~glv~ 55 (141)
T 1fx7_A 20 EEGVTPLRARIAERLDQSGPTVSQTVSRMERDGLLR 55 (141)
T ss_dssp HHTSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCEE
T ss_conf 449975199999997899168999999998799889
No 129
>>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae} (A:410-583)
Probab=77.14 E-value=0.5 Score=26.87 Aligned_cols=64 Identities=11% Similarity=0.089 Sum_probs=50.8
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCCCC-CEEEECHH
Q ss_conf 77703899999999659850001422200117789999999997798680227887-26731712
Q gi|254780799|r 738 VADDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPASSTGK-REILISSM 801 (806)
Q Consensus 738 ~~d~l~~~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~~g~~~-r~vl~~~~ 801 (806)
..++.....++++.+.+..+..-+++.+.|..+.|.|.+..|+++|+|-...+.+. |=+|...+
T Consensus 104 ~~~~~~~~i~~~l~~~~~it~~ei~~~~gis~~ti~r~L~~L~~~G~i~~~g~gr~~~Y~l~~~~ 168 (174)
T 3lmm_A 104 DQAELTNAAXLWLSEVGDLATSDLXAXCGVSRGTAKACVDGLVDEERVVAVGGGRSRRYRLVELE 168 (174)
T ss_dssp -----------------------------------------------------------------
T ss_pred CHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCEEEEEEEEC
T ss_conf 53679999999999779939999999979499999999999998897798567886189997511
No 130
>>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} (A:1-219)
Probab=76.93 E-value=1.6 Score=23.12 Aligned_cols=50 Identities=20% Similarity=0.266 Sum_probs=40.3
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCC
Q ss_conf 23553047740679999999999982995784788852310011102770
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGI 505 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~i 505 (806)
|+++..-|||||..|-.-=+++-+.+..+.-..++++-.+-+-..+|.-.
T Consensus 47 dvi~~a~TGsGKTlayllpil~~i~~~~~~~~al~l~PtreL~~q~~~~~ 96 (219)
T 1xti_A 47 DVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEY 96 (219)
T ss_dssp CEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHH
T ss_pred CEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHH
T ss_conf 88998999836999999999997440478724899935277666779999
No 131
>>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* (A:)
Probab=76.93 E-value=2.1 Score=22.13 Aligned_cols=33 Identities=21% Similarity=0.265 Sum_probs=25.2
Q ss_pred CEEEEECCCCCEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 667854100202355304774067999999999
Q gi|254780799|r 445 KPIIADLARMPHLLIAGTTGSGKSVAINTMILS 477 (806)
Q Consensus 445 ~pvv~DLakMPHLLIAGtTGSGKSV~iN~iI~S 477 (806)
.+--..-.+.+++++.|..|+|||-.+|.++-.
T Consensus 11 ~~~~~~~~~~~ki~lvG~~~vGKTsLi~~~~~~ 43 (196)
T 3llu_A 11 RENLYFQGSKPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp ---------CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 431002688319999998999999999999738
No 132
>>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} (A:1-54)
Probab=76.87 E-value=3.9 Score=20.19 Aligned_cols=49 Identities=27% Similarity=0.449 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHH
Q ss_conf 7038999999996598500014222001177899999999977986802
Q gi|254780799|r 740 DDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPA 788 (806)
Q Consensus 740 d~l~~~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~ 788 (806)
|++-.+-+.+..+..+.|.+-|-+++.+-=.-..+-+..||++|+|-.+
T Consensus 3 d~~D~~Il~~L~~n~r~s~~~la~~lgiS~~tv~~ri~kLe~~GvI~~y 51 (54)
T 1i1g_A 3 DERDKIILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEKGIIEGY 51 (54)
T ss_dssp CSHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCC
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf 8899999999998589899999999890999999999998606961241
No 133
>>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* (A:1-181)
Probab=76.54 E-value=2.6 Score=21.54 Aligned_cols=36 Identities=31% Similarity=0.401 Sum_probs=28.9
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCH-HHEEEEEECCCH
Q ss_conf 23553047740679999999999982995-784788852310
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTP-AQCRLIMIDPKM 496 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P-~evkliliDPK~ 496 (806)
|+||.|-+|+||+. +...+++..+ .+=.|+.+|.-.
T Consensus 31 pVli~Ge~GtGK~~-----lA~~ih~~~~~~~~~fi~i~c~~ 67 (181)
T 2bjv_A 31 PVLIIGERGTGKEL-----IASRLHYLSSRWQGPFISLNCAA 67 (181)
T ss_dssp CEEEECCTTSCHHH-----HHHHHHHTSTTTTSCEEEEEGGG
T ss_pred CEEEECCCCCCHHH-----HHHHHHHHHHCCCCCCCCCCHHH
T ss_conf 68998989978999-----99999996003578532234034
No 134
>>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A (A:129-302)
Probab=76.53 E-value=1.1 Score=24.33 Aligned_cols=36 Identities=22% Similarity=0.456 Sum_probs=31.3
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCH
Q ss_conf 23553047740679999999999982995784788852310
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKM 496 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~ 496 (806)
|+||-|-||+||+ ++.-.++..++.+-.||.||--.
T Consensus 26 pVlI~Ge~GtGK~-----~~A~~iH~~s~r~~~fi~i~c~~ 61 (174)
T 3dzd_A 26 PVLITGESGTGKE-----IVARLIHRYSGRKGAFVDLNCAS 61 (174)
T ss_dssp CEEEECCTTSSHH-----HHHHHHHHHHCCCSCEEEEESSS
T ss_pred CEEEECCCCCCHH-----HHHHHHHHHCCCCCCCEEEECCC
T ss_conf 5899889985889-----99999997178889982775688
No 135
>>1z91_A Organic hydroperoxide resistance transcriptional regulator; OHRR, MARR family, bacterial transcription factor, DNA binding protein; 2.50A {Bacillus subtilis} (A:34-111)
Probab=76.52 E-value=2.5 Score=21.65 Aligned_cols=58 Identities=21% Similarity=0.350 Sum_probs=47.2
Q ss_pred HHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHH-HCCCCCEEEECHHH
Q ss_conf 99999996598500014222001177899999999977986802-27887267317125
Q gi|254780799|r 745 QAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPA-SSTGKREILISSME 802 (806)
Q Consensus 745 ~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~-~g~~~r~vl~~~~~ 802 (806)
.++.++...+-.|.+-|-+++.+-=.-+.|+++.||++|+|--. +....|.+++.-.+
T Consensus 11 ~iL~~l~~~~~~t~~~la~~~~~~~~~~s~~i~~L~~~G~I~r~~~~~D~R~~~i~lT~ 69 (78)
T 1z91_A 11 LALLLLWEHETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTE 69 (78)
T ss_dssp HHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEECH
T ss_conf 99999885899999999999796876688999999978997861388888820347898
No 136
>>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} (A:168-353)
Probab=76.50 E-value=2.1 Score=22.11 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=22.3
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 00202355304774067999999999
Q gi|254780799|r 452 ARMPHLLIAGTTGSGKSVAINTMILS 477 (806)
Q Consensus 452 akMPHLLIAGtTGSGKSV~iN~iI~S 477 (806)
.+-+++.+-|-+|+|||--+|++.-+
T Consensus 6 ~~~~~v~iiG~~~vGKSsLin~l~~~ 31 (186)
T 2hjg_A 6 EEVIQFCLIGRPNVGKSSLVNAXLGE 31 (186)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHCCC
T ss_conf 66617999879998889988876189
No 137
>>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} (A:1-121,A:185-308)
Probab=76.46 E-value=3.3 Score=20.67 Aligned_cols=66 Identities=32% Similarity=0.474 Sum_probs=41.5
Q ss_pred HHHCCCCCHHHCCCCCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCH--HHEEEEEEC--CCHHHHHHC
Q ss_conf 4302210002104566666678541002023553047740679999999999982995--784788852--310011102
Q gi|254780799|r 427 FEKNQCDLAINLGKSIEGKPIIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTP--AQCRLIMID--PKMLELSVY 502 (806)
Q Consensus 427 f~~s~~~L~iaLGKdI~G~pvv~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P--~evkliliD--PK~vEls~Y 502 (806)
++.-.....-.||+...+.|+|.- |||.||.|||--.- ++..|+...| ..|-||=-| ||.| +-
T Consensus 61 ~~~~~~~~~~fL~~~~~~~PfiIg--------i~GsvaVGKSTtar--~L~~ll~~~~~~~~V~LvTTDgF~dIL---IV 127 (245)
T 1sq5_A 61 NLRRQAVLEQFLGTNGQRIPYIIS--------IAGSVAVGKSTTAR--VLQALLSRWPEHRRVELITTDGFPDIL---IL 127 (245)
T ss_dssp HHHHHHHHHHHHTCC-CCCCEEEE--------EEECTTSSHHHHHH--HHHHHHTTSTTCCCEEEEEGGGGCCEE---EE
T ss_pred HHHHHHHHHHHHCCCCCCCCEEEE--------EECCCCCCCCHHHH--HHHHHHHHHCCCCCEEEEECCEECCEE---EE
T ss_conf 999999999986344789988999--------86799998778999--999997313589953998211359979---97
Q ss_pred CCC
Q ss_conf 770
Q gi|254780799|r 503 DGI 505 (806)
Q Consensus 503 ~~i 505 (806)
|||
T Consensus 128 EGl 130 (245)
T 1sq5_A 128 EGL 130 (245)
T ss_dssp ECT
T ss_pred CCH
T ss_conf 252
No 138
>>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell membrane, GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* (A:1-172,A:259-274)
Probab=76.43 E-value=2.2 Score=21.96 Aligned_cols=24 Identities=21% Similarity=0.301 Sum_probs=20.4
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHH
Q ss_conf 020235530477406799999999
Q gi|254780799|r 453 RMPHLLIAGTTGSGKSVAINTMIL 476 (806)
Q Consensus 453 kMPHLLIAGtTGSGKSV~iN~iI~ 476 (806)
|-+.+.|.|-+|+|||--+|++.-
T Consensus 2 k~~~I~ivG~~~vGKSTLin~l~~ 25 (188)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTG 25 (188)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 988899998999979999999967
No 139
>>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} (A:1-183,A:295-339)
Probab=76.40 E-value=1.8 Score=22.69 Aligned_cols=42 Identities=29% Similarity=0.354 Sum_probs=27.5
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCCHHH
Q ss_conf 23553047740679999999999982995784788852310011102770343
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNL 508 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~iPHL 508 (806)
=+.|.|.||||||--.+.+. +.- ..++|-+|+.. +|.++||.
T Consensus 42 iIvI~GpSGSGKStLa~~La-----~~l--~~~ii~~D~~q----~y~~~~~t 83 (228)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLA-----AHF--PLEVINSDKMQ----VYKGLDIT 83 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHH-----TTS--CEEEEECCSST----TBSSCTTT
T ss_pred EEEEECCCCCCHHHHHHHHH-----HHC--CCEEEECCCHH----HCCCCCEE
T ss_conf 79998988538999999999-----987--99799524064----26999648
No 140
>>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus HB8} PDB: 2dwq_A (A:1-117,A:199-368)
Probab=76.17 E-value=1.8 Score=22.60 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=18.7
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 235530477406799999999999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLL 479 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlL 479 (806)
+..+.|.|++|||-.+|+|.-+=.
T Consensus 3 ~IaivG~pNvGKSTLiNaL~g~~v 26 (287)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRANA 26 (287)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 489978999989999999978797
No 141
>>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} (A:134-291)
Probab=76.15 E-value=2.3 Score=21.89 Aligned_cols=21 Identities=33% Similarity=0.494 Sum_probs=18.3
Q ss_pred EEEEEECCCCHHHHHHHHHHH
Q ss_conf 235530477406799999999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMIL 476 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~ 476 (806)
.++++|-.|+|||-..|.++-
T Consensus 16 ~v~l~G~sgaGKSTL~~~L~~ 36 (158)
T 1knx_A 16 GVLLTGRSGIGKSECALDLIN 36 (158)
T ss_dssp EEEEEESSSSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999982899987899999998
No 142
>>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* (A:1-199)
Probab=76.05 E-value=2.6 Score=21.48 Aligned_cols=43 Identities=14% Similarity=0.162 Sum_probs=26.2
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCC
Q ss_conf 0202355304774067999999999998299578478885231
Q gi|254780799|r 453 RMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPK 495 (806)
Q Consensus 453 kMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK 495 (806)
+--.++|-+.|||||+.|.---++.-+.+....-....++-..
T Consensus 38 ~~~~viv~apTGsGKTl~~~l~~l~~~~~~~~~~~~~~l~~~~ 80 (199)
T 2zj8_A 38 EGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKAL 80 (199)
T ss_dssp GTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGG
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHH
T ss_conf 7996899809986199999999999999669959999187999
No 143
>>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} (A:)
Probab=75.71 E-value=3.3 Score=20.73 Aligned_cols=148 Identities=22% Similarity=0.339 Sum_probs=80.3
Q ss_pred EEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHC-CHHHEE---------------------EEEECCCHHHHHHCCCC
Q ss_conf 85410020235530477406799999999999829-957847---------------------88852310011102770
Q gi|254780799|r 448 IADLARMPHLLIAGTTGSGKSVAINTMILSLLYRM-TPAQCR---------------------LIMIDPKMLELSVYDGI 505 (806)
Q Consensus 448 v~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~-~P~evk---------------------liliDPK~vEls~Y~~i 505 (806)
-.++.+-=.+.|-|.+|||||..++. |.+. .|++=+ ++.=||-..+.++.+.|
T Consensus 29 s~~i~~G~~~~ivG~sGsGKSTL~~l-----l~gl~~p~~G~I~~~g~di~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi 103 (247)
T 2ff7_A 29 NLSIKQGEVIGIVGRSGSGKSTLTKL-----IQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNI 103 (247)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHH-----HTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHH
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHH-----HHCCCCCCCCEEEECCEECHHHCHHHHHCEEEEEECCCCCCCCCCCCCC
T ss_conf 89985999999999999869999999-----9632478889999999995021336661818999477756785300131
Q ss_pred HHHHCCCCCCHHHHHHHHH-----HHHHHHHHHHHHHHHCCCCCHHHHH-HHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3431223343045668999-----9999999999999870899689999-999988744786677544677654543222
Q gi|254780799|r 506 PNLLTPVVTNPQKAVTVLK-----WLVCEMEERYQKMSKIGVRNIDGFN-LKVAQYHNTGKKFNRTVQTGFDRKTGEAIY 579 (806)
Q Consensus 506 PHLl~pVvTd~~kA~~aL~-----w~V~EMe~RY~l~a~~~vRni~~yN-~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (806)
- +-.|-.|+ .+...+++ ..|.+++..|+-.-.-.-+++.|=- +|+.-|++-
T Consensus 104 ~-~~~~~~~~-e~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGQ~QRialARAl--------------------- 160 (247)
T 2ff7_A 104 S-LANPGMSV-EKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARAL--------------------- 160 (247)
T ss_dssp T-TTCTTCCH-HHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHH---------------------
T ss_pred C-CCCCCCCH-HHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCHHHCEEEECHHHH---------------------
T ss_conf 3-46543448-999999999730345554102201110586786585562022005455---------------------
Q ss_pred CCCCCCCCCCCEEEEEHHH-HHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCC
Q ss_conf 3322323469868776344-68888732100588999999866414237999965777
Q gi|254780799|r 580 ETEHFDFQHMPYIVVVIDE-MADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPS 636 (806)
Q Consensus 580 ~~~~~~~~~lp~ivviiDE-laDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPs 636 (806)
-.-|- |+|.|| .+-|=..+.+.+...|.+++| |--.|+.|.|++
T Consensus 161 -------~~~p~-ililDEpts~lD~~~~~~i~~~l~~~~~-----~~tvi~vtHrl~ 205 (247)
T 2ff7_A 161 -------VNNPK-ILIFDEATSALDYESEHVIMRNMHKICK-----GRTVIIIAHRLS 205 (247)
T ss_dssp -------TTCCS-EEEECCCCSCCCHHHHHHHHHHHHHHHT-----TSEEEEECSSGG
T ss_pred -------HCCCC-CCCHHCCCCCCCHHHHHHHHHHHHHHHC-----CCEEEEEECCHH
T ss_conf -------12775-0022077635698899999998877746-----987999937899
No 144
>>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Pyrococcus horikoshii OT3} (A:)
Probab=75.48 E-value=2.7 Score=21.36 Aligned_cols=36 Identities=11% Similarity=-0.040 Sum_probs=26.8
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCC
Q ss_conf 2355304774067999999999998299578478885231
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPK 495 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK 495 (806)
=.+|+|.+|||||.....++...+-.-. +-+.|+..
T Consensus 23 i~~i~G~~g~GKT~~~~~~a~~~~~~g~----~v~~i~~e 58 (260)
T 3bs4_A 23 ILIHEEDASSRGKDILFYILSRKLKSDN----LVGMFSIS 58 (260)
T ss_dssp EEEEECSGGGCHHHHHHHHHHHHHHTTC----EEEEEECS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC----CEEEEEEC
T ss_conf 9999828999989999999999986799----37999804
No 145
>>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural genomics, NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii OT3} (A:163-357)
Probab=75.46 E-value=2.2 Score=22.04 Aligned_cols=24 Identities=29% Similarity=0.582 Sum_probs=20.4
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHH
Q ss_conf 020235530477406799999999
Q gi|254780799|r 453 RMPHLLIAGTTGSGKSVAINTMIL 476 (806)
Q Consensus 453 kMPHLLIAGtTGSGKSV~iN~iI~ 476 (806)
++|-+.|.|.+|+|||--+|.+.-
T Consensus 4 ~~~~v~ivG~~~~GKSsLin~l~~ 27 (195)
T 2e87_A 4 EIPTVVIAGHPNVGKSTLLKALTT 27 (195)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCS
T ss_pred CCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 888799961788456289999848
No 146
>>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helicase, alternative splicing, ATP-binding; 1.85A {Homo sapiens} PDB: 2g9n_A* (A:)
Probab=75.43 E-value=1.5 Score=23.33 Aligned_cols=137 Identities=13% Similarity=0.166 Sum_probs=68.1
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 23553047740679999999999982995784788852310011102770343122334304566899999999999999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEMEERYQ 535 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~iPHLl~pVvTd~~kA~~aL~w~V~EMe~RY~ 535 (806)
|++++.-|||||..+--.-+++.+.+.......++..-+.- .+....+.+..+...+.
T Consensus 69 dvi~~A~TGSGKTlayllpil~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~ 126 (237)
T 3bor_A 69 DVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRE----------------------LAQQIQKVILALGDYMG 126 (237)
T ss_dssp CEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHH----------------------HHHHHHHHHHHHTTTTT
T ss_pred CEEEECCCCCCCCEEEECCCCCCCCCCCCCCCEEEECCHHH----------------------HHHHHHHHHHHHCCCCC
T ss_conf 88997577646521120133322233345641255310466----------------------77789999999625456
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCEEEEEHHHHHHHHHHCCCHH
Q ss_conf 998708996899999999887447866775446776545432-----223322323469868776344688887321005
Q gi|254780799|r 536 KMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEA-----IYETEHFDFQHMPYIVVVIDEMADLMMVARKDI 610 (806)
Q Consensus 536 l~a~~~vRni~~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~lp~ivviiDElaDlmm~~~~~v 610 (806)
......+..-...++... ..+.+- |--.+.| ........+..+=|+ |+|| ||.|+-. .-
T Consensus 127 ~~~~~~~~g~~~~~~~~~-~~~~~~----------~iii~Tpgrl~~~~~~~~~~l~~l~~l--VlDE-aD~ll~~--~f 190 (237)
T 3bor_A 127 ATCHACIGGTNVRNEMQK-LQAEAP----------HIVVGTPGRVFDMLNRRYLSPKWIKMF--VLDE-ADEMLSR--GF 190 (237)
T ss_dssp CCEEEECC--------------CCC----------SEEEECHHHHHHHHHTTSSCSTTCCEE--EEES-HHHHHHT--TC
T ss_pred CEEEEEEECCCCHHHHHH-HHCCCC----------CEEEECCHHHHHHHHCCCCCCCCCEEE--EEEC-HHHHHCC--CC
T ss_conf 369999850441478898-750687----------189958557777876088655675699--8600-1244215--72
Q ss_pred HHHHHHHHHHHHHCCEEEEE
Q ss_conf 88999999866414237999
Q gi|254780799|r 611 ESAVQRLAQMARASGIHVIM 630 (806)
Q Consensus 611 e~~i~rlaq~ara~GiHli~ 630 (806)
+..+.||-.+.+----.+..
T Consensus 191 ~~~i~~I~~~~~~~~Q~il~ 210 (237)
T 3bor_A 191 KDQIYEIFQKLNTSIQVVLL 210 (237)
T ss_dssp HHHHHHHHHHSCTTCEEEEE
T ss_pred HHHHHHHHHHCCCCCEEEEE
T ss_conf 99999999868999869999
No 147
>>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp} (A:)
Probab=75.34 E-value=3.7 Score=20.33 Aligned_cols=52 Identities=8% Similarity=0.117 Sum_probs=44.4
Q ss_pred HHHHHHHHHCCCEEEEHHHHHHC----CCHHHHHHHHHHHHHCCCCCHHHCCCCCE
Q ss_conf 99999999659850001422200----11778999999999779868022788726
Q gi|254780799|r 744 KQAVDIVLRDNKASISYIQRRLG----IGYNRAASIIENMEEKGVIGPASSTGKRE 795 (806)
Q Consensus 744 ~~a~~~v~~~~~~s~s~lqr~~~----igy~raar~~~~~e~~giv~~~~g~~~r~ 795 (806)
.+..+++.+.+.++.+-|+.+|. +-|+--.++++.||++|+|......+.|.
T Consensus 38 ~~vm~~lW~~~~~t~~ei~~~l~~~~~~~~sTv~t~L~rL~~KG~v~r~~~gr~~~ 93 (99)
T 2k4b_A 38 LIVMRVIWSLGEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEKEGRKFV 93 (99)
T ss_dssp SHHHHHHHHHSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEEETTEEE
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCEEE
T ss_conf 99999999079958999999851244877334999999999889879995299089
No 148
>>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A* (A:1-114)
Probab=75.33 E-value=2.7 Score=21.38 Aligned_cols=60 Identities=12% Similarity=0.187 Sum_probs=51.5
Q ss_pred HHHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHC-CCCCEEEECHHHH
Q ss_conf 99999999659850001422200117789999999997798680227-8872673171253
Q gi|254780799|r 744 KQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPASS-TGKREILISSMEE 803 (806)
Q Consensus 744 ~~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~~g-~~~r~vl~~~~~~ 803 (806)
-.++..+...+..|.+-|-+++.+-=....|+++.||++|+|--... .-.|.+++.-.+.
T Consensus 32 ~~iL~~l~~~~~~t~~~la~~~~~~~~~vs~~i~~L~~~gli~r~~~~~DkR~~~i~LT~~ 92 (114)
T 3bpv_A 32 VACLLRIHREPGIKQDELATFFHVDKGTIARTLRRLEESGFIEREQDPENRRRYILEVTRR 92 (114)
T ss_dssp HHHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECHH
T ss_conf 9999999858998999999998969889999999999689868611589988578788989
No 149
>>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} (A:1-202)
Probab=75.28 E-value=2.7 Score=21.36 Aligned_cols=37 Identities=19% Similarity=0.273 Sum_probs=24.0
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCC
Q ss_conf 02355304774067999999999998299578478885231
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPK 495 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK 495 (806)
.+++|++.||||||.+.--.+..... ...+-+.+-|-
T Consensus 41 ~~~iv~~pTGsGKT~~~~l~~~~~~~----~~~~~l~l~Pt 77 (202)
T 2p6r_A 41 KNLLLAMPTAAGKTLLAEMAMVREAI----KGGKSLYVVPL 77 (202)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHHHHH----TTCCEEEEESS
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHHH----CCCCEEEECCH
T ss_conf 99999818986299999999999986----19959999288
No 150
>>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, ABC ATPase, dimer, kleisin, mitosis, cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} (A:1-156,A:355-430)
Probab=75.19 E-value=4.1 Score=19.99 Aligned_cols=33 Identities=21% Similarity=0.274 Sum_probs=25.0
Q ss_pred CCEEEEECCCCCEEEEEECCCCHHHHHHHHHHH
Q ss_conf 666785410020235530477406799999999
Q gi|254780799|r 444 GKPIIADLARMPHLLIAGTTGSGKSVAINTMIL 476 (806)
Q Consensus 444 G~pvv~DLakMPHLLIAGtTGSGKSV~iN~iI~ 476 (806)
++....|+..=-.-.|-|-.|||||--+|+|-.
T Consensus 16 ~~~~~i~~~~~~i~~IiGpNGsGKSTll~aI~~ 48 (232)
T 1w1w_A 16 RGVTKVGFGESNFTSIIGPNGSGKSNMMDAISF 48 (232)
T ss_dssp CSEEEEECTTCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 798898689999899999999989999999999
No 151
>>3kqn_A Serine protease/ntpase/helicase NS3; helicase-substrate transition-state complex, HCV, NS3 protein, helicase, DNA-binding; HET: ADP; 2.05A {Hepatitis c virus} PDB: 3kql_A* 3kqu_A* 3kqh_A 3kqk_A 2zjo_A* 8ohm_A 1a1v_A* 2f55_A 1hei_A 1jr6_A 1onb_A (A:1-141,A:295-395)
Probab=75.11 E-value=1.7 Score=22.86 Aligned_cols=28 Identities=21% Similarity=0.226 Sum_probs=20.7
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 1002023553047740679999999999
Q gi|254780799|r 451 LARMPHLLIAGTTGSGKSVAINTMILSL 478 (806)
Q Consensus 451 LakMPHLLIAGtTGSGKSV~iN~iI~Sl 478 (806)
|.+=-++|+.+-||||||...-..|+.-
T Consensus 6 L~~gk~vIi~APTGSGKT~~~ll~il~~ 33 (242)
T 3kqn_A 6 PQTFQVAHLHAPTGSGKSTKVPAAYAAQ 33 (242)
T ss_dssp CSSCEEEEEECCTTSSTTTHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 6325769999289871999999999967
No 152
>>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A* (A:1-53)
Probab=75.10 E-value=4.1 Score=20.02 Aligned_cols=49 Identities=24% Similarity=0.312 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHH
Q ss_conf 7038999999996598500014222001177899999999977986802
Q gi|254780799|r 740 DDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPA 788 (806)
Q Consensus 740 d~l~~~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~ 788 (806)
|++=.+-+++..+..+.|..-|-+++.+-=.-..+-|..||++|||-.+
T Consensus 2 D~~D~~IL~~L~~d~r~~~~elA~~lgvS~~tv~~ri~~L~~~GiI~~~ 50 (53)
T 2pn6_A 2 DEIDLRILKILQYNAKYSLDEIAREIRIPKATLSYRIKKLEKDGVIKGY 50 (53)
T ss_dssp CHHHHHHHHHHTTCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCC
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCHHHHHC
T ss_conf 8899999999998599999999999891999999999999723034310
No 153
>>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} (A:1-177)
Probab=74.99 E-value=2.8 Score=21.25 Aligned_cols=32 Identities=31% Similarity=0.475 Sum_probs=26.6
Q ss_pred CCCCCE-EEEEECCCCHHHHHHHHHHHHHHHHC
Q ss_conf 100202-35530477406799999999999829
Q gi|254780799|r 451 LARMPH-LLIAGTTGSGKSVAINTMILSLLYRM 482 (806)
Q Consensus 451 LakMPH-LLIAGtTGSGKSV~iN~iI~SlLyk~ 482 (806)
-.+.|| +|..|-.|.||+-...++.-.+....
T Consensus 34 ~~~~~~~~Ll~GppG~GKT~~A~~la~~~~~~~ 66 (177)
T 1jr3_A 34 LGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET 66 (177)
T ss_dssp HTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 699772376579999879999999999967878
No 154
>>2cyy_A Putative HTH-type transcriptional regulator PH1519; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} (A:1-57)
Probab=74.73 E-value=5.3 Score=19.17 Aligned_cols=50 Identities=26% Similarity=0.395 Sum_probs=45.2
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCH
Q ss_conf 77703899999999659850001422200117789999999997798680
Q gi|254780799|r 738 VADDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGP 787 (806)
Q Consensus 738 ~~d~l~~~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~ 787 (806)
+.|++=.+-+++..+.++.|.+-|-+++.+-=.-..+-|+.||++|||-.
T Consensus 4 ~ld~~D~~IL~~L~~d~r~s~~elA~~lgvS~~tv~~ri~~L~~~GiI~~ 53 (57)
T 2cyy_A 4 PLDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKK 53 (57)
T ss_dssp CCCHHHHHHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCC
T ss_pred CHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 77099999999999748999999999989298999999999973343021
No 155
>>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} (A:)
Probab=74.36 E-value=1.6 Score=23.13 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=21.6
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHH
Q ss_conf 10020235530477406799999999
Q gi|254780799|r 451 LARMPHLLIAGTTGSGKSVAINTMIL 476 (806)
Q Consensus 451 LakMPHLLIAGtTGSGKSV~iN~iI~ 476 (806)
-.+.++++|.|.+|+|||-.||.++-
T Consensus 18 ~~~~~ki~iiG~~~~GKTSLi~~l~~ 43 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKP 43 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSC
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHHH
T ss_conf 99547999999999899999999972
No 156
>>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} (A:347-549)
Probab=74.20 E-value=3.8 Score=20.29 Aligned_cols=28 Identities=32% Similarity=0.361 Sum_probs=21.7
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 2355304774067999999999998299
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMT 483 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~ 483 (806)
.+|++..|||||+.+.--.++..+.+..
T Consensus 45 ~~l~~a~TGsGKT~~~~l~~~~~~~~~~ 72 (203)
T 1gm5_A 45 NRLLQGDVGSGKTVVAQLAILDNYEAGF 72 (203)
T ss_dssp CCEEECCSSSSHHHHHHHHHHHHHHHTS
T ss_pred EEEEEECCCCCCEEEEHHHHHHHHHCCC
T ss_conf 2999806898670522844899996389
No 157
>>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP} (A:1-131)
Probab=73.91 E-value=3.1 Score=20.86 Aligned_cols=58 Identities=22% Similarity=0.262 Sum_probs=48.1
Q ss_pred HHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHC-CCCCEEEECHHH
Q ss_conf 9999999659850001422200117789999999997798680227-887267317125
Q gi|254780799|r 745 QAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPASS-TGKREILISSME 802 (806)
Q Consensus 745 ~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~~g-~~~r~vl~~~~~ 802 (806)
..+.++...+-.+.+-|=+++.|=-..+.|+++.||++|+|--..+ .-.|.+.+.-.+
T Consensus 50 ~iL~~l~~~~~~t~~~La~~~~i~~~~vs~~v~~L~~~GlV~r~~~~~D~R~~~i~lT~ 108 (131)
T 3k0l_A 50 TALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTP 108 (131)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEECCCCCCEEEEEECH
T ss_conf 99999996799799999998588946489999999987984674347777137878777
No 158
>>2e1c_A Putative HTH-type transcriptional regulator PH1519; DNA-binding; HET: DNA; 2.10A {Pyrococcus horikoshii OT3} (A:1-77)
Probab=73.82 E-value=5.7 Score=18.91 Aligned_cols=53 Identities=25% Similarity=0.352 Sum_probs=47.3
Q ss_pred CCCCCCHHHHHHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCH
Q ss_conf 88777703899999999659850001422200117789999999997798680
Q gi|254780799|r 735 NSSVADDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGP 787 (806)
Q Consensus 735 ~~~~~d~l~~~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~ 787 (806)
...+.|++=.+-+++..+.++.|.+-|-+++.+--.-..|-++.||+.|+|--
T Consensus 21 ~~~~ld~~D~~Il~~Lq~d~r~s~~ela~~lgis~~tv~~ri~rL~~~gvI~~ 73 (77)
T 2e1c_A 21 MRVPLDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKK 73 (77)
T ss_dssp ---CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCC
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEE
T ss_conf 65884799999999999838989999999988198999999999852455034
No 159
>>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A (A:)
Probab=73.63 E-value=1.7 Score=22.94 Aligned_cols=39 Identities=26% Similarity=0.359 Sum_probs=23.3
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHH--HEEEEEECC
Q ss_conf 235530477406799999999999829957--847888523
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPA--QCRLIMIDP 494 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~--evkliliDP 494 (806)
++++...|||||+.|-=--++..+++..+. .++.+-+=|
T Consensus 40 dvi~~a~TGsGKTlayllp~l~~~~~~~~~~~~~~~li~~p 80 (207)
T 2gxq_A 40 DLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTP 80 (207)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECS
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHCCCHHCCCCCEEEEEEC
T ss_conf 87865112454125568889876342101157866999957
No 160
>>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, structural genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} (A:45-125)
Probab=73.62 E-value=5.4 Score=19.08 Aligned_cols=58 Identities=22% Similarity=0.181 Sum_probs=46.6
Q ss_pred HHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHH-HCCCCCEEEE--CHHH
Q ss_conf 99999996598500014222001177899999999977986802-2788726731--7125
Q gi|254780799|r 745 QAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPA-SSTGKREILI--SSME 802 (806)
Q Consensus 745 ~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~-~g~~~r~vl~--~~~~ 802 (806)
.++.++.+.+..|.+-|-+++.+-=.-..|++..||++|+|--. +-...|.+++ ++..
T Consensus 8 ~iL~~l~~~~~~t~~~la~~l~~~~~~vs~~i~~L~~~g~i~r~~~~~D~R~~~i~lT~~G 68 (81)
T 2fxa_A 8 HILWIAYQLNGASISEIAKFGVXHVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEG 68 (81)
T ss_dssp HHHHHHHHHTSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECC------CEEEECHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCEEECCCCCCCCEEEEEECHHH
T ss_conf 9999999769958999999984575537799999998799656558877761487889899
No 161
>>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} (A:1-173)
Probab=73.59 E-value=2.5 Score=21.58 Aligned_cols=19 Identities=37% Similarity=0.656 Sum_probs=17.4
Q ss_pred EEEEECCCCHHHHHHHHHH
Q ss_conf 3553047740679999999
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI 475 (806)
..+.|-+|+|||-.||+++
T Consensus 4 V~iiG~~~~GKSSli~~l~ 22 (173)
T 1mky_A 4 VLIVGRPNVGKSTLFNKLV 22 (173)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHH
T ss_conf 9998999962999999997
No 162
>>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor; HET: SAL; 2.30A {Escherichia coli} (A:1-122)
Probab=73.44 E-value=3.4 Score=20.64 Aligned_cols=59 Identities=10% Similarity=0.166 Sum_probs=49.6
Q ss_pred HHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHH-HCCCCCEEEECHHHH
Q ss_conf 99999996598500014222001177899999999977986802-278872673171253
Q gi|254780799|r 745 QAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPA-SSTGKREILISSMEE 803 (806)
Q Consensus 745 ~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~-~g~~~r~vl~~~~~~ 803 (806)
.++..+-..+-.+.+-|-+++.+-=+-+.|+++.||++|+|-.. +....|.+++.-.++
T Consensus 38 ~iL~~l~~~~~~t~~~la~~l~i~~~~vs~~i~~L~~~g~i~r~~~~~D~R~~~i~lT~~ 97 (122)
T 1jgs_A 38 KVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTG 97 (122)
T ss_dssp HHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHH
T ss_conf 999999877998999999998978868999999998689879844688887568888988
No 163
>>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} PDB: 1lnw_A (A:1-122)
Probab=73.30 E-value=2.1 Score=22.24 Aligned_cols=60 Identities=8% Similarity=0.185 Sum_probs=49.8
Q ss_pred HHHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHH-HCCCCCEEEECHHHH
Q ss_conf 999999996598500014222001177899999999977986802-278872673171253
Q gi|254780799|r 744 KQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPA-SSTGKREILISSMEE 803 (806)
Q Consensus 744 ~~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~-~g~~~r~vl~~~~~~ 803 (806)
-.++..+-..+..|.|-|-+++.+-=+-..|+++.||++|+|--. +....|.+++.-.++
T Consensus 40 ~~iL~~l~~~~~~t~~~la~~~~~~~~~vs~~i~~L~~~G~I~r~~~~~D~R~~~i~lT~~ 100 (122)
T 3ech_A 40 VHVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDE 100 (122)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC----------CCEECHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCEEECCCCCCCCEEEEEECHH
T ss_conf 9999999987998999999997935726999999999961320001677674136578888
No 164
>>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} (A:1-232)
Probab=72.99 E-value=3.2 Score=20.79 Aligned_cols=34 Identities=24% Similarity=0.209 Sum_probs=27.9
Q ss_pred ECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 4100202355304774067999999999998299
Q gi|254780799|r 450 DLARMPHLLIAGTTGSGKSVAINTMILSLLYRMT 483 (806)
Q Consensus 450 DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~ 483 (806)
.+-+-.+..+.|.+|.|||--||+++-...++..
T Consensus 156 ~~~~~~~v~~vG~~nvGKSsliN~ll~~~~~~~~ 189 (232)
T 3h2y_A 156 YYRGGKDVYVVGCTNVGKSTFINRXIKEFSDETE 189 (232)
T ss_dssp HHHTTSCEEEEEBTTSSHHHHHHHHHHHHTTSCS
T ss_pred HHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 5027863899789988778999998664122465
No 165
>>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} (A:1-114)
Probab=72.89 E-value=2.8 Score=21.29 Aligned_cols=41 Identities=27% Similarity=0.360 Sum_probs=26.5
Q ss_pred CC-EEEEEECCCCHHHHHHHHHHHHHH--HHCCHHHEEEEEECC
Q ss_conf 20-235530477406799999999999--829957847888523
Q gi|254780799|r 454 MP-HLLIAGTTGSGKSVAINTMILSLL--YRMTPAQCRLIMIDP 494 (806)
Q Consensus 454 MP-HLLIAGtTGSGKSV~iN~iI~SlL--yk~~P~evkliliDP 494 (806)
|| =.+++|..|||||-..+.+--.+- +-.+.|++|..+...
T Consensus 1 Mp~viil~G~pGsGKTT~a~~L~~~~~~~~~~~~D~~r~~~~~~ 44 (114)
T 1ly1_A 1 MKKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAH 44 (114)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEECHHHHHHHHCC
T ss_conf 98799998989999899999999848997998515889987111
No 166
>>2ia0_A Putative HTH-type transcriptional regulator PF0864; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus} (A:1-66)
Probab=72.63 E-value=6.1 Score=18.72 Aligned_cols=52 Identities=23% Similarity=0.325 Sum_probs=46.8
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCH
Q ss_conf 8777703899999999659850001422200117789999999997798680
Q gi|254780799|r 736 SSVADDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGP 787 (806)
Q Consensus 736 ~~~~d~l~~~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~ 787 (806)
....|++-.+-++++.+.+++|..-|=+++.+-=.-..+-+..||+.|+|--
T Consensus 12 ~~~ld~~D~~IL~~L~~~~r~s~~ela~~lgls~~tv~~ri~~L~~~GvI~~ 63 (66)
T 2ia0_A 12 EIHLDDLDRNILRLLKKDARLTISELSEQLKKPESTIHFRIKKLQERGVIER 63 (66)
T ss_dssp --CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 4763899999999999848999999999989099999999999984462489
No 167
>>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} (A:1-122)
Probab=72.58 E-value=3.2 Score=20.79 Aligned_cols=59 Identities=15% Similarity=0.211 Sum_probs=49.3
Q ss_pred HHHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHC-CCCCEEEECHHH
Q ss_conf 99999999659850001422200117789999999997798680227-887267317125
Q gi|254780799|r 744 KQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPASS-TGKREILISSME 802 (806)
Q Consensus 744 ~~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~~g-~~~r~vl~~~~~ 802 (806)
-.++.++...+..|.+-|-+++.+--.-+.|+++.||++|+|--... .-.|.+.+.-.+
T Consensus 40 ~~iL~~i~~~~~~t~~ela~~~~i~~~~vsr~v~~L~~~g~v~r~~~~~D~R~~~i~lT~ 99 (122)
T 1s3j_A 40 LFVLASLKKHGSLKVSEIAERXEVKPSAVTLXADRLEQKNLIARTHNTKDRRVIDLSLTD 99 (122)
T ss_dssp HHHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCH
T ss_conf 999999998699799999999896998999999999862425520233677520002489
No 168
>>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus stearothermophilus} (A:1-71,A:168-339)
Probab=72.54 E-value=2 Score=22.35 Aligned_cols=116 Identities=21% Similarity=0.155 Sum_probs=67.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 33430456689999999999999999870899689999999988744786677544677654543222332232346986
Q gi|254780799|r 512 VVTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPY 591 (806)
Q Consensus 512 VvTd~~kA~~aL~w~V~EMe~RY~l~a~~~vRni~~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ 591 (806)
.+|+ |-...++|+++ .--+..+-.-||+-+.-.+--+-.+..|.+-. ++..- .| ....++.|+-
T Consensus 74 ~LTe--kD~~di~~a~~---~~vD~ialSfVr~a~di~~vr~~l~~~~~~~~-~IiaK---------IE-~~~ai~nl~e 137 (243)
T 2e28_A 74 GITE--KDRADILFGIR---QGIDFIAASFVRRASDVLEIRELLEAHDALHI-QIIAK---------IE-NEEGVANIDE 137 (243)
T ss_dssp SCCH--HHHHHHHHHHH---HTCSEEEESSCCSHHHHHHHHHHHHHTTCTTS-EEEEE---------EC-SHHHHHTHHH
T ss_pred CCCH--HHHHHHHHHHH---CCCCEEEECCCCCCHHHHHHHHHHHHHCCCCC-CCEEE---------EE-CHHHHHHHHH
T ss_conf 2215--67999887765---08886751354873357889876554114455-61023---------40-4566651477
Q ss_pred EEEEHHHHHHHHHHCCCH---------HHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHCCCCEE
Q ss_conf 877634468888732100---------5889999998664142379999657775355435541102515
Q gi|254780799|r 592 IVVVIDEMADLMMVARKD---------IESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRI 652 (806)
Q Consensus 592 ivviiDElaDlmm~~~~~---------ve~~i~rlaq~ara~GiHli~aTqrPsvdvitg~ikan~p~ri 652 (806)
|+ +.+|=+|+|..| |=..=-++-+++|.+|.-.|+||| +...+++...|||-
T Consensus 138 Ii----~~sDgimIaRGDLgve~~~e~v~~~Qk~ii~~c~~~~kpvI~ATq-----~LeSM~~~~~PTRA 198 (243)
T 2e28_A 138 IL----EAADGLMVARGDLGVEIPAEEVPLIQKLLIKKSNMLGKPVITATQ-----MLDSMQRNPRPTRA 198 (243)
T ss_dssp HH----HHSSEEEEEHHHHHHHSCGGGHHHHHHHHHHHHHHHTCCEEEESS-----SSGGGGTCSSCCHH
T ss_pred HH----HHCCEEEEECCCHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEHH-----HHHHHHHCCCCCCH
T ss_conf 87----646479996565121069889999999999998852983998589-----76667508999744
No 169
>>2p67_A LAO/AO transport system kinase; ARGK, structural genomics, PSI-2, protein structure initiative; 1.80A {Escherichia coli K12} (A:1-265)
Probab=72.44 E-value=4.8 Score=19.49 Aligned_cols=42 Identities=26% Similarity=0.404 Sum_probs=29.7
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCH
Q ss_conf 02023553047740679999999999982995784788852310
Q gi|254780799|r 453 RMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKM 496 (806)
Q Consensus 453 kMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~ 496 (806)
+-|...|.|.+|+|||--+|.+.-.+.-+. ..+..+-.||=.
T Consensus 55 ~~~~v~ivG~~~aGKSTLln~L~~~~~~~g--~~~~~~~~~~~~ 96 (265)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLIREG--LKVAVIAVDPSS 96 (265)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHTT--CCEEEEEECCC-
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCC--CCEEEEECCCCC
T ss_conf 841897448999989999999999986368--824774158875
No 170
>>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} (A:)
Probab=72.41 E-value=3.2 Score=20.78 Aligned_cols=25 Identities=28% Similarity=0.402 Sum_probs=21.4
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 0202355304774067999999999
Q gi|254780799|r 453 RMPHLLIAGTTGSGKSVAINTMILS 477 (806)
Q Consensus 453 kMPHLLIAGtTGSGKSV~iN~iI~S 477 (806)
+-|+++|-|-+|.|||-.+|++.-.
T Consensus 3 ~~~kI~iiG~~~vGKSsLin~l~~~ 27 (172)
T 2gj8_A 3 HGXKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 7768999999999899999999688
No 171
>>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} (A:35-99)
Probab=72.30 E-value=4.6 Score=19.65 Aligned_cols=55 Identities=15% Similarity=0.265 Sum_probs=47.3
Q ss_pred HHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHC-CCCCEEEEC
Q ss_conf 9999999659850001422200117789999999997798680227-887267317
Q gi|254780799|r 745 QAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPASS-TGKREILIS 799 (806)
Q Consensus 745 ~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~~g-~~~r~vl~~ 799 (806)
.++.++...+..|.+-|=+++.+-=..+.|+++.||++|+|--... ...|.+++.
T Consensus 8 ~vL~~l~~~~~~t~~ela~~~~~~~~~vsr~i~~L~~~g~I~r~~~~~D~R~~~i~ 63 (65)
T 2nnn_A 8 AALVRLGETGPCPQNQLGRLTAXDAATIKGVVERLDKRGLIQRSADPDDGRRLLVS 63 (65)
T ss_dssp HHHHHHHHHSSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEE
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEECCCCCCHHHHC
T ss_conf 99999998799399999998787853142899999867880464535544113101
No 172
>>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} (E:1-192)
Probab=72.29 E-value=2.1 Score=22.14 Aligned_cols=35 Identities=23% Similarity=0.242 Sum_probs=29.2
Q ss_pred CCCCE-EEEEECCCCHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 00202-355304774067999999999998299578
Q gi|254780799|r 452 ARMPH-LLIAGTTGSGKSVAINTMILSLLYRMTPAQ 486 (806)
Q Consensus 452 akMPH-LLIAGtTGSGKSV~iN~iI~SlLyk~~P~e 486 (806)
.++|| +|+.|-.|+||+-....+.-.|++...+..
T Consensus 33 ~~~~~~lLl~Gp~G~GKt~~A~~la~~l~~~~~~~~ 68 (192)
T 1sxj_E 33 PRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRL 68 (192)
T ss_dssp TTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC-
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCC
T ss_conf 998786988897999899999999998659863212
No 173
>>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* (A:)
Probab=72.15 E-value=2.6 Score=21.42 Aligned_cols=163 Identities=23% Similarity=0.324 Sum_probs=79.7
Q ss_pred EEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCC--------CC----HHHHCCCC
Q ss_conf 6785410020235530477406799999999999829957847888523100111027--------70----34312233
Q gi|254780799|r 446 PIIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYD--------GI----PNLLTPVV 513 (806)
Q Consensus 446 pvv~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~--------~i----PHLl~pVv 513 (806)
.+-.++.+==-+-|.|-.|||||..+++|-- | ..|++= =|.+|-+-+.-.--+ |+ ++ |.|--
T Consensus 42 ~vsl~i~~Gei~~iiG~sGsGKSTll~~i~g--l--~~~~~G-~I~~~g~~~~~~~~~~~~~r~~ig~vfQ~~~-L~p~l 115 (263)
T 2olj_A 42 GINVHIREGEVVVVIGPSGSGKSTFLRCLNL--L--EDFDEG-EIIIDGINLKAKDTNLNKVREEVGMVFQRFN-LFPHM 115 (263)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHTT--S--SCCSEE-EEEETTEESSSTTCCHHHHHHHEEEECSSCC-CCTTS
T ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHCC--C--CCCCCE-EEEECCEEECCCCHHHCHHHHCCCEECCCHH-CCCCC
T ss_conf 5166887997999987999988899998638--9--768751-8999999942863111556514621412000-06466
Q ss_pred CCHHHHHHH----HHHHHHHHHHH-HHHHHHCCCCC--------HHHHH-HHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 430456689----99999999999-99998708996--------89999-999988744786677544677654543222
Q gi|254780799|r 514 TNPQKAVTV----LKWLVCEMEER-YQKMSKIGVRN--------IDGFN-LKVAQYHNTGKKFNRTVQTGFDRKTGEAIY 579 (806)
Q Consensus 514 Td~~kA~~a----L~w~V~EMe~R-Y~l~a~~~vRn--------i~~yN-~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (806)
|=-...+.+ -+|.=+|.++| -+++...|..+ +.|=+ +|+.-|++-
T Consensus 116 tV~eNi~~~~l~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~p~~LSGGq~QRvaIARAL--------------------- 174 (263)
T 2olj_A 116 TVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARAL--------------------- 174 (263)
T ss_dssp CHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHH---------------------
T ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHH---------------------
T ss_conf 57888899999872899999999999999875987786478600056788999998888---------------------
Q ss_pred CCCCCCCCCCCEEEEEHHH-HHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHCCCCEEEE
Q ss_conf 3322323469868776344-68888732100588999999866414237999965777535543554110251587
Q gi|254780799|r 580 ETEHFDFQHMPYIVVVIDE-MADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRISF 654 (806)
Q Consensus 580 ~~~~~~~~~lp~ivviiDE-laDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPsvdvitg~ikan~p~riaf 654 (806)
-.=| =|++-|| .+-|-..+..+|.+.|..|.+ -|+-+|+.|+..+. =..+.-||.+
T Consensus 175 -------~~~P-~llllDEPt~~LD~~~~~~i~~ll~~l~~----~G~tiiivtHdl~~-------~~~~~dri~v 231 (263)
T 2olj_A 175 -------AMEP-KIMLFDEPTSALDPEMVGEVLSVMKQLAN----EGMTMVVVTHEMGF-------AREVGDRVLF 231 (263)
T ss_dssp -------TTCC-SEEEEESTTTTSCHHHHHHHHHHHHHHHH----TTCEEEEECSCHHH-------HHHHCSEEEE
T ss_pred -------HCCC-CEEEECCCCCCCCHHHHHHHHHHHHHCCC----CCCEEEEEECCHHH-------HHHHCCEEEE
T ss_conf -------4499-76870688753697787668999985246----88669999289999-------9986999999
No 174
>>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genomics, protein structure initiative; 2.30A {Agrobacterium tumefaciens str} (A:1-53)
Probab=71.89 E-value=5.4 Score=19.12 Aligned_cols=49 Identities=22% Similarity=0.405 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHH
Q ss_conf 7038999999996598500014222001177899999999977986802
Q gi|254780799|r 740 DDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPA 788 (806)
Q Consensus 740 d~l~~~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~ 788 (806)
|++=.+-+++..+..+.|.+-|=+++.+-=+-..+-|..||+.||+-.+
T Consensus 2 D~~D~~IL~~L~~dar~s~~elA~~lgis~~~v~~Ri~~L~~~GiI~~y 50 (53)
T 3i4p_A 2 DRLDRKILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKXEEDGVIRRR 50 (53)
T ss_dssp CHHHHHHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSSCCC
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 8799999999998589999999999891999999999999837974636
No 175
>>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} (A:150-424,A:686-712)
Probab=71.89 E-value=6.2 Score=18.64 Aligned_cols=40 Identities=28% Similarity=0.467 Sum_probs=25.8
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCC
Q ss_conf 202355304774067999999999998299578478885231
Q gi|254780799|r 454 MPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPK 495 (806)
Q Consensus 454 MPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK 495 (806)
-+.+|+|..||+||++-.=+++..++-+. +..-=||+ =|+
T Consensus 21 ~~~~lLad~~G~GKT~~ai~~~~~l~~~~-~~~~vLIv-~P~ 60 (302)
T 3dmq_A 21 APRVLLADEVGLGKTIEAGXILHQQLLSG-AAERVLII-VPE 60 (302)
T ss_dssp SCEEEECCCTTSCHHHHHHHHHHHHHHTS-SCCCEEEE-CCT
T ss_pred CCCEEEECCCCHHHHHHHHHHHHHHHHHC-CCCCEEEE-ECH
T ss_conf 99999987996359999999999999838-99968999-887
No 176
>>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 2zzy_A (A:)
Probab=71.82 E-value=3 Score=21.06 Aligned_cols=40 Identities=18% Similarity=0.262 Sum_probs=20.8
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHH
Q ss_conf 35530477406799999999999829957847888523100
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKML 497 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~v 497 (806)
+-+.|.+|||||.-++++. ..++...|-.+.+-=.+++..
T Consensus 4 i~lvGpsGsGKsTL~~~L~-~~~~~~~~~~~~~~~~~~~~~ 43 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLF-AEYPDSFGFSVSSTTRTPRAG 43 (186)
T ss_dssp EEEESSSSSSHHHHHHHHH-HHCGGGEECCCEEECSCCCTT
T ss_pred EEEECCCCCCHHHHHHHHH-HHCCCCEEEEEEECCCCCCCC
T ss_conf 9998999999899999999-748856236664504799999
No 177
>>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A (W:96-285)
Probab=71.61 E-value=2.8 Score=21.28 Aligned_cols=38 Identities=24% Similarity=0.370 Sum_probs=27.3
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCH
Q ss_conf 3553047740679999999999982995784788852310
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKM 496 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~ 496 (806)
+.+-|.+|||||-.+++|- =+++.+--+|.+.-.|+-.
T Consensus 9 v~ivGpnG~GKSTll~~l~--gll~~~~g~v~~~g~d~~~ 46 (190)
T 2j37_W 9 IMFVGLQGSGKTTTCSKLA--YYYQRKGWKTCLICADTFR 46 (190)
T ss_dssp EEEECSTTSSHHHHHHHHH--HHHHHTTCCEEEEEECCSS
T ss_pred EEEECCCCCCCCCHHHHHH--HHHHHCCCCCCEEECCHHH
T ss_conf 9973575567532599999--9997413543112011120
No 178
>>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} (A:)
Probab=71.49 E-value=4.9 Score=19.39 Aligned_cols=46 Identities=11% Similarity=0.162 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCH
Q ss_conf 3899999999659850001422200117789999999997798680
Q gi|254780799|r 742 LYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGP 787 (806)
Q Consensus 742 l~~~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~ 787 (806)
+...-.++.-+.+.+|.+-|.++|.|--.-..+.+..||++|+|--
T Consensus 9 yL~~I~~l~~~~~~v~~~diA~~l~Vs~~sV~~~i~~L~~~GlV~~ 54 (142)
T 1on2_A 9 YIEQIYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIY 54 (142)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 9999999996389976999999969887899999999997799650
No 179
>>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, hydrolase; HET: GDP; 1.75A {Pyrococcus abyssi} (A:)
Probab=71.44 E-value=4.3 Score=19.88 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=19.4
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 0235530477406799999999999
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTMILSLL 479 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~iI~SlL 479 (806)
|=..|.|..|||||-.++.|+..+-
T Consensus 15 ~~i~i~G~~gaGKTTl~~~Ll~~~~ 39 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 8899993899839999999999870
No 180
>>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.70A {Thermus thermophilus HB8} PDB: 2d2f_A* (A:)
Probab=71.17 E-value=4.8 Score=19.46 Aligned_cols=163 Identities=19% Similarity=0.176 Sum_probs=78.6
Q ss_pred CCCCCCCCEEEEECC----CCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCC----C---H
Q ss_conf 045666666785410----0202355304774067999999999998299578478885231001110277----0---3
Q gi|254780799|r 438 LGKSIEGKPIIADLA----RMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDG----I---P 506 (806)
Q Consensus 438 LGKdI~G~pvv~DLa----kMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~----i---P 506 (806)
|.+...|++++-|+. +==.+-+.|..|||||.-+|.|.--. ..+|+.-...+=+=...+++..+- + +
T Consensus 9 l~~~~~~~~vL~~Isl~i~~Gei~~liGpnGaGKSTLl~~i~G~~--~~~~~~G~i~~~G~~i~~~~~~~~~~~~~~~~~ 86 (250)
T 2d2e_A 9 LWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDP--EYTVERGEILLDGENILELSPDERARKGLFLAF 86 (250)
T ss_dssp EEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCT--TCEEEEEEEEETTEECTTSCHHHHHHTTBCCCC
T ss_pred EEEEECCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC--CCCCCCCEEEECCEECCCCCHHHHHHCCEEEEC
T ss_conf 999989989885307688799899998899988999999985487--787885189999999998999999975989986
Q ss_pred -HH-HCC--CCCCHHHHHHHHHHH----HHHHHHH-HHHH----------HHCCCCCHHHHHH-HHHHHHHCCCCCCCCC
Q ss_conf -43-122--334304566899999----9999999-9999----------8708996899999-9998874478667754
Q gi|254780799|r 507 -NL-LTP--VVTNPQKAVTVLKWL----VCEMEER-YQKM----------SKIGVRNIDGFNL-KVAQYHNTGKKFNRTV 566 (806)
Q Consensus 507 -HL-l~p--VvTd~~kA~~aL~w~----V~EMe~R-Y~l~----------a~~~vRni~~yN~-k~~~~~~~~~~~~~~~ 566 (806)
+- +.| .|-+.-......++. +.|+..| -+.+ ++.-..++.|=.+ |+.-|+.-
T Consensus 87 q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~LSGGqkQrv~iAraL-------- 158 (250)
T 2d2e_A 87 QYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLL-------- 158 (250)
T ss_dssp CCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHH--------
T ss_pred CCCHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCHHHHHHHHHHHHH--------
T ss_conf 272106887422666642333201120254699999999985399445660598724899999999999999--------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCCH--HHHHHHHHHHHHHHCCEEEEEEECCCC
Q ss_conf 4677654543222332232346986877634468888732100--588999999866414237999965777
Q gi|254780799|r 567 QTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVARKD--IESAVQRLAQMARASGIHVIMATQRPS 636 (806)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~lp~ivviiDElaDlmm~~~~~--ve~~i~rlaq~ara~GiHli~aTqrPs 636 (806)
-.=|. +++.||=. ++=| .+..|.++-+.-|..|+-.|+-|..+.
T Consensus 159 --------------------~~~P~-iliLDEPt-----sgLD~~~~~~i~~~l~~l~~~~~t~livtH~~~ 204 (250)
T 2d2e_A 159 --------------------VLEPT-YAVLDETD-----SGLDIDALKVVARGVNAMRGPNFGALVITHYQR 204 (250)
T ss_dssp --------------------HHCCS-EEEEECGG-----GTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG
T ss_pred --------------------HHCCC-EEEECCCC-----CCCCHHHHHHHHHHHHHHCCCCCCEEEEEECHH
T ss_conf --------------------71999-89976866-----558999999999998874256677999981478
No 181
>>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} (1:1-234)
Probab=71.14 E-value=2.9 Score=21.15 Aligned_cols=158 Identities=20% Similarity=0.267 Sum_probs=69.4
Q ss_pred CEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEE---EEECCCHHHHHHCC--CC---H--HHHCCCCC
Q ss_conf 667854100202355304774067999999999998299578478---88523100111027--70---3--43122334
Q gi|254780799|r 445 KPIIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRL---IMIDPKMLELSVYD--GI---P--NLLTPVVT 514 (806)
Q Consensus 445 ~pvv~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkl---iliDPK~vEls~Y~--~i---P--HLl~pVvT 514 (806)
+-+-.++.+-==+-|-|..|||||..+|.|- =|++-+--++.+ .+-|++.-.+..+. +| | +-|-|--|
T Consensus 20 ~~isl~i~~Ge~~~iiG~sGsGKSTll~~i~--gl~~p~~G~i~~~~~~i~~~~~~~~~~~~~~~ig~vfQ~~~L~~~lt 97 (234)
T 1g29_1 20 REMSLEVKDGEFMILLGPSGCGKTTTLRMIA--GLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMT 97 (234)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHH--TSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSC
T ss_pred CCCEEEECCCCEEEEECCCCCHHHHHHHHHH--CCCCCCCEEEEECCEECCCCCCCCCCCHHHCCCCCCCCCCCCCCCCC
T ss_conf 1707898899899999899972999999997--29999964999999998776401333301125542234665688885
Q ss_pred CHHHHHHHH---HHHHHHHHHHHHHH-HHCC--------CCCHHHHH-HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 304566899---99999999999999-8708--------99689999-99998874478667754467765454322233
Q gi|254780799|r 515 NPQKAVTVL---KWLVCEMEERYQKM-SKIG--------VRNIDGFN-LKVAQYHNTGKKFNRTVQTGFDRKTGEAIYET 581 (806)
Q Consensus 515 d~~kA~~aL---~w~V~EMe~RY~l~-a~~~--------vRni~~yN-~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (806)
=-...+..| +|--+|+++|-+.+ ...| ..++.|=. +|+.-|++-
T Consensus 98 v~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRv~iAraL----------------------- 154 (234)
T 1g29_1 98 VYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAI----------------------- 154 (234)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHH-----------------------
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHH-----------------------
T ss_conf 999999999984999999999999999877996786488434899999999999999-----------------------
Q ss_pred CCCCCCCCCEEEEEHHHHHHHH-HHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCC
Q ss_conf 2232346986877634468888-732100588999999866414237999965777
Q gi|254780799|r 582 EHFDFQHMPYIVVVIDEMADLM-MVARKDIESAVQRLAQMARASGIHVIMATQRPS 636 (806)
Q Consensus 582 ~~~~~~~lp~ivviiDElaDlm-m~~~~~ve~~i~rlaq~ara~GiHli~aTqrPs 636 (806)
-.=|- +++-||=.-=+ -...+++.+.|.+| .+--|+..|+.|....
T Consensus 155 -----~~~P~-illlDEPts~LD~~~~~~i~~~i~~l---~~~~g~tii~vtHd~~ 201 (234)
T 1g29_1 155 -----VRKPQ-VFLMDEPLSNLDAKLRVRMRAELKKL---QRQLGVTTIYVTHDQV 201 (234)
T ss_dssp -----HTCCS-EEEEECTTTTSCHHHHHHHHHHHHHH---HHHHTCEEEEEESCHH
T ss_pred -----HCCCC-EEEECCCCCCCCHHHHHHHHHHHHHH---HHHHCCEEEEEECCHH
T ss_conf -----66999-89985876557999999999999999---9971999999908999
No 182
>>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, structural genomics; 2.38A {Bacillus cereus atcc 10987} (A:1-118)
Probab=71.06 E-value=3.5 Score=20.53 Aligned_cols=59 Identities=15% Similarity=0.274 Sum_probs=49.2
Q ss_pred HHHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHH-HCCCCCEEEECHHH
Q ss_conf 999999996598500014222001177899999999977986802-27887267317125
Q gi|254780799|r 744 KQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPA-SSTGKREILISSME 802 (806)
Q Consensus 744 ~~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~-~g~~~r~vl~~~~~ 802 (806)
-.++.++...+..|.+-|-+++.+-=....|+++.||++|.|--. +..-.|.+++.-.+
T Consensus 36 ~~iL~~l~~~~~~t~~ela~~l~i~~~tvs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~ 95 (118)
T 3bja_A 36 FGVIQVLAKSGKVSXSKLIENXGCVPSNXTTXIQRXKRDGYVXTEKNPNDQRETLVYLTK 95 (118)
T ss_dssp HHHHHHHHHSCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCEEEEECCCCCCEEEEEECH
T ss_conf 999999998699899999998685746187999998431154876458888405888898
No 183
>>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} (B:1-148,B:349-443)
Probab=71.06 E-value=6.6 Score=18.47 Aligned_cols=98 Identities=18% Similarity=0.174 Sum_probs=50.1
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHHCCHH--------HEEEEEECCCHHHHHH-CCCCH-------HHHCCCCCCHH
Q ss_conf 20235530477406799999999999829957--------8478885231001110-27703-------43122334304
Q gi|254780799|r 454 MPHLLIAGTTGSGKSVAINTMILSLLYRMTPA--------QCRLIMIDPKMLELSV-YDGIP-------NLLTPVVTNPQ 517 (806)
Q Consensus 454 MPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~--------evkliliDPK~vEls~-Y~~iP-------HLl~pVvTd~~ 517 (806)
=+..+|-|-=|||||..+=..|..++.+..-. .-+.+++-|...-... -+.|. ....++-|...
T Consensus 16 ~~~~lI~G~pGTGKT~tl~~~i~~ll~~~~~~~~~~~~~~~~~IL~~t~tn~A~~~i~~rl~~~~~~~~~~~~~~~~~~~ 95 (243)
T 1w36_B 16 QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIHELRIACLRETTDNP 95 (243)
T ss_dssp SSCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSSCCCSH
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
T ss_conf 99979999373048899999999998417644334579996068675668899999999999999999973311333447
Q ss_pred HHHHHHHHH------HHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 566899999------9999999999987089968999999
Q gi|254780799|r 518 KAVTVLKWL------VCEMEERYQKMSKIGVRNIDGFNLK 551 (806)
Q Consensus 518 kA~~aL~w~------V~EMe~RY~l~a~~~vRni~~yN~k 551 (806)
.....+.+. ..+....-+.+.+.....+.+|=.+
T Consensus 96 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 135 (243)
T 1w36_B 96 LYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQR 135 (243)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHGGGCSEEEHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEHHHHHHH
T ss_conf 8999887412289999999999845477858749999999
No 184
>>3dhw_C Methionine import ATP-binding protein METN; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12} (C:1-245)
Probab=70.90 E-value=3.1 Score=20.95 Aligned_cols=160 Identities=21% Similarity=0.277 Sum_probs=78.1
Q ss_pred EECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHH------HHHH--------CCCCHHHHCCCCC
Q ss_conf 5410020235530477406799999999999829957847888523100------1110--------2770343122334
Q gi|254780799|r 449 ADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKML------ELSV--------YDGIPNLLTPVVT 514 (806)
Q Consensus 449 ~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~v------Els~--------Y~~iPHLl~pVvT 514 (806)
.++.+===+-|.|..|||||.-+++|-. | .+|++=+ |++|=|-+ |+.- |.+ ++ |-|--|
T Consensus 26 l~i~~GE~~~iiG~SGsGKSTLl~~i~g--l--~~p~~G~-i~~~g~~i~~~~~~~~~~~rr~ig~vfQ~-~~-l~~~~t 98 (245)
T 3dhw_C 26 LHVPAGQIYGVIGASGAGKSTLIRCVNL--L--ERPTEGS-VLVDGQELTTLSESELTKARRQIGMIFQH-FN-LLSSRT 98 (245)
T ss_dssp EEECSSCEEEEEESTTSSHHHHHHHHTT--S--SCCSEEE-EEETTEEECTTCHHHHHHHHHHEEECCSS-CC-CCTTSB
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHC--C--CCCCCEE-EEECCEECCCCCHHHHHHHHCCCCEEEEC-CC-CCCCCH
T ss_conf 8988998999999999869999999965--9--9999738-99999984558702216775165138403-00-178701
Q ss_pred CHHHHHHHHHHH---HHHHHHHH-HHHHHCCCC--------CHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 304566899999---99999999-999870899--------68999-999998874478667754467765454322233
Q gi|254780799|r 515 NPQKAVTVLKWL---VCEMEERY-QKMSKIGVR--------NIDGF-NLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYET 581 (806)
Q Consensus 515 d~~kA~~aL~w~---V~EMe~RY-~l~a~~~vR--------ni~~y-N~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (806)
=-......|++. -.|+++|- ++|...|.- .+.|= -+|+.-|++-
T Consensus 99 v~eni~~~l~~~~~~~~e~~~~v~~~L~~vgL~~~~~~~p~~LSGGq~QRvaIARaL----------------------- 155 (245)
T 3dhw_C 99 VFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARAL----------------------- 155 (245)
T ss_dssp HHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHH-----------------------
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHH-----------------------
T ss_conf 788998899884999899999999999876993576569641898885899998876-----------------------
Q ss_pred CCCCCCCCCEEEEEHHH-HHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHCCCCEEEE
Q ss_conf 22323469868776344-68888732100588999999866414237999965777535543554110251587
Q gi|254780799|r 582 EHFDFQHMPYIVVVIDE-MADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRISF 654 (806)
Q Consensus 582 ~~~~~~~lp~ivviiDE-laDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPsvdvitg~ikan~p~riaf 654 (806)
-.=| -|++.|| .+-|=..+.++|-+.|.+|.+ --|+-.|+.|....+ =+.+..||++
T Consensus 156 -----~~~P-~ill~DEPts~LD~~~~~~i~~ll~~l~~---~~g~tii~vTHdl~~-------~~~~adrv~v 213 (245)
T 3dhw_C 156 -----ASNP-KVLLCDEATSALDPATTRSILELLKDINR---RLGLTILLITHEMDV-------VKRICDCVAV 213 (245)
T ss_dssp -----HTCC-SEEEEESGGGSSCHHHHHHHHHHHHHHHH---HHCCEEEEEBSCHHH-------HHHHCSEEEE
T ss_pred -----HCCC-CEEEECCCCCCCCHHHHHHHHHHHHHHHH---HCCCEEEEECCCHHH-------HHHHCCEEEE
T ss_conf -----2399-78985476565898899999999999987---139869999189999-------9986999999
No 185
>>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} (A:)
Probab=70.86 E-value=3.6 Score=20.42 Aligned_cols=48 Identities=21% Similarity=0.411 Sum_probs=32.1
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHH----------EEEEEECCCHHHHHHCCC
Q ss_conf 0202355304774067999999999998299578----------478885231001110277
Q gi|254780799|r 453 RMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQ----------CRLIMIDPKMLELSVYDG 504 (806)
Q Consensus 453 kMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~e----------vkliliDPK~vEls~Y~~ 504 (806)
+++.+++-|..|+|||--||.+.- ...+++ .+.+.++-+.+.+.+++.
T Consensus 2 ~~~ki~ivG~~~~GKTsli~~l~~----~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~ 59 (170)
T 1g16_A 2 SIXKILLIGDSGVGKSCLLVRFVE----DKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDT 59 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHH----CCCCC-------CCEEEEEEESSSCEEEEEEECC
T ss_pred CEEEEEEECCCCCCHHHHHHHHHC----CCCCCCCCCEEEEECCEEEEEECCCEEEEEEEEC
T ss_conf 379999999999799999999975----9887430770565301269997680799998732
No 186
>>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase; HET: T5A; 1.98A {Escherichia coli} (A:)
Probab=70.80 E-value=4.2 Score=19.94 Aligned_cols=31 Identities=26% Similarity=0.335 Sum_probs=22.8
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCHHHE
Q ss_conf 3553047740679999999999982995784
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMILSLLYRMTPAQC 487 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~SlLyk~~P~ev 487 (806)
..|.|.+|||||-..+.+--.|=...-+..+
T Consensus 6 I~i~G~~GsGKsT~~~~L~~~l~~~~~~~~~ 36 (213)
T 4tmk_A 6 IVIEGLEGAGKTTARNVVVETLEQLGIRDMV 36 (213)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 9998998886999999999999867998499
No 187
>>1qzx_A SRP54, signal recognition 54 kDa protein; signal recognition particle, protein targeting, signaling protein; 4.00A {Sulfolobus solfataricus} (A:98-290)
Probab=70.64 E-value=5.5 Score=19.03 Aligned_cols=75 Identities=15% Similarity=0.076 Sum_probs=42.5
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHH----HHCCCCHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 023553047740679999999999982995784788852310011----1027703431223343045668999999999
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLEL----SVYDGIPNLLTPVVTNPQKAVTVLKWLVCEM 530 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEl----s~Y~~iPHLl~pVvTd~~kA~~aL~w~V~EM 530 (806)
|=+++.|-+|||||--++.+...| +..-..|.+|-.|+=+.-+ ..|...+.......-.......+++-++.-+
T Consensus 8 ~vi~itG~~GsGKTT~~~~L~~~l--~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (193)
T 1qzx_A 8 FIIMLVGVQGSGKTTTAGKLAYFY--KKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 85 (193)
T ss_dssp EEEEEECSSSSSTTTHHHHHHHHH--HHTTCCEEEEECCTTSTHHHHHHHHHHHHTTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCCCCHHHHHHHHH--HHCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 599997577888420499999999--865983047742655754788899997037714731555567788999999987
Q ss_pred H
Q ss_conf 9
Q gi|254780799|r 531 E 531 (806)
Q Consensus 531 e 531 (806)
+
T Consensus 86 ~ 86 (193)
T 1qzx_A 86 V 86 (193)
T ss_dssp H
T ss_pred H
T ss_conf 5
No 188
>>2awn_A Maltose/maltodextrin import ATP-binding protein MALK; ATP-binding cassette, transport protein; HET: ADP; 2.30A {Escherichia coli K12} (A:1-236)
Probab=70.62 E-value=3.8 Score=20.25 Aligned_cols=164 Identities=16% Similarity=0.185 Sum_probs=77.5
Q ss_pred CCHHHCCCCCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHC-CHHHEEEEEECCCHHH-HHH---------
Q ss_conf 00021045666666785410020235530477406799999999999829-9578478885231001-110---------
Q gi|254780799|r 433 DLAINLGKSIEGKPIIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRM-TPAQCRLIMIDPKMLE-LSV--------- 501 (806)
Q Consensus 433 ~L~iaLGKdI~G~pvv~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~-~P~evkliliDPK~vE-ls~--------- 501 (806)
.|+..-|+-..=+.+-.++.+==.+-+.|-.|||||-.+++| ... +|+.= =|.+|.+.+. .+.
T Consensus 8 nls~~yg~~~~l~dvsl~i~~Gei~~iiG~nGaGKSTLl~~l-----~Gl~~~~~G-~I~~~~~~~~~~~~~~r~ig~v~ 81 (236)
T 2awn_A 8 NVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMI-----AGLETITSG-DLFIGEKRMNDTPPAERGVGMVF 81 (236)
T ss_dssp EEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHH-----HTSSCCSEE-EEEESSSCCTTSCGGGTCEEEEC
T ss_pred EEEEEECCEEEECCCEEEECCCCEEEEECCCCCHHHHHHHHH-----HCCCCCCCE-EEEECCEECCCCCHHHCCEEEEC
T ss_conf 799999999998553879889989999999998399999999-----759998833-99999999999997896358862
Q ss_pred --CCCCHHHHC-CCCCCHHHHHHHHHHHHHHHHHHHHHHH---------HCCCCCHHHHHH-HHHHHHHCCCCCCCCCCC
Q ss_conf --277034312-2334304566899999999999999998---------708996899999-999887447866775446
Q gi|254780799|r 502 --YDGIPNLLT-PVVTNPQKAVTVLKWLVCEMEERYQKMS---------KIGVRNIDGFNL-KVAQYHNTGKKFNRTVQT 568 (806)
Q Consensus 502 --Y~~iPHLl~-pVvTd~~kA~~aL~w~V~EMe~RY~l~a---------~~~vRni~~yN~-k~~~~~~~~~~~~~~~~~ 568 (806)
|+-.||+-. --|..+-+ .-..--+|+++|.+-+. .-.++++.|=++ |+.-|++-
T Consensus 82 Q~~~l~~~ltv~eni~~~l~---~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~LSGGqkQRv~iAral---------- 148 (236)
T 2awn_A 82 QSYALYPHLSVAENMSFGLK---LAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTL---------- 148 (236)
T ss_dssp SSCCC------------------------CHHHHHHHHHHHHC---------------------CHHHHH----------
T ss_pred CCCCCCCCCCCEEEEEEHHH---HCCCCHHHHHHHHHHHHHHHCCCCHHHCCHHHCCHHHHHHHHHHHHH----------
T ss_conf 45567866010028987033---15999899999999999760782211099236999999999999998----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCC
Q ss_conf 77654543222332232346986877634468888732100588999999866414237999965777
Q gi|254780799|r 569 GFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPS 636 (806)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~lp~ivviiDElaDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPs 636 (806)
-.=|- +++-||=-==+ -+...+.....|.+..+..|+-+|++|+...
T Consensus 149 ------------------~~~P~-illlDEPT~gL--D~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~ 195 (236)
T 2awn_A 149 ------------------VAEPS-VFLLDEPLSNL--DAALRVQMRIEISRLHKRLGRTMIYVTHDQV 195 (236)
T ss_dssp ------------------HTCCS-EEEEESTTTTS--CHHHHHHHHHHHHHHHHHSCCEEEEEESCHH
T ss_pred ------------------HCCCC-EEEECCCCCCC--CHHHHHHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf ------------------40998-89966986546--9899999999999988861976999936888
No 189
>>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structural genomics, protein structure initiative; HET: GOL; 2.00A {Rhodococcus jostii RHA1} (A:1-124)
Probab=70.42 E-value=4.2 Score=19.90 Aligned_cols=58 Identities=14% Similarity=0.334 Sum_probs=45.8
Q ss_pred HHHHHHHHCCC-EEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHC-CCCCEEEECHHH
Q ss_conf 99999996598-50001422200117789999999997798680227-887267317125
Q gi|254780799|r 745 QAVDIVLRDNK-ASISYIQRRLGIGYNRAASIIENMEEKGVIGPASS-TGKREILISSME 802 (806)
Q Consensus 745 ~a~~~v~~~~~-~s~s~lqr~~~igy~raar~~~~~e~~giv~~~~g-~~~r~vl~~~~~ 802 (806)
.++.++...+. .+.+-|.+++.+-.+-+.|+++.||++|.|--... ...|.+++.-.+
T Consensus 43 ~iL~~l~~~~~~~t~~ela~~~~~~~~~vs~~i~~L~~~glI~r~~~~~D~R~~~i~LT~ 102 (124)
T 3fm5_A 43 SVLVLACEQAEGVNQRGVAATXGLDPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATE 102 (124)
T ss_dssp HHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC-----------CEECH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEEECH
T ss_conf 999999985989899999999788777788999999986985651488767746878898
No 190
>>3bdd_A Regulatory protein MARR; ZP_00875883.1, putative multiple antibiotic-resistance repressor (MARR), structural genomics; 2.20A {Streptococcus suis 89} (A:30-102)
Probab=70.29 E-value=6.4 Score=18.53 Aligned_cols=58 Identities=24% Similarity=0.320 Sum_probs=47.5
Q ss_pred HHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHC-CCCCEEEECHHH
Q ss_conf 9999999659850001422200117789999999997798680227-887267317125
Q gi|254780799|r 745 QAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPASS-TGKREILISSME 802 (806)
Q Consensus 745 ~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~~g-~~~r~vl~~~~~ 802 (806)
.++.++.+.+-.+.+-|-.++.+-=+-+.|+++.||++|+|--... ...|.+++.-.+
T Consensus 6 ~iL~~l~~~~~~~~~~la~~~~~~~stvs~~i~~L~~~g~I~r~~~~~D~R~~~l~LT~ 64 (73)
T 3bdd_A 6 SILQTLLKDAPLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTE 64 (73)
T ss_dssp HHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEECCCCH
T ss_conf 99999998699899999999871575899999999977880325289999841012789
No 191
>>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* (A:1-262)
Probab=70.17 E-value=6 Score=18.74 Aligned_cols=33 Identities=21% Similarity=0.254 Sum_probs=27.2
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 100202355304774067999999999998299
Q gi|254780799|r 451 LARMPHLLIAGTTGSGKSVAINTMILSLLYRMT 483 (806)
Q Consensus 451 LakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~ 483 (806)
..+..++|+-|.+|+|||-..++|.-.+..+..
T Consensus 127 ~~~~~~~ll~GppGtGKT~La~aia~~~~~~~~ 159 (262)
T 2z4s_A 127 PGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEP 159 (262)
T ss_dssp TTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 687785699768775615999999999985198
No 192
>>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} (A:1-135,A:241-322)
Probab=70.10 E-value=2.1 Score=22.22 Aligned_cols=27 Identities=30% Similarity=0.311 Sum_probs=12.9
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHC
Q ss_conf 235530477406799999999999829
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRM 482 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~ 482 (806)
+--|-|-||||||-.+-+|-.-+=.|+
T Consensus 26 ~t~i~GpNGsGKSnlldAl~~~lG~~s 52 (217)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIKWVFGEQS 52 (217)
T ss_dssp EEEEECCTTTCSTHHHHHHHHTSCC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 899994499989999999999856765
No 193
>>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural genomics consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} (A:)
Probab=70.03 E-value=4.9 Score=19.43 Aligned_cols=41 Identities=34% Similarity=0.471 Sum_probs=30.0
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCH
Q ss_conf 23553047740679999999999982995784788852310
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKM 496 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~ 496 (806)
|+++.--|||||.-|----++.-+.......++-+.+=|-+
T Consensus 68 Dvi~~A~TGSGKTlaflip~l~~~~~~~~~~~~alIl~PTr 108 (245)
T 3dkp_A 68 ELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTR 108 (245)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSH
T ss_pred CEEEEECCCCCEEEEEEEHHHHHHHHCCCCCCEEEEECCCC
T ss_conf 77998035543366651056654232047883599956874
No 194
>>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} (A:)
Probab=70.01 E-value=2 Score=22.40 Aligned_cols=167 Identities=16% Similarity=0.101 Sum_probs=67.7
Q ss_pred EEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHCCCCEEEEEECC----CCCCHHHCCC
Q ss_conf 776344688887321005889999998664142379999657775355435541102515876458----6642123388
Q gi|254780799|r 593 VVVIDEMADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRISFQVSS----KIDSRTILGE 668 (806)
Q Consensus 593 vviiDElaDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPsvdvitg~ikan~p~riaf~v~s----~~dSrtild~ 668 (806)
.+|+||.-.+...... ......+.++-...-+.+.-||.-|++.-..... .+.|..+--.... ........-.
T Consensus 165 ~iViDE~h~~~~~~~~--~~~~~~~~~~~~~~~~~~~sat~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (394)
T 1fuu_A 165 XFILDEADEXLSSGFK--EQIYQIFTLLPPTTQVVLLSATXPNDVLEVTTKF-XRNPVRILVKKDELTLEGIKQFYVNVE 241 (394)
T ss_dssp EEEEETHHHHHHTTCH--HHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHH-CCSCEEEEECC----------------
T ss_pred EEEEEHHHHHCCCCCC--CHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHH-CCCCCEEEECCCCCCCCCCEEECCCCC
T ss_conf 5642044432035765--1022210136642200122013423788777763-378715850465555421000000022
Q ss_pred CCHHHHCCCCCEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCC-C-CCCCCCC--------CCCCCC----CCCC
Q ss_conf 645786588754773689832588833489889999999997128974-2-1100124--------556667----7888
Q gi|254780799|r 669 QGAEQLLGQGDMLYMTGGGRVQRIHGPFVSDIEVEKVVSHLKTQGEAK-Y-IDIKDKI--------LLNEEM----RFSE 734 (806)
Q Consensus 669 ~gae~Llg~gdml~~~~~~~~~r~~g~~v~~~ev~~v~~~~~~q~~~~-y-~~~~~~~--------~~~~~~----~~~~ 734 (806)
.-.+++-=-=+.+-.. ...++==-+-+-++++.+.++++.++-+. + ....... ..++.. ..+.
T Consensus 242 ~~~~k~~~l~~~l~~~---~~~~~lIf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~iLvaT~~ 318 (394)
T 1fuu_A 242 EEEYKYECLTDLYDSI---SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIXKEFRSGSSRILISTDL 318 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHCC---CCCEEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCH
T ss_conf 5777776655543024---5531477741035555577776430244434332135778899998873278640354113
Q ss_pred CCCCCCHHHHHHHHHHHHCCC--EEEEHHHHHHCCC
Q ss_conf 887777038999999996598--5000142220011
Q gi|254780799|r 735 NSSVADDLYKQAVDIVLRDNK--ASISYIQRRLGIG 768 (806)
Q Consensus 735 ~~~~~d~l~~~a~~~v~~~~~--~s~s~lqr~~~ig 768 (806)
.+..-| =..+++|+.-.- -..+++||.=|.|
T Consensus 319 ~~~Gid---i~~v~~VI~~~~p~~~~~~~qr~GR~g 351 (394)
T 1fuu_A 319 LARGID---VQQVSLVINYDLPANKENYIHRIGRGG 351 (394)
T ss_dssp ------------------------------------
T ss_pred HHCCCC---CCCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 324567---668888999699989999998850556
No 195
>>2dbb_A Putative HTH-type transcriptional regulator PH0061; ASNC family, helix-turn-helix (HTH) domain, structural genomics, NPPSFA; 2.00A {Pyrococcus horikoshii OT3} (A:1-58)
Probab=69.88 E-value=6.9 Score=18.29 Aligned_cols=50 Identities=20% Similarity=0.262 Sum_probs=45.3
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCH
Q ss_conf 77703899999999659850001422200117789999999997798680
Q gi|254780799|r 738 VADDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGP 787 (806)
Q Consensus 738 ~~d~l~~~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~ 787 (806)
..|++-.+-+++..+..+.|.+-|-+++.+-=.-..|-|..||+.|++--
T Consensus 6 ~ld~~D~~Il~~L~~~~r~s~~ela~~lgis~~tv~~ri~~L~~~GvI~~ 55 (58)
T 2dbb_A 6 KLDRVDMQLVKILSENSRLTYRELADILNTTRQRIARRIDKLKKLGIIRK 55 (58)
T ss_dssp CCCHHHHHHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCEE
T ss_conf 76099999999998859999999999989699999999999840552103
No 196
>>2vsf_A XPD, DNA repair helicase RAD3 related protein; NER, TFIIH, hydrolase, ATP-binding, nucleotide-binding, iron sulfur cluster; HET: DNA; 2.9A {Thermoplasma acidophilum} (A:1-196,A:353-390)
Probab=69.88 E-value=2 Score=22.39 Aligned_cols=49 Identities=18% Similarity=0.251 Sum_probs=34.6
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCH-HHHHHCCCCHH
Q ss_conf 23553047740679999999999982995784788852310-01110277034
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKM-LELSVYDGIPN 507 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~-vEls~Y~~iPH 507 (806)
+++|.--|||||+.| .++.+|.+......|.+.+=|-+ +=-.+|+.+.-
T Consensus 6 d~ii~ApTGsGKTla---yLlp~l~~l~~~~~k~iIltPT~~L~~Qi~~~~~k 55 (234)
T 2vsf_A 6 GVALESPTGSGKTIM---ALKSALQYSSERKLKVLYLVRTNSQEEQVIKELRS 55 (234)
T ss_dssp EEEECCCSSSSTTHH---HHHTTCSSTTTTSCEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEECCCHHHHHHH---HHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHH
T ss_conf 589988876889999---99999999997699199986679999999999987
No 197
>>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} (A:)
Probab=69.68 E-value=1.9 Score=22.56 Aligned_cols=26 Identities=31% Similarity=0.374 Sum_probs=22.0
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 00202355304774067999999999
Q gi|254780799|r 452 ARMPHLLIAGTTGSGKSVAINTMILS 477 (806)
Q Consensus 452 akMPHLLIAGtTGSGKSV~iN~iI~S 477 (806)
.+++.+.|.|.+|+|||--+|++.-.
T Consensus 24 ~~~~kI~iiG~~~vGKSSLi~~l~~~ 49 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 67978999999999899999998489
No 198
>>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} (A:1-181)
Probab=69.53 E-value=3.9 Score=20.14 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=23.1
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 100202355304774067999999999
Q gi|254780799|r 451 LARMPHLLIAGTTGSGKSVAINTMILS 477 (806)
Q Consensus 451 LakMPHLLIAGtTGSGKSV~iN~iI~S 477 (806)
=.+.|.+.+-|-+|+|||--+|+++-.
T Consensus 5 ~~~~~~i~iiG~~nvGKSSLin~l~~~ 31 (181)
T 1ega_A 5 KSYCGFIAIVGRPNVGKSTLLNKLLGQ 31 (181)
T ss_dssp CCEEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 726748999989998299999999589
No 199
>>1twf_K B13.6, DNA-directed RNA polymerase II 13.6 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} (K:)
Probab=69.35 E-value=3.9 Score=20.16 Aligned_cols=44 Identities=14% Similarity=0.207 Sum_probs=33.2
Q ss_pred CCCHHHHHHCCCCHHHHCC-----CCCCHH-HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2310011102770343122-----334304-566899999999999999998
Q gi|254780799|r 493 DPKMLELSVYDGIPNLLTP-----VVTNPQ-KAVTVLKWLVCEMEERYQKMS 538 (806)
Q Consensus 493 DPK~vEls~Y~~iPHLl~p-----VvTd~~-kA~~aL~w~V~EMe~RY~l~a 538 (806)
||. |+++.|. |||=+.+ |-|+.. .+..||++++..+..-++.+.
T Consensus 53 ~p~-V~fagY~-ipHPl~~~~~lrIqT~~~~~p~eal~~a~~~l~~~~~~l~ 102 (120)
T 1twf_K 53 DRK-VLFAAYK-VEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALK 102 (120)
T ss_dssp CTT-EEEEEEE-CSCTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC-CEEEEEC-CCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 998-3386641-6888888038999969999999999999999999999999
No 200
>>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} (A:146-331)
Probab=69.11 E-value=4.8 Score=19.49 Aligned_cols=49 Identities=12% Similarity=0.160 Sum_probs=36.5
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHHHH---CCHHHEEEEEECCCHHHH
Q ss_conf 1002023553047740679999999999982---995784788852310011
Q gi|254780799|r 451 LARMPHLLIAGTTGSGKSVAINTMILSLLYR---MTPAQCRLIMIDPKMLEL 499 (806)
Q Consensus 451 LakMPHLLIAGtTGSGKSV~iN~iI~SlLyk---~~P~evkliliDPK~vEl 499 (806)
....||+|.-|--|.|||....++--.+-.. ....++....++.-..++
T Consensus 43 ~~~~~~~Ll~GpPGtGKT~laralA~~l~~~~~~~~~~~~~~~~~~~~~~~~ 94 (186)
T 1qvr_A 43 RRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA 94 (186)
T ss_dssp CSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----
T ss_pred CCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCHHHCCCCEEEECHHHHHC
T ss_conf 2578880797788741509999999999856999577377437622656743
No 201
>>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} (A:5-221)
Probab=69.00 E-value=4 Score=20.08 Aligned_cols=38 Identities=11% Similarity=0.167 Sum_probs=29.8
Q ss_pred CCCCCEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEE
Q ss_conf 3469868776344688887321005889999998664142379999
Q gi|254780799|r 586 FQHMPYIVVVIDEMADLMMVARKDIESAVQRLAQMARASGIHVIMA 631 (806)
Q Consensus 586 ~~~lp~ivviiDElaDlmm~~~~~ve~~i~rlaq~ara~GiHli~a 631 (806)
++..=.+|+||| |...++..-.++.+.+|..|+..|++
T Consensus 87 l~~~D~~i~VvD--------a~~g~~~~~~~~~~~l~~~~~p~ilv 124 (217)
T 1g7s_A 87 GALADLAILIVD--------INEGFKPQTQEALNILRMYRTPFVVA 124 (217)
T ss_dssp SBSCSEEEEEEE--------TTTCCCHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHCCEEEEEEE--------CCCCCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 987899999998--------99997779999999998749986999
No 202
>>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} (A:28-114)
Probab=68.96 E-value=6.4 Score=18.56 Aligned_cols=57 Identities=19% Similarity=0.152 Sum_probs=47.1
Q ss_pred HHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHH-HCCCCCEEEECHH
Q ss_conf 99999996598500014222001177899999999977986802-2788726731712
Q gi|254780799|r 745 QAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPA-SSTGKREILISSM 801 (806)
Q Consensus 745 ~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~-~g~~~r~vl~~~~ 801 (806)
.++.++...+-.+.+-|.+.+.+-=.-..|+++.||++|+|--. +...+|.+++.-.
T Consensus 6 ~iL~~l~~~~~~t~~~la~~l~~~~~~vs~~v~~L~~~g~i~~~~~~~D~R~~~i~lT 63 (87)
T 1lj9_A 6 LYLVRVCENPGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYAT 63 (87)
T ss_dssp HHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEEC
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEEEC
T ss_conf 9999998389979999999989788589999999998899630679999891144789
No 203
>>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} (A:324-582)
Probab=68.93 E-value=3 Score=21.05 Aligned_cols=48 Identities=23% Similarity=0.421 Sum_probs=28.8
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHC---------------CHHHEE----EEEECCCHHHHHHCCCC
Q ss_conf 235530477406799999999999829---------------957847----88852310011102770
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRM---------------TPAQCR----LIMIDPKMLELSVYDGI 505 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~---------------~P~evk----liliDPK~vEls~Y~~i 505 (806)
-.-|-|.+|||||--++.|.- +|+. ++.++| ++.=||-...-++++.|
T Consensus 48 ~~aivG~sGsGKSTLl~~l~g--l~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni 114 (259)
T 3b5x_A 48 TVALVGRSGSGKSTIANLFTR--FYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNI 114 (259)
T ss_pred EEEEECCCCCCHHHHHHHHHC--CCCCCCCCEEECCEEHHHCCHHHHHHHEEEEEECCEECCCCCCCCC
T ss_conf 999999999869999999863--4646789752898876648999998526998130111367432110
No 204
>>3h0g_K DNA-directed RNA polymerase II subunit RPB11; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} (K:)
Probab=68.83 E-value=4.6 Score=19.61 Aligned_cols=53 Identities=15% Similarity=0.172 Sum_probs=40.7
Q ss_pred CCCHHHHHHCCCCHHHHCC-----CCCCHH-HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 2310011102770343122-----334304-5668999999999999999987089968999999998
Q gi|254780799|r 493 DPKMLELSVYDGIPNLLTP-----VVTNPQ-KAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQ 554 (806)
Q Consensus 493 DPK~vEls~Y~~iPHLl~p-----VvTd~~-kA~~aL~w~V~EMe~RY~l~a~~~vRni~~yN~k~~~ 554 (806)
||. |+++.|. |||=+.+ |-|+.. .+..||+++++.....++.|. +.|++.+++
T Consensus 52 ~p~-V~fagY~-ipHPl~~~~~lrIqT~~~~~p~~al~~A~~~l~~~~~~l~-------~~f~~~~~~ 110 (123)
T 3h0g_K 52 DER-VLFAGYK-VPHPLNHNFILRVQTVEDCSPKQVIVDAAKSLITHLEEIK-------VNFMREWEL 110 (123)
T ss_dssp STT-CSCBCCB-CSCTTSCEEEEEEECCSSSCSHHHHHHHHHHHHHHHHHHH-------HHHHHHTTT
T ss_pred CCC-CEEEEEE-CCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
T ss_conf 998-2498876-7899878207999969999999999999999999999999-------999999853
No 205
>>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural genomics consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} (A:1-245)
Probab=68.78 E-value=4.3 Score=19.88 Aligned_cols=30 Identities=40% Similarity=0.538 Sum_probs=24.1
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHCCH
Q ss_conf 023553047740679999999999982995
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTMILSLLYRMTP 484 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~iI~SlLyk~~P 484 (806)
.|++++.-|||||+.|-=-=+++-+++..+
T Consensus 53 ~dvi~~a~TGsGKTlayllp~l~~i~~~~~ 82 (245)
T 2i4i_A 53 RDLMACAQTGSGKTAAFLLPILSQIYSDGP 82 (245)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHHHCC
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 989998589947999999999999874175
No 206
>>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* (A:1-274,A:390-440)
Probab=68.64 E-value=3.6 Score=20.45 Aligned_cols=14 Identities=36% Similarity=0.484 Sum_probs=5.8
Q ss_pred EEEEECCCCHHHHH
Q ss_conf 35530477406799
Q gi|254780799|r 457 LLIAGTTGSGKSVA 470 (806)
Q Consensus 457 LLIAGtTGSGKSV~ 470 (806)
.++...|||||+.|
T Consensus 91 ~iv~~~TGsGKTlv 104 (325)
T 3jux_A 91 KVAEMKTGEGKTLA 104 (325)
T ss_dssp CEEECCTTSCHHHH
T ss_pred CEEEEECCCCHHHH
T ss_conf 43334368979999
No 207
>>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* (A:1-70,A:135-245)
Probab=68.56 E-value=3.5 Score=20.49 Aligned_cols=49 Identities=20% Similarity=0.356 Sum_probs=32.2
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHH--CCHHHEEEEEECCCHHHHHHCCCC
Q ss_conf 3553047740679999999999982--995784788852310011102770
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMILSLLYR--MTPAQCRLIMIDPKMLELSVYDGI 505 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~SlLyk--~~P~evkliliDPK~vEls~Y~~i 505 (806)
..|+|.+|||||.--..|.--+=++ ...+..+..|---+-.+.=+-||+
T Consensus 28 i~i~G~~gsGKsT~a~~l~~~~~~~~~~~~~~~~~~~~~d~~~diiIiEG~ 78 (181)
T 2jeo_A 28 IGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYDVVLFEGI 78 (181)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBSEEEEECT
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECCCCCEEEEECCCCCCCCCCCCCH
T ss_conf 997899866499999999999685722678605899727741021100112
No 208
>>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} (A:1-224)
Probab=68.51 E-value=5.5 Score=19.06 Aligned_cols=147 Identities=19% Similarity=0.299 Sum_probs=69.6
Q ss_pred EEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHC-CHHHEEEEEECCCHHH-HHHC-----------CCCHHHH---
Q ss_conf 6785410020235530477406799999999999829-9578478885231001-1102-----------7703431---
Q gi|254780799|r 446 PIIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRM-TPAQCRLIMIDPKMLE-LSVY-----------DGIPNLL--- 509 (806)
Q Consensus 446 pvv~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~-~P~evkliliDPK~vE-ls~Y-----------~~iPHLl--- 509 (806)
.+-.++.+==-+-|.|..|||||..+|.| ... +|++=+ |.+|=|-+. ++.. +=.||+=
T Consensus 18 ~vsl~i~~Ge~~~iiG~sGsGKSTLl~~l-----~Gl~~p~~G~-i~~~G~di~~~~~~~r~i~~v~Q~~~l~p~ltV~e 91 (224)
T 3d31_A 18 NLSLKVESGEYFVILGPTGAGKTLFLELI-----AGFHVPDSGR-ILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKK 91 (224)
T ss_dssp EEEEEECTTCEEEEECCCTHHHHHHHHHH-----HTSSCCSEEE-EEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHH
T ss_pred CCEEEECCCCEEEEECCCCCHHHHHHHHH-----HCCCCCCCEE-EEECCEECCCCCHHHCCEEEECCCCCCCCCCCHHH
T ss_conf 20889999989999999998399999999-----7598898559-99999999999979919599956885589989999
Q ss_pred -------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH-HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -------2233430456689999999999999999870899689999-99998874478667754467765454322233
Q gi|254780799|r 510 -------TPVVTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFN-LKVAQYHNTGKKFNRTVQTGFDRKTGEAIYET 581 (806)
Q Consensus 510 -------~pVvTd~~kA~~aL~w~V~EMe~RY~l~a~~~vRni~~yN-~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (806)
..=+-+++++...++++ ..+-+.+-...++.|=+ +|+.-|++-
T Consensus 92 nl~~~~~~~~~~~~~~~~e~~~~~------~l~~~~~~~~~~LSGGq~QRv~iAraL----------------------- 142 (224)
T 3d31_A 92 NLEFGMRMKKIKDPKRVLDTARDL------KIEHLLDRNPLTLSGGEQQRVALARAL----------------------- 142 (224)
T ss_dssp HHHHHHHHHCCCCHHHHHHHHHHT------TCTTTTTSCGGGSCHHHHHHHHHHHHT-----------------------
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHC------CCHHHHHCCHHHHCCCCCCHHHHHHHH-----------------------
T ss_conf 999887515532789999999882------985466168145152604059899988-----------------------
Q ss_pred CCCCCCCCCEEEEEHHHH-HHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCC
Q ss_conf 223234698687763446-8888732100588999999866414237999965777
Q gi|254780799|r 582 EHFDFQHMPYIVVVIDEM-ADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPS 636 (806)
Q Consensus 582 ~~~~~~~lp~ivviiDEl-aDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPs 636 (806)
-.-|- |++.||= +-|= ++..+....-|.+..|.-|+-.|+.|+...
T Consensus 143 -----~~~P~-iLllDEPt~~LD---~~~~~~i~~~l~~l~~~~~~tii~vtHd~~ 189 (224)
T 3d31_A 143 -----VTNPK-ILLLDEPLSALD---PRTQENAREMLSVLHKKNKLTVLHITHDQT 189 (224)
T ss_dssp -----TSCCS-EEEEESSSTTSC---HHHHHHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred -----HCCCC-EEEECCCCCCCC---HHHHHHHHHHHHHHHHHCCCEEEEECCCHH
T ss_conf -----66999-999879865689---999999999999999837989999938699
No 209
>>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate acceptor; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* (A:1-167)
Probab=68.48 E-value=3.1 Score=20.87 Aligned_cols=43 Identities=23% Similarity=0.295 Sum_probs=30.0
Q ss_pred ECCCCCEE-EEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCH
Q ss_conf 41002023-553047740679999999999982995784788852310
Q gi|254780799|r 450 DLARMPHL-LIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKM 496 (806)
Q Consensus 450 DLakMPHL-LIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~ 496 (806)
-..+|..+ +|-|.-|||||-- +.-++++..-..-|-+.|.|..
T Consensus 23 ~~~~~~~l~~i~G~mgsGKTt~----L~~~~~~~~~~~~kv~ii~p~~ 66 (167)
T 2j9r_A 23 LINQNGWIEVICGSMFSGKSEE----LIRRVRRTQFAKQHAIVFKPCI 66 (167)
T ss_dssp CCCCSCEEEEEECSTTSCHHHH----HHHHHHHHHHTTCCEEEEECC-
T ss_pred ECCCCCEEEEEEECCCCHHHHH----HHHHHHHHHHCCCEEEEEEECH
T ss_conf 6158837999990507889999----9999999998799099980416
No 210
>>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} (A:)
Probab=68.46 E-value=4.3 Score=19.88 Aligned_cols=55 Identities=16% Similarity=0.305 Sum_probs=33.7
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHH-HE--EEEEECCCHHHHHHCCCCH
Q ss_conf 0020235530477406799999999999829957-84--7888523100111027703
Q gi|254780799|r 452 ARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPA-QC--RLIMIDPKMLELSVYDGIP 506 (806)
Q Consensus 452 akMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~-ev--kliliDPK~vEls~Y~~iP 506 (806)
.|..+++|.|..|+|||-.||.++.+=.....+. .. .-+-.+...+++....|..
T Consensus 5 ~~~~kI~iiG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~ 62 (171)
T 1upt_A 5 TREXRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLT 62 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCEECCCCEEEEEECCCCEEEEEECCCCCC
T ss_conf 7324899999999759999999957987611333220134440463899984044311
No 211
>>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structural genomics; 1.99A {Neisseria meningitidis MC58} PDB: 2p6s_A 2p6t_A (A:1-60)
Probab=68.36 E-value=7.4 Score=18.07 Aligned_cols=50 Identities=8% Similarity=0.230 Sum_probs=45.7
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 77770389999999965985000142220011778999999999779868
Q gi|254780799|r 737 SVADDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIG 786 (806)
Q Consensus 737 ~~~d~l~~~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~ 786 (806)
...|++-.+-+++..+..+.|..-|-+++.+-=.-..+-|..||++||+-
T Consensus 6 ~~lD~~D~~IL~~Lq~n~r~s~~elA~~lgis~~tv~~ri~kL~~~giI~ 55 (60)
T 2p5v_A 6 LTLDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVR 55 (60)
T ss_dssp CCCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
T ss_conf 97089999999999983699999999998979889999999998469378
No 212
>>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} (A:)
Probab=68.26 E-value=4.1 Score=19.99 Aligned_cols=24 Identities=17% Similarity=0.515 Sum_probs=19.1
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 002023553047740679999999
Q gi|254780799|r 452 ARMPHLLIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 452 akMPHLLIAGtTGSGKSV~iN~iI 475 (806)
.||+-..|.|..|||||-..+.+-
T Consensus 13 ~k~~~I~i~G~~GsGKtTla~~La 36 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 988189998999998799999999
No 213
>>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genomics, transcription; 2.05A {Pyrococcus horikoshii OT3} (A:)
Probab=68.24 E-value=7.5 Score=18.05 Aligned_cols=58 Identities=19% Similarity=0.214 Sum_probs=46.8
Q ss_pred HHHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHH-HCCCCCEEEECHH
Q ss_conf 999999996598500014222001177899999999977986802-2788726731712
Q gi|254780799|r 744 KQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPA-SSTGKREILISSM 801 (806)
Q Consensus 744 ~~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~-~g~~~r~vl~~~~ 801 (806)
-..+..+-..+..|.+-|-+++.+-=....+.++.||+.|+|--. +...+|.+++.-.
T Consensus 19 ~~il~~l~~~~~~t~~eLa~~~~i~~~~~s~~l~~L~~~GlV~~~~~~~d~R~~~~~LT 77 (100)
T 1ub9_A 19 LGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEIT 77 (100)
T ss_dssp HHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEEC
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCCCC
T ss_conf 99999972678961999999885268744199998642124888876766754202268
No 214
>>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic transport, mRNA export, protein interaction; HET: ADP; 3.19A {Homo sapiens} (B:)
Probab=68.21 E-value=3.9 Score=20.15 Aligned_cols=56 Identities=18% Similarity=0.192 Sum_probs=41.2
Q ss_pred CCEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHH
Q ss_conf 98687763446888873210058899999986641423799996577753554355
Q gi|254780799|r 589 MPYIVVVIDEMADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPSVDVITGTI 644 (806)
Q Consensus 589 lp~ivviiDElaDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPsvdvitg~i 644 (806)
+..+..+|++=||.|+..+..-......+....+-.-.++.-||-.+.+....-.+
T Consensus 233 ~~~~~~iviDE~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~ 288 (479)
T 3fmp_B 233 PKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKV 288 (479)
T ss_dssp GGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHH
T ss_pred HHHEEEEEEEHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHH
T ss_conf 43547775312234433110047999999758976558753034421899999987
No 215
>>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} (A:1-47,A:135-236)
Probab=68.20 E-value=2.8 Score=21.30 Aligned_cols=39 Identities=21% Similarity=0.329 Sum_probs=25.3
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEE
Q ss_conf 020235530477406799999999999829957847888
Q gi|254780799|r 453 RMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIM 491 (806)
Q Consensus 453 kMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evklil 491 (806)
+=.-+-|-|.+|||||..+++|.==+=|...|.+=.++|
T Consensus 15 ~g~~~~i~G~sG~GKsTl~~~l~~~~~~~~~~~~~~iV~ 53 (149)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTQGGIVM 53 (149)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHTSCEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCEECHCCCEEE
T ss_conf 672899879997888999999999929928882799588
No 216
>>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, activation, DNA-binding, ferrous iron, cytoplasm; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ... (A:1-146)
Probab=68.10 E-value=7.5 Score=18.03 Aligned_cols=37 Identities=16% Similarity=0.143 Sum_probs=26.9
Q ss_pred HHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCH
Q ss_conf 9659850001422200117789999999997798680
Q gi|254780799|r 751 LRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGP 787 (806)
Q Consensus 751 ~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~ 787 (806)
-+.+..+.+=|..+|.+...-+.+++..||++|.|--
T Consensus 20 ~~~~~v~~~elA~~l~vs~~svt~~i~rLe~~GlI~~ 56 (146)
T 2qq9_A 20 EEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVV 56 (146)
T ss_dssp HHTCCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 6599761999999978992799999999997799520
No 217
>>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} (A:1-196)
Probab=68.05 E-value=5.4 Score=19.12 Aligned_cols=48 Identities=17% Similarity=0.168 Sum_probs=31.5
Q ss_pred CCEEEEEHHHHHHHHHHCCC----HHHHHHHHHHHHHH----HCCEEEEEEECCCC
Q ss_conf 98687763446888873210----05889999998664----14237999965777
Q gi|254780799|r 589 MPYIVVVIDEMADLMMVARK----DIESAVQRLAQMAR----ASGIHVIMATQRPS 636 (806)
Q Consensus 589 lp~ivviiDElaDlmm~~~~----~ve~~i~rlaq~ar----a~GiHli~aTqrPs 636 (806)
.+--|+++||.=.++-..+. .-+.....+.+.-+ .-++=+|.+|.||.
T Consensus 123 ~~~~ii~iDeid~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iii~tTN~~~ 178 (196)
T 1d2n_A 123 SQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKD 178 (196)
T ss_dssp SSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHH
T ss_pred HCCCEEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCHH
T ss_conf 12232325346667640455441247899999998616766677845663258832
No 218
>>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, signaling protein; 2.90A {Chlorobaculum tepidum} (A:37-213)
Probab=67.99 E-value=4.5 Score=19.67 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=20.0
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 023553047740679999999999
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTMILSL 478 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~iI~Sl 478 (806)
..++|.|-+|+|||--+|.+.-.=
T Consensus 6 ~ki~i~G~~~vGKTsLi~~l~~~~ 29 (177)
T 3dpu_A 6 IKVHLIGDGMAGKTSLLKQLIGET 29 (177)
T ss_dssp EEEEEESSSCSSHHHHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 679999938987999999996799
No 219
>>2wv9_A Flavivirin protease NS2B regulatory subunit, flavivirin protease NS3 catalytic subunit...; NS2B-NS3 protease; 2.75A {Murray valley encephalitis virus} (A:232-377,A:537-633)
Probab=67.78 E-value=4 Score=20.06 Aligned_cols=109 Identities=17% Similarity=0.134 Sum_probs=70.4
Q ss_pred CEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHCCCCEEEEEECCCCCCHHHCCCC
Q ss_conf 86877634468888732100588999999866414237999965777535543554110251587645866421233886
Q gi|254780799|r 590 PYIVVVIDEMADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRISFQVSSKIDSRTILGEQ 669 (806)
Q Consensus 590 p~ivviiDElaDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPsvdvitg~ikan~p~riaf~v~s~~dSrtild~~ 669 (806)
-|=+||+||.=- | ...--.....+...+...+.+.++.|=.|+-+.-.++. .=..-+.+||+.
T Consensus 101 ~~~lIIiDEaH~-~---~~~~~~~~~~~~~~~~~~~~~~i~mSATp~~~~~~~~~-------------~~~~~~~~~~~~ 163 (243)
T 2wv9_A 101 NYNLFVMDEAHF-T---DPASIAARGYIATRVEAGEAAAIFMTATPPGTSDTMLA-------------HWTEAKILLDNI 163 (243)
T ss_dssp CCSEEEEESTTC-C---CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCTTBH-------------HHHHHHHHHHTS
T ss_pred CCCEEEEECCEE-C---CCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCECHHHH-------------HHHHHHHHHHHC
T ss_conf 863999918547-5---85647667999986216776089940689986766776-------------364799999846
Q ss_pred CHHHHCCCCCEEEECCCCCEEEEEECCC-CHHHHHHHHHHHHHCCCCCC
Q ss_conf 4578658875477368983258883348-98899999999971289742
Q gi|254780799|r 670 GAEQLLGQGDMLYMTGGGRVQRIHGPFV-SDIEVEKVVSHLKTQGEAKY 717 (806)
Q Consensus 670 gae~Llg~gdml~~~~~~~~~r~~g~~v-~~~ev~~v~~~~~~q~~~~y 717 (806)
+- .-|-=-+||.|-..+...+.|-|- .+++=.+.+++++...-|.+
T Consensus 164 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (243)
T 2wv9_A 164 HL--PNGLVAQLYGPERDKTYTMDGEYRLRGEERKTFLELIKTADLPVW 210 (243)
T ss_dssp CB--TTTBCCCCCGGGGGGCCCCTTTTCCCHHHHHHHHHHHHTSCCCHH
T ss_pred CC--CCCCCCCCCCCCHHHCCCCCCCEECCCCCCCCHHHHHHHCCCCHH
T ss_conf 99--887767667897232346786011022453245552134258788
No 220
>>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} (B:1-196)
Probab=67.65 E-value=3.9 Score=20.18 Aligned_cols=144 Identities=14% Similarity=0.073 Sum_probs=70.1
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHH----EEEEEECCCHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 202355304774067999999999998299578----4788852310011102770343122334304566899999999
Q gi|254780799|r 454 MPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQ----CRLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCE 529 (806)
Q Consensus 454 MPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~e----vkliliDPK~vEls~Y~~iPHLl~pVvTd~~kA~~aL~w~V~E 529 (806)
-.|+|+-|-.|+||+-...++.-.+-....+.. +.++....-- ........
T Consensus 45 ~~~ili~GppGtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~ 99 (196)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCRE-------------------------VGGTPQAV 99 (196)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHH-------------------------HCSCHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECHHH-------------------------HCCCHHHH
T ss_conf 88658987998849999999999975311554567770489843466-------------------------41304667
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCCH
Q ss_conf 99999999870899689999999988744786677544677654543222332232346986877634468888732100
Q gi|254780799|r 530 MEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVARKD 609 (806)
Q Consensus 530 Me~RY~l~a~~~vRni~~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ivviiDElaDlmm~~~~~ 609 (806)
...-+................+....... .+.-...++++||.-.+.-...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~ld~~d~~~~~~~-- 150 (196)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKN---------------------------GTRNIRAIIYLDEVDTLVKRRG-- 150 (196)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHH---------------------------HHSSSCEEEEEETTHHHHHSTT--
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHH---------------------------HHCCCCCCCCHHHHHHHHCCCH--
T ss_conf 99998620354341342038999998751---------------------------0103664100011334420000--
Q ss_pred HHHHHHHHHHHH-HHCCEEEEEEECCC-CCCCCCHHHHHCCCCEEEE
Q ss_conf 588999999866-41423799996577-7535543554110251587
Q gi|254780799|r 610 IESAVQRLAQMA-RASGIHVIMATQRP-SVDVITGTIKANFPTRISF 654 (806)
Q Consensus 610 ve~~i~rlaq~a-ra~GiHli~aTqrP-svdvitg~ikan~p~riaf 654 (806)
....+.++- .-.++.+|.+|-|+ ..+-+..-++.=|-.+|-|
T Consensus 151 ---~~~~~~~~~~~~~~~~iI~~tn~~~~~~~~~~~~~~R~~~~i~~ 194 (196)
T 2qby_B 151 ---GDIVLYQLLRSDANISVIMISNDINVRDYMEPRVLSSLGPSVIF 194 (196)
T ss_dssp ---SHHHHHHHHTSSSCEEEEEECSSTTTTTTSCHHHHHTCCCEEEE
T ss_pred ---HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEC
T ss_conf ---10223321025644321210014677876445554215641111
No 221
>>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* (A:)
Probab=67.64 E-value=4.4 Score=19.74 Aligned_cols=25 Identities=20% Similarity=0.313 Sum_probs=21.1
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 0202355304774067999999999
Q gi|254780799|r 453 RMPHLLIAGTTGSGKSVAINTMILS 477 (806)
Q Consensus 453 kMPHLLIAGtTGSGKSV~iN~iI~S 477 (806)
|-+.+.+-|.+|+|||--+|.++-.
T Consensus 2 k~~kv~iiG~~~vGKStLi~~l~~~ 26 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 8319999989999899999999789
No 222
>>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} (A:)
Probab=67.63 E-value=5.6 Score=19.00 Aligned_cols=153 Identities=13% Similarity=0.106 Sum_probs=68.1
Q ss_pred EEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCCHHH------H-CCCCCCHHH
Q ss_conf 678541002023553047740679999999999982995784788852310011102770343------1-223343045
Q gi|254780799|r 446 PIIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNL------L-TPVVTNPQK 518 (806)
Q Consensus 446 pvv~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~iPHL------l-~pVvTd~~k 518 (806)
.+-..+.+=-.+-|-|.+|||||--+|+|.- -..|.+= -|.++..+--.+...-+++. . ..-..++ .
T Consensus 23 ~isf~i~~G~~~~ivG~sGsGKSTLl~~l~g----~~~~~~G-~i~i~g~i~yvpQ~~~l~~~ti~eni~~g~~~~~~-~ 96 (237)
T 2cbz_A 23 GITFSIPEGALVAVVGQVGCGKSSLLSALLA----EMDKVEG-HVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEP-Y 96 (237)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHTT----CSEEEEE-EEEECSCEEEECSSCCCCSEEHHHHHHTTSCCCTT-H
T ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHHH----HCCCCCC-EEEECCEEEEECHHHHHCCCCCCHHHHHCCCCCHH-H
T ss_conf 6599983998999999999999999999985----2788787-38614519997626643144212344414453548-9
Q ss_pred HHHHHHHH-----HHHHHHHHHHHHHCCCCCHHH-HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 66899999-----999999999998708996899-999999887447866775446776545432223322323469868
Q gi|254780799|r 519 AVTVLKWL-----VCEMEERYQKMSKIGVRNIDG-FNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYI 592 (806)
Q Consensus 519 A~~aL~w~-----V~EMe~RY~l~a~~~vRni~~-yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~i 592 (806)
.-.+++-| +.-++.+|+..-..+-.|+.| --+|+.-|++-- .=|-
T Consensus 97 ~~~~~~~~~~~~~~~~l~~g~~~~i~~~~~~LSgGqkQRv~lAraL~----------------------------~~p~- 147 (237)
T 2cbz_A 97 YRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVY----------------------------SNAD- 147 (237)
T ss_dssp HHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHH----------------------------HCCS-
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHC----------------------------CCCC-
T ss_conf 99999986579999845323320114788808999988898742121----------------------------3872-
Q ss_pred EEEHHHHHHHHHHCCCHHHHHHHH-H-HHHHHHCCEEEEEEECCCC
Q ss_conf 776344688887321005889999-9-9866414237999965777
Q gi|254780799|r 593 VVVIDEMADLMMVARKDIESAVQR-L-AQMARASGIHVIMATQRPS 636 (806)
Q Consensus 593 vviiDElaDlmm~~~~~ve~~i~r-l-aq~ara~GiHli~aTqrPs 636 (806)
|++.||=---+ --..+..|.. | .++.+.-+.-.|+.|.|++
T Consensus 148 illlDEPts~L---D~~~~~~i~~~l~~~~~~~~~~T~i~vtH~l~ 190 (237)
T 2cbz_A 148 IYLFDDPLSAV---DAHVGKHIFENVIGPKGMLKNKTRILVTHSMS 190 (237)
T ss_dssp EEEEESTTTTS---CHHHHHHHHHHTTSTTSTTTTSEEEEECSCST
T ss_pred EEEECCCCCCC---CHHHHHHHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 68522642336---89999999999999976406987999968899
No 223
>>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A (A:1-138)
Probab=67.61 E-value=7.1 Score=18.23 Aligned_cols=35 Identities=11% Similarity=0.189 Sum_probs=26.2
Q ss_pred HCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 65985000142220011778999999999779868
Q gi|254780799|r 752 RDNKASISYIQRRLGIGYNRAASIIENMEEKGVIG 786 (806)
Q Consensus 752 ~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~ 786 (806)
+.+..|.+-|-++|.|--.-..|+++.||++|.|-
T Consensus 17 ~~~~~t~~~lA~~lgis~~tvt~~l~~Le~~GlV~ 51 (138)
T 3hrs_A 17 RHNKITNKEIAQLMQVSPPAVTEMMKKLLAEELLI 51 (138)
T ss_dssp SCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
T ss_conf 49987599999997899289999999999889978
No 224
>>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, non-SMC subunit, ABC-type ATPase, WHD, ATP; HET: ATG; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* (A:1-208,A:411-483)
Probab=67.44 E-value=5.1 Score=19.26 Aligned_cols=44 Identities=16% Similarity=0.332 Sum_probs=35.9
Q ss_pred CCCCCEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEE---CCCC
Q ss_conf 34698687763446888873210058899999986641423799996---5777
Q gi|254780799|r 586 FQHMPYIVVVIDEMADLMMVARKDIESAVQRLAQMARASGIHVIMAT---QRPS 636 (806)
Q Consensus 586 ~~~lp~ivviiDElaDlmm~~~~~ve~~i~rlaq~ara~GiHli~aT---qrPs 636 (806)
.+-.|.=..+.||-|-|= -.+|.-|-+.+---++.|++|. ++|-
T Consensus 208 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (281)
T 3euj_A 208 GDILPCRLLFLDQAARLD-------AMSINTLFELCERLDMQLLIAAPENISPE 254 (281)
T ss_dssp SSCCCCCEEEESSGGGSC-------HHHHHHHHHHHHHTTCEEEEEESSSCCCS
T ss_pred HHCCCCCCCHHHHHHCCC-------HHHHHHHHHHHHHCCCEEEEECCCHHHHH
T ss_conf 724547601326873789-------89999999999981984798628076787
No 225
>>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum 3D7} (A:)
Probab=67.39 E-value=3.7 Score=20.34 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=21.0
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 002023553047740679999999
Q gi|254780799|r 452 ARMPHLLIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 452 akMPHLLIAGtTGSGKSV~iN~iI 475 (806)
.+.+.+.+.|-+|+|||--+|++.
T Consensus 27 ~~~~~i~iiG~~~vGKSSLin~l~ 50 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVS 50 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 999989998999998999999995
No 226
>>1jmx_A Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} (A:1-80)
Probab=67.30 E-value=3.5 Score=20.50 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=21.2
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 2588833489889999999997128
Q gi|254780799|r 689 VQRIHGPFVSDIEVEKVVSHLKTQG 713 (806)
Q Consensus 689 ~~r~~g~~v~~~ev~~v~~~~~~q~ 713 (806)
.++.|||.+||+|++.|++|+.++.
T Consensus 44 M~~~~Ga~is~~e~~~Iv~YLa~~y 68 (80)
T 1jmx_A 44 MQVMHGLQISDDDRRTLVKYLADKQ 68 (80)
T ss_dssp HHHHHCCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHCC
T ss_conf 9874288678789999999998605
No 227
>>1z6g_A Guanylate kinase; structural genomics, SGC, structural genomics consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum 3D7} (A:1-55,A:105-218)
Probab=67.22 E-value=4.4 Score=19.78 Aligned_cols=100 Identities=15% Similarity=0.210 Sum_probs=49.4
Q ss_pred CCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHH--HHHCCHHHEE---------EEEECCCHHHHHHCCCC-HHHHCC
Q ss_conf 66678541002023553047740679999999999--9829957847---------88852310011102770-343122
Q gi|254780799|r 444 GKPIIADLARMPHLLIAGTTGSGKSVAINTMILSL--LYRMTPAQCR---------LIMIDPKMLELSVYDGI-PNLLTP 511 (806)
Q Consensus 444 G~pvv~DLakMPHLLIAGtTGSGKSV~iN~iI~Sl--Lyk~~P~evk---------liliDPK~vEls~Y~~i-PHLl~p 511 (806)
-+.+-.++.+-=++.|-|..|||||--+++|.-=+ .+..+=++++ ++=|||.=++---+..+ |+.+.-
T Consensus 13 l~~i~l~i~~g~~~~i~G~sG~GKsTll~~l~g~~~~~~~~~i~sI~~v~~~gk~~ildv~~qg~~~lk~~~l~p~vi~I 92 (169)
T 1z6g_A 13 GLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEFPNYFYFSVSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYI 92 (169)
T ss_dssp ---------CCCCEEEECSTTSSHHHHHHHHHHHSTTTEEECCHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEE
T ss_pred CCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCEEEE
T ss_conf 75655545788779999999999999999999609886686675301110012443224662453200101478856999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 33430456689999999999999999870899689999999988
Q gi|254780799|r 512 VVTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQY 555 (806)
Q Consensus 512 VvTd~~kA~~aL~w~V~EMe~RY~l~a~~~vRni~~yN~k~~~~ 555 (806)
-|.-|.. .++++|. ..-|..+-+.-++++..+
T Consensus 93 fi~pps~---------~~L~~RL---~~R~~~s~e~i~~rl~~a 124 (169)
T 1z6g_A 93 FIKPPST---------DVLLSRL---LTRNTENQEQIQKRMEQL 124 (169)
T ss_dssp EEECSCH---------HHHHHHH---HHTCCCCHHHHHHHHHHH
T ss_pred EEECCCH---------HHHHHHH---HCCCCCHHHHHHHHHHHH
T ss_conf 9713648---------9998654---301231277899999999
No 228
>>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* (A:)
Probab=67.20 E-value=4.2 Score=19.92 Aligned_cols=156 Identities=19% Similarity=0.181 Sum_probs=77.8
Q ss_pred EEEECCCCCEEEEEECCCCHHHHHHHHHHHHH-------------HHHCCHH----HEEEEEECCCHHHHHHCCCCHHHH
Q ss_conf 78541002023553047740679999999999-------------9829957----847888523100111027703431
Q gi|254780799|r 447 IIADLARMPHLLIAGTTGSGKSVAINTMILSL-------------LYRMTPA----QCRLIMIDPKMLELSVYDGIPNLL 509 (806)
Q Consensus 447 vv~DLakMPHLLIAGtTGSGKSV~iN~iI~Sl-------------Lyk~~P~----evkliliDPK~vEls~Y~~iPHLl 509 (806)
+-..+.+==++-|.|.+|||||.-++.|.--+ +.+..+. .+..+-=||-....++++.|.--+
T Consensus 38 isl~i~~Ge~~~IiG~sGsGKSTllkll~gl~~p~~G~I~i~g~~i~~~~~~~l~~~i~~v~Q~~~lf~~tv~eni~~gl 117 (271)
T 2ixe_A 38 LTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGL 117 (271)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHHHTTC
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECHHHCHHHHHHHHHHCCCCCEEECCCHHHHHHHCC
T ss_conf 58998399899999999987999999997667788988958999811211167887763324563530652455444131
Q ss_pred CCCCCCHHHHHHHHHH----HHHHHHHHHHHHHHCCCCCHHHHH-HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2233430456689999----999999999999870899689999-99998874478667754467765454322233223
Q gi|254780799|r 510 TPVVTNPQKAVTVLKW----LVCEMEERYQKMSKIGVRNIDGFN-LKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHF 584 (806)
Q Consensus 510 ~pVvTd~~kA~~aL~w----~V~EMe~RY~l~a~~~vRni~~yN-~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (806)
...-++-.--..++.- .+....+.|+.....+.+++.|=. +|+.-|++--
T Consensus 118 ~~~~~~~~i~~~~~~~~~~d~i~~l~~g~d~~i~~~~~~LSgGq~Qrv~iARaL~------------------------- 172 (271)
T 2ixe_A 118 TRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALI------------------------- 172 (271)
T ss_dssp SSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHT-------------------------
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHH-------------------------
T ss_conf 0002368999998654599999846011001432889875989941301254462-------------------------
Q ss_pred CCCCCCEEEEEHHHHHHHHHHCCCH--HHHHHHHHH-HHHHHCCEEEEEEECCCC
Q ss_conf 2346986877634468888732100--588999999-866414237999965777
Q gi|254780799|r 585 DFQHMPYIVVVIDEMADLMMVARKD--IESAVQRLA-QMARASGIHVIMATQRPS 636 (806)
Q Consensus 585 ~~~~lp~ivviiDElaDlmm~~~~~--ve~~i~rla-q~ara~GiHli~aTqrPs 636 (806)
.=|-| +|.||-- ++=| -+..|.++- +..+-.|.-+|+-|+|++
T Consensus 173 ---~~p~i-lilDEpt-----s~LD~~~~~~i~~~l~~~~~~~~~Tii~vtH~l~ 218 (271)
T 2ixe_A 173 ---RKPRL-LILDNAT-----SALDAGNQLRVQRLLYESPEWASRTVLLITQQLS 218 (271)
T ss_dssp ---TCCSE-EEEESTT-----TTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH
T ss_pred ---HCCCH-HHHCCCC-----CCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH
T ss_conf ---49522-6664866-----5478889999999999998618989999868999
No 229
>>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} (A:1-44,A:95-171)
Probab=67.18 E-value=5.9 Score=18.82 Aligned_cols=40 Identities=33% Similarity=0.409 Sum_probs=31.3
Q ss_pred CCE-EEEEECCCCHHHHHHHHHHHHHHHH-----------CCHHHEEEEEEC
Q ss_conf 202-3553047740679999999999982-----------995784788852
Q gi|254780799|r 454 MPH-LLIAGTTGSGKSVAINTMILSLLYR-----------MTPAQCRLIMID 493 (806)
Q Consensus 454 MPH-LLIAGtTGSGKSV~iN~iI~SlLyk-----------~~P~evkliliD 493 (806)
||+ +++.|-.|||||--++.+..-|--+ ++|.++=+|+|-
T Consensus 1 mp~vi~~~G~~G~GKTT~~~~l~~~l~~~g~~v~vi~~D~~~~~d~DlILvE 52 (121)
T 2f1r_A 1 MSLILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFDYDLVITE 52 (121)
T ss_dssp --CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------TCSEEEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECEECCCCCHCCCCEEE
T ss_conf 9979999888995399999999834187886899906642555432200023
No 230
>>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A (A:655-778,A:874-986)
Probab=67.05 E-value=5.5 Score=19.04 Aligned_cols=159 Identities=16% Similarity=0.175 Sum_probs=81.7
Q ss_pred EECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCH-HH---HHHCCCCHHHH-----------CCCC
Q ss_conf 541002023553047740679999999999982995784788852310-01---11027703431-----------2233
Q gi|254780799|r 449 ADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKM-LE---LSVYDGIPNLL-----------TPVV 513 (806)
Q Consensus 449 ~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~-vE---ls~Y~~iPHLl-----------~pVv 513 (806)
..+.+-=++-|=|.||||||--+| ||++.-.-+===|+||-+- +. -..|..+.+++ .|.-
T Consensus 40 l~i~~Ge~vAIVG~sGsGKSTLik-----LL~rly~pt~G~I~idG~~~~~~~~q~~~~~~~~~~~~t~~~nI~~~~~~~ 114 (237)
T 2iw3_A 40 FQCSLSSRIAVIGPNGAGKSTLIN-----VLTGELLPTSGEVYTHENCRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTG 114 (237)
T ss_dssp EEEETTCEEEECSCCCHHHHHHHH-----HHTTSSCCSEEEEEECTTCCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTS
T ss_pred EEECCCCEEEEECCCCCCCHHHHH-----HHHCCCCCCCCCEEECCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 586279769996776777106888-----861766787786554462057641134676555443123578778874047
Q ss_pred CCHHH--H-----HHHHHHHHHHHHHHHHHHHHCCCCCHHHHH-HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 43045--6-----689999999999999999870899689999-999988744786677544677654543222332232
Q gi|254780799|r 514 TNPQK--A-----VTVLKWLVCEMEERYQKMSKIGVRNIDGFN-LKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFD 585 (806)
Q Consensus 514 Td~~k--A-----~~aL~w~V~EMe~RY~l~a~~~vRni~~yN-~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (806)
+|..- | ..-..+++..+.-.++.++.-..+++.|=- +|+.-|++--
T Consensus 115 ~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~~LSGGqkQRvaiARAl~-------------------------- 168 (237)
T 2iw3_A 115 EDRETXDRANPLTRKEIEEHCSXLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTW-------------------------- 168 (237)
T ss_dssp SCTTTTTTTSCCCHHHHHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHT--------------------------
T ss_pred CCHHHHHHHCHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHH--------------------------
T ss_conf 531545410255799999999873997577538986768999999999999998--------------------------
Q ss_pred CCCCCEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHCCCCEEEE
Q ss_conf 346986877634468888732100588999999866414237999965777535543554110251587
Q gi|254780799|r 586 FQHMPYIVVVIDEMADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRISF 654 (806)
Q Consensus 586 ~~~lp~ivviiDElaDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPsvdvitg~ikan~p~riaf 654 (806)
.=|- +++-||=. ++=|.+. ..-|-+.-|--|+..|+.|.+++. =.++-.||.+
T Consensus 169 --~~P~-illlDEPt-----s~LD~~~-~~~i~~~l~~~~~Tvi~vtHd~~~-------~~~~~dri~v 221 (237)
T 2iw3_A 169 --QRPH-LIVLDEPT-----NYLDRDS-LGALSKALKEFEGGVIIITHSAEF-------TKNLTEEVWA 221 (237)
T ss_dssp --TCCS-EEEEECGG-----GTCCHHH-HHHHHHHHHSCSSEEEEECSCHHH-------HTTTCCEEEC
T ss_pred --HCCC-EEEEECCC-----CCCCHHH-HHHHHHHHHHCCCEEEEEECCHHH-------HHHHCCEEEE
T ss_conf --6889-99995986-----3126999-999999998229979999789999-------9986999999
No 231
>>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} (A:)
Probab=67.02 E-value=3.3 Score=20.74 Aligned_cols=54 Identities=19% Similarity=0.257 Sum_probs=34.8
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCCHHHH
Q ss_conf 235530477406799999999999829957847888523100111027703431
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLL 509 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~iPHLl 509 (806)
++++..-|||||..|---=+++-+.+....-.-+|+.--+.+-..+|+-+-++.
T Consensus 53 dvi~~A~TGsGKTlayllp~l~~i~~~~~~~~aiil~pt~~l~~q~~~~~~~~~ 106 (224)
T 1qde_A 53 DVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALA 106 (224)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCC
T ss_conf 899989888751135441226655125678449999465676336676664302
No 232
>>1cu1_A Protein (protease/helicase NS3); bifunctional,protease-helicase; 2.50A {Hepatitis c virus} (A:203-343,A:497-638)
Probab=66.78 E-value=2.5 Score=21.62 Aligned_cols=134 Identities=16% Similarity=0.058 Sum_probs=61.1
Q ss_pred ECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 41002023553047740679999999999982995784788852310011102770343122334304566899999999
Q gi|254780799|r 450 DLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCE 529 (806)
Q Consensus 450 DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~iPHLl~pVvTd~~kA~~aL~w~V~E 529 (806)
-|.+=-++++.+.||||||..+=-.| .+.. ..-+|..|.+| ++.+
T Consensus 5 aL~~gk~vII~APTGSGKT~v~ll~i--------------------------le~g---~rvLVL~Ptra------L~~Q 49 (283)
T 1cu1_A 5 VPQSFQVAHLHAPTGSGKSTKVPAAY--------------------------AAQG---YKVLVLNPSVA------ATLG 49 (283)
T ss_dssp CCSSCEEEEEECCSSSSTTTHHHHHH--------------------------HTTT---CCEEEEESCHH------HHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHH--------------------------HHCC---CCEEEECCCHH------HHHH
T ss_conf 00164299998689999899999999--------------------------9769---97999261799------9999
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE-EEEEHHHHHHHHHHCCC
Q ss_conf 99999999870899689999999988744786677544677654543222332232346986-87763446888873210
Q gi|254780799|r 530 MEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPY-IVVVIDEMADLMMVARK 608 (806)
Q Consensus 530 Me~RY~l~a~~~vRni~~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~-ivviiDElaDlmm~~~~ 608 (806)
|.+|.+.+....+-.+.+.... .. +...-..+...........+..+.. +.+|+||. |.+
T Consensus 50 i~~rl~k~~~~~~~~~~~~~~~--------~~-----~~~i~~~T~g~ll~~l~~~~~~~~~Ii~dViDEa-H~~----- 110 (283)
T 1cu1_A 50 FGAYMSKAHGIDPNIRTGVRTI--------TT-----GAPVTYSTYGKFLADGGCSGGAYDIIICDECHST-DST----- 110 (283)
T ss_dssp HHHHHHHHTSSCCEEECSSCCB--------CC-----CCSEEEEEHHHHHHHTSCCTTSCSEEEEETTTCC-SHH-----
T ss_pred HHHHHHHHHCCCCCCEEEEEEE--------CC-----CCEEEEECCHHHHHCCCCCCCCCCEEEEEEEECC-CHH-----
T ss_conf 9999999858998857720994--------49-----9349998788898557655678897999975348-877-----
Q ss_pred HHHHHHHHHHHHHHH-CCEEEEEEECCCCCC
Q ss_conf 058899999986641-423799996577753
Q gi|254780799|r 609 DIESAVQRLAQMARA-SGIHVIMATQRPSVD 638 (806)
Q Consensus 609 ~ve~~i~rlaq~ara-~GiHli~aTqrPsvd 638 (806)
....+..+-++++- ....+|+.|=.|..+
T Consensus 111 -~d~~~g~l~ela~~~~~~qvIllSATpP~~ 140 (283)
T 1cu1_A 111 -TILGIGTVLDQAETAGARLVVLATATPPGS 140 (283)
T ss_dssp -HHHHHHHHHHHTTTTTCSEEEEEESSCTTC
T ss_pred -HHHHHHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf -999999999986648751899734666622
No 233
>>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* (A:)
Probab=66.74 E-value=4 Score=20.07 Aligned_cols=19 Identities=37% Similarity=0.524 Sum_probs=14.8
Q ss_pred EEEEECCCCHHHHHHHHHH
Q ss_conf 3553047740679999999
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI 475 (806)
..|.|.+|||||...+.+-
T Consensus 3 I~i~G~~GsGKtTla~~L~ 21 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEIS 21 (205)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9998898888999999999
No 234
>>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} (A:1-227)
Probab=66.69 E-value=3.5 Score=20.48 Aligned_cols=50 Identities=22% Similarity=0.258 Sum_probs=35.1
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCC
Q ss_conf 23553047740679999999999982995784788852310011102770
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGI 505 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~i 505 (806)
.++++.-|||||..+-=.=++..+++..+.---+|+.-.+-+-+.+|+-+
T Consensus 60 Dvi~~A~TGSGKT~ayllp~~~~~~~~~~~~~~lil~Ptrel~~qi~~~~ 109 (227)
T 1s2m_A 60 DILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVV 109 (227)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHH
T ss_pred CEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHH
T ss_conf 88998899858899999999974211467743999941022100123322
No 235
>>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} (A:)
Probab=66.48 E-value=4.8 Score=19.47 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=21.9
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 00202355304774067999999999
Q gi|254780799|r 452 ARMPHLLIAGTTGSGKSVAINTMILS 477 (806)
Q Consensus 452 akMPHLLIAGtTGSGKSV~iN~iI~S 477 (806)
-|-+.+.+.|-.|+|||--+|.+.-+
T Consensus 5 ~k~~kv~iiG~~~vGKSsLi~~l~~~ 30 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 65458999999998799999999689
No 236
>>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli} (A:1-166)
Probab=66.24 E-value=5.8 Score=18.89 Aligned_cols=33 Identities=30% Similarity=0.377 Sum_probs=27.2
Q ss_pred ECCCCCE-EEEEECCCCHHHHHHHHHHHHHHHHC
Q ss_conf 4100202-35530477406799999999999829
Q gi|254780799|r 450 DLARMPH-LLIAGTTGSGKSVAINTMILSLLYRM 482 (806)
Q Consensus 450 DLakMPH-LLIAGtTGSGKSV~iN~iI~SlLyk~ 482 (806)
+..+.|| +|.-|-.|.||+....++...+....
T Consensus 19 ~~~~~~~~iLl~GppGtGKt~lA~~lA~~l~~~~ 52 (166)
T 1a5t_A 19 QAGRGHHALLIQALPGMGDDALIYALSRYLLCQQ 52 (166)
T ss_dssp HTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSS
T ss_pred HCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC
T ss_conf 8599672584689999779999999999970879
No 237
>>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics; 2.20A {Oenococcus oeni psu-1} (A:1-106)
Probab=66.24 E-value=7.3 Score=18.11 Aligned_cols=58 Identities=22% Similarity=0.241 Sum_probs=45.3
Q ss_pred CCCCCHHHHHHHHHHHH----------CCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCCCC
Q ss_conf 87777038999999996----------59850001422200117789999999997798680227887
Q gi|254780799|r 736 SSVADDLYKQAVDIVLR----------DNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPASSTGK 793 (806)
Q Consensus 736 ~~~~d~l~~~a~~~v~~----------~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~~g~~~ 793 (806)
.....++|++..+-+.+ ++--|.+-|-++|.+.-+-+-+-+.+||++|+|-...|.|.
T Consensus 6 ~~~~~~~~~~i~~~l~~~I~~g~l~~G~~LPs~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~~~G~ 73 (106)
T 3by6_A 6 ITQKRPVYLQLVDRIKNEVATDVLSANDQLPSVRETALQEKINPNTVAKAYKELEAQKVIRTIPGKGT 73 (106)
T ss_dssp CCCCCCHHHHHHHHHHHHHHTTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEE
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECCCEE
T ss_conf 57887899999999999998599999499844999999969898999999999997890799728778
No 238
>>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} (A:1-92,A:171-257)
Probab=66.08 E-value=3.6 Score=20.44 Aligned_cols=37 Identities=30% Similarity=0.366 Sum_probs=24.3
Q ss_pred CCCCCCCCEEEEECC----CCCEEEEEECCCCHHHHHHHHH
Q ss_conf 045666666785410----0202355304774067999999
Q gi|254780799|r 438 LGKSIEGKPIIADLA----RMPHLLIAGTTGSGKSVAINTM 474 (806)
Q Consensus 438 LGKdI~G~pvv~DLa----kMPHLLIAGtTGSGKSV~iN~i 474 (806)
|-|...+.+++-|+. +==..-+.|..|||||-.++.|
T Consensus 13 l~~~yg~~~~l~~isl~i~~Ge~~~liG~nGaGKSTll~~i 53 (179)
T 1g6h_A 13 IVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVI 53 (179)
T ss_dssp EEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHH
T ss_conf 89998998987435789859979999868999999999999
No 239
>>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} (A:1-249)
Probab=65.97 E-value=7.3 Score=18.12 Aligned_cols=156 Identities=19% Similarity=0.238 Sum_probs=74.7
Q ss_pred EEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEE--ECCCHHH---HHHCCCC---HHHHCC------
Q ss_conf 6785410020235530477406799999999999829957847888--5231001---1102770---343122------
Q gi|254780799|r 446 PIIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIM--IDPKMLE---LSVYDGI---PNLLTP------ 511 (806)
Q Consensus 446 pvv~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evklil--iDPK~vE---ls~Y~~i---PHLl~p------ 511 (806)
.+-.++.+==++.+.|..|||||--++.|-- ...|+.=..-+ -+|-.+- -.+...| ||-+.+
T Consensus 39 ~vsl~i~~Ge~~~liG~NGaGKSTLlk~i~G----~~~~~~G~i~~~g~~~~~~~~~~~~~r~~i~~v~~~~~~~~~~~~ 114 (249)
T 2ihy_A 39 KISWQIAKGDKWILYGLNGAGKTTLLNILNA----YEPATSGTVNLFGKXPGKVGYSAETVRQHIGFVSHSLLEKFQEGE 114 (249)
T ss_dssp EEEEEEETTCEEEEECCTTSSHHHHHHHHTT----SSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTS
T ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHHC----CCCCCCCEEEECCEECCCCCCCHHHHHHHCCEEECCCHHHCCHHH
T ss_conf 3165887998999998999839999999965----678888889999997453572689998640334321001157444
Q ss_pred -----CCCCHHHHHHHHHHHHHHHHH-HHHHHHHCCCCC--------HHHHH-HHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf -----334304566899999999999-999998708996--------89999-999988744786677544677654543
Q gi|254780799|r 512 -----VVTNPQKAVTVLKWLVCEMEE-RYQKMSKIGVRN--------IDGFN-LKVAQYHNTGKKFNRTVQTGFDRKTGE 576 (806)
Q Consensus 512 -----VvTd~~kA~~aL~w~V~EMe~-RY~l~a~~~vRn--------i~~yN-~k~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (806)
++.+.-+.....++.-.|+.+ .++++...|..+ +.+=. +|+.-|++-
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~iAraL------------------ 176 (249)
T 2ihy_A 115 RVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGXSAKAQQYIGYLSTGEKQRVXIARAL------------------ 176 (249)
T ss_dssp BHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHH------------------
T ss_conf 25789987555421323588899999999999862976565088220798792349999999------------------
Q ss_pred CCCCCCCCCCCCCCEEEEEHHH-HHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCC
Q ss_conf 2223322323469868776344-68888732100588999999866414237999965777
Q gi|254780799|r 577 AIYETEHFDFQHMPYIVVVIDE-MADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPS 636 (806)
Q Consensus 577 ~~~~~~~~~~~~lp~ivviiDE-laDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPs 636 (806)
-.=|-| +|-|| ++-|=..+.+++-..|-+|++-. .|+-.|+.|.+..
T Consensus 177 ----------~~~P~l-LiLDEPt~gLD~~~~~~i~~ll~~l~~~~--~~~~vi~vtH~l~ 224 (249)
T 2ihy_A 177 ----------XGQPQV-LILDEPAAGLDFIARESLLSILDSLSDSY--PTLAXIYVTHFIE 224 (249)
T ss_dssp ----------HTCCSE-EEEESTTTTCCHHHHHHHHHHHHHHHHHC--TTCEEEEEESCGG
T ss_pred ----------HHCCCE-EEECCCCCCCCHHHHHHHHHHHHHHHHHC--CCCEEEEECCCHH
T ss_conf ----------729988-99638765499999999999999999848--9969999888999
No 240
>>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} (A:159-342)
Probab=65.76 E-value=3.1 Score=20.91 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=17.6
Q ss_pred EEEEECCCCHHHHHHHHHHHH
Q ss_conf 355304774067999999999
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMILS 477 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~S 477 (806)
..+.|.+|+|||--+|++.-+
T Consensus 3 V~iiG~~nvGKSSLin~l~~~ 23 (184)
T 1lnz_A 3 VGLVGFPSVGKSTLLSVVSSA 23 (184)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEEEECCCCCCHHHHHHHCC
T ss_conf 799986689844899998589
No 241
>>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) class, TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima MSB8} (A:1-225)
Probab=65.39 E-value=7.7 Score=17.96 Aligned_cols=143 Identities=15% Similarity=0.262 Sum_probs=69.9
Q ss_pred EEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEE-------------------ECCCHH-HHHHCCCCH
Q ss_conf 785410020235530477406799999999999829957847888-------------------523100-111027703
Q gi|254780799|r 447 IIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIM-------------------IDPKML-ELSVYDGIP 506 (806)
Q Consensus 447 vv~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evklil-------------------iDPK~v-Els~Y~~iP 506 (806)
+-.++.+==.+-|-|..|||||..+|.|-- | .+|++=+..+ =|+-.. .|++|+.|-
T Consensus 22 vsf~i~~Ge~~~iiG~sGaGKSTll~~i~G--l--~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~lTV~eni~ 97 (225)
T 2yyz_A 22 VSFEVKDGEFVALLGPSGCGKTTTLLMLAG--I--YKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIA 97 (225)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHHT--S--SCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHH
T ss_pred CEEEECCCCEEEEECCCCCHHHHHHHHHHC--C--CCCCCCEEEECCEECCCCCHHHCEEEEECCCCCCCCCCCHHHHHH
T ss_conf 177989998999999999859999999975--9--998860999999999888854415788523665476623666654
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHCC--------CCCHHHHH-HHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 431223343045668999999999999-99998708--------99689999-999988744786677544677654543
Q gi|254780799|r 507 NLLTPVVTNPQKAVTVLKWLVCEMEER-YQKMSKIG--------VRNIDGFN-LKVAQYHNTGKKFNRTVQTGFDRKTGE 576 (806)
Q Consensus 507 HLl~pVvTd~~kA~~aL~w~V~EMe~R-Y~l~a~~~--------vRni~~yN-~k~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (806)
-.....++.-+|+++| .+++...+ .+++.|=+ +|+.-|+.-
T Consensus 98 -----------~~l~~~~~~~~~~~~~v~e~l~~~~l~~~~~~~p~~LSGG~kQRv~iAraL------------------ 148 (225)
T 2yyz_A 98 -----------FPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARAL------------------ 148 (225)
T ss_dssp -----------GGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHH------------------
T ss_pred -----------HHHHHCCCHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCHHHHCHHHHHHHH------------------
T ss_conf -----------323210320578889999999753140554067510894784533343211------------------
Q ss_pred CCCCCCCCCCCCCCEEEEEHHHH-HHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCC
Q ss_conf 22233223234698687763446-8888732100588999999866414237999965777
Q gi|254780799|r 577 AIYETEHFDFQHMPYIVVVIDEM-ADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPS 636 (806)
Q Consensus 577 ~~~~~~~~~~~~lp~ivviiDEl-aDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPs 636 (806)
-.=|.| ++-||= +-|=..+..++.+ -|.+..+-.||-.|+.|.-+.
T Consensus 149 ----------~~~P~l-lllDEPts~LD~~~~~~i~~---~i~~l~~~~g~tvi~vtHd~~ 195 (225)
T 2yyz_A 149 ----------VKQPKV-LLFDEPLSNLDANLRMIMRA---EIKHLQQELGITSVYVTHDQA 195 (225)
T ss_dssp ----------TTCCSE-EEEESTTTTSCHHHHHHHHH---HHHHHHHHHCCEEEEEESCHH
T ss_pred ----------CCCCCE-EEECCCCCCCCCHHHHHHHH---HHHHHHHHHCCCEEEEECCHH
T ss_conf ----------358871-34414455547234455677---887888861954899968999
No 242
>>1pby_A Quinohemoprotein amine dehydrogenase 60 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} (A:1-79)
Probab=65.32 E-value=4.5 Score=19.69 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=21.2
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 2588833489889999999997128
Q gi|254780799|r 689 VQRIHGPFVSDIEVEKVVSHLKTQG 713 (806)
Q Consensus 689 ~~r~~g~~v~~~ev~~v~~~~~~q~ 713 (806)
.+..|||.++++|++.|++|+.++.
T Consensus 43 M~~~~Ga~i~~~e~~~Iv~YLa~~y 67 (79)
T 1pby_A 43 MMRNHGVALEPEERAAIVRHLSDTR 67 (79)
T ss_dssp HHHHSCCCCCHHHHHHHHHHHHHHS
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHCC
T ss_conf 9874288578789999999998605
No 243
>>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} (A:1-139)
Probab=65.27 E-value=6.8 Score=18.34 Aligned_cols=56 Identities=16% Similarity=0.260 Sum_probs=43.5
Q ss_pred HHHHHHHHCCC-EEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHC-CCCCEEEECH
Q ss_conf 99999996598-50001422200117789999999997798680227-8872673171
Q gi|254780799|r 745 QAVDIVLRDNK-ASISYIQRRLGIGYNRAASIIENMEEKGVIGPASS-TGKREILISS 800 (806)
Q Consensus 745 ~a~~~v~~~~~-~s~s~lqr~~~igy~raar~~~~~e~~giv~~~~g-~~~r~vl~~~ 800 (806)
.++..+...+. .+.+-|.+++.+-=....|+++.||++|.|--... .-.|.+.+.-
T Consensus 57 ~iL~~l~~~~~~~t~~~La~~~~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~i~L 114 (139)
T 3deu_A 57 VTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKL 114 (139)
T ss_dssp HHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC--------CEEEE
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEE
T ss_conf 9999999769899999999998969989999999999698879862068987578898
No 244
>>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} (A:1-189,A:307-346)
Probab=65.27 E-value=3.5 Score=20.51 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=16.3
Q ss_pred CCCCEEEEEECCCCHHHHHHH
Q ss_conf 002023553047740679999
Q gi|254780799|r 452 ARMPHLLIAGTTGSGKSVAIN 472 (806)
Q Consensus 452 akMPHLLIAGtTGSGKSV~iN 472 (806)
..=.|+++--.||+|||.|.-
T Consensus 24 ~~~k~~lieApTGsGKTl~~l 44 (229)
T 2vl7_A 24 KHGKTLLLNAKPGLGKTVFVE 44 (229)
T ss_dssp HTTCEEEEECCTTSCHHHHHH
T ss_pred HCCCCEEEECCCCHHHHHHHH
T ss_conf 469909998699276999999
No 245
>>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A* (A:)
Probab=65.19 E-value=8.5 Score=17.64 Aligned_cols=12 Identities=25% Similarity=0.340 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHH
Q ss_conf 488999999999
Q gi|254780799|r 144 GIIGDLIIRLPF 155 (806)
Q Consensus 144 GiiG~~l~~~l~ 155 (806)
|-+|-++.+.++
T Consensus 206 GR~~Rll~~~~L 217 (373)
T 2qc0_A 206 GRTGRVLNILYL 217 (373)
T ss_dssp HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
T ss_conf 489999999999
No 246
>>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* (A:1-42,A:107-331)
Probab=65.10 E-value=8.5 Score=17.63 Aligned_cols=154 Identities=17% Similarity=0.173 Sum_probs=84.5
Q ss_pred CCCCCCEEEEECCC--CCE--EEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCCHHHHCCCCCC
Q ss_conf 56666667854100--202--35530477406799999999999829957847888523100111027703431223343
Q gi|254780799|r 440 KSIEGKPIIADLAR--MPH--LLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTN 515 (806)
Q Consensus 440 KdI~G~pvv~DLak--MPH--LLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~iPHLl~pVvTd 515 (806)
.|..-.|.+.+... -|+ +|+-|-+|+|||--+.+|.-.+.-+. .++-+.... ++.....+
T Consensus 41 ~~l~~~~~~~~~~~~~~p~g~iLl~GPpGtGKTtla~ala~~l~~~~-----~~i~i~~~~-----------~~~~~~~~ 104 (267)
T 2vhj_A 41 EDVGCSPVVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEALGGKD-----KYATVRFGE-----------PLSGYNTD 104 (267)
T ss_dssp CTCSBCCEEEEETTEEEESEEEEEECSCSSSHHHHHHHHHHHHHTTS-----CCEEEEBSC-----------SSTTCBCC
T ss_pred HCCCCCHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC-----CCEEEEHHH-----------HHHHCCCH
T ss_conf 53420548999957757898177678999879999999999862899-----938811899-----------87840657
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 04566899999999999999998708996899999999887447866775446776545432223322323469868776
Q gi|254780799|r 516 PQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVV 595 (806)
Q Consensus 516 ~~kA~~aL~w~V~EMe~RY~l~a~~~vRni~~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ivvi 595 (806)
..+....+ -++ +.. .=|++
T Consensus 105 ~~~~~~~~-------------------------~~~---a~~---------------------------------~~il~ 123 (267)
T 2vhj_A 105 FNVFVDDI-------------------------ARA---MLQ---------------------------------HRVIV 123 (267)
T ss_dssp HHHHHHHH-------------------------HHH---HHH---------------------------------CSEEE
T ss_pred HHHHHHHH-------------------------HHH---HHH---------------------------------CCEEE
T ss_conf 69999999-------------------------999---864---------------------------------87899
Q ss_pred HHHHHHHHHHCCC--------HH-HHHHHHHHHHHHHCCEEEEEEECCCC-CCCCCHHHHH--CCCCEEEEEECCCCCCH
Q ss_conf 3446888873210--------05-88999999866414237999965777-5355435541--10251587645866421
Q gi|254780799|r 596 IDEMADLMMVARK--------DI-ESAVQRLAQMARASGIHVIMATQRPS-VDVITGTIKA--NFPTRISFQVSSKIDSR 663 (806)
Q Consensus 596 iDElaDlmm~~~~--------~v-e~~i~rlaq~ara~GiHli~aTqrPs-vdvitg~ika--n~p~riaf~v~s~~dSr 663 (806)
|||+-.+.-.... .+ -+....+...--..++|+|.+|..|. -+.|-.-++. .+-.+|-|.-.+.-.=+
T Consensus 124 iDEi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vI~tTn~~~~~~~ld~~l~r~~r~~~~i~i~~p~~e~r~ 203 (267)
T 2vhj_A 124 IDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNPTSNDDKIVELVKEASRANSTSLVISTDVDGEW 203 (267)
T ss_dssp EECCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECCCSSCSSSHHHHHHHHHHHHCSEEEEECSSTTEE
T ss_pred EEHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCHHHHHHCCCCCCCEEECCCCCHHHHH
T ss_conf 61223431213568888505788989999871656778859998168754653034665466767754450899979999
Q ss_pred HHCCCCC
Q ss_conf 2338864
Q gi|254780799|r 664 TILGEQG 670 (806)
Q Consensus 664 tild~~g 670 (806)
-||.+..
T Consensus 204 ~Il~~~~ 210 (267)
T 2vhj_A 204 QVLTRTG 210 (267)
T ss_dssp EEEEECB
T ss_pred HHHHHHC
T ss_conf 9999756
No 247
>>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} (A:1-228)
Probab=64.97 E-value=4.9 Score=19.40 Aligned_cols=144 Identities=19% Similarity=0.260 Sum_probs=64.8
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCC-HHHHHHCC-CC---H--HHHCCCCCCHHHHHHHHHHH-H
Q ss_conf 2355304774067999999999998299578478885231-00111027-70---3--43122334304566899999-9
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPK-MLELSVYD-GI---P--NLLTPVVTNPQKAVTVLKWL-V 527 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK-~vEls~Y~-~i---P--HLl~pVvTd~~kA~~aL~w~-V 527 (806)
+..+.|-.|||||.-++.|. =|++.+.=+ |.||-+ +..++.+. +| | +-+.|-.|=-+..+.+|+-. =
T Consensus 26 ~~~ilGpnGsGKSTll~~l~--Gl~~p~~G~---I~i~G~di~~~~~~~r~ig~v~Q~~~l~p~ltV~enl~~~l~~~~~ 100 (228)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIA--GIVKPDRGE---VRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVER 100 (228)
T ss_dssp EEEEECCTTSSHHHHHHHHH--TSSCCSEEE---EEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCH
T ss_pred EEEEECCCCCHHHHHHHHHH--CCCCCCCEE---EEECCEECCCCCHHHCCCEEECCHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 99999799981999999997--399989628---9999999886998993840253338888774465655653233788
Q ss_pred HHHHHHHH-HHHHCCCCCHH--------HHH-HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHH
Q ss_conf 99999999-99870899689--------999-999988744786677544677654543222332232346986877634
Q gi|254780799|r 528 CEMEERYQ-KMSKIGVRNID--------GFN-LKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVID 597 (806)
Q Consensus 528 ~EMe~RY~-l~a~~~vRni~--------~yN-~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ivviiD 597 (806)
.|.++|.+ ++...|..++. |=+ +|+.-|++- -.-|- |++.|
T Consensus 101 ~~~~~~~~e~~~~~~l~~~~~~~~~~LSGGq~QRv~iAraL----------------------------~~~P~-iLilD 151 (228)
T 2onk_A 101 VERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARAL----------------------------VIQPR-LLLLD 151 (228)
T ss_dssp HHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHH----------------------------TTCCS-SBEEE
T ss_pred HHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHH----------------------------HCCCC-CEEEC
T ss_conf 99999999999863827576589323898785269875534----------------------------03887-03534
Q ss_pred HH-HHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCC
Q ss_conf 46-8888732100588999999866414237999965777
Q gi|254780799|r 598 EM-ADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPS 636 (806)
Q Consensus 598 El-aDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPs 636 (806)
|= +-|=..+..++-+. |...+|--||-.|+.|+...
T Consensus 152 EPts~LD~~~~~~i~~~---l~~l~~~~~~tii~vtHdl~ 188 (228)
T 2onk_A 152 EPLSAVDLKTKGVLMEE---LRFVQREFDVPILHVTHDLI 188 (228)
T ss_dssp STTSSCCHHHHHHHHHH---HHHHHHHHTCCEEEEESCHH
T ss_pred CCCCCCCHHHHHHHHHH---HHHHHHHCCCEEEEEECCHH
T ss_conf 86444898898799999---99998734976999938999
No 248
>>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* (A:)
Probab=64.96 E-value=4.7 Score=19.53 Aligned_cols=18 Identities=22% Similarity=0.423 Sum_probs=14.0
Q ss_pred EEEEECCCCHHHHHHHHH
Q ss_conf 355304774067999999
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTM 474 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~i 474 (806)
++|.|..|||||--...+
T Consensus 7 I~i~G~~GsGKsTl~~~L 24 (204)
T 2v54_A 7 IVFEGLDKSGKTTQCMNI 24 (204)
T ss_dssp EEEECCTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
T ss_conf 999899888799999999
No 249
>>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} (A:)
Probab=64.95 E-value=5.6 Score=19.00 Aligned_cols=74 Identities=14% Similarity=0.170 Sum_probs=40.4
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHCCHH-HEEEEEECCCHHHHHHCC--------CC-HHHHC--------CCCCCH
Q ss_conf 0235530477406799999999999829957-847888523100111027--------70-34312--------233430
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTMILSLLYRMTPA-QCRLIMIDPKMLELSVYD--------GI-PNLLT--------PVVTNP 516 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~-evkliliDPK~vEls~Y~--------~i-PHLl~--------pVvTd~ 516 (806)
.+++|.|..|+|||-.||.++..=.....|+ -.+-.-++-+.+.+..|+ .. +|.+. =-+||+
T Consensus 17 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 96 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDR 96 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCT
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCEEEEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCCC
T ss_conf 79999999998889999999648887431235404899821637887763143012456655653145034432011343
Q ss_pred HHHHHHHHHHHH
Q ss_conf 456689999999
Q gi|254780799|r 517 QKAVTVLKWLVC 528 (806)
Q Consensus 517 ~kA~~aL~w~V~ 528 (806)
+--..+..|...
T Consensus 97 ~s~~~~~~~~~~ 108 (187)
T 1zj6_A 97 ERISVTREELYK 108 (187)
T ss_dssp TTHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
T ss_conf 312343210001
No 250
>>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* (A:1-187,A:310-351)
Probab=64.92 E-value=3.7 Score=20.37 Aligned_cols=21 Identities=29% Similarity=0.316 Sum_probs=16.4
Q ss_pred CCCCCEEEEEECCCCHHHHHH
Q ss_conf 100202355304774067999
Q gi|254780799|r 451 LARMPHLLIAGTTGSGKSVAI 471 (806)
Q Consensus 451 LakMPHLLIAGtTGSGKSV~i 471 (806)
|..=.|+||-+-||||||.+.
T Consensus 19 l~~~~~~lieAPTGsGKTla~ 39 (229)
T 3crv_A 19 LRNNFLVALNAPTGSGKTLFS 39 (229)
T ss_dssp HHTTCEEEEECCTTSSHHHHH
T ss_pred HHCCCEEEEECCCCHHHHHHH
T ss_conf 963993999999975799999
No 251
>>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} (A:1-38,A:88-207)
Probab=64.89 E-value=4.9 Score=19.40 Aligned_cols=22 Identities=18% Similarity=0.415 Sum_probs=17.8
Q ss_pred CEEEEEECCCCHHHHHHHHHHH
Q ss_conf 0235530477406799999999
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTMIL 476 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~iI~ 476 (806)
=-+.+.|-+|+|||-.+|.|+-
T Consensus 7 ~~~~~~g~~g~gk~t~~~~~~~ 28 (158)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFE 28 (158)
T ss_dssp CEEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 2999999899999999999984
No 252
>>2hyd_A ABC transporter homolog; transport protein; HET: ADP; 3.00A {Staphylococcus aureus} (A:329-424,A:496-578)
Probab=64.83 E-value=4 Score=20.11 Aligned_cols=43 Identities=28% Similarity=0.453 Sum_probs=26.9
Q ss_pred EEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHC-CHHHEEEEEECCC
Q ss_conf 785410020235530477406799999999999829-9578478885231
Q gi|254780799|r 447 IIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRM-TPAQCRLIMIDPK 495 (806)
Q Consensus 447 vv~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~-~P~evkliliDPK 495 (806)
+-.++.+==++-|-|.+|||||-.++ +|.+. .|++=+. .+|-+
T Consensus 32 is~~i~~Ge~v~ivG~sGsGKSTl~~-----ll~gl~~p~~G~I-~~~g~ 75 (179)
T 2hyd_A 32 INLSIEKGETVAFVGMSGGGKSTLIN-----LIPRFYDVTSGQI-LIDGH 75 (179)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHT-----TTTTSSCCSEEEE-EETTE
T ss_pred CEEEECCCCEEEEECCCCCCHHHHHH-----HHHCCCCCCCCEE-EECCE
T ss_conf 46998389899998999974999999-----9855276788489-99998
No 253
>>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} (A:1-235)
Probab=64.49 E-value=4 Score=20.11 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=16.2
Q ss_pred EEEEEECCCCHHHHHHHHHHH
Q ss_conf 235530477406799999999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMIL 476 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~ 476 (806)
+++|...||||||.+--..++
T Consensus 61 dviv~apTGsGKT~~~~~~~~ 81 (235)
T 2v1x_A 61 EVFLVMPTGGGKSLCYQLPAL 81 (235)
T ss_dssp CEEEECCTTSCTTHHHHHHHH
T ss_pred CEEEECCCCCHHHHHHHHHHH
T ss_conf 889982897569999999999
No 254
>>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} (A:156-250)
Probab=64.46 E-value=7.6 Score=18.01 Aligned_cols=58 Identities=17% Similarity=0.304 Sum_probs=43.2
Q ss_pred HHHHHHHHC--CCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHH-HCCCCCEEEECHHH
Q ss_conf 999999965--98500014222001177899999999977986802-27887267317125
Q gi|254780799|r 745 QAVDIVLRD--NKASISYIQRRLGIGYNRAASIIENMEEKGVIGPA-SSTGKREILISSME 802 (806)
Q Consensus 745 ~a~~~v~~~--~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~-~g~~~r~vl~~~~~ 802 (806)
.++.++... +..|.+-|.+++.+--..+.|++..||++|+|--. +..-.|.+.+.-.+
T Consensus 7 ~iL~~l~~~~~~~~t~~~la~~l~~~~~~~s~~i~~L~~~G~I~r~~~~~D~R~~~i~lT~ 67 (95)
T 1p4x_A 7 TILAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDD 67 (95)
T ss_dssp HHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECH
T ss_conf 9999998599996769999999788851599999999988998972799888705989898
No 255
>>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis, plasmid; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A (A:1-125)
Probab=64.43 E-value=5.3 Score=19.19 Aligned_cols=44 Identities=23% Similarity=0.162 Sum_probs=28.2
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCCHHH
Q ss_conf 2023553047740679999999999982995784788852310011102770343
Q gi|254780799|r 454 MPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNL 508 (806)
Q Consensus 454 MPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~iPHL 508 (806)
|==+.|.|.||||||--.+.+.- .-...++-.|... +|-++||-
T Consensus 1 mk~ivi~GpsgsGKt~la~~La~-------~~~~~ii~~ds~q----~y~~~~~t 44 (125)
T 2ze6_A 1 MLLHLIYGPTCSGKTDMAIQIAQ-------ETGWPVVALDRVQ----CCPQIATG 44 (125)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH-------HHCCCEEECCSGG----GCGGGTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-------HCCCEEEEEEHHH----HCCCCCEE
T ss_conf 96999979886478999999999-------8799399721676----45999656
No 256
>>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} (A:1-119)
Probab=64.40 E-value=7.9 Score=17.86 Aligned_cols=58 Identities=14% Similarity=0.137 Sum_probs=44.9
Q ss_pred HHHHHHHHHCCC--EEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHC-CCCCEEEECHH
Q ss_conf 999999996598--50001422200117789999999997798680227-88726731712
Q gi|254780799|r 744 KQAVDIVLRDNK--ASISYIQRRLGIGYNRAASIIENMEEKGVIGPASS-TGKREILISSM 801 (806)
Q Consensus 744 ~~a~~~v~~~~~--~s~s~lqr~~~igy~raar~~~~~e~~giv~~~~g-~~~r~vl~~~~ 801 (806)
-..+.++...+. .|.+-|.+++++--+-..|+++.||++|+|--... +-.|.+++.-.
T Consensus 34 ~~vL~~l~~~~~~~~t~~ela~~~~~~~~~vs~~v~~L~~~gli~r~~~~~D~R~~~l~lT 94 (119)
T 3eco_A 34 GHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLT 94 (119)
T ss_dssp HHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEEC
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEECCCC
T ss_conf 9999999955999979999999989688899999999998889651689888892024278
No 257
>>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} (A:)
Probab=64.35 E-value=5.4 Score=19.12 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=19.2
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHH
Q ss_conf 100202355304774067999999
Q gi|254780799|r 451 LARMPHLLIAGTTGSGKSVAINTM 474 (806)
Q Consensus 451 LakMPHLLIAGtTGSGKSV~iN~i 474 (806)
-.||+-.+|.|..|||||--.+.+
T Consensus 9 ~~~~~~I~i~G~~GsGKtT~a~~L 32 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKL 32 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHH
T ss_conf 116858999899999989999999
No 258
>>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} (A:1-192)
Probab=64.32 E-value=3 Score=21.01 Aligned_cols=27 Identities=33% Similarity=0.479 Sum_probs=18.9
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 023553047740679999999999982
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTMILSLLYR 481 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~iI~SlLyk 481 (806)
.|+++-.-||||||.|----++.-+++
T Consensus 32 ~~vi~~apTGsGKTl~~~lp~l~~~~~ 58 (192)
T 2z0m_A 32 KNVVVRAKTGSGKTAAYAIPILELGMK 58 (192)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTCC
T ss_pred CCEEEECCCCHHHHHHHHHHHHHHCCC
T ss_conf 988998799837999999999985898
No 259
>>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} (A:64-267)
Probab=64.32 E-value=4.8 Score=19.49 Aligned_cols=13 Identities=8% Similarity=-0.082 Sum_probs=4.8
Q ss_pred CHHHHHHHHHHHH
Q ss_conf 2566545789999
Q gi|254780799|r 328 SPKVMQNNACTLK 340 (806)
Q Consensus 328 s~eeL~~nA~lLE 340 (806)
.++|+.+--..+.
T Consensus 176 ~~~e~~~~l~~~l 188 (204)
T 1u0j_A 176 TKQEVKDFFRWAK 188 (204)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
T ss_conf 9999999999998
No 260
>>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural genomics, PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} (A:)
Probab=64.32 E-value=7.3 Score=18.13 Aligned_cols=41 Identities=12% Similarity=0.094 Sum_probs=26.2
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEE--EEECCCHH
Q ss_conf 0202355304774067999999999998299578478--88523100
Q gi|254780799|r 453 RMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRL--IMIDPKML 497 (806)
Q Consensus 453 kMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkl--iliDPK~v 497 (806)
+-|=+.|.|-.|||||--++.++..|. +...|. |-.|+-+.
T Consensus 3 ~~~vi~i~G~~GsGKTTll~~l~~~l~----~~g~kV~vi~~D~~~~ 45 (169)
T 1xjc_A 3 AXNVWQVVGYKHSGKTTLXEKWVAAAV----REGWRVGTVKHHGHGG 45 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHH----HTTCCEEEEECCC---
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH----HCCCCEEEECCCCCCC
T ss_conf 765999982999989999999999998----6699515752577565
No 261
>>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular switch, RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus P2} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* (A:89-324)
Probab=64.21 E-value=4.3 Score=19.83 Aligned_cols=29 Identities=21% Similarity=0.386 Sum_probs=22.6
Q ss_pred CCHHHHHHHHHHHHHHHCCEEEEEEECCC
Q ss_conf 10058899999986641423799996577
Q gi|254780799|r 607 RKDIESAVQRLAQMARASGIHVIMATQRP 635 (806)
Q Consensus 607 ~~~ve~~i~rlaq~ara~GiHli~aTqrP 635 (806)
..++.....+|..+|.-.++..++-.|-.
T Consensus 142 ~~~~~~~~~~l~~~~~~~~~~v~~~~~~~ 170 (236)
T 2z43_A 142 QQKLNKHLHQLTRLAEVYDIAVIITNQVM 170 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEEEEEC-
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEEEEE
T ss_conf 99999999999865320473799971265
No 262
>>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MARR), structural genomics, PSI-2; HET: MSE; 2.04A {Oenococcus oeni psu-1} (A:50-100)
Probab=64.07 E-value=5.2 Score=19.24 Aligned_cols=47 Identities=13% Similarity=0.148 Sum_probs=37.1
Q ss_pred EEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHC-CCCCEEEECHHHH
Q ss_conf 0001422200117789999999997798680227-8872673171253
Q gi|254780799|r 757 SISYIQRRLGIGYNRAASIIENMEEKGVIGPASS-TGKREILISSMEE 803 (806)
Q Consensus 757 s~s~lqr~~~igy~raar~~~~~e~~giv~~~~g-~~~r~vl~~~~~~ 803 (806)
+.+-|.+++.+-=+...++++.||++|+|--... .-.|.+++.-.+.
T Consensus 3 t~~~la~~l~~~~~t~s~~i~~Le~~gli~r~~~~~D~R~~~i~LT~k 50 (51)
T 3bro_A 3 LQRDLESEFSIKSSTATVLLQRXEIKKLLYRKVSGKDSRQKCLKLTKK 50 (51)
T ss_dssp BHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHH
T ss_pred CHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCHH
T ss_conf 999999887778236999999998888877501234452022024676
No 263
>>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} (A:1-179)
Probab=64.06 E-value=6.6 Score=18.46 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=21.8
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 0235530477406799999999999
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTMILSLL 479 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~iI~SlL 479 (806)
.|+|..|-+|+|||--..+|.-.+-
T Consensus 52 ~~iLl~GppGtGKT~~A~~la~~~~ 76 (179)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQ 76 (179)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 8178889899889999999998228
No 264
>>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} (A:1-114)
Probab=64.03 E-value=4.9 Score=19.42 Aligned_cols=21 Identities=38% Similarity=0.520 Sum_probs=16.2
Q ss_pred EEEEECCCCHHHHHHHHHHHH
Q ss_conf 355304774067999999999
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMILS 477 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~S 477 (806)
.++.|-+|||||---+.+---
T Consensus 5 I~l~G~pGsGKTT~a~~l~~~ 25 (114)
T 1ltq_A 5 ILTIGCPGSGKSTWAREFIAK 25 (114)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999899999789999999984
No 265
>>3boq_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3} (A:1-133)
Probab=63.80 E-value=3 Score=21.02 Aligned_cols=58 Identities=14% Similarity=0.240 Sum_probs=46.2
Q ss_pred HHHHHHHHC-CCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHC-CCCCEEEECHHH
Q ss_conf 999999965-9850001422200117789999999997798680227-887267317125
Q gi|254780799|r 745 QAVDIVLRD-NKASISYIQRRLGIGYNRAASIIENMEEKGVIGPASS-TGKREILISSME 802 (806)
Q Consensus 745 ~a~~~v~~~-~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~~g-~~~r~vl~~~~~ 802 (806)
.++.++.+. +..+.+-|.+++.+-.+-..|+++.||++|+|--..+ +-.|.+++.-.+
T Consensus 51 ~il~~l~~~~~~~t~~~la~~l~i~~~~vs~~i~~Le~~GlI~r~~~~~DrR~~~i~lT~ 110 (133)
T 3boq_A 51 DAXAQLARNPDGLSXGKLSGALKVTNGNVSGLVNRLIKDGXVVKAXSADDRRSFSAKLTD 110 (133)
T ss_dssp HHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC--------CEEEECH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECH
T ss_conf 999999858999889999988777898999999999868886761066767514777898
No 266
>>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} (A:1-231)
Probab=63.58 E-value=8.7 Score=17.55 Aligned_cols=29 Identities=28% Similarity=0.405 Sum_probs=22.3
Q ss_pred EEEECCCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 78541002023553047740679999999
Q gi|254780799|r 447 IIADLARMPHLLIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 447 vv~DLakMPHLLIAGtTGSGKSV~iN~iI 475 (806)
+-.++.+=-.+-|.|-.|||||..+++|.
T Consensus 22 vs~~i~~Ge~~~iiG~sGsGKSTll~~i~ 50 (231)
T 2it1_A 22 INLKIKDGEFMALLGPSGSGKSTLLYTIA 50 (231)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEECCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 18799999899999999982999999997
No 267
>>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} (A:1-73,A:153-290)
Probab=63.55 E-value=5.1 Score=19.32 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=21.3
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEE
Q ss_conf 3553047740679999999999982995784788
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLI 490 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkli 490 (806)
++|.|..|||||--.+.+ ...|.+..+..+|-+
T Consensus 34 igi~G~QGsGKTT~~~~L-~~~L~~~~~~~lkv~ 66 (211)
T 1odf_A 34 IFFSGPQGSGKSFTSIQI-YNHLMEKYGGEKSIG 66 (211)
T ss_dssp EEEECCTTSSHHHHHHHH-HHHHHHHHGGGSCEE
T ss_pred EEEECCCCCCHHHHHHHH-HHHHHHHCCCCCEEE
T ss_conf 983789878899999999-999997507887079
No 268
>>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} (A:1-123,A:293-359)
Probab=63.53 E-value=7.8 Score=17.91 Aligned_cols=39 Identities=10% Similarity=-0.017 Sum_probs=24.4
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 576203661353320012455563256654578999999742486328
Q gi|254780799|r 304 TGTFVLPSKEILSTSQSPVNQMTFSPKVMQNNACTLKSVLSDFGIQGE 351 (806)
Q Consensus 304 ~~~YkLPsLdLL~~~~~~~~~~~~s~eeL~~nA~lLE~tL~dFGVe~~ 351 (806)
...+.+|++=|||+|.. ..|... .+.+.+.+++.|.-+=
T Consensus 118 p~~~~lp~illlDEpt~-----~LD~~~----~~~~~~~~~~~g~tvi 156 (190)
T 2o5v_A 118 PEDSELDPVLLLDDFTA-----ELDPHR----RQYLLDLAASVPQAIV 156 (190)
T ss_dssp TTTTHHCCEEEECCGGG-----CCCHHH----HHHHHHHHHHSSEEEE
T ss_pred CHHHHHCCEEEEECCCC-----CCCHHH----HHHHHHHHCCCCEEEE
T ss_conf 10133298899967101-----689999----9999998545994999
No 269
>>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structural genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B} (A:30-120)
Probab=63.48 E-value=9.1 Score=17.42 Aligned_cols=58 Identities=9% Similarity=0.187 Sum_probs=46.1
Q ss_pred HHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCCC-CCEEEE--CHHH
Q ss_conf 999999965985000142220011778999999999779868022788-726731--7125
Q gi|254780799|r 745 QAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPASSTG-KREILI--SSME 802 (806)
Q Consensus 745 ~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~~g~~-~r~vl~--~~~~ 802 (806)
.++.++.+.+..|.+-|-+++.+-=.-+.|+++.||++|+|--..... .|.+++ ++..
T Consensus 6 ~iL~~l~~~~~~t~~eia~~l~~~~~~vs~~i~~L~~~g~i~~~~~~~D~R~~~i~lT~~G 66 (91)
T 3g3z_A 6 AVLYTLATEGSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETG 66 (91)
T ss_dssp HHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCHHEEECCCCCCHHHHCCCHHH
T ss_conf 9999999869949999999989789899999999983100200026655640321138889
No 270
>>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, PSI, protein structure initiative; 1.80A {Pseudomonas aeruginosa} (A:35-101)
Probab=63.29 E-value=8.6 Score=17.59 Aligned_cols=56 Identities=13% Similarity=0.226 Sum_probs=44.0
Q ss_pred HHHHHHHHCCC-EEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHC-CCCCEEEECH
Q ss_conf 99999996598-50001422200117789999999997798680227-8872673171
Q gi|254780799|r 745 QAVDIVLRDNK-ASISYIQRRLGIGYNRAASIIENMEEKGVIGPASS-TGKREILISS 800 (806)
Q Consensus 745 ~a~~~v~~~~~-~s~s~lqr~~~igy~raar~~~~~e~~giv~~~~g-~~~r~vl~~~ 800 (806)
.++.++...+. .+.+-|-+++.+-=....|+++.||++|+|--... .-.|.+++.-
T Consensus 7 ~vL~~l~~~~~~~t~~~la~~~~~~~~tvs~~i~~L~~~G~I~r~~~~~D~R~~~i~l 64 (67)
T 2fbh_A 7 LVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVL 64 (67)
T ss_dssp HHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEE
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEE
T ss_conf 9999998759996599999998978988999999997656614404468888578788
No 271
>>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, shikimate pathway, nucleotide-binding, amino-acid biosynthesis; 2.10A {Aquifex aeolicus} (A:)
Probab=63.22 E-value=3.4 Score=20.59 Aligned_cols=20 Identities=25% Similarity=0.334 Sum_probs=14.6
Q ss_pred CEEEEEECCCCHHHHHHHHH
Q ss_conf 02355304774067999999
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTM 474 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~i 474 (806)
.|++|.|..|||||-.-..+
T Consensus 1 ~~I~i~G~~GsGKTTla~~L 20 (168)
T 2pt5_A 1 XRIYLIGFXCSGKSTVGSLL 20 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
T ss_conf 98999889999889999999
No 272
>>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} (A:)
Probab=63.16 E-value=6 Score=18.73 Aligned_cols=26 Identities=23% Similarity=0.255 Sum_probs=21.9
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 02023553047740679999999999
Q gi|254780799|r 453 RMPHLLIAGTTGSGKSVAINTMILSL 478 (806)
Q Consensus 453 kMPHLLIAGtTGSGKSV~iN~iI~Sl 478 (806)
+..+++|.|..|+|||--+|.+.-+=
T Consensus 21 ~~~ki~ivG~~~vGKSsLi~~l~~~~ 46 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 55699999999999899999998195
No 273
>>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A (A:1-121)
Probab=63.14 E-value=5.9 Score=18.81 Aligned_cols=56 Identities=21% Similarity=0.356 Sum_probs=43.8
Q ss_pred HHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHH-HCCCCCEEEECHHH
Q ss_conf 999996598500014222001177899999999977986802-27887267317125
Q gi|254780799|r 747 VDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPA-SSTGKREILISSME 802 (806)
Q Consensus 747 ~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~-~g~~~r~vl~~~~~ 802 (806)
+=.++..+..|.+-|=+++.+--.-+.|+++.||++|+|--. +....|.+++.-.+
T Consensus 42 vL~~l~~~~~t~~~la~~~~~~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~i~lT~ 98 (121)
T 2gxg_A 42 VLRATSDGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVRDREDRRKILIEITE 98 (121)
T ss_dssp HHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECH
T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHEECCCH
T ss_conf 999998599799999999897987999999999878882342365556401001457
No 274
>>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* (A:)
Probab=62.95 E-value=5.1 Score=19.31 Aligned_cols=153 Identities=12% Similarity=-0.010 Sum_probs=68.9
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 35530477406799999999999829957847888523100111027703431223343045668999999999999999
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEMEERYQK 536 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~iPHLl~pVvTd~~kA~~aL~w~V~EMe~RY~l 536 (806)
.+|.|.+|||||..--.++.+.+-+.. +.+.++ .+.-|..+ .......|-+.+...|..+
T Consensus 23 ~~I~G~pGsGKT~l~~q~~~~~~~~~~----~~~~~~--------~e~~~~~~--------~~~~~~~~~~~~~~~~~~~ 82 (220)
T 2cvh_A 23 TQVYGPYASGKTTLALQTGLLSGKKVA----YVDTEG--------GFSPERLV--------QMAETRGLNPEEALSRFIL 82 (220)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCSEEE----EEESSC--------CCCHHHHH--------HHHHTTTCCHHHHHHHEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCCCC----EEEEEE--------CHHHHHHH--------HHHHHHCCCCCCCCCCCEE
T ss_conf 999918999899999999998535774----267870--------11099999--------9998736552224320135
Q ss_pred HHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCC--HHHHHH
Q ss_conf 987089968999999998874478667754467765454322233223234698687763446888873210--058899
Q gi|254780799|r 537 MSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVARK--DIESAV 614 (806)
Q Consensus 537 ~a~~~vRni~~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ivviiDElaDlmm~~~~--~ve~~i 614 (806)
+....+......=+....... .....--+..++|-+.+......+ +.-...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (220)
T 2cvh_A 83 FTPSDFKEQRRVIGSLKKTVD---------------------------SNFALVVVDSITAHYRAEENRSGLIAELSRQL 135 (220)
T ss_dssp ECCTTTSHHHHHHHHHHHHCC---------------------------TTEEEEEEECCCCCTTGGGGSSTTHHHHHHHH
T ss_pred EECCHHHHHHHHHHHHHHHHC---------------------------CCCEEEEEHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 422316778999987664312---------------------------46348996145566640112367777889999
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCC-------CCCHHHHHCCCCEEEEEE
Q ss_conf 999986641423799996577753-------554355411025158764
Q gi|254780799|r 615 QRLAQMARASGIHVIMATQRPSVD-------VITGTIKANFPTRISFQV 656 (806)
Q Consensus 615 ~rlaq~ara~GiHli~aTqrPsvd-------vitg~ikan~p~riaf~v 656 (806)
.+|.++++..++-.++-+|-.... .-...+....-.|+-+.-
T Consensus 136 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~l~~ 184 (220)
T 2cvh_A 136 QVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDK 184 (220)
T ss_dssp HHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEE
T ss_pred HHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEEE
T ss_conf 9997678874853104134540476553433576301020559999996
No 275
>>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, structural genomics, PSI-2; 2.01A {Silicibacter pomeroyi dss-3} (A:1-125)
Probab=62.94 E-value=8.3 Score=17.72 Aligned_cols=59 Identities=10% Similarity=0.082 Sum_probs=48.3
Q ss_pred HHHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHH-HCCCCCEEEECHHH
Q ss_conf 999999996598500014222001177899999999977986802-27887267317125
Q gi|254780799|r 744 KQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPA-SSTGKREILISSME 802 (806)
Q Consensus 744 ~~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~-~g~~~r~vl~~~~~ 802 (806)
-.++..+...+..|.+-|-+++.+==.-+.|+++.||++|+|--. +..-.|.+++.-.+
T Consensus 43 ~~iL~~l~~~~~~t~~~la~~~~~~~~~vs~~i~~L~~~GlV~r~~~~~D~R~~~i~LT~ 102 (125)
T 3bj6_A 43 RAILEGLSLTPGATAPQLGAALQXKRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTP 102 (125)
T ss_dssp HHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCEEEEECCCCCCHHHCCCCH
T ss_conf 999999998699899999999886575899999999870655765526755101002567
No 276
>>3bwg_A Uncharacterized HTH-type transcriptional regulator YYDK; APC85486, structural genomics, PSI-2, protein structure initiative; 2.09A {Bacillus subtilis subsp} (A:1-82)
Probab=62.82 E-value=5.2 Score=19.23 Aligned_cols=56 Identities=18% Similarity=0.208 Sum_probs=42.0
Q ss_pred CCHHHHHHHHHHHHC---------CCE-EEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCCCCC
Q ss_conf 770389999999965---------985-00014222001177899999999977986802278872
Q gi|254780799|r 739 ADDLYKQAVDIVLRD---------NKA-SISYIQRRLGIGYNRAASIIENMEEKGVIGPASSTGKR 794 (806)
Q Consensus 739 ~d~l~~~a~~~v~~~---------~~~-s~s~lqr~~~igy~raar~~~~~e~~giv~~~~g~~~r 794 (806)
..++|++..+.+... .+- |..-|.++|.++-+-+-+-+++|+.+|+|-...|.|.+
T Consensus 3 ~~~~~~~v~~~l~~~I~~g~~~~G~~LPs~~~la~~~~vSr~tvr~Al~~L~~~G~i~~~~~~G~~ 68 (82)
T 3bwg_A 3 AXLKYQQIATEIETYIEEHQLQQGDKLPVLETLXAQFEVSKSTITKSLELLEQKGAIFQVRGSGIF 68 (82)
T ss_dssp -----CHHHHHHHHHHHHTTCCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETTTEEE
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCEEE
T ss_conf 647999999999999984999992999069999999893999999999999986121514885579
No 277
>>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP; HET: ADP; 1.70A {Leishmania major strain friedlin} (A:)
Probab=62.72 E-value=6 Score=18.76 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=16.5
Q ss_pred CCCEEEEEECCCCHHHHHHHHH
Q ss_conf 0202355304774067999999
Q gi|254780799|r 453 RMPHLLIAGTTGSGKSVAINTM 474 (806)
Q Consensus 453 kMPHLLIAGtTGSGKSV~iN~i 474 (806)
+-+.++|.|..|||||---..+
T Consensus 9 ~~~~I~i~G~~GsGKSTla~~L 30 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMI 30 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
T ss_conf 9987999829999989999999
No 278
>>3bos_A Putative DNA replication factor; YP_927791.1, putative DNA replication regulator HDA, structural genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis SB2B} (A:1-175)
Probab=62.67 E-value=5.8 Score=18.87 Aligned_cols=45 Identities=11% Similarity=0.126 Sum_probs=29.0
Q ss_pred EEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCC
Q ss_conf 6877634468888732100588999999866414237999965777
Q gi|254780799|r 591 YIVVVIDEMADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPS 636 (806)
Q Consensus 591 ~ivviiDElaDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPs 636 (806)
.-|++|||+--+. .....-+.....+.|.-..-..=+|++|++|-
T Consensus 105 ~~iL~iDeid~~~-~~~~~~~~~~~~l~~~~~~~~~~~i~tsn~~~ 149 (175)
T 3bos_A 105 FDLICIDDVDAVA-GHPLWEEAIFDLYNRVAEQKRGSLIVSASASP 149 (175)
T ss_dssp SSEEEEETGGGGT-TCHHHHHHHHHHHHHHHHHCSCEEEEEESSCT
T ss_pred CCCCCHHHHHHCC-CCCHHHHHHHHHHHHHCCCCCCEEECCCCCCC
T ss_conf 0221301454313-53124788888875113335540002356674
No 279
>>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} (A:)
Probab=62.64 E-value=9.4 Score=17.31 Aligned_cols=121 Identities=18% Similarity=0.231 Sum_probs=66.1
Q ss_pred ECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHE---EEEEECCCHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 41002023553047740679999999999982995784---788852310011102770343122334304566899999
Q gi|254780799|r 450 DLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQC---RLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWL 526 (806)
Q Consensus 450 DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~ev---kliliDPK~vEls~Y~~iPHLl~pVvTd~~kA~~aL~w~ 526 (806)
...+-+|+|..|..|+||+-...++--.|..+..+... +...+|---.+ ...--
T Consensus 39 ~~~~~~~~Ll~GppGtGKT~~A~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~ 95 (195)
T 1jbk_A 39 QRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALV-----------------------AGAKY 95 (195)
T ss_dssp TSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHH-----------------------TTTCS
T ss_pred HCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCHHHCCCEEEEEEHHHHH-----------------------CCCCC
T ss_conf 3568899468607987828999999999980799988828768996699986-----------------------36873
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHC
Q ss_conf 99999999999870899689999999988744786677544677654543222332232346986877634468888732
Q gi|254780799|r 527 VCEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVA 606 (806)
Q Consensus 527 V~EMe~RY~l~a~~~vRni~~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ivviiDElaDlmm~~ 606 (806)
+.+.+++ +....+.. ... -..-|++|||+--+-+..
T Consensus 96 ~g~~~~~-----------~~~~~~~~---~~~------------------------------~~~~il~iDEid~~~~~~ 131 (195)
T 1jbk_A 96 RGEFEER-----------LKGVLNDL---AKQ------------------------------EGNVILFIDELHTMVGAG 131 (195)
T ss_dssp HHHHHHH-----------HHHHHHHH---HHS------------------------------TTTEEEEEETGGGGTT--
T ss_pred CHHHHHH-----------HHHHHHHH---HCC------------------------------CCCEEEEECHHHHHHCCC
T ss_conf 0457999-----------99999998---516------------------------------997799843588885167
Q ss_pred CCHH-HHHHHHHHHHHHHCCEEEEEEECCCCC
Q ss_conf 1005-889999998664142379999657775
Q gi|254780799|r 607 RKDI-ESAVQRLAQMARASGIHVIMATQRPSV 637 (806)
Q Consensus 607 ~~~v-e~~i~rlaq~ara~GiHli~aTqrPsv 637 (806)
..+. ...+--|-+.--.-..++|.||.++..
T Consensus 132 ~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~ 163 (195)
T 1jbk_A 132 KADGAMDAGNMLKPALARGELHCVGATTLDEY 163 (195)
T ss_dssp ----CCCCHHHHHHHHHTTSCCEEEEECHHHH
T ss_pred CCCCCCCHHHHHHHHHHCCCCEEEECCCHHHH
T ss_conf 77775238999999984798338741899999
No 280
>>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} (C:92-279)
Probab=62.64 E-value=5 Score=19.32 Aligned_cols=65 Identities=17% Similarity=0.127 Sum_probs=41.7
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCC-------CCHHHHCCCCCCHHHHHHH
Q ss_conf 235530477406799999999999829957847888523100111027-------7034312233430456689
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYD-------GIPNLLTPVVTNPQKAVTV 522 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~-------~iPHLl~pVvTd~~kA~~a 522 (806)
.+-+=|.+|||||--+|.|. -+|+-+=-+|.+.-.|+....-..+. ..|++..........+..+
T Consensus 10 iv~ivGpnGsGKSTll~~l~--~~~~p~~G~V~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (188)
T 2v3c_C 10 VILLVGIQGSGKTTTAAKLA--RYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVK 81 (188)
T ss_dssp CEEEECCSSSSTTHHHHHHH--HHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHH
T ss_pred EEEEECCCCCCCHHHHHHHH--HHHHHCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCEECCCCCCCCHHHHHH
T ss_conf 79961231236207889999--9999779974378631112221020366500157500056444330679999
No 281
>>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} (B:)
Probab=62.58 E-value=6.6 Score=18.46 Aligned_cols=51 Identities=22% Similarity=0.250 Sum_probs=31.3
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCC
Q ss_conf 020235530477406799999999999829957847888523100111027
Q gi|254780799|r 453 RMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYD 503 (806)
Q Consensus 453 kMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~ 503 (806)
+-|.++|.|-+|+|||--+|.+...=.-..++..---..++..-.++..++
T Consensus 11 ~~~kv~iiG~~~vGKSSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 61 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVD 61 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTGGGSSCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEEEEEEECCEEEEEEE
T ss_conf 897899999999999999999967988981787104899971884899996
No 282
>>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding protein, helix-turn-helix, phosphotransferase system, metalloprotein; 2.70A {Escherichia coli} (A:1-82,A:382-406)
Probab=62.49 E-value=8.7 Score=17.54 Aligned_cols=42 Identities=10% Similarity=0.059 Sum_probs=38.7
Q ss_pred HHHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 999999996598500014222001177899999999977986
Q gi|254780799|r 744 KQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVI 785 (806)
Q Consensus 744 ~~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv 785 (806)
....+++.+.+..|-+-|-+++.+--.-..++++.|+++|+|
T Consensus 19 ~~IL~lL~~~g~~Sr~eLA~~lgLS~~TVs~iv~eL~e~GlV 60 (107)
T 1z6r_A 19 GAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEXLEAHLV 60 (107)
T ss_dssp HHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCE
T ss_conf 999999998599189999988795999999999999988988
No 283
>>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* (A:374-660)
Probab=62.44 E-value=4.8 Score=19.50 Aligned_cols=208 Identities=16% Similarity=0.257 Sum_probs=94.1
Q ss_pred ECCCCCEEEEEECCCCHHHHHHHHHHHH-------H------HHHCCHHH----EEEEEECCCHHHHHHCCCCHHHHCCC
Q ss_conf 4100202355304774067999999999-------9------98299578----47888523100111027703431223
Q gi|254780799|r 450 DLARMPHLLIAGTTGSGKSVAINTMILS-------L------LYRMTPAQ----CRLIMIDPKMLELSVYDGIPNLLTPV 512 (806)
Q Consensus 450 DLakMPHLLIAGtTGSGKSV~iN~iI~S-------l------Lyk~~P~e----vkliliDPK~vEls~Y~~iPHLl~pV 512 (806)
.+.+==++-|-|.+|||||.-++.|.-= + +-..+|.+ +-++.=||.....++.+.|--- .|=
T Consensus 39 ~i~~Ge~i~ivG~sGsGKSTll~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~p~lf~~ti~eNi~~g-~~~ 117 (287)
T 3g5u_A 39 KVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYG-RED 117 (287)
T ss_dssp EECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHH-CSS
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCHHCCHHHHHHHCCCCCCCCEEECCCCCCCCCCC-CCH
T ss_conf 0247855785389851478999986345757784499778660010254422102346787611367101144447-602
Q ss_pred CCCHHHHHHHHHH-----HHHHHHHHHHHHHHCCCCCHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3430456689999-----99999999999987089968999-99999887447866775446776545432223322323
Q gi|254780799|r 513 VTNPQKAVTVLKW-----LVCEMEERYQKMSKIGVRNIDGF-NLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDF 586 (806)
Q Consensus 513 vTd~~kA~~aL~w-----~V~EMe~RY~l~a~~~vRni~~y-N~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (806)
+++ .+...+++. .+..+...|+..-..+-.++.|= -+|+.-|++-
T Consensus 118 ~~~-~~i~~~~~~~~~~~~i~~L~~g~~t~i~~~g~~LSGGQkQRialARal---------------------------- 168 (287)
T 3g5u_A 118 VTM-DEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARAL---------------------------- 168 (287)
T ss_dssp CCH-HHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHH----------------------------
T ss_pred HHH-HHHHHHHHHHCCHHHHHCCCCCCCCEECCCCCCCCHHHHHHHHHHHHH----------------------------
T ss_conf 567-787799999624035433854466675789875889999999999988----------------------------
Q ss_pred CCCCEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHCCCCEEEEEECCCCCCHHHC
Q ss_conf 46986877634468888732100588999999866414237999965777535543554110251587645866421233
Q gi|254780799|r 587 QHMPYIVVVIDEMADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRISFQVSSKIDSRTIL 666 (806)
Q Consensus 587 ~~lp~ivviiDElaDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPsvdvitg~ikan~p~riaf~v~s~~dSrtil 666 (806)
-.-|- |+|.||=--=+ -.+.|..|..+-.+.| -|--.|+-|+|++ -...--||-+ +|--.|.
T Consensus 169 ~~~~~-ililDEpts~L---D~~t~~~i~~~l~~~~-~~~T~i~VtH~l~--------~l~~aD~I~v-----l~~G~i~ 230 (287)
T 3g5u_A 169 VRNPK-ILLLDEATSAL---DTESEAVVQAALDKAR-EGRTTIVIAHRLS--------TVRNADVIAG-----FDGGVIV 230 (287)
T ss_dssp HHCCS-EEEEESTTCSS---CHHHHHHHHHHHHHHH-TTSEEEEECSCHH--------HHTTCSEEEE-----CSSSCCC
T ss_pred HCCCC-EEEEECCCCCC---CHHHHHHHHHHHHHHH-CCCEEEEEECCHH--------HHHHHHHHCC-----CCCCEEE
T ss_conf 21899-89997875448---9899999999999860-6997999958877--------8998631302-----6698899
Q ss_pred CCCCHHHHCCCCCEEE---E-C-CCCCEEEEEECCCCHHHHHHH
Q ss_conf 8864578658875477---3-6-898325888334898899999
Q gi|254780799|r 667 GEQGAEQLLGQGDMLY---M-T-GGGRVQRIHGPFVSDIEVEKV 705 (806)
Q Consensus 667 d~~gae~Llg~gdml~---~-~-~~~~~~r~~g~~v~~~ev~~v 705 (806)
.+.-.++|+-+.+..| . . ++.....-.-|..+.+++..+
T Consensus 231 ~~G~~~eL~~~~~~y~~~~~~~~~~~~~~~~~~a~~~~~~~~~l 274 (287)
T 3g5u_A 231 EQGNHDELMREKGIYFKLVMTQTAGNEIELGNEACKSKDEIDNL 274 (287)
T ss_dssp CEECHHHHHHTTSHHHHHHHHTC---------------------
T ss_pred EECCHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCC
T ss_conf 94666887751729999999865046653455433451000131
No 284
>>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* (D:134-393)
Probab=62.39 E-value=6.6 Score=18.46 Aligned_cols=92 Identities=16% Similarity=0.203 Sum_probs=56.6
Q ss_pred HHCCEEEEEEECCC----CCCCC-CHHHHHCCCCEEEEEE---------------CCCCCCHHHCCCCC---HHHHCCCC
Q ss_conf 41423799996577----75355-4355411025158764---------------58664212338864---57865887
Q gi|254780799|r 622 RASGIHVIMATQRP----SVDVI-TGTIKANFPTRISFQV---------------SSKIDSRTILGEQG---AEQLLGQG 678 (806)
Q Consensus 622 ra~GiHli~aTqrP----svdvi-tg~ikan~p~riaf~v---------------~s~~dSrtild~~g---ae~Llg~g 678 (806)
+.....+-+...+= -.|.= +..+=+++-.|--|.+ ....|.....+..+ =+--|+-|
T Consensus 131 ~~~~~~l~ig~~gs~t~~h~~~d~~~~~~~~i~G~K~~~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pG 210 (260)
T 3kv5_D 131 PFVQKYCLMGVQDSYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTDENLARYESWSSSVTQSEVFFGDKVDKCYKCVVKQG 210 (260)
T ss_dssp CCCSCEEEEECTTCEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHTCSSGGGSCGGGSSSCCEEEEEETT
T ss_pred CCEEEEEEEECCCCCCCEEECCCCCEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHCHHHCCCEEEEEECCC
T ss_conf 87067999934998886258789871589987322999996987346211246566654210002021353399998799
Q ss_pred CEEEECCCC-CEE-------EEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 547736898-325-------88833489889999999997128
Q gi|254780799|r 679 DMLYMTGGG-RVQ-------RIHGPFVSDIEVEKVVSHLKTQG 713 (806)
Q Consensus 679 dml~~~~~~-~~~-------r~~g~~v~~~ev~~v~~~~~~q~ 713 (806)
||||+|+|- .-+ =+..-|.+........++.+.+.
T Consensus 211 D~LyiP~gw~H~v~~~~~sisvs~~~~~~~~~~~~~~~~~~~~ 253 (260)
T 3kv5_D 211 HTLFVPTGWIHAVLTSQDCMAFGGNFLHNLNIGMQLRCYEMEK 253 (260)
T ss_dssp CEEEECTTCEEEEEEEEEEEEEEEEECCSTTHHHHHHHHHHHH
T ss_pred CEEEECCCCEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 7899579944999846357997651577656588999999887
No 285
>>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* (A:43-302)
Probab=62.39 E-value=6.6 Score=18.46 Aligned_cols=92 Identities=16% Similarity=0.208 Sum_probs=56.1
Q ss_pred HHCCEEEEEEECCC----CCCCC-CHHHHHCCCCEEEEEE---------------CCCCCCHHHCCCC---CHHHHCCCC
Q ss_conf 41423799996577----75355-4355411025158764---------------5866421233886---457865887
Q gi|254780799|r 622 RASGIHVIMATQRP----SVDVI-TGTIKANFPTRISFQV---------------SSKIDSRTILGEQ---GAEQLLGQG 678 (806)
Q Consensus 622 ra~GiHli~aTqrP----svdvi-tg~ikan~p~riaf~v---------------~s~~dSrtild~~---gae~Llg~g 678 (806)
+.....+-+...+= -.|.= +..+=+++-.|--|.+ ....|.....+.. +=+--|+-|
T Consensus 131 ~~~~~~l~ig~~gs~t~~h~~~d~~~~~~~~i~G~K~~~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pG 210 (260)
T 3kv9_A 131 PFVQKYCLMGVQDSYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTDENLARYESWSSSVTQSEVFFGDKVDKCYKCVVKQG 210 (260)
T ss_dssp CCCSCEEEEECTTCEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHTSGGGGGSCGGGGSSCCEEEEEETT
T ss_pred CCCEEEEEECCCCCCCCEEECCCCCCEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHCCCEEEEEECCC
T ss_conf 87257999848998898668489984789997337999995897456543555555554221362453564599998899
Q ss_pred CEEEECCCC-CEE-------EEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 547736898-325-------88833489889999999997128
Q gi|254780799|r 679 DMLYMTGGG-RVQ-------RIHGPFVSDIEVEKVVSHLKTQG 713 (806)
Q Consensus 679 dml~~~~~~-~~~-------r~~g~~v~~~ev~~v~~~~~~q~ 713 (806)
||||+|+|- .-+ =+..-|.+........++.+.+.
T Consensus 211 D~LyiP~gw~H~v~~~~~sisvs~~~~~~~~~~~~~~~~~~~~ 253 (260)
T 3kv9_A 211 HTLFVPTGWIHAVLTSQDCMAFGGNFLHNLNIGMQLRCYEMEK 253 (260)
T ss_dssp CEEEECTTCEEEEEEEEEEEEEEEEECCSTTHHHHHHHHHHHH
T ss_pred CEEEECCCCEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf 7898579970899606665898156667532377888998776
No 286
>>3h0k_A UPF0200 protein SSO1041; adenylate, kinase, structural genomics, PSI-2, protein structure initiative; 3.25A {Sulfolobus solfataricus} (A:)
Probab=62.30 E-value=5.5 Score=19.07 Aligned_cols=18 Identities=44% Similarity=0.659 Sum_probs=14.7
Q ss_pred EEEEECCCCHHHHHHHHH
Q ss_conf 355304774067999999
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTM 474 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~i 474 (806)
+.|.|..|||||-..+.+
T Consensus 3 I~i~G~~GsGKsT~a~~L 20 (178)
T 3h0k_A 3 ILITGMPGSGKSEFAKLL 20 (178)
T ss_dssp EEEECCTTSCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
T ss_conf 999899999999999999
No 287
>>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} (A:1-169)
Probab=62.29 E-value=3.4 Score=20.61 Aligned_cols=20 Identities=35% Similarity=0.592 Sum_probs=15.3
Q ss_pred CEEEEEECCCCHHHHHHHHH
Q ss_conf 02355304774067999999
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTM 474 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~i 474 (806)
|-+++.|..|||||---..+
T Consensus 3 ~~I~i~G~~GsGKtTiA~~L 22 (169)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRL 22 (169)
T ss_dssp CSEEEECSTTSSHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHH
T ss_conf 98999889999889999999
No 288
>>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, cytoplasm, DNA damage, DNA recombination; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... (A:35-271)
Probab=62.20 E-value=9.1 Score=17.41 Aligned_cols=45 Identities=13% Similarity=0.121 Sum_probs=30.5
Q ss_pred EEEEHHHHHHHHHHC--CCHHHHHHHHHHHHHHHCCEEEEEEECCCC
Q ss_conf 877634468888732--100588999999866414237999965777
Q gi|254780799|r 592 IVVVIDEMADLMMVA--RKDIESAVQRLAQMARASGIHVIMATQRPS 636 (806)
Q Consensus 592 ivviiDElaDlmm~~--~~~ve~~i~rlaq~ara~GiHli~aTqrPs 636 (806)
..+++|.+-+..+.. .+.....+..|...+...++..++..|...
T Consensus 119 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 165 (237)
T 2zr9_A 119 PRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELRE 165 (237)
T ss_dssp CHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-
T ss_pred CHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEE
T ss_conf 88887432265426599999999999999987535928999733431
No 289
>>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* (A:)
Probab=62.18 E-value=5.8 Score=18.88 Aligned_cols=108 Identities=20% Similarity=0.274 Sum_probs=53.3
Q ss_pred CCCCCCEEEEECC----CCCEEEEEECCCCHHHHHHHHHHHHHHHH-CCHHHEEEEEECCCHH---------HHHHCCCC
Q ss_conf 5666666785410----02023553047740679999999999982-9957847888523100---------11102770
Q gi|254780799|r 440 KSIEGKPIIADLA----RMPHLLIAGTTGSGKSVAINTMILSLLYR-MTPAQCRLIMIDPKML---------ELSVYDGI 505 (806)
Q Consensus 440 KdI~G~pvv~DLa----kMPHLLIAGtTGSGKSV~iN~iI~SlLyk-~~P~evkliliDPK~v---------Els~Y~~i 505 (806)
-...|.|++-|+. +==-+-|.|..|||||--++. |+. .+|++=+ |.++.++. .-++++.+
T Consensus 46 ~s~~g~~vL~~isf~i~~Ge~v~iiG~nGsGKSTLlk~-----l~G~~~p~~G~-I~~~gri~~~~q~~~l~~~ti~eni 119 (290)
T 2bbs_A 46 FSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMM-----IMGELEPSEGK-IKHSGRISFCSQNSWIMPGTIKENI 119 (290)
T ss_dssp ----CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHH-----HTTSSCEEEEE-EECCSCEEEECSSCCCCSSBHHHHH
T ss_pred CCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHH-----HHCCCCCCCCE-EEECCEEEEEECCCCCCCCCHHHHH
T ss_conf 69899834636589984998999999998709999999-----95577788888-9999999998165400676421233
Q ss_pred HHHHCCCCCCHHHHHHHHHHHH-HHHH----HHHHHHHHCCCCCHHHHHH-HHHHHHH
Q ss_conf 3431223343045668999999-9999----9999998708996899999-9998874
Q gi|254780799|r 506 PNLLTPVVTNPQKAVTVLKWLV-CEME----ERYQKMSKIGVRNIDGFNL-KVAQYHN 557 (806)
Q Consensus 506 PHLl~pVvTd~~kA~~aL~w~V-~EMe----~RY~l~a~~~vRni~~yN~-k~~~~~~ 557 (806)
+ .+.-|....-.++++|. .|.- .+++..-..+..++.+=++ |+.-|++
T Consensus 120 ---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LSgGqrqRv~lAra 173 (290)
T 2bbs_A 120 ---I-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARA 173 (290)
T ss_dssp ---H-TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHH
T ss_pred ---H-CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCHHHHHHHHHHHH
T ss_conf ---3-36823778999999987799999561111102221356679888445897578
No 290
>>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structural genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3} (A:31-133)
Probab=62.14 E-value=3.6 Score=20.42 Aligned_cols=58 Identities=10% Similarity=0.268 Sum_probs=46.1
Q ss_pred HHHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHH-HCCCCCEEEECHH
Q ss_conf 999999996598500014222001177899999999977986802-2788726731712
Q gi|254780799|r 744 KQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPA-SSTGKREILISSM 801 (806)
Q Consensus 744 ~~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~-~g~~~r~vl~~~~ 801 (806)
-.++..+...+..+.+-|.+++.+==.-+.|+++.||++|+|--. +..-.|.+.+...
T Consensus 16 ~~iL~~i~~~~~~t~~~la~~~~~~~~~vsr~i~~L~~~g~i~r~~~~~D~R~~~i~lT 74 (103)
T 3cdh_A 16 WRVLACLVDNDAXXITRLAKLSLXEQSRXTRIVDQXDARGLVTRVADAKDKRRVRVRLT 74 (103)
T ss_dssp HHHHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC------CCCEEEC
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHHHHHHCCCEEEECCCCCCCEEEEEEC
T ss_conf 99999998188959999999968886436556999872224354236788861688877
No 291
>>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, structural genomics, PSI-2; 2.35A {Corynebacterium glutamicum atcc 13032} (A:1-194)
Probab=62.07 E-value=8.4 Score=17.66 Aligned_cols=47 Identities=11% Similarity=0.132 Sum_probs=34.2
Q ss_pred EEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCC
Q ss_conf 854100202355304774067999999999998299578478885231
Q gi|254780799|r 448 IADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPK 495 (806)
Q Consensus 448 v~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK 495 (806)
+..+.+=+=.+++|-||+||+=..-++..+| |+..+..-++++-.|=
T Consensus 16 v~~~~~~~~~l~~Gp~GtGKT~lA~~la~~l-~~~~~~~~~~~~~~~~ 62 (194)
T 3b85_A 16 VDAIDTNTIVFGLGPAGSGKTYLAXAKAVQA-LQSKQVSRIILTRPAV 62 (194)
T ss_dssp HHHHHHCSEEEEECCTTSSTTHHHHHHHHHH-HHTTSCSEEEEEECSC
T ss_pred HHHHCCCCEEEEECCCCCCHHHHHHHHHHHH-HHCCCCCEEEEEECCC
T ss_conf 9985469848998899973999999999987-6314510156764464
No 292
>>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase; 2.10A {Mycobacterium tuberculosis} (A:1-50,A:103-207)
Probab=62.03 E-value=6.1 Score=18.73 Aligned_cols=37 Identities=19% Similarity=0.364 Sum_probs=23.9
Q ss_pred CCCCCCCEEEEECCCCC--EEEEEECCCCHHHHHHHHHH
Q ss_conf 45666666785410020--23553047740679999999
Q gi|254780799|r 439 GKSIEGKPIIADLARMP--HLLIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 439 GKdI~G~pvv~DLakMP--HLLIAGtTGSGKSV~iN~iI 475 (806)
|+.-.+.+++-|+.=-| -+-+=|-+|||||..+|.|-
T Consensus 3 ~~~~~~~~~l~~~~i~~g~~~~~~GpsG~GKsTll~~~~ 41 (155)
T 1znw_A 3 GEGPDTKPTARGQPAAVGRVVVLSGPSAVGKSTVVRCLR 41 (155)
T ss_dssp ----------------CCCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 889998998788988788089998989999999999999
No 293
>>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* (A:)
Probab=61.94 E-value=6.5 Score=18.48 Aligned_cols=51 Identities=22% Similarity=0.273 Sum_probs=34.4
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHCCH---H--HEEEEEECCCHHHHHHCCCC
Q ss_conf 023553047740679999999999982995---7--84788852310011102770
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTMILSLLYRMTP---A--QCRLIMIDPKMLELSVYDGI 505 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~iI~SlLyk~~P---~--evkliliDPK~vEls~Y~~i 505 (806)
-+++|.|..|+|||--+|.++..=.-...| . ..+.+..+.+.+.+..+.+.
T Consensus 22 ~ki~ivG~~~vGKTsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~ 77 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTA 77 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCEEEEEEECCC
T ss_conf 69999996992989999999709899874880111220145307834887630268
No 294
>>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; 2.60A {Bacillus subtilis} (A:1-254)
Probab=61.92 E-value=3.7 Score=20.33 Aligned_cols=16 Identities=31% Similarity=0.376 Sum_probs=12.3
Q ss_pred HHHCCCCCEEEECCCC
Q ss_conf 7865887547736898
Q gi|254780799|r 672 EQLLGQGDMLYMTGGG 687 (806)
Q Consensus 672 e~Llg~gdml~~~~~~ 687 (806)
+--|+.|||||+|+|-
T Consensus 219 ~~~l~pGD~LyiP~gw 234 (254)
T 1vrb_A 219 IVNLTPGTXLYLPRGL 234 (254)
T ss_dssp EEEECTTCEEEECTTC
T ss_pred EEEECCCCEEEECCCC
T ss_conf 9997798789978997
No 295
>>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, dimer; HET: ADP; 2.40A {Aquifex aeolicus} (A:140-312)
Probab=61.84 E-value=5.7 Score=18.95 Aligned_cols=38 Identities=21% Similarity=0.426 Sum_probs=29.5
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHCCHH-HEEEEEECCCHH
Q ss_conf 0235530477406799999999999829957-847888523100
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTMILSLLYRMTPA-QCRLIMIDPKML 497 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~-evkliliDPK~v 497 (806)
-|+||-|-+|+||+.. .-.++++++. +=.||.+|.-..
T Consensus 22 ~pVli~GE~GtGK~~~-----A~~ih~~s~~~~~~fi~~~c~~~ 60 (173)
T 1ny5_A 22 CPVLITGESGVGKEVV-----ARLIHKLSDRSKEPFVALNVASI 60 (173)
T ss_dssp SCEEEECSTTSSHHHH-----HHHHHHHSTTTTSCEEEEETTTS
T ss_pred CCEEEECCCCCCHHHH-----HHHHHHCCCCCCCCCEEEECCCC
T ss_conf 8289989898589999-----99999658867999678646889
No 296
>>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 3.20A {Nostoc SP} (A:214-390)
Probab=61.67 E-value=7 Score=18.27 Aligned_cols=28 Identities=25% Similarity=0.159 Sum_probs=23.5
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 0020235530477406799999999999
Q gi|254780799|r 452 ARMPHLLIAGTTGSGKSVAINTMILSLL 479 (806)
Q Consensus 452 akMPHLLIAGtTGSGKSV~iN~iI~SlL 479 (806)
.+-+++.+.|..|+|||--+|.+.-+=.
T Consensus 9 ~~~~~i~liG~~~vGKSsLin~l~~~~~ 36 (177)
T 3geh_A 9 RTGLKVAIVGRPNVGKSSLLNAWSQSDR 36 (177)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHB
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHCCCC
T ss_conf 3783699972556661257777626554
No 297
>>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} (A:1-91)
Probab=61.55 E-value=2.7 Score=21.33 Aligned_cols=58 Identities=19% Similarity=0.179 Sum_probs=45.0
Q ss_pred HHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCCCCCEEEECHHHH
Q ss_conf 9999996598500014222001177899999999977986802278872673171253
Q gi|254780799|r 746 AVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPASSTGKREILISSMEE 803 (806)
Q Consensus 746 a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~~g~~~r~vl~~~~~~ 803 (806)
....+...+-.|.+-|-+++.+-=+-..|+++.||++|+|......+.+-+-+++...
T Consensus 18 iL~~i~~~~~~t~~ela~~l~i~~~~vs~~i~~L~~~gli~r~~D~R~~~i~lT~~G~ 75 (91)
T 3cta_A 18 EAAEASNRAYLTSSKLADMLGISQQSASRIIIDLEKNGYITRTVTKRGQILNITEKGL 75 (91)
T ss_dssp HHTTTSSEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCEEEEEECHHHH
T ss_conf 8564047998389999999887887999999999988998997349833344898899
No 298
>>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} (A:)
Probab=61.54 E-value=6.3 Score=18.62 Aligned_cols=42 Identities=17% Similarity=0.308 Sum_probs=28.8
Q ss_pred EEEHHHHH-HHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCC
Q ss_conf 77634468-888732100588999999866414237999965777535
Q gi|254780799|r 593 VVVIDEMA-DLMMVARKDIESAVQRLAQMARASGIHVIMATQRPSVDV 639 (806)
Q Consensus 593 vviiDEla-Dlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPsvdv 639 (806)
|++.||=. +|.+ . ...+..|.+..+.-|+-+|+.|.+.++.-
T Consensus 102 iLiLDEPt~~lD~--~---~~~~~~l~~~~~~~g~tvi~vsHd~~~~~ 144 (178)
T 1ye8_A 102 VIIIDEIGKXELF--S---KKFRDLVRQIXHDPNVNVVATIPIRDVHP 144 (178)
T ss_dssp EEEECCCSTTGGG--C---HHHHHHHHHHHTCTTSEEEEECCSSCCSH
T ss_pred EEEEECCCCCCCH--H---HHHHHHHHHHHCCCCCEEEEEEECHHHHH
T ss_conf 8998347853221--3---68999876521157846999983267787
No 299
>>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA- binding protein, DNA binding protein; HET: SAP; 2.50A {Deinococcus radiodurans} (A:71-285)
Probab=61.44 E-value=8.3 Score=17.71 Aligned_cols=30 Identities=17% Similarity=0.297 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHHHHHHCCEEEEEEECCCC
Q ss_conf 100588999999866414237999965777
Q gi|254780799|r 607 RKDIESAVQRLAQMARASGIHVIMATQRPS 636 (806)
Q Consensus 607 ~~~ve~~i~rlaq~ara~GiHli~aTqrPs 636 (806)
.+..-..+.+|.+.|+..|++.++-.|...
T Consensus 113 ~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~ 142 (215)
T 1xp8_A 113 ARLMSQALRKLTAILSKTGTAAIFINQVRE 142 (215)
T ss_dssp HHHHHHHHHHHHHHHTTTCCEEEEEEEC--
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEEEEEC
T ss_conf 999999999998888653955999988732
No 300
>>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, replication initiation; HET: ADP; 2.70A {Aquifex aeolicus} (A:1-166)
Probab=61.29 E-value=5.9 Score=18.80 Aligned_cols=46 Identities=7% Similarity=0.090 Sum_probs=33.6
Q ss_pred CEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCC
Q ss_conf 86877634468888732100588999999866414237999965777
Q gi|254780799|r 590 PYIVVVIDEMADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPS 636 (806)
Q Consensus 590 p~ivviiDElaDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPs 636 (806)
.+-|++|||+-.+.+ .....+.....+...-...++-+|.+|.+|.
T Consensus 98 ~~~iL~iDE~d~~~~-~~~~~~~l~~~~~~~~~~~~~~ii~s~~~~~ 143 (166)
T 1l8q_A 98 SVDLLLLDDVQFLSG-KERTQIEFFHIFNTLYLLEKQIILASDRHPQ 143 (166)
T ss_dssp TCSEEEEECGGGGTT-CHHHHHHHHHHHHHHHHTTCEEEEEESSCGG
T ss_pred CCCEEECCCHHHHCC-CHHHHHHHHHHHHHHHHCCCCEEEECCCCHH
T ss_conf 256400030665415-5578999999999998709968985698856
No 301
>>2pa8_L DNA-directed RNA polymerase subunit L; ferredoxin-like Fe-S binding motif, platform for RNA polymerase assembly, transferase; 1.76A {Sulfolobus solfataricus P2} PDB: 2pmz_L 3hkz_L 2waq_L 2wb1_L (L:)
Probab=61.27 E-value=6.3 Score=18.61 Aligned_cols=45 Identities=11% Similarity=0.128 Sum_probs=36.3
Q ss_pred CCCHHHHHHCCCCHHHHCC-----CCCCHH-HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2310011102770343122-----334304-5668999999999999999987
Q gi|254780799|r 493 DPKMLELSVYDGIPNLLTP-----VVTNPQ-KAVTVLKWLVCEMEERYQKMSK 539 (806)
Q Consensus 493 DPK~vEls~Y~~iPHLl~p-----VvTd~~-kA~~aL~w~V~EMe~RY~l~a~ 539 (806)
||. |+++.|. |||=+.+ |-|+.. .+..||++|++.+...++.|.+
T Consensus 35 ~~~-V~fagY~-ipHPl~~~~~i~Iqt~~~~~p~~~l~~a~~~l~~~~~~l~~ 85 (92)
T 2pa8_L 35 ISG-VSFASYY-QPHPLSDKIIVKILTDGSITPKDALLKAIENIRGMTSHYID 85 (92)
T ss_dssp STT-EEEEEEE-CSSTTSCCEEEEEEECSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC-EEEEEEE-CCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 998-0698887-77788780599999689999899999999999999999999
No 302
>>2dpx_A GTP-binding protein RAD; GTPase, small-G, RGK, signal transduction, diabetes, signaling protein; HET: GDP; 1.80A {Homo sapiens} PDB: 2gjs_A* (A:)
Probab=61.19 E-value=6.9 Score=18.32 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=20.5
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHH
Q ss_conf 020235530477406799999999
Q gi|254780799|r 453 RMPHLLIAGTTGSGKSVAINTMIL 476 (806)
Q Consensus 453 kMPHLLIAGtTGSGKSV~iN~iI~ 476 (806)
+--+++|-|-.|+|||-.+|.+.-
T Consensus 6 ~~~ki~iiG~~~~GKTsli~~l~~ 29 (174)
T 2dpx_A 6 SVYKVLLLGAPGVGKSALARIFGG 29 (174)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHC
T ss_conf 566899999799398999999947
No 303
>>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} (A:)
Probab=61.01 E-value=3.8 Score=20.29 Aligned_cols=43 Identities=19% Similarity=0.128 Sum_probs=22.8
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHH
Q ss_conf 00202355304774067999999999998299578478885231001110
Q gi|254780799|r 452 ARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSV 501 (806)
Q Consensus 452 akMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~ 501 (806)
..|+=.+|.|..|||||--- ..|-+. -.+.++-.|+-..+...
T Consensus 2 nm~~~I~i~G~~GsGKsTia-----~~La~~--lg~~~~~~d~~~~~~~~ 44 (175)
T 1via_A 2 SLAKNIVFIGFXGSGKSTLA-----RALAKD--LDLVFLDSDFLIEQKFN 44 (175)
T ss_dssp ---CCEEEECCTTSCHHHHH-----HHHHHH--HTCEEEEHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHH-----HHHHHH--HCCCEEECCCHHHHHHH
T ss_conf 99984999858999899999-----999998--49986844320556776
No 304
>>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} (A:1-239)
Probab=61.00 E-value=7.6 Score=18.00 Aligned_cols=163 Identities=16% Similarity=0.233 Sum_probs=73.6
Q ss_pred HCCCCCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHH-------------HHHCCHH--HEEEEEECCCHH-HHH
Q ss_conf 104566666678541002023553047740679999999999-------------9829957--847888523100-111
Q gi|254780799|r 437 NLGKSIEGKPIIADLARMPHLLIAGTTGSGKSVAINTMILSL-------------LYRMTPA--QCRLIMIDPKML-ELS 500 (806)
Q Consensus 437 aLGKdI~G~pvv~DLakMPHLLIAGtTGSGKSV~iN~iI~Sl-------------Lyk~~P~--evkliliDPK~v-Els 500 (806)
..|.-..=+-+-.++.+==.+-+-|--|||||..+|.|---+ +-+.+|. .+-++.=++... .++
T Consensus 20 ~~g~~~al~~vsl~i~~Ge~~~liGpsGaGKSTll~~i~gl~~p~~G~v~~~g~~i~~~~~~~r~i~~v~Q~~~L~~~~t 99 (239)
T 1v43_A 20 RFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMT 99 (239)
T ss_dssp EETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCC
T ss_pred EECCEEEECCCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCCEEEECCCCCCCCCC
T ss_conf 99999999472789899989999999998599999999749988872999999999989988928347821310276443
Q ss_pred HCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---HHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 02770343122334304566899999999999999998708996---8999-9999988744786677544677654543
Q gi|254780799|r 501 VYDGIPNLLTPVVTNPQKAVTVLKWLVCEMEERYQKMSKIGVRN---IDGF-NLKVAQYHNTGKKFNRTVQTGFDRKTGE 576 (806)
Q Consensus 501 ~Y~~iPHLl~pVvTd~~kA~~aL~w~V~EMe~RY~l~a~~~vRn---i~~y-N~k~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (806)
+|+.|---+.--=..++++....+|+.+.+.- ....-|. +.|= -+|+.-|++
T Consensus 100 V~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l-----~~~~~~~p~~LSGG~kQRvaiAra------------------- 155 (239)
T 1v43_A 100 VYENIAFPLKIKKFPKDEIDKRVRWAAELLQI-----EELLNRYPAQLSGGQRQRVAVARA------------------- 155 (239)
T ss_dssp HHHHHHTTCC--CCCHHHHHHHHHHHHHHTTC-----GGGTTSCTTTCCSSCHHHHHHHHH-------------------
T ss_pred HHHHHHCHHHHCCCCHHHHHHHHHHHHHHCCC-----HHHHHCCHHHCCHHHHHHHHHHHH-------------------
T ss_conf 44432152644599999999999999987599-----337609934699999999999887-------------------
Q ss_pred CCCCCCCCCCCCCCEEEEEHHHH-HHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCC
Q ss_conf 22233223234698687763446-8888732100588999999866414237999965777
Q gi|254780799|r 577 AIYETEHFDFQHMPYIVVVIDEM-ADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPS 636 (806)
Q Consensus 577 ~~~~~~~~~~~~lp~ivviiDEl-aDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPs 636 (806)
+-.-|- |++-||= +-|=..+..++-..|.+|.+. -|+-.++.|.-..
T Consensus 156 ---------L~~~P~-illlDEPts~LD~~~~~~i~~~i~~l~~~---~~~tvl~vtHd~~ 203 (239)
T 1v43_A 156 ---------IVVEPD-VLLMDEPLSNLDAKLRVAMRAEIKKLQQK---LKVTTIYVTHDQV 203 (239)
T ss_dssp ---------HTTCCS-EEEEESTTTTSCHHHHHHHHHHHHHHHHH---HTCEEEEEESCHH
T ss_pred ---------HCCCCC-CEEECCCCCCCCHHHHHHHHHHHHHHHHH---CCCEEEEEECCHH
T ss_conf ---------523998-11305886433999999999999998987---0954999958999
No 305
>>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} (A:)
Probab=60.95 E-value=6.9 Score=18.30 Aligned_cols=54 Identities=19% Similarity=0.205 Sum_probs=33.8
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHCCHH------HEEEEEECCCHHHHHHCCCCHHH
Q ss_conf 0235530477406799999999999829957------84788852310011102770343
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTMILSLLYRMTPA------QCRLIMIDPKMLELSVYDGIPNL 508 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~------evkliliDPK~vEls~Y~~iPHL 508 (806)
..++|-|.+|+|||--+|.++..-.-...+. ..+.+.+|-..+.+..++...|.
T Consensus 21 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPEL 80 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCH
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCEEEEEEEEECCCCHHH
T ss_conf 799999968988899999997498998758854689999999999999999978983443
No 306
>>3db2_A Putative NADPH-dependent oxidoreductase; ZP_01370612.1, structural genomics, joint center for structural genomics, JCSG; 1.70A {Desulfitobacterium hafniense dcb-2} (A:1-127,A:299-354)
Probab=60.95 E-value=10 Score=17.10 Aligned_cols=43 Identities=23% Similarity=0.365 Sum_probs=34.0
Q ss_pred HHHHHHHHCCCHH---------HHHHHHHHHHHHHCCEEEEEEECCCCCCCC
Q ss_conf 4688887321005---------889999998664142379999657775355
Q gi|254780799|r 598 EMADLMMVARKDI---------ESAVQRLAQMARASGIHVIMATQRPSVDVI 640 (806)
Q Consensus 598 ElaDlmm~~~~~v---------e~~i~rlaq~ara~GiHli~aTqrPsvdvi 640 (806)
|+|-..|-+||.| .+-..+|.+.|+..|..+.++.|+.|||-.
T Consensus 81 e~a~~AL~~GkhVlvEKP~a~s~~e~~eL~~lA~~~gv~v~Vg~~~R~~~~~ 132 (183)
T 3db2_A 81 EVIEQCARSGKHIYVEKPISVSLDHAQRIDQVIKETGVKFLCGHSSRSVDHL 132 (183)
T ss_dssp HHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHCCCEEEECGGGCCCHH
T ss_pred HHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCEEEEEEEEECCCHH
T ss_conf 9999999879908860687698899999999999749867885454066299
No 307
>>1l2t_A Hypothetical ABC transporter ATP-binding protein MJ0796; ABC transporters, ATPase, walker-A, NBD, transport protein; HET: ATP; 1.90A {Methanocaldococcus jannaschii} (A:)
Probab=60.91 E-value=10 Score=17.10 Aligned_cols=41 Identities=24% Similarity=0.382 Sum_probs=27.1
Q ss_pred EEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEE
Q ss_conf 785410020235530477406799999999999829957847888
Q gi|254780799|r 447 IIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIM 491 (806)
Q Consensus 447 vv~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evklil 491 (806)
+-.++.+==.+-|-|.+|||||.-+|.|-- | .+|++=+..+
T Consensus 24 isl~i~~Ge~vaiiGpSGsGKSTLl~~i~g--l--~~p~~G~I~~ 64 (235)
T 1l2t_A 24 VNLNIKEGEFVSIMGPSGSGKSTMLNIIGC--L--DKPTEGEVYI 64 (235)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTT--S--SCCSEEEEEE
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHC--C--CCCCCEEEEE
T ss_conf 288987998999999999819999999965--9--9998638999
No 308
>>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PSI-2, protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58} (A:)
Probab=60.91 E-value=6.5 Score=18.49 Aligned_cols=74 Identities=18% Similarity=0.156 Sum_probs=40.7
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHH--HHHCCHHHE--EEEEECCCHHHHHHCCCCHHHHCCCCCCHHHHHHHHHH
Q ss_conf 002023553047740679999999999--982995784--78885231001110277034312233430456689999
Q gi|254780799|r 452 ARMPHLLIAGTTGSGKSVAINTMILSL--LYRMTPAQC--RLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKW 525 (806)
Q Consensus 452 akMPHLLIAGtTGSGKSV~iN~iI~Sl--Lyk~~P~ev--kliliDPK~vEls~Y~~iPHLl~pVvTd~~kA~~aL~w 525 (806)
++.||+|+-|--|+||+--.+++.-.+ |.++--.++ .++-|++-.+.=.....-...+..+.-..........|
T Consensus 3 ~~~~~iLl~GPPGtGKT~~a~a~a~~l~~l~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (199)
T 2r2a_A 3 AXAEICLITGTPGSGKTLKXVSXXANDEXFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDXYEW 80 (199)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 754289999999973999999999997767776456762489745355400013165789998788888887666666
No 309
>>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} (A:74-301)
Probab=60.68 E-value=6.6 Score=18.47 Aligned_cols=43 Identities=23% Similarity=0.229 Sum_probs=29.0
Q ss_pred HCCCCCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 1045666666785410020235530477406799999999999
Q gi|254780799|r 437 NLGKSIEGKPIIADLARMPHLLIAGTTGSGKSVAINTMILSLL 479 (806)
Q Consensus 437 aLGKdI~G~pvv~DLakMPHLLIAGtTGSGKSV~iN~iI~SlL 479 (806)
............-++-+-.+..|.|.++.|||-.||++.-.-.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~v~iiG~pNvGKSSLiN~L~~~~~ 121 (228)
T 1u0l_A 79 TSAKTGMGIEELKEYLKGKISTMAGLSGVGKSSLLNAINPGLK 121 (228)
T ss_dssp CCTTTCTTHHHHHHHHSSSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred EECCCCHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCCHHH
T ss_conf 6044402666699986798699987887348889752174354
No 310
>>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, ATP-binding; 2.15A {Ehrlichia chaffeensis} (A:)
Probab=60.61 E-value=8.4 Score=17.68 Aligned_cols=31 Identities=19% Similarity=0.194 Sum_probs=22.4
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCHHHE
Q ss_conf 3553047740679999999999982995784
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMILSLLYRMTPAQC 487 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~SlLyk~~P~ev 487 (806)
..|.|..|||||.-.+.+.-.+=.+.-+...
T Consensus 24 I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~ 54 (223)
T 3ld9_A 24 ITFEGIDGSGKTTQSHLLAEYLSEIYGVNNV 54 (223)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHHCGGGE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCEE
T ss_conf 9988998899999999999998863898549
No 311
>>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} (A:401-487)
Probab=60.56 E-value=7.6 Score=17.99 Aligned_cols=56 Identities=11% Similarity=0.194 Sum_probs=41.8
Q ss_pred HHHHHHHCC--CEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHC-CCCCEEEECHH
Q ss_conf 999999659--850001422200117789999999997798680227-88726731712
Q gi|254780799|r 746 AVDIVLRDN--KASISYIQRRLGIGYNRAASIIENMEEKGVIGPASS-TGKREILISSM 801 (806)
Q Consensus 746 a~~~v~~~~--~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~~g-~~~r~vl~~~~ 801 (806)
++.++...+ ..+.+-|.+++.+--+.+.|+++.||++|+|--... .-+|.+++.-.
T Consensus 9 iL~~l~~~~~~~~t~~~l~~~l~~~~~~vs~~i~~L~~~g~i~r~~~~~D~R~~~i~LT 67 (87)
T 1hsj_A 9 ILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVT 67 (87)
T ss_dssp HHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECC
T ss_pred HHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEC
T ss_conf 99999986157864999986416781120488988775121011135765107999962
No 312
>>3enu_A Nitrollin, putative uncharacterized protein; betagamma crystallin, structural protein; 1.86A {Nitrosospira multiformis} PDB: 3ent_A (A:)
Probab=60.40 E-value=3.1 Score=20.93 Aligned_cols=23 Identities=43% Similarity=0.853 Sum_probs=18.1
Q ss_pred CCCEEEECCCCCEEEEEECCCCH
Q ss_conf 87547736898325888334898
Q gi|254780799|r 677 QGDMLYMTGGGRVQRIHGPFVSD 699 (806)
Q Consensus 677 ~gdml~~~~~~~~~r~~g~~v~~ 699 (806)
+|||||+.+-...+|+-|+|--|
T Consensus 34 QGD~L~L~GPA~~~~l~~~~~~~ 56 (114)
T 3enu_A 34 QGDSLFLSGPATLPRLIGPFGYD 56 (114)
T ss_dssp CSCEEEEESSEEESSSEETTTEE
T ss_pred CCCEEEEECCHHHHHCCCCHHHH
T ss_conf 67468987746632202602456
No 313
>>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* (A:99-285)
Probab=60.32 E-value=10 Score=17.02 Aligned_cols=144 Identities=15% Similarity=0.167 Sum_probs=74.8
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 35530477406799999999999829957847888523100111027703431223343045668999999999999999
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEMEERYQK 536 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~iPHLl~pVvTd~~kA~~aL~w~V~EMe~RY~l 536 (806)
.++.|-+|+|||-..=- +..-+.+..-..|-++-.||-+- .-.++.+||..
T Consensus 10 i~l~G~~GvGKTT~a~~-LA~~~~~~~g~~v~li~~D~~~~----------------------------~~~~~l~~~~~ 60 (187)
T 2px0_A 10 IVLFGSTGAGKTTTLAK-LAAISMLEKHKKIAFITTDTYRI----------------------------AAVEQLKTYAE 60 (187)
T ss_dssp EEEEESTTSSHHHHHHH-HHHHHHHTTCCCEEEEECCCSST----------------------------THHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHH-HHHHHHHHCCCCCEEECCCCCCH----------------------------HHHHHHHHHHH
T ss_conf 99973666326669999-99999874223441203775647----------------------------79999999986
Q ss_pred HHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCC--HHHHHH
Q ss_conf 987089968999999998874478667754467765454322233223234698687763446888873210--058899
Q gi|254780799|r 537 MSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVARK--DIESAV 614 (806)
Q Consensus 537 ~a~~~vRni~~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ivviiDElaDlmm~~~~--~ve~~i 614 (806)
.....++-...=++........ -.|=+||||- +|+ .-....
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~d~ViIDt-------~g~~~~~~~~~ 103 (187)
T 2px0_A 61 LLQAPLEVCYTKEEFQQAKELF------------------------------SEYDHVFVDT-------AGRNFKDPQYI 103 (187)
T ss_dssp TTTCCCCBCSSHHHHHHHHHHG------------------------------GGSSEEEEEC-------CCCCTTSHHHH
T ss_pred HCCCCCHHHCCHHHHHHHHHHH------------------------------CCCEEEEEEC-------CCCCCHHHHHH
T ss_conf 5122312221446899999840------------------------------5432899833-------66210013478
Q ss_pred HHHHHHHHH---CCEEEEEEECCCCCCCCCHHHHHCCCCEEEEEECCCCCCHHHCC
Q ss_conf 999986641---42379999657775355435541102515876458664212338
Q gi|254780799|r 615 QRLAQMARA---SGIHVIMATQRPSVDVITGTIKANFPTRISFQVSSKIDSRTILG 667 (806)
Q Consensus 615 ~rlaq~ara---~GiHli~aTqrPsvdvitg~ikan~p~riaf~v~s~~dSrtild 667 (806)
.++++..++ .-.|+++++..- .+.+.-....|=+-+..+-|-+++|.++.++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~i~tk~d~~~~~g 158 (187)
T 2px0_A 104 DELKETIPFESSIQSFLVLSATAK-YEDMKHIVKRFSSVPVNQYIFTKIDETTSLG 158 (187)
T ss_dssp HHHHHHSCCCTTEEEEEEEETTBC-HHHHHHHTTTTSSSCCCEEEEECTTTCSCCH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHCCCCCCCEEEEEEECCCCCHH
T ss_conf 999987643221465422221012-5677776654012688789998224899556
No 314
>>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} (A:)
Probab=60.15 E-value=5.2 Score=19.22 Aligned_cols=50 Identities=20% Similarity=0.266 Sum_probs=35.8
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCC
Q ss_conf 23553047740679999999999982995784788852310011102770
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGI 505 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~i 505 (806)
++++..-|||||..|.---+++.+.+..+.--.+++.-+.-+=..+|+-.
T Consensus 53 dvi~~A~TGsGKT~a~~lpi~~~~~~~~~~~~~~i~~ptreLa~qi~~~~ 102 (220)
T 1t6n_A 53 DVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEY 102 (220)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHH
T ss_pred CEEEECCCCCCCHHHHCCCHHCCCCCCCCCCCEEEEECCHHHHHHHHHHH
T ss_conf 88987444554112213310001134576861899613046778899999
No 315
>>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} (I:1-170)
Probab=60.11 E-value=7.6 Score=18.00 Aligned_cols=48 Identities=15% Similarity=0.141 Sum_probs=30.7
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCC
Q ss_conf 020235530477406799999999999829957847888523100111027
Q gi|254780799|r 453 RMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYD 503 (806)
Q Consensus 453 kMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~ 503 (806)
+-|+.-|.|-+++|||--+|++...-.... ....+=+|-...+....+
T Consensus 3 ~~~~I~iiG~~n~GKSTL~~~l~~~~~~~~---~~~~~t~~~~~~~~~~~~ 50 (170)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASG---EAGGITQHIGAYHVETEN 50 (170)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBT---TBCCCCCCSSCCCCCTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCCCC---CCCCEEEECCEEEEEECC
T ss_conf 899999994899898799999974178531---279657972359999789
No 316
>>2rhm_A Putative kinase; ZP_00765535.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Chloroflexus aurantiacus j-10-fl} (A:)
Probab=60.01 E-value=6.7 Score=18.42 Aligned_cols=20 Identities=15% Similarity=0.458 Sum_probs=15.2
Q ss_pred EEEEEECCCCHHHHHHHHHH
Q ss_conf 23553047740679999999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI 475 (806)
=.+|.|..|||||--.+.+-
T Consensus 7 ~I~i~G~~GsGKsT~a~~L~ 26 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALA 26 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99998789999999999999
No 317
>>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} (A:)
Probab=59.92 E-value=10 Score=16.98 Aligned_cols=56 Identities=9% Similarity=0.167 Sum_probs=42.1
Q ss_pred HHHHHHHHCCC--EEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHH-HCCCCCEEEECH
Q ss_conf 99999996598--500014222001177899999999977986802-278872673171
Q gi|254780799|r 745 QAVDIVLRDNK--ASISYIQRRLGIGYNRAASIIENMEEKGVIGPA-SSTGKREILISS 800 (806)
Q Consensus 745 ~a~~~v~~~~~--~s~s~lqr~~~igy~raar~~~~~e~~giv~~~-~g~~~r~vl~~~ 800 (806)
..+.++..... .+.+-|-+++.+--+-..|+++.||++|+|--. +..-.|.+.+.-
T Consensus 41 ~iL~~l~~~~~~~~t~~ela~~l~i~~~~vs~~v~~L~~~g~v~r~~~~~D~R~~~i~L 99 (127)
T 2frh_A 41 AVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILV 99 (127)
T ss_dssp HHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEEC
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCHHEEEECCCCCCCCCEEE
T ss_conf 99999984689991899999997989868999999997020313442124676410006
No 318
>>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} (A:94-285)
Probab=59.89 E-value=10 Score=16.97 Aligned_cols=74 Identities=14% Similarity=0.180 Sum_probs=45.0
Q ss_pred ECCCCCEE-EEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHH----HHCCCCHHHHCCCCCCHHHHHHHHH
Q ss_conf 41002023-553047740679999999999982995784788852310011----1027703431223343045668999
Q gi|254780799|r 450 DLARMPHL-LIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLEL----SVYDGIPNLLTPVVTNPQKAVTVLK 524 (806)
Q Consensus 450 DLakMPHL-LIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEl----s~Y~~iPHLl~pVvTd~~kA~~aL~ 524 (806)
|+.+=+.. -+=|.+|||||.-++.| +=+++.+--.+.+.-.|..+.+. ..+..+++.-...+........+.+
T Consensus 2 d~k~~Gei~~liGpsGsGKSTll~~l--~g~~~p~~G~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 79 (192)
T 3dm5_A 2 EIKEKPTILLMVGIQGSGKTTTVAKL--ARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAK 79 (192)
T ss_dssp CCCSSSEEEEEECCTTSSHHHHHHHH--HHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHH
T ss_pred CCCCCCCEEEECCCCCCCCHHHHHHH--HHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEECCCCCHHHHHHHH
T ss_conf 01356514652246666640688999--9999963982689973000001667889885036775104662025788999
Q ss_pred H
Q ss_conf 9
Q gi|254780799|r 525 W 525 (806)
Q Consensus 525 w 525 (806)
+
T Consensus 80 ~ 80 (192)
T 3dm5_A 80 E 80 (192)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 319
>>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} (B:)
Probab=59.88 E-value=7.5 Score=18.02 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=20.5
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 0202355304774067999999999
Q gi|254780799|r 453 RMPHLLIAGTTGSGKSVAINTMILS 477 (806)
Q Consensus 453 kMPHLLIAGtTGSGKSV~iN~iI~S 477 (806)
+-+.++|.|..|+|||-.+|.+.-.
T Consensus 6 ~~~ki~ivG~~~vGKSsLi~~l~~~ 30 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 8997999999998989999999719
No 320
>>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} (A:)
Probab=59.85 E-value=7.5 Score=18.02 Aligned_cols=54 Identities=19% Similarity=0.294 Sum_probs=35.5
Q ss_pred ECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHH------HEEEEEECCCHHHHHHCC
Q ss_conf 410020235530477406799999999999829957------847888523100111027
Q gi|254780799|r 450 DLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPA------QCRLIMIDPKMLELSVYD 503 (806)
Q Consensus 450 DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~------evkliliDPK~vEls~Y~ 503 (806)
+-.+-.+++|-|..|+|||-.+|.++..=.-...+. ..+.+.+|.+.+.+.+++
T Consensus 24 ~~~~~~ki~i~G~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d 83 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWD 83 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEE
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEECC
T ss_conf 767664999999999799999999952977876443355325666651499088766246
No 321
>>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} (A:37-273)
Probab=59.55 E-value=10 Score=17.00 Aligned_cols=132 Identities=14% Similarity=0.058 Sum_probs=61.2
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 35530477406799999999999829957847888523100111027703431223343045668999999999999999
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEMEERYQK 536 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~iPHLl~pVvTd~~kA~~aL~w~V~EMe~RY~l 536 (806)
-||+|..|||||..--.++...+-.-. +=+.||-. +=..+. ..+.|..+|..
T Consensus 30 ~li~G~pGsGKT~l~~q~~~~~~~~g~----~~lyi~te-----------~~~~~~-------------~~~~~~~~~~~ 81 (237)
T 1u94_A 30 VEIYGPESSGKTTLTLQVIAAAQREGK----TCAFIDAE-----------HALDPI-------------YARKLGVDIDN 81 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTC----CEEEEESS-----------CCCCHH-------------HHHHTTCCGGG
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCC----EEEEEECC-----------CCCCHH-------------HHHHCCCCHHH
T ss_conf 999888767789999999999855798----69998130-----------345988-------------99981987899
Q ss_pred HHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHC--CCHHHHHH
Q ss_conf 9870899689999999988744786677544677654543222332232346986877634468888732--10058899
Q gi|254780799|r 537 MSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVA--RKDIESAV 614 (806)
Q Consensus 537 ~a~~~vRni~~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ivviiDElaDlmm~~--~~~ve~~i 614 (806)
.......++.-+-....+......+.. .......--+-++|||-+..+-... .+..-..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~vid~~~~~~~~~~~~~~~~~~~ 143 (237)
T 1u94_A 82 LLCSQPDTGEQALEICDALARSGAVDV------------------IVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAM 143 (237)
T ss_dssp CEEECCSSHHHHHHHHHHHHHHTCCSE------------------EEEECGGGCCCHHHHTTC------CHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHHHHHCCCCCE------------------EEEECCCCCCCHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 389678879999999999974799878------------------99967566688888752106441659999999999
Q ss_pred HHHHHHHHHCCEEEEEEECC
Q ss_conf 99998664142379999657
Q gi|254780799|r 615 QRLAQMARASGIHVIMATQR 634 (806)
Q Consensus 615 ~rlaq~ara~GiHli~aTqr 634 (806)
.+|...+.-.++..++..|.
T Consensus 144 ~~L~~~~~~~~~~~~~~~~~ 163 (237)
T 1u94_A 144 RKLAGNLKQSNTLLIFINQI 163 (237)
T ss_dssp HHHHHHHHHHTCEEEEEEC-
T ss_pred HHHHHHHCCCCCEEEEEEEE
T ss_conf 99888751268379996223
No 322
>>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* (A:1405-1641)
Probab=59.55 E-value=10 Score=17.00 Aligned_cols=132 Identities=14% Similarity=0.058 Sum_probs=62.4
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 35530477406799999999999829957847888523100111027703431223343045668999999999999999
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEMEERYQK 536 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~iPHLl~pVvTd~~kA~~aL~w~V~EMe~RY~l 536 (806)
-||+|..|||||..--.++...+-.-. +=+.||-. +=..+. ..+.|..+|..
T Consensus 30 ~li~G~pGsGKT~l~~q~~~~~~~~g~----~~lyi~te-----------~~~~~~-------------~~~~~~~~~~~ 81 (237)
T 3cmw_A 30 VEIYGPESSGKTTLTLQVIAAAQREGK----TCAFIDAE-----------HALDPI-------------YARKLGVDIDN 81 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTC----CEEEECTT-----------SCCCHH-------------HHHHTTCCGGG
T ss_pred EEEECCCCCCCEEEEHHHHHHHCCCCC----HHHHCCCC-----------CCCCHH-------------HHHHHCCCCCC
T ss_conf 233147887737775876544404452----45433600-----------042277-------------78763446441
Q ss_pred HHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHC--CCHHHHHH
Q ss_conf 9870899689999999988744786677544677654543222332232346986877634468888732--10058899
Q gi|254780799|r 537 MSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVA--RKDIESAV 614 (806)
Q Consensus 537 ~a~~~vRni~~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ivviiDElaDlmm~~--~~~ve~~i 614 (806)
.......++.-+-....+......+.. .......--+-++|||-+..+-... .+..-..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~vid~~~~~~~~~~~~~~~~~~~ 143 (237)
T 3cmw_A 82 LLCSQPDTGEQALEICDALARSGAVDV------------------IVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAM 143 (237)
T ss_dssp CEEECCSSHHHHHHHHHHHHHHTCCSE------------------EEESCSTTCCCTTTTC-------CCHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHCCCCHHHC------------------CCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 698543158999998765647511220------------------26513430056631047657514444678887764
Q ss_pred HHHHHHHHHCCEEEEEEECC
Q ss_conf 99998664142379999657
Q gi|254780799|r 615 QRLAQMARASGIHVIMATQR 634 (806)
Q Consensus 615 ~rlaq~ara~GiHli~aTqr 634 (806)
.+|...+.-.++..++..|.
T Consensus 144 ~~L~~~~~~~~~~~~~~~~~ 163 (237)
T 3cmw_A 144 RKLAGNLKQSNTLLIFINQI 163 (237)
T ss_dssp HHHHHHHHHHTCEEEEEECB
T ss_pred HCCCCCCCCCCCEEEEECHH
T ss_conf 03676522233168970321
No 323
>>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} (A:1405-1637)
Probab=59.54 E-value=9 Score=17.46 Aligned_cols=45 Identities=16% Similarity=0.079 Sum_probs=24.1
Q ss_pred EEEEEHHHHHHHHHHCC--CHHHHHHHHHHHHHHHCCEEEEEEECCC
Q ss_conf 68776344688887321--0058899999986641423799996577
Q gi|254780799|r 591 YIVVVIDEMADLMMVAR--KDIESAVQRLAQMARASGIHVIMATQRP 635 (806)
Q Consensus 591 ~ivviiDElaDlmm~~~--~~ve~~i~rlaq~ara~GiHli~aTqrP 635 (806)
...+++|.++.+...+. +..-..+..|.-+|+..++..++-+|.-
T Consensus 114 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 160 (233)
T 3cmu_A 114 TPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR 160 (233)
T ss_dssp CCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECEE
T ss_pred CCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHH
T ss_conf 76766346546425889999999999999866641584798476556
No 324
>>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} (A:1-241)
Probab=59.27 E-value=8.9 Score=17.48 Aligned_cols=169 Identities=19% Similarity=0.281 Sum_probs=79.2
Q ss_pred CCCCCCEEEE----ECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHH-----HHHHCC-CCHHH-
Q ss_conf 5666666785----410020235530477406799999999999829957847888523100-----111027-70343-
Q gi|254780799|r 440 KSIEGKPIIA----DLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKML-----ELSVYD-GIPNL- 508 (806)
Q Consensus 440 KdI~G~pvv~----DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~v-----Els~Y~-~iPHL- 508 (806)
|.-.+.+++- ++.+==-+-+.|-.|||||..+++| ....+-+-=-|.+|=|-| .+..++ .|-++
T Consensus 12 ~~y~~~~vl~~isl~i~~Ge~~~liG~sGaGKSTll~~i-----~Gl~~p~sG~I~i~G~~v~~~~~~~~~~~r~ig~v~ 86 (241)
T 3fvq_A 12 KSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCL-----AGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLV 86 (241)
T ss_dssp EEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHH-----HTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEEC
T ss_pred EEECCEEEECCCEEEECCCCEEEEECCCCCHHHHHHHHH-----HCCCCCCCEEEEECCEECCCCCCCHHHHHCCCEEEE
T ss_conf 999999998062769899989999999998499999999-----739988962999999999887422037745957990
Q ss_pred ----HCCCCCCHHHHHHHHH----HHHHHHHHHHHHHHHCCCC--------CHHHHHH-HHHHHHHCCCCCCCCCCCCCC
Q ss_conf ----1223343045668999----9999999999999870899--------6899999-999887447866775446776
Q gi|254780799|r 509 ----LTPVVTNPQKAVTVLK----WLVCEMEERYQKMSKIGVR--------NIDGFNL-KVAQYHNTGKKFNRTVQTGFD 571 (806)
Q Consensus 509 ----l~pVvTd~~kA~~aL~----w~V~EMe~RY~l~a~~~vR--------ni~~yN~-k~~~~~~~~~~~~~~~~~~~~ 571 (806)
+-|-.|=-...+.+|. +.-.+-+|--+++...|.. .+.|=|+ |+.-|+.--
T Consensus 87 Q~~~l~~~ltv~env~~~l~~~~~~~~~~~~rv~~~l~~~gl~~~~~~~p~~LSGG~kQRv~iAraL~------------ 154 (241)
T 3fvq_A 87 QEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALA------------ 154 (241)
T ss_dssp TTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHT------------
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHCC------------
T ss_conf 37424632134555666655202315889999999987438564654782327988987887631104------------
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCCHHH--HHHHH-HHHHHHHCCEEEEEEECCCCCCCCCHHHHHCC
Q ss_conf 5454322233223234698687763446888873210058--89999-99866414237999965777535543554110
Q gi|254780799|r 572 RKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVARKDIE--SAVQR-LAQMARASGIHVIMATQRPSVDVITGTIKANF 648 (806)
Q Consensus 572 ~~~~~~~~~~~~~~~~~lp~ivviiDElaDlmm~~~~~ve--~~i~r-laq~ara~GiHli~aTqrPsvdvitg~ikan~ 648 (806)
.=|- +++-||=. ++=|+. ..|.. |-+..+.-|+-.|+.|..+.. =+++
T Consensus 155 ----------------~~P~-iLllDEPt-----~gLD~~~~~~i~~~l~~~~~~~g~tii~vtHdl~e-------~~~~ 205 (241)
T 3fvq_A 155 ----------------PDPE-LILLDEPF-----SALDEQLRRQIREDMIAALRANGKSAVFVSHDREE-------ALQY 205 (241)
T ss_dssp ----------------TCCS-EEEEESTT-----TTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHH-------HHHH
T ss_pred ----------------CCCC-EEEECCCC-----CCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHH-------HHHH
T ss_conf ----------------6887-68976875-----55899999999999999999629999998788999-------9986
Q ss_pred CCEEEE
Q ss_conf 251587
Q gi|254780799|r 649 PTRISF 654 (806)
Q Consensus 649 p~riaf 654 (806)
-.||.+
T Consensus 206 adri~v 211 (241)
T 3fvq_A 206 ADRIAV 211 (241)
T ss_dssp CSEEEE
T ss_pred CCEEEE
T ss_conf 999999
No 325
>>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} (A:)
Probab=59.19 E-value=4.2 Score=19.94 Aligned_cols=55 Identities=27% Similarity=0.239 Sum_probs=25.7
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCCHHHHCCCCCCHHHHH
Q ss_conf 3553047740679999999999982995784788852310011102770343122334304566
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAV 520 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~iPHLl~pVvTd~~kA~ 520 (806)
+.|+|..|||||--.+ .|. +.+...-++--.+--..+...-+++....-+.....
T Consensus 23 I~i~G~~GsGKsT~a~-----~L~----~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (230)
T 2vp4_A 23 VLIEGNIGSGKTTYLN-----HFE----KYKNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWA 77 (230)
T ss_dssp EEEECSTTSCHHHHHH-----TTG----GGTTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHH
T ss_pred EEEECCCCCCHHHHHH-----HHH----HHCCCCEEEECCCCCCCCCCCHHHHHHHHCCCCCCC
T ss_conf 9988899878899999-----999----865896599655873032320477762310232211
No 326
>>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii OT3} (A:)
Probab=59.12 E-value=8.3 Score=17.71 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=18.2
Q ss_pred EEEEEECCCCHHHHHHHHHHH
Q ss_conf 235530477406799999999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMIL 476 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~ 476 (806)
.+.+.|..++|||.-+|+++-
T Consensus 3 ~v~iiG~~naGKSSL~n~L~~ 23 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 899989999889999999958
No 327
>>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* (A:)
Probab=59.05 E-value=7.8 Score=17.92 Aligned_cols=22 Identities=18% Similarity=0.448 Sum_probs=18.2
Q ss_pred CEEEEEECCCCHHHHHHHHHHH
Q ss_conf 0235530477406799999999
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTMIL 476 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~iI~ 476 (806)
..++|-|.+|+|||-.+|.++.
T Consensus 22 ~ki~iiG~~~~GKSsLi~r~~~ 43 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHC
T ss_conf 7999999899598999999955
No 328
>>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* (A:1019-1284)
Probab=58.81 E-value=7.8 Score=17.89 Aligned_cols=211 Identities=18% Similarity=0.309 Sum_probs=102.8
Q ss_pred CCCCCCEEEEHHHCCCHHHHHCCCCCHHHCCCCCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCC-HHH-
Q ss_conf 245662387342307213430221000210456666667854100202355304774067999999999998299-578-
Q gi|254780799|r 409 PNDIRETVMLRDLIVSRVFEKNQCDLAINLGKSIEGKPIIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMT-PAQ- 486 (806)
Q Consensus 409 PN~~r~~V~lreil~s~~f~~s~~~L~iaLGKdI~G~pvv~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~-P~e- 486 (806)
||..+-.|.|+++-=+ |.... ..| .=+||+ .++.+==.+-|.|.+|||||--++.| .+.. |.+
T Consensus 6 p~~~~g~i~~~~v~f~--Y~~~~-~~~--vL~~is-----l~i~~Ge~v~ivG~sGsGKSTLl~ll-----~gl~~~~~G 70 (266)
T 3g5u_A 6 PNMLEGNVQFSGVVFN--YPTRP-SIP--VLQGLS-----LEVKKGQTLALVGSSGCGKSTVVQLL-----ERFYDPMAG 70 (266)
T ss_dssp TTTTSCCEEEEEEEBC--CSCGG-GCC--SBSSCC-----EEECSSSEEEEECSSSTTHHHHHHHH-----TTSSCCSEE
T ss_pred CCCCCCEEEEEEEEEE--CCCCC-CCC--EECCEE-----EEECCCCEEEEECCCCCCHHHHHHHH-----HCCCCCCCC
T ss_conf 8888872999889998--79999-984--001506-----99879899999899998499999999-----568608985
Q ss_pred --------------------EEEEEECCCHHHHHHCCCCHHHHC-CCCCCHHHHHHHHH-----HHHHHHHHHHHHHHHC
Q ss_conf --------------------478885231001110277034312-23343045668999-----9999999999999870
Q gi|254780799|r 487 --------------------CRLIMIDPKMLELSVYDGIPNLLT-PVVTNPQKAVTVLK-----WLVCEMEERYQKMSKI 540 (806)
Q Consensus 487 --------------------vkliliDPK~vEls~Y~~iPHLl~-pVvTd~~kA~~aL~-----w~V~EMe~RY~l~a~~ 540 (806)
+-++-=||.....++++.|..-.. +.+++ .+...+++ -.+..+..+|+-.-..
T Consensus 71 ~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Ti~eNl~~g~~~~~~~~-~~i~~~~~~~~~~~~i~~l~~g~~t~i~~ 149 (266)
T 3g5u_A 71 SVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSY-EEIVRAAKEANIHQFIDSLPDKYNTRVGD 149 (266)
T ss_dssp EEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCH-HHHHHHHHHHTCHHHHSSTTTGGGCBCST
T ss_pred EEEECCEEHHHCCHHHHHHHEEEECCCCEEECCCHHHHHHCCCCCCCCCH-HHHHHHHHHHCCHHHHHHCCCCCCCEECC
T ss_conf 89999998664999999744899868996128679999727799889999-99999999829879997177889988538
Q ss_pred CCCCHHHHH-HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHH-HHHHHHCCCHHHHHHHHHH
Q ss_conf 899689999-99998874478667754467765454322233223234698687763446-8888732100588999999
Q gi|254780799|r 541 GVRNIDGFN-LKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEM-ADLMMVARKDIESAVQRLA 618 (806)
Q Consensus 541 ~vRni~~yN-~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ivviiDEl-aDlmm~~~~~ve~~i~rla 618 (806)
+-+++.+=+ +|+.-|++- -+=|- |++.||- +-| ..+.|..|..+-
T Consensus 150 ~g~~LSgGq~QrialARal----------------------------~~~p~-illlDEpts~L----D~~~~~~i~~~l 196 (266)
T 3g5u_A 150 KGTQLSGGQKQRIAIARAL----------------------------VRQPH-ILLLDEATSAL----DTESEKVVQEAL 196 (266)
T ss_dssp TSCSSCHHHHHHHHHHHHH----------------------------HHCCS-SEEEESCSSSC----CHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH----------------------------HCCCC-EEEEECCCCCC----CHHHHHHHHHHH
T ss_conf 8934599999999999999----------------------------60899-89995833367----999999999999
Q ss_pred HHHHHCCEEEEEEECCCCCCCCCHHHHHCCCCEEEEEECCCCCCHHHCCCCCHHHHCCCCCEEE
Q ss_conf 8664142379999657775355435541102515876458664212338864578658875477
Q gi|254780799|r 619 QMARASGIHVIMATQRPSVDVITGTIKANFPTRISFQVSSKIDSRTILGEQGAEQLLGQGDMLY 682 (806)
Q Consensus 619 q~ara~GiHli~aTqrPsvdvitg~ikan~p~riaf~v~s~~dSrtild~~gae~Llg~gdml~ 682 (806)
+.+| -|.-.|+.|+|++. .-.--||.+= |.=.|..+.-.|+|+.+....|
T Consensus 197 ~~~~-~g~Tvi~vtH~l~~--------~~~~Driivl-----~~G~I~~~G~~~~L~~~~~~~~ 246 (266)
T 3g5u_A 197 DKAR-EGRTCIVIAHRLST--------IQNADLIVVI-----QNGKVKEHGTHQQLLAQKGIYF 246 (266)
T ss_dssp HHHS-SSSCEEEECSCTTG--------GGSCSEEEEE-----ETBEEEEEECHHHHHHSCSHHH
T ss_pred HHHC-CCCEEEEECCCHHH--------HHHCCEEEEE-----ECCEEEEECCHHHHHHCCHHHH
T ss_conf 9875-99999997178999--------9969999999-----8999999898899985987999
No 329
>>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} (A:)
Probab=58.75 E-value=7.6 Score=17.99 Aligned_cols=30 Identities=13% Similarity=0.221 Sum_probs=22.6
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHC
Q ss_conf 020235530477406799999999999829
Q gi|254780799|r 453 RMPHLLIAGTTGSGKSVAINTMILSLLYRM 482 (806)
Q Consensus 453 kMPHLLIAGtTGSGKSV~iN~iI~SlLyk~ 482 (806)
||+=+.|.|..|||||--.+.+--.|=.+.
T Consensus 2 ~~~iI~i~G~~GsGKtTla~~L~~~l~~~~ 31 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLRKEG 31 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 998899989999698999999999998759
No 330
>>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} (A:1-72)
Probab=58.70 E-value=11 Score=16.83 Aligned_cols=60 Identities=23% Similarity=0.335 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHHHCCC-EEEEHHHHHHCCC-HHHHHHHHHHHHHCCCCCHHHCCCCCEEEECH
Q ss_conf 7038999999996598-5000142220011-77899999999977986802278872673171
Q gi|254780799|r 740 DDLYKQAVDIVLRDNK-ASISYIQRRLGIG-YNRAASIIENMEEKGVIGPASSTGKREILISS 800 (806)
Q Consensus 740 d~l~~~a~~~v~~~~~-~s~s~lqr~~~ig-y~raar~~~~~e~~giv~~~~g~~~r~vl~~~ 800 (806)
.+.|+-.+++..++|. .|..-|++.|.+. -+..-+.+..||+.|.+--..| ++|-+-+.+
T Consensus 9 ~~iL~~I~~~~~~~g~pps~rei~~~~g~~S~stV~~~l~~Le~~G~i~r~~~-~ar~i~l~~ 70 (72)
T 1jhf_A 9 QEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKALARKGVIEIVSG-ASRGIRLLQ 70 (72)
T ss_dssp HHHHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHHHHHHTTSEEECSS-SSSCEEECC
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCC-CCCCCEECC
T ss_conf 99999999999982989769999998299973789998751342285110147-754310035
No 331
>>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} (A:)
Probab=58.64 E-value=8.1 Score=17.79 Aligned_cols=48 Identities=25% Similarity=0.387 Sum_probs=34.0
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHH------HEEEEEECCCHHHHHHCC
Q ss_conf 235530477406799999999999829957------847888523100111027
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPA------QCRLIMIDPKMLELSVYD 503 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~------evkliliDPK~vEls~Y~ 503 (806)
+++|-|..|+|||-.||.++..-.....+. ..+...++.+.+.+.+++
T Consensus 17 ki~iiG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 70 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWD 70 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCEEEEEEEEEEEEEEEEECCCCEEEEEE
T ss_conf 899999899178999999970988853211121001578999941000899986
No 332
>>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.40A {Homo sapiens} (A:)
Probab=58.59 E-value=8.1 Score=17.78 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=20.4
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 202355304774067999999999
Q gi|254780799|r 454 MPHLLIAGTTGSGKSVAINTMILS 477 (806)
Q Consensus 454 MPHLLIAGtTGSGKSV~iN~iI~S 477 (806)
.-.++|.|..|+|||-.+|.++..
T Consensus 37 ~~kI~iiG~~~vGKTsli~~~~~~ 60 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCCCHHHHHHHHHHC
T ss_conf 589999995995989999999738
No 333
>>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} (A:1-237)
Probab=58.58 E-value=11 Score=16.82 Aligned_cols=155 Identities=17% Similarity=0.240 Sum_probs=79.4
Q ss_pred CEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHH-HHHHCC-CC---H--HHHCCCCCCHH
Q ss_conf 66785410020235530477406799999999999829957847888523100-111027-70---3--43122334304
Q gi|254780799|r 445 KPIIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKML-ELSVYD-GI---P--NLLTPVVTNPQ 517 (806)
Q Consensus 445 ~pvv~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~v-Els~Y~-~i---P--HLl~pVvTd~~ 517 (806)
+-+-.++.+==.+-|.|-.|||||..+|+|-- | .+|++=+ |++|=|.+ .++... +| + +-|-|--|=-.
T Consensus 32 ~~isl~v~~Ge~~~iiG~sGsGKSTll~~i~G--l--~~p~~G~-I~i~G~~i~~~~~~~r~ig~vfQ~~~l~~~lTV~e 106 (237)
T 1z47_A 32 RGVSFQIREGEMVGLLGPSGSGKTTILRLIAG--L--ERPTKGD-VWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYD 106 (237)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHHT--S--SCCSEEE-EEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHH
T ss_pred ECCEEEECCCCEEEEECCCCCHHHHHHHHHHC--C--CCCCCEE-EEECCEECCCCCHHHCCEEEECCCCHHCCCHHHHH
T ss_conf 06476999998999999998649999999974--9--9989629-99999999999988888579874633221302335
Q ss_pred HHHHHHHH---HHHHHHHHH-HHHHHCCCCCH--------HH-HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 56689999---999999999-99987089968--------99-9999998874478667754467765454322233223
Q gi|254780799|r 518 KAVTVLKW---LVCEMEERY-QKMSKIGVRNI--------DG-FNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHF 584 (806)
Q Consensus 518 kA~~aL~w---~V~EMe~RY-~l~a~~~vRni--------~~-yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (806)
..+.+|+. .-+||++|- +++...+..+. .| --+|+.-|+.-
T Consensus 107 ni~~~l~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~p~~LSGG~kQRv~iAral-------------------------- 160 (237)
T 1z47_A 107 NVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARAL-------------------------- 160 (237)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHH--------------------------
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCCCCCHHHHHHHHHHHHH--------------------------
T ss_conf 455230013679899999999999750514565328655668899999998765--------------------------
Q ss_pred CCCCCCEEEEEHHH-HHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCC
Q ss_conf 23469868776344-68888732100588999999866414237999965777
Q gi|254780799|r 585 DFQHMPYIVVVIDE-MADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPS 636 (806)
Q Consensus 585 ~~~~lp~ivviiDE-laDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPs 636 (806)
-.=|-| ++.|| ++-|=....+++...|.+|.+ --|+-.|+.|+-+.
T Consensus 161 --~~~P~i-lllDEPts~LD~~~~~~i~~~i~~l~~---~~g~tii~itHd~~ 207 (237)
T 1z47_A 161 --APRPQV-LLFDEPFAAIDTQIRRELRTFVRQVHD---EMGVTSVFVTHDQE 207 (237)
T ss_dssp --TTCCSE-EEEESTTCCSSHHHHHHHHHHHHHHHH---HHTCEEEEECSCHH
T ss_pred --CCCCCE-EEECCCCCCCCHHHHHHHHHHHHHHHH---HCCCEEEEECCCHH
T ss_conf --235663-676487654899999999999999998---41999999888899
No 334
>>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleotide binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} (A:)
Probab=58.58 E-value=7.8 Score=17.92 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=16.0
Q ss_pred CC--EEEEEECCCCHHHHHHHHHH
Q ss_conf 20--23553047740679999999
Q gi|254780799|r 454 MP--HLLIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 454 MP--HLLIAGtTGSGKSV~iN~iI 475 (806)
|+ -++|-|.+|||||---+.+-
T Consensus 1 M~~~~I~i~G~~GsGKtTla~~La 24 (178)
T 1qhx_A 1 MTTRMIILNGGSSAGKSGIVRCLQ 24 (178)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 997399998999999899999999
No 335
>>2yu1_A JMJC domain-containing histone demethylation protein 1A; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A (A:51-323)
Probab=58.53 E-value=11 Score=16.86 Aligned_cols=99 Identities=11% Similarity=0.008 Sum_probs=59.6
Q ss_pred HHHHHHHHHCCEEEEEEECCCCC----CC-CCHHHHHCCCCEEEEEECCCCC---------------CHH---HCCCCCH
Q ss_conf 99998664142379999657775----35-5435541102515876458664---------------212---3388645
Q gi|254780799|r 615 QRLAQMARASGIHVIMATQRPSV----DV-ITGTIKANFPTRISFQVSSKID---------------SRT---ILGEQGA 671 (806)
Q Consensus 615 ~rlaq~ara~GiHli~aTqrPsv----dv-itg~ikan~p~riaf~v~s~~d---------------Srt---ild~~ga 671 (806)
.......+.....|-+..+.-.+ |. -+..+=+.+-.+--|.+-.--+ ... ..+...-
T Consensus 137 ~~~~~~~~~~~~~l~ig~~~s~t~~h~d~d~~~~~~~qi~G~K~w~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (273)
T 2yu1_A 137 AILEMQYPKVQKYCLMSVRGCYTDFHVDFGGTSVWYHIHQGGKVFWLIPPTAHNLELYENWLLSGSQGDIFLGDRVSDCQ 216 (273)
T ss_dssp ----CCSCCCCCEEEEECTTCEEEEECCGGGCEEEEEEEESCEEEEEECCCHHHHHHHHHHHHTTCCSSSCHHHHSSCCE
T ss_pred CCCCCCCCCCEEEEEEECCCCCCCEEECCCCCEEEEEEEECEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCCCEE
T ss_conf 22355788635899980699998743888875101223201089999799865712133445775227665001035428
Q ss_pred HHHCCCCCEEEECCCC-C-------EEEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 7865887547736898-3-------2588833489889999999997128
Q gi|254780799|r 672 EQLLGQGDMLYMTGGG-R-------VQRIHGPFVSDIEVEKVVSHLKTQG 713 (806)
Q Consensus 672 e~Llg~gdml~~~~~~-~-------~~r~~g~~v~~~ev~~v~~~~~~q~ 713 (806)
|--|+-||+||+|+|- . -+=+-.-|.+...+....++.+.+.
T Consensus 217 ~~~l~pGD~lyiP~gw~H~v~~~~~sisv~~~f~~~~~~~~~~~~~~~~~ 266 (273)
T 2yu1_A 217 RIELKQGYTFVIPSGWIHAVYTPTDTLVFGGNFLHSFNIPMQLKIYNIED 266 (273)
T ss_dssp EEEECTTCEEEECTTCEEEEECSSCEEEEEEEECCSSSHHHHHHHHHHHH
T ss_pred EEEECCCCEEEECCCCEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 99987997798369963898645456998057378320488999999998
No 336
>>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural genomics, NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii str} (A:)
Probab=58.49 E-value=7.6 Score=18.00 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=16.6
Q ss_pred CEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 02355304774067999999999
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTMILS 477 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~iI~S 477 (806)
....|.|..|||||.-.+.+.--
T Consensus 5 ~~I~i~G~~GsGKtTla~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 08999899987499999999999
No 337
>>1nn5_A Similar to deoxythymidylate kinase (thymidylate kinase); P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} (A:)
Probab=58.48 E-value=7.3 Score=18.10 Aligned_cols=66 Identities=14% Similarity=0.123 Sum_probs=38.7
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCCHHHHCCCCCCHHHHHHHHHH
Q ss_conf 2355304774067999999999998299578478885231001110277034312233430456689999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKW 525 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~iPHLl~pVvTd~~kA~~aL~w 525 (806)
-..|.|..|||||...+.+--.+=+..-+.. .++.-..+-.......|...+-.-.+......+-.
T Consensus 11 ~I~i~G~~GsGKST~a~~La~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVEALCAAGHRAE----LLRFPERSTEIGKLLSSYLQKKSDVEDHSVHLLFS 76 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEE----EEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEE----EEECCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 9999899888899999999999986799669----99648998618888887740445578799999999
No 338
>>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} (A:1-155)
Probab=58.43 E-value=10 Score=16.96 Aligned_cols=106 Identities=20% Similarity=0.201 Sum_probs=57.7
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCCHHHHC---CC-CCCHHHHHHHHHHHHHHHHH
Q ss_conf 355304774067999999999998299578478885231001110277034312---23-34304566899999999999
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLT---PV-VTNPQKAVTVLKWLVCEMEE 532 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~iPHLl~---pV-vTd~~kA~~aL~w~V~EMe~ 532 (806)
-+|+|..|||||-...-+ ++.+..+..+-+.+++-.=.....+-.-++-. .+ +.+..
T Consensus 15 ~~i~G~~GsGKTtl~lq~----a~~~~~~g~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 75 (155)
T 2b8t_A 15 EFITGPMFAGKTAELIRR----LHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAP--------------- 75 (155)
T ss_dssp EEEECSTTSCHHHHHHHH----HHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTH---------------
T ss_pred EEEECCCCCHHHHHHHHH----HHHHHHCCCEEEEEEEEEEECCCCEEEEEECCCCCCEEECCCH---------------
T ss_conf 999945177889999999----9999987994999988056147871586506632314431431---------------
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCCHHHH
Q ss_conf 99999870899689999999988744786677544677654543222332232346986877634468888732100588
Q gi|254780799|r 533 RYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVARKDIES 612 (806)
Q Consensus 533 RY~l~a~~~vRni~~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ivviiDElaDlmm~~~~~ve~ 612 (806)
..-+.+.+ ..+...+-+++|||+.-+. +
T Consensus 76 --------------~~~~~i~~------------------------------~~~~~~~~~iiiD~~~~l~--------~ 103 (155)
T 2b8t_A 76 --------------EILNYIMS------------------------------NSFNDETKVIGIDEVQFFD--------D 103 (155)
T ss_dssp --------------HHHHHHHS------------------------------TTSCTTCCEEEECSGGGSC--------T
T ss_pred --------------HHHHHHHH------------------------------HHHCCCCCEEEEECHHHCC--------H
T ss_conf --------------56779987------------------------------6316776599980001133--------4
Q ss_pred HHHHHHHHHHHCCEEEEEEEC
Q ss_conf 999999866414237999965
Q gi|254780799|r 613 AVQRLAQMARASGIHVIMATQ 633 (806)
Q Consensus 613 ~i~rlaq~ara~GiHli~aTq 633 (806)
.+..++.+.+..||+..++-.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~l 124 (155)
T 2b8t_A 104 RICEVANILAENGFVVIISGL 124 (155)
T ss_dssp HHHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHHHHHHHCCCEEEEEEE
T ss_conf 689999999851832899976
No 339
>>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase; HET: AP5; 1.63A {Saccharomyces cerevisiae} (A:1-122,A:185-220)
Probab=58.41 E-value=5.4 Score=19.12 Aligned_cols=18 Identities=28% Similarity=0.542 Sum_probs=15.1
Q ss_pred CCCEEEEEECCCCHHH-HH
Q ss_conf 0202355304774067-99
Q gi|254780799|r 453 RMPHLLIAGTTGSGKS-VA 470 (806)
Q Consensus 453 kMPHLLIAGtTGSGKS-V~ 470 (806)
|-+.++|.|..||||| +|
T Consensus 3 ~~~rI~I~GpPGSGKsT~a 21 (158)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQA 21 (158)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
T ss_conf 7318999899999879999
No 340
>>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 2vb6_A* 2vas_A* (A:81-241,A:442-459,A:657-672)
Probab=58.39 E-value=11 Score=16.79 Aligned_cols=27 Identities=19% Similarity=0.400 Sum_probs=17.6
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHC
Q ss_conf 235530477406799999999999829
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRM 482 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~ 482 (806)
++++-|-.||||+....-++-.|.+..
T Consensus 62 sIIisGeSGSGKTe~~k~il~~L~~~~ 88 (195)
T 2v26_A 62 SIIVSGESGAGKTENTKFVLRYLTESY 88 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHC
T ss_conf 699965888982799999999999861
No 341
>>1i54_A Cytochrome C; zinc-porphyrin, mixed-metal, electron transport; HET: HEM ZNH; 1.50A {Thunnus thynnus} (A:)
Probab=58.33 E-value=6.9 Score=18.29 Aligned_cols=22 Identities=23% Similarity=0.206 Sum_probs=16.8
Q ss_pred EEECCCCHHHHHHHHHHHHHCC
Q ss_conf 8833489889999999997128
Q gi|254780799|r 692 IHGPFVSDIEVEKVVSHLKTQG 713 (806)
Q Consensus 692 ~~g~~v~~~ev~~v~~~~~~q~ 713 (806)
-++..+||+||..|+.|+++++
T Consensus 81 ~~~~~Ls~~ei~~i~aYl~sl~ 102 (103)
T 1i54_A 81 IFAGIKKKGERQDLVAYLKSAT 102 (103)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHHHHHHC
T ss_conf 8889999999999999999853
No 342
>>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} (A:1-202)
Probab=58.24 E-value=8.3 Score=17.69 Aligned_cols=30 Identities=23% Similarity=0.344 Sum_probs=23.5
Q ss_pred EEECCCCCEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 854100202355304774067999999999
Q gi|254780799|r 448 IADLARMPHLLIAGTTGSGKSVAINTMILS 477 (806)
Q Consensus 448 v~DLakMPHLLIAGtTGSGKSV~iN~iI~S 477 (806)
..-|..=+|++|-|-.|+|||.-++.+...
T Consensus 25 ~~~l~~~~~v~i~G~~G~GKTsL~~~~~~~ 54 (202)
T 2qen_A 25 EESLENYPLTLLLGIRRVGKSSLLRAFLNE 54 (202)
T ss_dssp HHHHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 999853997999819999899999999996
No 343
>>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 2jj9_A* 2jhr_A* 1jwy_A* 1jx2_A* 1fmv_A ... (A:82-460,A:593-690)
Probab=58.20 E-value=11 Score=16.77 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=8.1
Q ss_pred HHHHHHHCCHHHEEEE
Q ss_conf 9999982995784788
Q gi|254780799|r 475 ILSLLYRMTPAQCRLI 490 (806)
Q Consensus 475 I~SlLyk~~P~evkli 490 (806)
++.-|-++.|.=||-|
T Consensus 428 L~~~L~~t~phfIRCI 443 (477)
T 1w9i_A 428 LMATLETTNPHFVRCI 443 (477)
T ss_dssp HHHHHHTSEEEEEEEE
T ss_pred HHHHHCCCCCEEEEEE
T ss_conf 9998708898788886
No 344
>>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, structural genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} (A:1-61,A:124-208)
Probab=57.95 E-value=9.1 Score=17.39 Aligned_cols=37 Identities=24% Similarity=0.333 Sum_probs=27.9
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCC
Q ss_conf 355304774067999999999998299578478885231
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPK 495 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK 495 (806)
+.|+|-.|||||-.++.+---|-=+ =..|-++=+||=
T Consensus 25 I~i~G~~GsGKTT~~~~La~~l~~~--G~~v~~~~~D~~ 61 (146)
T 3c8u_A 25 VALSGAPGSGKSTLSNPLAAALSAQ--GLPAEVVPXDGF 61 (146)
T ss_dssp EEEECCTTSCTHHHHHHHHHHHHHT--TCCEEEEESGGG
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC--CCCCEEECCCEE
T ss_conf 9988989998999999999996021--455403124405
No 345
>>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} (A:1-209)
Probab=57.94 E-value=3.9 Score=20.16 Aligned_cols=16 Identities=38% Similarity=0.611 Sum_probs=14.1
Q ss_pred EEEEEECCCCHHHHHH
Q ss_conf 2355304774067999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAI 471 (806)
Q Consensus 456 HLLIAGtTGSGKSV~i 471 (806)
|+++.-.|||||+.+-
T Consensus 42 dvi~~a~TGsGKT~~~ 57 (209)
T 1oyw_A 42 DCLVVXPTGGGKSLCY 57 (209)
T ss_dssp CEEEECSCHHHHHHHH
T ss_pred CEEEECCCCCHHHHHH
T ss_conf 8899869984699999
No 346
>>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} (A:)
Probab=57.81 E-value=7.7 Score=17.97 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=17.3
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 3553047740679999999999982
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMILSLLYR 481 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~SlLyk 481 (806)
..|+|..|||||-..+.+.--+=.+
T Consensus 25 I~I~G~~GsGKtTla~~L~~~l~~~ 49 (201)
T 1rz3_A 25 LGIDGLSRSGKTTLANQLSQTLREQ 49 (201)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 9977987379999999999983615
No 347
>>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} (A:1-55)
Probab=57.79 E-value=11 Score=16.72 Aligned_cols=48 Identities=15% Similarity=0.315 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 770389999999965985000142220011778999999999779868
Q gi|254780799|r 739 ADDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIG 786 (806)
Q Consensus 739 ~d~l~~~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~ 786 (806)
.|++-.+-+++..+..+.|.+=|=+++.+.=.--.+-|+.||+.|||-
T Consensus 3 lD~~D~~IL~~L~~~~r~s~~eia~~lgis~~tv~~ri~rL~~~GiI~ 50 (55)
T 2cfx_A 3 LDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIK 50 (55)
T ss_dssp CCHHHHHHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCHHHH
T ss_conf 788999999999984899999999998858889999999872012444
No 348
>>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} (A:)
Probab=57.78 E-value=8.5 Score=17.62 Aligned_cols=50 Identities=14% Similarity=0.274 Sum_probs=35.5
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHCCHH------HEEEEEECCCHHHHHHCCC
Q ss_conf 0235530477406799999999999829957------8478885231001110277
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTMILSLLYRMTPA------QCRLIMIDPKMLELSVYDG 504 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~------evkliliDPK~vEls~Y~~ 504 (806)
-.+++.|-.|+|||--+|.+..+-.-...|. ..+.+-+|.+-+.+.+++-
T Consensus 4 ~ki~iiG~~~vGKTsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~ 59 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDT 59 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEC
T ss_conf 89999998991989999999729999984994341011368832992899999625
No 349
>>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} (A:1-230)
Probab=57.71 E-value=11 Score=16.71 Aligned_cols=147 Identities=22% Similarity=0.310 Sum_probs=73.3
Q ss_pred EECCCCCEEEEEECCCCHHHHHHHHHHHHH-------HHHCCH------------HHEEEEEECCC--HHHHHHCCCCHH
Q ss_conf 541002023553047740679999999999-------982995------------78478885231--001110277034
Q gi|254780799|r 449 ADLARMPHLLIAGTTGSGKSVAINTMILSL-------LYRMTP------------AQCRLIMIDPK--MLELSVYDGIPN 507 (806)
Q Consensus 449 ~DLakMPHLLIAGtTGSGKSV~iN~iI~Sl-------Lyk~~P------------~evkliliDPK--~vEls~Y~~iPH 507 (806)
..+.+==.+-|.|-.|||||.-+|+|.--+ +|...| ..+.++.-+|- ...+++|+.+-+
T Consensus 29 l~i~~Gei~~liG~nGaGKSTLlk~l~Gl~~p~~G~i~~~~~~i~~~~~~~~~~r~~ig~v~Q~~~~~l~~~~v~~~~~~ 108 (230)
T 3gfo_A 29 MNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSF 108 (230)
T ss_dssp EEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHH
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHHHHCCEEEEEECCCCCCCCCCEEHHHHH
T ss_conf 78869979999999998199999999647888888899999506545466777630243686224323675100110455
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHCCC--------CCHHHHH-HHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3122334304566899999999999999-9987089--------9689999-9999887447866775446776545432
Q gi|254780799|r 508 LLTPVVTNPQKAVTVLKWLVCEMEERYQ-KMSKIGV--------RNIDGFN-LKVAQYHNTGKKFNRTVQTGFDRKTGEA 577 (806)
Q Consensus 508 Ll~pVvTd~~kA~~aL~w~V~EMe~RY~-l~a~~~v--------Rni~~yN-~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (806)
-+.. .++.-+|+++|.. ++...|. +.+.|=+ +|+.-|++-
T Consensus 109 ~~~~-----------~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iA~aL------------------- 158 (230)
T 3gfo_A 109 GAVN-----------MKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVL------------------- 158 (230)
T ss_dssp HHHT-----------SCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHH-------------------
T ss_pred HHHH-----------CCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHH-------------------
T ss_conf 6664-----------3899999999999999884989887488010798998899998976-------------------
Q ss_pred CCCCCCCCCCCCCEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCC
Q ss_conf 223322323469868776344688887321005889999998664142379999657775
Q gi|254780799|r 578 IYETEHFDFQHMPYIVVVIDEMADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPSV 637 (806)
Q Consensus 578 ~~~~~~~~~~~lp~ivviiDElaDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPsv 637 (806)
-.=|- +++.||=--=+ -+...++...-|.+..+.-|+-.|+.|.....
T Consensus 159 ---------~~~P~-illlDEPt~~L--D~~~~~~i~~~l~~l~~~~g~tvl~vsHdl~~ 206 (230)
T 3gfo_A 159 ---------VMEPK-VLILDEPTAGL--DPMGVSEIMKLLVEMQKELGITIIIATHDIDI 206 (230)
T ss_dssp ---------TTCCS-EEEEECTTTTC--CHHHHHHHHHHHHHHHHHHCCEEEEEESCCSS
T ss_pred ---------HCCCC-EEEECCCCCCC--CHHHHHHHHHHHHHHHHHCCCEEEEECCCHHH
T ss_conf ---------34998-99843875578--98899999999999987369889999199999
No 350
>>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} (A:)
Probab=57.69 E-value=7 Score=18.28 Aligned_cols=37 Identities=19% Similarity=0.111 Sum_probs=27.1
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEE
Q ss_conf 2355304774067999999999998299578478885
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMI 492 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evklili 492 (806)
|+++..-|||||.-|--.-|++.+.+.....-.+++.
T Consensus 43 dvi~~A~TGSGKTlaf~lpil~~~~~~~~~~~~~~~~ 79 (219)
T 1q0u_A 43 SXVGQSQTGTGKTHAYLLPIXEKIKPERAEVQAVITA 79 (219)
T ss_dssp CEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEEC
T ss_pred CEEEECCCCCCCCCEEECCHHHCCCCCCCCCCCCCCC
T ss_conf 8899867999976432100222134234576553225
No 351
>>2blf_B SORB, sulfite\:cytochrome C oxidoreductase subunit B; sulfite oxidase, molybdopterin, C-type cytochrome, heme, electron transport; HET: MSS HEC; 1.8A {Starkeya novella} PDB: 2bpb_B* 2c9x_B* 2ca3_B* 2ca4_B* (B:)
Probab=57.65 E-value=6.4 Score=18.54 Aligned_cols=23 Identities=9% Similarity=0.190 Sum_probs=19.9
Q ss_pred EEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 25888334898899999999971
Q gi|254780799|r 689 VQRIHGPFVSDIEVEKVVSHLKT 711 (806)
Q Consensus 689 ~~r~~g~~v~~~ev~~v~~~~~~ 711 (806)
.++.|||.++|+|+..|++|+.+
T Consensus 57 M~~~~Ga~i~~ee~~~Iv~YL~~ 79 (81)
T 2blf_B 57 MIKVYHAPVDEADAKAIADYLAK 79 (81)
T ss_dssp HHHTSCCCCCHHHHHHHHHHHHH
T ss_pred HHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 99874999887789999999998
No 352
>>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A (A:1-56)
Probab=57.60 E-value=11 Score=16.70 Aligned_cols=50 Identities=24% Similarity=0.405 Sum_probs=44.9
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCH
Q ss_conf 77703899999999659850001422200117789999999997798680
Q gi|254780799|r 738 VADDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGP 787 (806)
Q Consensus 738 ~~d~l~~~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~ 787 (806)
.-|++-.+-+++..+..+.|.+-|=+++.+-=.-..+-|..||+.|+|-.
T Consensus 4 ~lD~~D~~Il~~Lq~~~r~~~~elA~~lg~S~~tv~~Ri~~L~~~GvI~~ 53 (56)
T 2w25_A 4 ALDDIDRILVRELAADGRATLSELATRAGLSVSAVQSRVRRLESRGVVQG 53 (56)
T ss_dssp CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCHHCC
T ss_conf 57299999999999848999999999989099999999999840101024
No 353
>>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide kinase; HET: NAD; 2.90A {Haemophilus influenzae} (A:162-365)
Probab=57.39 E-value=9 Score=17.44 Aligned_cols=65 Identities=11% Similarity=0.048 Sum_probs=34.5
Q ss_pred CCCEEEEEHH----HHHHHHHHCC--CHHHHHHHHHHHHHHHCCEEEEEEECCCCC-------CCCCHHHHHCCCCEE
Q ss_conf 6986877634----4688887321--005889999998664142379999657775-------355435541102515
Q gi|254780799|r 588 HMPYIVVVID----EMADLMMVAR--KDIESAVQRLAQMARASGIHVIMATQRPSV-------DVITGTIKANFPTRI 652 (806)
Q Consensus 588 ~lp~ivviiD----ElaDlmm~~~--~~ve~~i~rlaq~ara~GiHli~aTqrPsv-------dvitg~ikan~p~ri 652 (806)
..|-.||.+| ++.+=+..=+ .+-+....++.+.-.+.+.+.++-+..+-= ++|...++++-+.++
T Consensus 115 ~~~d~vi~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~i~~~i~~~l~~~~~~~~ 192 (204)
T 1lw7_A 115 YPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQVKAVIEKVLNEEEISEL 192 (204)
T ss_dssp SCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECSSHHHHHHHHHHHHHHHTSCCCCSSC
T ss_pred CCCCEEEECCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 399899991889973228988899999999999999999998699889983999999999999999999768962330
No 354
>>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* (A:172-364)
Probab=57.36 E-value=9.1 Score=17.39 Aligned_cols=23 Identities=35% Similarity=0.582 Sum_probs=21.2
Q ss_pred CCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 02023553047740679999999
Q gi|254780799|r 453 RMPHLLIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 453 kMPHLLIAGtTGSGKSV~iN~iI 475 (806)
.++.+.+.|-.|+|||--+|++.
T Consensus 7 ~~~~V~iiG~~~vGKSsLln~l~ 29 (193)
T 2qtf_A 7 NIPSIGIVGYTNSGKTSLFNSLT 29 (193)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHH
T ss_pred CCCEEEEEECCCCHHHHHHHHHH
T ss_conf 78669998345401418999977
No 355
>>1bf6_A Phosphotriesterase homology protein; hypothetical protein; 1.70A {Escherichia coli} (A:1-88,A:234-291)
Probab=57.33 E-value=8.3 Score=17.71 Aligned_cols=51 Identities=27% Similarity=0.451 Sum_probs=31.9
Q ss_pred EHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHCC-CCEEEE
Q ss_conf 63446888873210--------0588999999866414237999965777535543554110-251587
Q gi|254780799|r 595 VIDEMADLMMVARK--------DIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANF-PTRISF 654 (806)
Q Consensus 595 iiDElaDlmm~~~~--------~ve~~i~rlaq~ara~GiHli~aTqrPsvdvitg~ikan~-p~riaf 654 (806)
++.|+.++.-.-++ ..---+.+|.+.|++.|+|.|.+| |.=|..+ --||=.
T Consensus 35 ~~~el~~~k~~Gg~tiVd~T~~g~GRd~~~l~~is~~tGv~IV~~T---------G~y~~~~~~drilL 94 (146)
T 1bf6_A 35 ICQEMNDLMTRGVRNVIEMTNRYMGRNAQFMLDVMRETGINVVACT---------GYYQDAFFLNRVML 94 (146)
T ss_dssp HHHHHHHHHHTTEEEEEECCCGGGTCCHHHHHHHHHHHCCEEEEEE---------CCCCGGGCGGGEEE
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEE---------ECCCCCCCCCEEEE
T ss_conf 9999999998599889971888665589999999985788879874---------03555567855998
No 356
>>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* (A:)
Probab=57.27 E-value=8.9 Score=17.48 Aligned_cols=18 Identities=33% Similarity=0.530 Sum_probs=14.4
Q ss_pred EEEEECCCCHHHHHHHHH
Q ss_conf 355304774067999999
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTM 474 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~i 474 (806)
+.|.|..|||||--.+.+
T Consensus 24 I~i~G~~GsGKtTla~~L 41 (207)
T 2qt1_A 24 IGISGVTNSGKTTLAKNL 41 (207)
T ss_dssp EEEEESTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
T ss_conf 999999987699999999
No 357
>>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} (A:1749-1985)
Probab=57.26 E-value=10 Score=17.00 Aligned_cols=43 Identities=16% Similarity=0.116 Sum_probs=27.9
Q ss_pred EEEEHHHHHHHHHHC--CCHHHHHHHHHHHHHHHCCEEEEEEECC
Q ss_conf 877634468888732--1005889999998664142379999657
Q gi|254780799|r 592 IVVVIDEMADLMMVA--RKDIESAVQRLAQMARASGIHVIMATQR 634 (806)
Q Consensus 592 ivviiDElaDlmm~~--~~~ve~~i~rlaq~ara~GiHli~aTqr 634 (806)
-++|||-+..+-... .+..-..+.+|...+.-.++..++..|.
T Consensus 119 ~~~vid~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~ 163 (237)
T 3cmu_A 119 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 163 (237)
T ss_dssp CHHHHC-------CCHHHHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred CHHHCCCEEEHEEECCCHHHHHHHHHHHCCCCCCCCCCCEEEHHH
T ss_conf 101002111010322001235666453213224333321340002
No 358
>>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP binding protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} (A:)
Probab=57.22 E-value=8.9 Score=17.47 Aligned_cols=51 Identities=14% Similarity=0.046 Sum_probs=31.0
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHH---HHHCCHH---HEEEEEECCCHHHHHHCCCC
Q ss_conf 023553047740679999999999---9829957---84788852310011102770
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTMILSL---LYRMTPA---QCRLIMIDPKMLELSVYDGI 505 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~iI~Sl---Lyk~~P~---evkliliDPK~vEls~Y~~i 505 (806)
..++|-|..|+|||--||.+.-.- -|..+.. .++-+-.+...+++.++...
T Consensus 5 ~ki~iiG~~~~GKTSLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWE 61 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEECCCCEEECCCCCCCEECCCCCCC
T ss_conf 899999979959999999996799878669821212120312464101001233222
No 359
>>2v08_A Cytochrome C6; photosynthesis, cyano-bacteria, electron-transfer; HET: HEM; 2.0A {Phormidium laminosum} PDB: 1c6s_A* (A:)
Probab=57.12 E-value=3.9 Score=20.18 Aligned_cols=27 Identities=15% Similarity=0.155 Sum_probs=21.0
Q ss_pred EEEECCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 888334898899999999971289742
Q gi|254780799|r 691 RIHGPFVSDIEVEKVVSHLKTQGEAKY 717 (806)
Q Consensus 691 r~~g~~v~~~ev~~v~~~~~~q~~~~y 717 (806)
--++.-+||+||..|++|++++..+.|
T Consensus 60 p~~~~~ls~~di~~i~aYi~~~~~~~~ 86 (86)
T 2v08_A 60 PAFKGRLTDDQIAAVAAYVLDQAEKGW 86 (86)
T ss_dssp CCCTTTSCHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 754689999999999999999877669
No 360
>>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} (A:)
Probab=57.03 E-value=8.5 Score=17.62 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=16.8
Q ss_pred CCEEEEEECCCCHHHHHHHHHH
Q ss_conf 2023553047740679999999
Q gi|254780799|r 454 MPHLLIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 454 MPHLLIAGtTGSGKSV~iN~iI 475 (806)
-+-+++.|..|||||-..+.+-
T Consensus 8 ~~~I~l~G~~GsGKSTla~~La 29 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVA 29 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
T ss_conf 9489998999989899999999
No 361
>>1br2_A Myosin; muscle protein; HET: ADP; 2.90A {Gallus gallus} (A:79-279,A:454-532,A:676-719)
Probab=57.00 E-value=12 Score=16.63 Aligned_cols=28 Identities=25% Similarity=0.383 Sum_probs=19.2
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHC
Q ss_conf 0235530477406799999999999829
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTMILSLLYRM 482 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~iI~SlLyk~ 482 (806)
-..+|.|..||||+-..+-++--|.+..
T Consensus 92 QsIIisGESGSGKTe~~k~il~yL~~~~ 119 (324)
T 1br2_A 92 QSILCTGESGAGKTENTKKVIQYLAVVA 119 (324)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHC
T ss_conf 4799816877764699999999999860
No 362
>>2eth_A Transcriptional regulator, putative, MAR family; TM0816, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} (A:1-130)
Probab=56.90 E-value=12 Score=16.62 Aligned_cols=58 Identities=12% Similarity=0.132 Sum_probs=47.2
Q ss_pred HHHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHC-CCCCEEEECHH
Q ss_conf 99999999659850001422200117789999999997798680227-88726731712
Q gi|254780799|r 744 KQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPASS-TGKREILISSM 801 (806)
Q Consensus 744 ~~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~~g-~~~r~vl~~~~ 801 (806)
-..+.++...+..+.+-|-+++.+==.-..|+++.||++|+|--..+ .-.|.+.+.-.
T Consensus 47 ~~iL~~l~~~~~~t~~eLa~~~~i~~~~vs~~i~~L~~~glv~r~~~~~D~R~~~i~LT 105 (130)
T 2eth_A 47 LYAFLYVALFGPKKXKEIAEFLSTTKSNVTNVVDSLEKRGLVVREXDPVDRRTYRVVLT 105 (130)
T ss_dssp HHHHHHHHHHCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEEC
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCHHCCCC
T ss_conf 99999999859959999999989699899999999987888456520356641100218
No 363
>>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* (A:1-407)
Probab=56.73 E-value=7.4 Score=18.07 Aligned_cols=24 Identities=8% Similarity=0.106 Sum_probs=12.1
Q ss_pred HHHHCCCC-CHHHCCCCCCCCEEEE
Q ss_conf 34302210-0021045666666785
Q gi|254780799|r 426 VFEKNQCD-LAINLGKSIEGKPIIA 449 (806)
Q Consensus 426 ~f~~s~~~-L~iaLGKdI~G~pvv~ 449 (806)
+|++.+.. |--.=|-||.+-..|.
T Consensus 340 ~F~~g~~~vLvaTrGiDi~~v~~VI 364 (407)
T 2fsf_A 340 RWSDGLHQAVEAKEGVQIQNENQTL 364 (407)
T ss_dssp -----------------CCCCCEEE
T ss_pred CHHHHHHHHHHHHHCCCCCCCCCHH
T ss_conf 3420015789998298667776402
No 364
>>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* (A:)
Probab=56.70 E-value=7.9 Score=17.88 Aligned_cols=27 Identities=19% Similarity=0.304 Sum_probs=19.4
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHC
Q ss_conf 235530477406799999999999829
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRM 482 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~ 482 (806)
=.++.|..|||||---+.+=-.+=++.
T Consensus 7 ~I~i~G~~GsGKTTla~~La~~l~~~~ 33 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEYLVCHG 33 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 999899999999999999999972369
No 365
>>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} (A:1055-1291,A:1361-1404)
Probab=56.65 E-value=12 Score=16.59 Aligned_cols=116 Identities=22% Similarity=0.192 Sum_probs=64.9
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHH-----CCCCHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 355304774067999999999998299578478885231001110-----277034312233430456689999999999
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSV-----YDGIPNLLTPVVTNPQKAVTVLKWLVCEME 531 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~-----Y~~iPHLl~pVvTd~~kA~~aL~w~V~EMe 531 (806)
.+|+|..|||||..-=.++. .+.-..-+-+.||-.-=-... -.+..+|+..-.++...+...+...+.
T Consensus 30 tEI~G~pGsGKTtLaL~~~~----~~~~~g~~vlyIDtE~~~~~~r~~~lg~d~d~l~i~~~~~~~~~~~~i~~l~~--- 102 (281)
T 3cmu_A 30 VEIYGPESSGKTTLTLQVIA----AAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR--- 102 (281)
T ss_dssp EEEECCTTSSHHHHHHHHHH----HHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH---
T ss_pred EEEECCCCCCCEEEEEEECC----HHHHCCCCHHHCCHHHHHCHHHHHHCCCCHHHEEECCCCHHHHHHHHHHHHHH---
T ss_conf 64333677884788641037----33323551010003433468999871864331050374027899999987631---
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHC-----
Q ss_conf 999999870899689999999988744786677544677654543222332232346986877634468888732-----
Q gi|254780799|r 532 ERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVA----- 606 (806)
Q Consensus 532 ~RY~l~a~~~vRni~~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ivviiDElaDlmm~~----- 606 (806)
..+..+||||-++-|.-.+
T Consensus 103 --------------------------------------------------------~~~~~liVIDSi~al~~~~e~~~~ 126 (281)
T 3cmu_A 103 --------------------------------------------------------SGAVDVIVVDSVAALTPKAEIEGE 126 (281)
T ss_dssp --------------------------------------------------------HTCCSEEEESCGGGCCCHHHHHSC
T ss_pred --------------------------------------------------------HHHHEEEEHHHHHHHCCCEEECCC
T ss_conf --------------------------------------------------------110102202057651775034587
Q ss_pred ---------CCHHHHHHHHHHHHHHHCCEEEEEEECCC
Q ss_conf ---------10058899999986641423799996577
Q gi|254780799|r 607 ---------RKDIESAVQRLAQMARASGIHVIMATQRP 635 (806)
Q Consensus 607 ---------~~~ve~~i~rlaq~ara~GiHli~aTqrP 635 (806)
.+.+-..+.+|.-.|+-.++-+|+-.|--
T Consensus 127 ~~~~~~~~~a~~~s~~~~~L~~la~~~~~~vi~iNQ~~ 164 (281)
T 3cmu_A 127 IGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR 164 (281)
T ss_dssp TTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCE
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCEECCEEEEEECCCE
T ss_conf 68367779988899875217886011240799714221
No 366
>>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum} (A:1-78)
Probab=56.57 E-value=12 Score=16.58 Aligned_cols=41 Identities=22% Similarity=0.353 Sum_probs=34.9
Q ss_pred CCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCCCCC
Q ss_conf 98500014222001177899999999977986802278872
Q gi|254780799|r 754 NKASISYIQRRLGIGYNRAASIIENMEEKGVIGPASSTGKR 794 (806)
Q Consensus 754 ~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~~g~~~r 794 (806)
+--|.+-|-++|.++.+-+-+-+++|+++|+|-...|+|-+
T Consensus 27 ~LPse~~La~~~~vSr~tvr~al~~L~~~G~i~~~~~~G~~ 67 (78)
T 2di3_A 27 HLPSERALSETLGVSRSSLREALRVLEALGTISTATGSGPR 67 (78)
T ss_dssp BCCCHHHHHHHHTCCHHHHHHHHHHHHHHTSEECCSTTSGG
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHHHHHCEEEEECCCCCC
T ss_conf 99109999999895999999999998860803416797775
No 367
>>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} (A:)
Probab=56.51 E-value=9.2 Score=17.36 Aligned_cols=24 Identities=21% Similarity=0.486 Sum_probs=19.9
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 202355304774067999999999
Q gi|254780799|r 454 MPHLLIAGTTGSGKSVAINTMILS 477 (806)
Q Consensus 454 MPHLLIAGtTGSGKSV~iN~iI~S 477 (806)
--+++|.|.+|+|||-.+|.+...
T Consensus 8 ~~ki~iiG~~~vGKTsll~~~~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 569999999996989999999709
No 368
>>1xty_A PTH, peptidyl-tRNA hydrolase; mixed beta sheet; 1.80A {Pyrococcus abyssi} (A:)
Probab=56.36 E-value=12 Score=16.56 Aligned_cols=48 Identities=19% Similarity=0.158 Sum_probs=37.4
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEE-----EEECCEEEEEEEEECCCCCHHHHHH
Q ss_conf 256654578999999742486328998-----4104424444432147863999997
Q gi|254780799|r 328 SPKVMQNNACTLKSVLSDFGIQGEIVN-----VRPGPVITLYELEPAPGIKSSRIIG 379 (806)
Q Consensus 328 s~eeL~~nA~lLE~tL~dFGVe~~Vv~-----v~pGPVVTrYEi~PApGVKvSKI~n 379 (806)
|+++|++ |.+++++.|+...++. -.+..++|---+-|+|--++.+|++
T Consensus 63 ~e~~l~~----l~~~a~~~~l~~~~v~DAG~Tev~~gs~TviaigP~p~~~i~~itg 115 (120)
T 1xty_A 63 SLDEIIS----RAKKAETMNLPFSIIEDAGKTQLEPGTITCLGIGPAPENLVDSITG 115 (120)
T ss_dssp SHHHHHH----HHHHHHHTTCCEEEEECCSSSSSCTTCEEEEEEEEEEHHHHHHHHT
T ss_pred CHHHHHH----HHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCCCHHHHHHHHC
T ss_conf 9999999----9999998799889998499764399986899978788889888638
No 369
>>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor 2-oxoglutarate, asparaginyl hydroxylase,; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 1h2k_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1mze_A* 1mzf_A* 1iz3_A (A:33-306)
Probab=56.35 E-value=5.3 Score=19.18 Aligned_cols=19 Identities=37% Similarity=0.604 Sum_probs=14.2
Q ss_pred CCCHHHHCCCCCEEEECCC
Q ss_conf 8645786588754773689
Q gi|254780799|r 668 EQGAEQLLGQGDMLYMTGG 686 (806)
Q Consensus 668 ~~gae~Llg~gdml~~~~~ 686 (806)
..+-+-.|+.|||||+|+|
T Consensus 226 ~~~~~~~l~pGD~LyiP~g 244 (274)
T 3d8c_A 226 VVGYETVVGPGDVLYIPMY 244 (274)
T ss_dssp CCEEEEEECTTCEEEECTT
T ss_pred CCCCEEEECCCCEEEECCC
T ss_conf 8742899889988986899
No 370
>>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} (A:)
Probab=56.33 E-value=8.3 Score=17.71 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=17.3
Q ss_pred CCEEEEEECCCCHHHHHHHHHHH
Q ss_conf 20235530477406799999999
Q gi|254780799|r 454 MPHLLIAGTTGSGKSVAINTMIL 476 (806)
Q Consensus 454 MPHLLIAGtTGSGKSV~iN~iI~ 476 (806)
-+-..|.|..|||||...+.+--
T Consensus 4 ~~~I~i~G~~GsGKsTla~~La~ 26 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
T ss_conf 88499989999988999999999
No 371
>>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* (A:1-58,A:235-392)
Probab=56.20 E-value=12 Score=16.54 Aligned_cols=101 Identities=21% Similarity=0.285 Sum_probs=65.8
Q ss_pred EHHHHHHHHHHCC-CHHHHHHHHHHHHHHHC----CEEEEEEECCCCCCCCCHHHHHCCCCEEEEEECCCCCCHHHCCCC
Q ss_conf 6344688887321-00588999999866414----237999965777535543554110251587645866421233886
Q gi|254780799|r 595 VIDEMADLMMVAR-KDIESAVQRLAQMARAS----GIHVIMATQRPSVDVITGTIKANFPTRISFQVSSKIDSRTILGEQ 669 (806)
Q Consensus 595 iiDElaDlmm~~~-~~ve~~i~rlaq~ara~----GiHli~aTqrPsvdvitg~ikan~p~riaf~v~s~~dSrtild~~ 669 (806)
=.+|=.+++.-.| ..+..-..++++..|+. |-.++.+ . -....|+=++|.+...+|+..+.+
T Consensus 79 aL~~aL~~i~~eG~e~~~~r~~~l~~~l~~~l~~lg~~~~~~--~---------~~~~~~~v~~~~~p~g~~~~~i~~-- 145 (216)
T 2z9v_A 79 GLDVALDLYLNEGPEAVWARHALTAKAMRAGVTAMGLSVWAA--S---------DSIASPTTTAVRTPDGVDEKALRQ-- 145 (216)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSS--S---------GGGBCTTEEEEECCTTCCHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--C---------CCCCCCCCEEEECCCCCCHHHHHH--
T ss_conf 999999999987678999999999998787654035540145--5---------312488632442789999999999--
Q ss_pred CHHHHCCCCCEEEECC----CCCEEEE-E-ECCCCHHHHHHHHHHHHH
Q ss_conf 4578658875477368----9832588-8-334898899999999971
Q gi|254780799|r 670 GAEQLLGQGDMLYMTG----GGRVQRI-H-GPFVSDIEVEKVVSHLKT 711 (806)
Q Consensus 670 gae~Llg~gdml~~~~----~~~~~r~-~-g~~v~~~ev~~v~~~~~~ 711 (806)
.|+-++......+ ..+..|| | |.|.+++||.++++.+++
T Consensus 146 ---~L~~~~~i~i~~g~~~~~~~~~RIg~mg~~~t~edi~~~l~aL~~ 190 (216)
T 2z9v_A 146 ---AARARYGVVFSSGRGETLGKLTRIGHMGPTAQPIYAIAALTALGG 190 (216)
T ss_dssp ---HHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHH
T ss_pred ---HHHHHCCEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf ---999748989975765336888998578887868899999999999
No 372
>>1rk6_A D-aminoacylase; TIM barrel, beta barrel, insertion, hydrolase; 1.43A {Alcaligenes faecalis} (A:102-298,A:361-385,A:486-496)
Probab=56.14 E-value=12 Score=16.53 Aligned_cols=83 Identities=13% Similarity=0.061 Sum_probs=59.0
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC-EEEEHHHHHHC
Q ss_conf 32588833489889999999997128974211001245566677888887777038999999996598-50001422200
Q gi|254780799|r 688 RVQRIHGPFVSDIEVEKVVSHLKTQGEAKYIDIKDKILLNEEMRFSENSSVADDLYKQAVDIVLRDNK-ASISYIQRRLG 766 (806)
Q Consensus 688 ~~~r~~g~~v~~~ev~~v~~~~~~q~~~~y~~~~~~~~~~~~~~~~~~~~~~d~l~~~a~~~v~~~~~-~s~s~lqr~~~ 766 (806)
...-+.|.|.+++|+.++.+.+++.+.+-+.- .. + .+...++-+++++++-.+++. .-+|.|+-.-+
T Consensus 101 gl~y~Pg~~a~~~El~~l~~~~a~~g~~~~~H----~r-~-------~~~~~~~av~E~i~iAr~sG~~lhisHl~s~g~ 168 (233)
T 1rk6_A 101 GAFYPPAAHASTEEIIEVCRPLITHGGVYATH----MR-D-------EGEHIVQALEETFRIGRELDVPVVISHHKVMGK 168 (233)
T ss_dssp ETTSGGGTTCCHHHHHHHHTHHHHHTCEEEEE----CS-C-------SSTTHHHHHHHHHHHHHHHTSCEEECSCCCCSG
T ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC----CC-C-------CCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 44433322221477777654210257622100----02-3-------443301457999999987187437742112232
Q ss_pred CCHHHHHHHHHHHHHC
Q ss_conf 1177899999999977
Q gi|254780799|r 767 IGYNRAASIIENMEEK 782 (806)
Q Consensus 767 igy~raar~~~~~e~~ 782 (806)
..+.|..++++.+|++
T Consensus 169 ~~~~~~~~~L~~ieaa 184 (233)
T 1rk6_A 169 LNFGRSKETLALIEAA 184 (233)
T ss_dssp GGTTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
T ss_conf 0023344555544444
No 373
>>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} (F:92-284)
Probab=56.10 E-value=11 Score=16.70 Aligned_cols=40 Identities=15% Similarity=0.209 Sum_probs=30.7
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHH
Q ss_conf 235530477406799999999999829957847888523100
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKML 497 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~v 497 (806)
=+.+.|-+|||||-.++.+-..|.-+-. .|-++-.|+-.-
T Consensus 9 vi~itG~~GvGKTT~~~~La~~L~~~G~--~v~vi~~D~~~~ 48 (193)
T 1j8m_F 9 VIMLVGVQGTGKTTTAGKLAYFYKKKGF--KVGLVGADVYRP 48 (193)
T ss_dssp EEEEECSSCSSTTHHHHHHHHHHHHTTC--CEEEEECCCSSS
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCC--CCCEEECCCCCH
T ss_conf 9998466555621579999999996697--641000246544
No 374
>>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerization motif; HET: DNA; 2.85A {Pyrococcus furiosus} (A:113-349)
Probab=55.88 E-value=10 Score=17.08 Aligned_cols=58 Identities=12% Similarity=0.082 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHCCCCEEEEEECCCCCCHHHCCC
Q ss_conf 058899999986641423799996577753554355411025158764586642123388
Q gi|254780799|r 609 DIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRISFQVSSKIDSRTILGE 668 (806)
Q Consensus 609 ~ve~~i~rlaq~ara~GiHli~aTqrPsvdvitg~ikan~p~riaf~v~s~~dSrtild~ 668 (806)
.+-.....|.+.++-..+..++.+|.-... .+.--.....+-+...+.-+|-|..|..
T Consensus 148 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~i~l~~ 205 (237)
T 1pzn_A 148 KLAKHLADLHRLANLYDIAVFVTNQVQARP--DAFFGDPTRPIGGHILAHSATLRVYLRK 205 (237)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECC-----------------CCCCCTTCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECEEEEEC--CCCCCCCCCCCCCHHHHHHCCEEEEEEE
T ss_conf 999999999998622574999945357743--6567887434682271764858999994
No 375
>>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} (B:30-234)
Probab=55.60 E-value=8.5 Score=17.62 Aligned_cols=29 Identities=24% Similarity=0.175 Sum_probs=20.5
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCH
Q ss_conf 23553047740679999999999982995
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTP 484 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P 484 (806)
|+++.--|||||+-|----++..+.+..+
T Consensus 44 dvi~~A~TGsGKT~afllp~~~~~~~~~~ 72 (205)
T 1gku_B 44 SFAATAPTGVGKTSFGLAMSLFLALKGKR 72 (205)
T ss_dssp CEECCCCBTSCSHHHHHHHHHHHHTTSCC
T ss_pred HHHCCCCCCCCCCCHHHHHHHHHHHCCCE
T ss_conf 31013887767311688999999845865
No 376
>>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} (A:)
Probab=55.50 E-value=9.6 Score=17.22 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=18.3
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 202355304774067999999999
Q gi|254780799|r 454 MPHLLIAGTTGSGKSVAINTMILS 477 (806)
Q Consensus 454 MPHLLIAGtTGSGKSV~iN~iI~S 477 (806)
|.=..|.|-.|||||.-.+.+--.
T Consensus 1 MkiI~i~G~~GsGKTT~a~~L~~~ 24 (194)
T 1nks_A 1 MKIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 919999899996989999999999
No 377
>>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} (A:347-572)
Probab=55.45 E-value=8.5 Score=17.64 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=18.7
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 1002023553047740679999999
Q gi|254780799|r 451 LARMPHLLIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 451 LakMPHLLIAGtTGSGKSV~iN~iI 475 (806)
+.+==-+-|-|..|||||..+|.|-
T Consensus 33 i~~Ge~v~iiG~NGaGKSTllk~i~ 57 (226)
T 3bk7_A 33 IRKGEVIGIVGPNGIGKTTFVKMLA 57 (226)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred EECCCEEEEECCCCCCCCCHHHHHC
T ss_conf 8478489997787765550435642
No 378
>>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ protein, ATP-binding, DNA-binding; 4.35A {Sulfolobus solfataricus} (A:328-477)
Probab=55.36 E-value=5 Score=19.36 Aligned_cols=37 Identities=22% Similarity=0.260 Sum_probs=21.8
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHH
Q ss_conf 23553047740679999999999982995784788852310011
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLEL 499 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEl 499 (806)
|+|+-|-+|+||+..-.+| +.=-.+.++=+++-.+.-
T Consensus 2 ~vLl~GppGtGKT~lA~~i-------a~~~~~~~~~~~~~~~~~ 38 (150)
T 3f9v_A 2 HILIIGDPGTAKSQMLQFI-------SRVAPRAVYTTGKGSTAA 38 (150)
T ss_dssp CEEEEESSCCTHHHHHHSS-------STTCSCEECCCTTCSTTT
T ss_pred EEEEECCCCCCHHHHHHHH-------HHHCCCCEECCCCCCCCC
T ss_conf 4665268753088999999-------875787552179877766
No 379
>>1xew_X SMC protein; structural maintenance of chromosomes, ABC-atpases, condensin, cohesin, cell cycle; 2.00A {Pyrococcus furiosus} (X:1-139)
Probab=55.35 E-value=12 Score=16.44 Aligned_cols=24 Identities=33% Similarity=0.380 Sum_probs=15.4
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 355304774067999999999998
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMILSLLY 480 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~SlLy 480 (806)
-+|.|..|||||--+.+|-.=+.-
T Consensus 29 nvi~G~NGsGKStil~Ai~~~~~~ 52 (139)
T 1xew_X 29 TAIVGANGSGKSNIGDAILFVLGG 52 (139)
T ss_dssp EEEEECTTSSSHHHHHHHHHHTTS
T ss_pred EEEECCCCCCCCHHHHHHHHHCCC
T ss_conf 799898888734398988874163
No 380
>>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19} (A:109-506)
Probab=55.35 E-value=5 Score=19.38 Aligned_cols=44 Identities=16% Similarity=0.216 Sum_probs=28.9
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCC
Q ss_conf 0235530477406799999999999829957847888523100111027
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYD 503 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~ 503 (806)
-|+||-|-+|+|||-.. ..+.+.+|..+...-+.+=-++.+.+.
T Consensus 132 ~~vLi~Ge~GtGK~~la-----r~ih~~s~~~~~~~~~~~~~~~~~~~~ 175 (398)
T 3f8t_A 132 LHVLLAGYPVVCSEILH-----HVLDHLAPRGVYVDLRRTELTDLTAVL 175 (398)
T ss_dssp CCEEEESCHHHHHHHHH-----HHHHHTCSSEEEEEGGGCCHHHHSEEE
T ss_pred EEEEEECCCCHHHHHHH-----HHHHHHHHHHEEECCCCCCCCCCCEEE
T ss_conf 35899789862384999-----999996132455114555445640367
No 381
>>1szp_A DNA repair protein RAD51; homologous recombination, asymmetry, RAD51 filament, DNA binding protein; HET: DNA; 3.25A {Saccharomyces cerevisiae} (A:82-321)
Probab=55.31 E-value=7.1 Score=18.23 Aligned_cols=47 Identities=17% Similarity=0.354 Sum_probs=31.9
Q ss_pred CEEEEEHHHHHHHHHH----------CCCHHHHHHHHHHHHHHHCCEEEEEEECCCC
Q ss_conf 8687763446888873----------2100588999999866414237999965777
Q gi|254780799|r 590 PYIVVVIDEMADLMMV----------ARKDIESAVQRLAQMARASGIHVIMATQRPS 636 (806)
Q Consensus 590 p~ivviiDElaDlmm~----------~~~~ve~~i~rlaq~ara~GiHli~aTqrPs 636 (806)
-.-++++|-...|+.. -..++-....+|...|+..++..++.+|.-.
T Consensus 113 ~~~~i~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~vi~~~~~~~ 169 (240)
T 1szp_A 113 RFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVA 169 (240)
T ss_dssp CEEEEEEETGGGGGSCC-----CTHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECC-
T ss_pred CCCEEEEEEHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHCHHHCCEEEEEEEEEEE
T ss_conf 762587530002101112576116677899999999997120121808999810155
No 382
>>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, hydrolase; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* (A:150-344,A:555-574)
Probab=54.98 E-value=10 Score=17.07 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=21.9
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 020235530477406799999999999
Q gi|254780799|r 453 RMPHLLIAGTTGSGKSVAINTMILSLL 479 (806)
Q Consensus 453 kMPHLLIAGtTGSGKSV~iN~iI~SlL 479 (806)
+=+..+|-|-.|+|||..+++++--+-
T Consensus 54 ~~~~~~i~G~pGTGKT~~~~al~~~~~ 80 (215)
T 3e1s_A 54 GHRLVVLTGGPGTGKSTTTKAVADLAE 80 (215)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HCCCEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 399568317753117999999999998
No 383
>>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural genomics, PSI-2, protein structure initiative; 2.09A {Listeria innocua} (A:1-76)
Probab=54.95 E-value=12 Score=16.40 Aligned_cols=55 Identities=11% Similarity=0.169 Sum_probs=41.0
Q ss_pred CCCHHHHHHHHHH----HH------CCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCCC
Q ss_conf 7770389999999----96------5985000142220011778999999999779868022788
Q gi|254780799|r 738 VADDLYKQAVDIV----LR------DNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPASSTG 792 (806)
Q Consensus 738 ~~d~l~~~a~~~v----~~------~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~~g~~ 792 (806)
...++|+++.+-+ .. ++--|..-|-++|.|+.+-+.+-+..||++|+|--..|.|
T Consensus 6 ~~~~~~~~i~~~i~~~I~~g~~~~g~~lpse~~La~~~~vSr~tvr~al~~L~~~G~i~~~~~~G 70 (76)
T 3edp_A 6 AKKPLFEVIASKIKDSINRDEYKTGXLXPNETALQEIYSSSRTTIRRAVDLLVEEGLVVRKNGVG 70 (76)
T ss_dssp -CCCHHHHHHHHHHHHHHTTSSCCCC--CCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETTTE
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCEECCCCE
T ss_conf 68889999999999999849999929992899999997949999999999999741613068866
No 384
>>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, alternative splicing, mental retardation, metal-binding; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 2wwu_A* (A:1-274)
Probab=54.54 E-value=11 Score=16.86 Aligned_cols=89 Identities=13% Similarity=0.219 Sum_probs=44.6
Q ss_pred HCCEEEEEEECCC----CCCCC-CHHHHHCCCCEEEEEECCCCCCH---------------HHCC---CCCHHHHCCCCC
Q ss_conf 1423799996577----75355-43554110251587645866421---------------2338---864578658875
Q gi|254780799|r 623 ASGIHVIMATQRP----SVDVI-TGTIKANFPTRISFQVSSKIDSR---------------TILG---EQGAEQLLGQGD 679 (806)
Q Consensus 623 a~GiHli~aTqrP----svdvi-tg~ikan~p~riaf~v~s~~dSr---------------tild---~~gae~Llg~gd 679 (806)
+....+-+...+= -.|.- +..+=.++-.+--|.+...-++. ..+. ..+=+-.|+-||
T Consensus 146 ~~~~~~~~g~~gs~t~~H~d~~~~~~~~~~i~G~K~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pGD 225 (274)
T 3k3o_A 146 NVQKYCLMSVRDSYTDFHIDFGGTSVWYHVLKGEKIFYLIRPTNANLTLFECWSSSSNQNEMFFGDQVDKCYKCSVKQGQ 225 (274)
T ss_dssp CCSCEEEEECTTEEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHTSTTGGGSCGGGTSSCCEEEEEETTC
T ss_pred CCEEEEEEECCCCCCCEEECCCCCCEEEEEECCEEEEEEECCCCCCCCCCCCCCCCHHHHHHCCHHHCCCEEEEEECCCC
T ss_conf 75368999789999987788999856899952438999968750355555555664145554304424735999988998
Q ss_pred EEEECCCC-CE-------EEEEECCCCHHHHHHHHHHHHH
Q ss_conf 47736898-32-------5888334898899999999971
Q gi|254780799|r 680 MLYMTGGG-RV-------QRIHGPFVSDIEVEKVVSHLKT 711 (806)
Q Consensus 680 ml~~~~~~-~~-------~r~~g~~v~~~ev~~v~~~~~~ 711 (806)
+||+|+|- .- .=+..-|.+........++++.
T Consensus 226 ~LyiP~gw~H~v~~~~~sis~~~nf~~~~~~~~~~~~~~~ 265 (274)
T 3k3o_A 226 TLFIPTGWIHAVLTPVDCLAFGGNFLHSLNIEMQLKAYEI 265 (274)
T ss_dssp EEEECTTCEEEEEEEEEEEEEEEEECCSTTHHHHHHHHHH
T ss_pred EEEECCCCEEEEECCCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8986899648987587879983654874438999989999
No 385
>>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} (A:)
Probab=54.28 E-value=9.8 Score=17.16 Aligned_cols=30 Identities=17% Similarity=0.417 Sum_probs=20.5
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEE
Q ss_conf 35530477406799999999999829957847888
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIM 491 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~SlLyk~~P~evklil 491 (806)
+-|.|.-|||||.-+|+|.- ..|+.=..+.
T Consensus 7 ~~ivG~sGsGKsTLl~~l~g-----~~p~~g~i~~ 36 (198)
T 1lvg_A 7 VVLSGPSGAGKSTLLKKLFQ-----EHSSIFGFSV 36 (198)
T ss_dssp EEEECCTTSSHHHHHHHHHH-----HHTTTEEECC
T ss_pred EEEECCCCCCHHHHHHHHHH-----HCCCCEEEEE
T ss_conf 99999999999999999998-----5898725656
No 386
>>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} (A:)
Probab=54.25 E-value=4.6 Score=19.61 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=16.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 4898899999999971289742
Q gi|254780799|r 696 FVSDIEVEKVVSHLKTQGEAKY 717 (806)
Q Consensus 696 ~v~~~ev~~v~~~~~~q~~~~y 717 (806)
-+||+||..|++|++++..+.|
T Consensus 68 ~Lsd~ei~al~aYi~~~~~~~~ 89 (89)
T 1f1f_A 68 RLSPLQIEDVAAYVVDQAEKGW 89 (89)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHHCCC
T ss_conf 9999999999999999977759
No 387
>>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} (A:)
Probab=54.24 E-value=9.1 Score=17.40 Aligned_cols=66 Identities=20% Similarity=0.308 Sum_probs=36.5
Q ss_pred EEEHHHH-HHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHCCCCEEEEEECCC----CCCHHHCC
Q ss_conf 7763446-888873210058899999986641423799996577753554355411025158764586----64212338
Q gi|254780799|r 593 VVVIDEM-ADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRISFQVSSK----IDSRTILG 667 (806)
Q Consensus 593 vviiDEl-aDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPsvdvitg~ikan~p~riaf~v~s~----~dSrtild 667 (806)
+++-||= +-|=..+..++...|.+|.+ -|...|+-|+...+ =+++-.||.+--.-+ -+.+.+++
T Consensus 174 illlDEPts~LD~~~~~~i~~ll~~l~~----~G~tvi~vtHdl~~-------v~~iadri~vm~~G~iv~~G~~~~i~~ 242 (262)
T 1b0u_A 174 VLLFDEPTSALDPELVGEVLRIMQQLAE----EGKTMVVVTHEMGF-------ARHVSSHVIFLHQGKIEEEGDPEQVFG 242 (262)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHH----TTCCEEEECSCHHH-------HHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHH----CCCEEEEEECCHHH-------HHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 2786144456897788889887666664----39705999489999-------998699999998999999859999985
Q ss_pred CC
Q ss_conf 86
Q gi|254780799|r 668 EQ 669 (806)
Q Consensus 668 ~~ 669 (806)
.+
T Consensus 243 ~p 244 (262)
T 1b0u_A 243 NP 244 (262)
T ss_dssp SC
T ss_pred CC
T ss_conf 89
No 388
>>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} (C:1-214)
Probab=54.07 E-value=9.5 Score=17.27 Aligned_cols=152 Identities=15% Similarity=0.180 Sum_probs=69.4
Q ss_pred EEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCCHHHHC---CC-------CCCHH
Q ss_conf 854100202355304774067999999999998299578478885231001110277034312---23-------34304
Q gi|254780799|r 448 IADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLT---PV-------VTNPQ 517 (806)
Q Consensus 448 v~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~iPHLl~---pV-------vTd~~ 517 (806)
-.++.+==-+.|-|..|||||--+|.|.= -.+|++=+.-.- -+.-=...|-..|...+ .+ +....
T Consensus 25 s~~i~~Ge~~~iiG~nGsGKSTLlk~l~G----~~~p~~G~i~i~-~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (214)
T 2nq2_C 25 NFDLNKGDILAVLGQNGCGKSTLLDLLLG----IHRPIQGKIEVY-QSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFA 99 (214)
T ss_dssp EEEEETTCEEEEECCSSSSHHHHHHHHTT----SSCCSEEEEEEC-SCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTC
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHC----CCCCCCCEEEEC-CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 77887998999985899989999999956----999988558878-9357976645677355599999877776654414
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHCCCCCHHHHH-HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 5668999999999999999--9870899689999-999988744786677544677654543222332232346986877
Q gi|254780799|r 518 KAVTVLKWLVCEMEERYQK--MSKIGVRNIDGFN-LKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVV 594 (806)
Q Consensus 518 kA~~aL~w~V~EMe~RY~l--~a~~~vRni~~yN-~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ivv 594 (806)
+...--.+.+.++-++..+ +.+..+.++.|=. +|+.-|++- -.-|- ++
T Consensus 100 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAral----------------------------~~~p~-iL 150 (214)
T 2nq2_C 100 KPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAI----------------------------ASECK-LI 150 (214)
T ss_dssp CCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHH----------------------------HTTCS-EE
T ss_pred CCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHH----------------------------HCCCC-EE
T ss_conf 87689999999999872847576487633789999999999998----------------------------61898-77
Q ss_pred EHHHH-HHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCC
Q ss_conf 63446-8888732100588999999866414237999965777
Q gi|254780799|r 595 VIDEM-ADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPS 636 (806)
Q Consensus 595 iiDEl-aDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPs 636 (806)
+-||= |-|= ....+....-|.+.++.-|+-+|+.|.+++
T Consensus 151 iLDEPt~~LD---~~~~~~i~~~l~~l~~~~~~tii~vtHd~~ 190 (214)
T 2nq2_C 151 LLDEPTSALD---LANQDIVLSLLIDLAQSQNMTVVFTTHQPN 190 (214)
T ss_dssp EESSSSTTSC---HHHHHHHHHHHHHHHHTSCCEEEEEESCHH
T ss_pred EEECCCCCCC---HHHHHHHHHHHHHHHHHCCCEEEEECCCHH
T ss_conf 8607877789---889999999999999826988999848999
No 389
>>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiative; 2.40A {Pseudomonas aeruginosa} (A:30-123)
Probab=54.01 E-value=11 Score=16.72 Aligned_cols=57 Identities=14% Similarity=0.129 Sum_probs=42.8
Q ss_pred HHHHHHHHCC-CEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHHH-CCCCCEEEECHH
Q ss_conf 9999999659-85000142220011778999999999779868022-788726731712
Q gi|254780799|r 745 QAVDIVLRDN-KASISYIQRRLGIGYNRAASIIENMEEKGVIGPAS-STGKREILISSM 801 (806)
Q Consensus 745 ~a~~~v~~~~-~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~~-g~~~r~vl~~~~ 801 (806)
..+.++.+.. -.+.+-|-+++.+--+.+.|+++.||++|+|--.. ..-.|.+++.-.
T Consensus 10 ~vL~~l~~~~~~~t~~~La~~~~~~~~~vs~~i~~L~~~GlI~r~~~~~D~R~~~i~lT 68 (94)
T 2hr3_A 10 VVLGAIDRLGGDVTPSELAAAERXRSSNLAALLRELERGGLIVRHADPQDGRRTRVSLS 68 (94)
T ss_dssp HHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC------CCEEEEC
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHCCC
T ss_conf 99999997699989999999979798899999999986697686427540047762366
No 390
>>2rgx_A Adenylate kinase; transferase(phosphotransferase), ATP-binding, cytoplasm, nucleotide-binding; HET: AP5; 1.90A {Aquifex aeolicus} PDB: 2rh5_A (A:1-112,A:171-206)
Probab=53.64 E-value=6.4 Score=18.56 Aligned_cols=15 Identities=33% Similarity=0.620 Sum_probs=12.5
Q ss_pred EEEEEECCCCHHHHH
Q ss_conf 235530477406799
Q gi|254780799|r 456 HLLIAGTTGSGKSVA 470 (806)
Q Consensus 456 HLLIAGtTGSGKSV~ 470 (806)
..+|.|..|||||-.
T Consensus 2 iI~I~G~pGSGKTTl 16 (148)
T 2rgx_A 2 ILVFLGPPGAGKGTQ 16 (148)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
T ss_conf 899989999987999
No 391
>>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} (A:1-167)
Probab=53.56 E-value=10 Score=17.01 Aligned_cols=25 Identities=32% Similarity=0.569 Sum_probs=20.0
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 2023553047740679999999999
Q gi|254780799|r 454 MPHLLIAGTTGSGKSVAINTMILSL 478 (806)
Q Consensus 454 MPHLLIAGtTGSGKSV~iN~iI~Sl 478 (806)
-+|+|..|-.|.|||...-+|--.+
T Consensus 38 ~~~iLl~GppGtGKT~lA~alA~~~ 62 (167)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHEL 62 (167)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 8759988989988999999999986
No 392
>>3k2o_A Bifunctional arginine demethylase and lysyl- hydroxylase JMJD6; structural genomics consortium, SGC, alternative splicing, chromatin regulator; 1.75A {Homo sapiens} (A:1-292)
Probab=53.55 E-value=6.2 Score=18.63 Aligned_cols=25 Identities=20% Similarity=0.538 Sum_probs=15.4
Q ss_pred CCCCHHHHHHHHH-HHHHHHHHHHHH
Q ss_conf 3343045668999-999999999999
Q gi|254780799|r 512 VVTNPQKAVTVLK-WLVCEMEERYQK 536 (806)
Q Consensus 512 VvTd~~kA~~aL~-w~V~EMe~RY~l 536 (806)
||++..+.-.|.+ |..+...++|.-
T Consensus 72 vi~~~~~~w~a~~~w~~~~l~~~~~~ 97 (292)
T 3k2o_A 72 VLLNAQEGWSAQEKWTLERLKRKYRN 97 (292)
T ss_dssp EEESTTTTCTHHHHCSHHHHHHHSTT
T ss_pred EEECCCCCCCCCCCCHHHHHHHHCCC
T ss_conf 99589778874222379999987499
No 393
>>1q7s_A BIT1, protein CGI-147; apoptosis; 2.00A {Homo sapiens} (A:)
Probab=53.50 E-value=13 Score=16.24 Aligned_cols=48 Identities=13% Similarity=0.212 Sum_probs=33.3
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEE-----EEECCEEEEEEEEECCCCCHHHHHH
Q ss_conf 256654578999999742486328998-----4104424444432147863999997
Q gi|254780799|r 328 SPKVMQNNACTLKSVLSDFGIQGEIVN-----VRPGPVITLYELEPAPGIKSSRIIG 379 (806)
Q Consensus 328 s~eeL~~nA~lLE~tL~dFGVe~~Vv~-----v~pGPVVTrYEi~PApGVKvSKI~n 379 (806)
|+++|++ |.+++++.|+...++. -.+-.++|---+-|+|--++.+|++
T Consensus 60 ~e~~l~~----l~~~a~~~~l~~~~v~DAG~Tei~~gt~TvlaigP~p~~~i~~itg 112 (117)
T 1q7s_A 60 DEETLIA----LLAHAKMLGLTVSLIQDAGRTQIAPGSQTVLGIGPGPADLIDKVTG 112 (117)
T ss_dssp SHHHHHH----HHHHHHHTTCCEEEEEECSSSSEEEEEEEEEEEEEEEHHHHHHHHT
T ss_pred CHHHHHH----HHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCCCHHHHHHHHC
T ss_conf 9999999----9999998799789998699740399985899978788789889747
No 394
>>1w5s_A ORC2; CDC6, DNA replication initiation, DNA binding protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} (A:1-214)
Probab=53.38 E-value=9.4 Score=17.31 Aligned_cols=39 Identities=10% Similarity=0.069 Sum_probs=28.5
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHCCHHH--EEEEEEC
Q ss_conf 02355304774067999999999998299578--4788852
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTMILSLLYRMTPAQ--CRLIMID 493 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~e--vkliliD 493 (806)
.++|+.|-+|.|||....++...|-.+..... +.++.++
T Consensus 53 ~~ill~GppGtGKT~lak~ia~~l~~~~~~~~~~~~~~~~~ 93 (214)
T 1w5s_A 53 MIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 93 (214)
T ss_dssp EEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEC
T ss_conf 89864689986899999999999876304557874289843
No 395
>>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} (A:)
Probab=52.62 E-value=11 Score=16.85 Aligned_cols=23 Identities=17% Similarity=0.354 Sum_probs=17.7
Q ss_pred CCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 02023553047740679999999
Q gi|254780799|r 453 RMPHLLIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 453 kMPHLLIAGtTGSGKSV~iN~iI 475 (806)
+-+-.+|.|..|||||---+.+-
T Consensus 3 ~~~~I~i~G~~GsGKtTla~~La 25 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
T ss_conf 89889998899998799999999
No 396
>>2yz2_A Putative ABC transporter ATP-binding protein TM_0222; cobalt transport, hydrolase, inner membrane, membrane, nucleotide- binding; 2.30A {Thermotoga maritima MSB8} (A:)
Probab=52.59 E-value=10 Score=17.09 Aligned_cols=149 Identities=20% Similarity=0.257 Sum_probs=65.5
Q ss_pred EECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHC-CHHHEEEEEECC-CHHHHHHCCC------CHH--HHC-CCCCCHH
Q ss_conf 5410020235530477406799999999999829-957847888523-1001110277------034--312-2334304
Q gi|254780799|r 449 ADLARMPHLLIAGTTGSGKSVAINTMILSLLYRM-TPAQCRLIMIDP-KMLELSVYDG------IPN--LLT-PVVTNPQ 517 (806)
Q Consensus 449 ~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~-~P~evkliliDP-K~vEls~Y~~------iPH--Ll~-pVvTd~~ 517 (806)
..+.+==.+.+.|..|||||-.+++| ... +|+.=+. ++|= +.--...... -|+ ++. -|+.+..
T Consensus 28 l~v~~Ge~~~liG~nGaGKSTLlk~i-----~Gl~~p~~G~I-~~~g~~~~~~~~~~~ig~~~q~p~~~~~~~~v~~~~~ 101 (266)
T 2yz2_A 28 LVINEGECLLVAGNTGSGKSTLLQIV-----AGLIEPTSGDV-LYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVA 101 (266)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHH-----TTSSCCSEEEE-EETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHH
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHH-----HCCCCCCCCEE-EECCEEEECHHHHCCCCEEEECCHHCCCCCHHHHHHH
T ss_conf 78869989999999998699999999-----64657888769-9999980030011046158854001158511788887
Q ss_pred HHHHHH---HHHHHHHHHH-------HHHHHHCCCCCHHHHHH-HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 566899---9999999999-------99998708996899999-999887447866775446776545432223322323
Q gi|254780799|r 518 KAVTVL---KWLVCEMEER-------YQKMSKIGVRNIDGFNL-KVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDF 586 (806)
Q Consensus 518 kA~~aL---~w~V~EMe~R-------Y~l~a~~~vRni~~yN~-k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (806)
-+...+ ++....+++- ++-+.+--.+.+.|=++ |+.-|+.-
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~LSGGqkQrv~iA~aL---------------------------- 153 (266)
T 2yz2_A 102 FAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVI---------------------------- 153 (266)
T ss_dssp HTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHH----------------------------
T ss_pred HHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCHHHCCHHHHHHHHHHHHH----------------------------
T ss_conf 7775038808899999999987599968971578233999899999999876----------------------------
Q ss_pred CCCCEEEEEHHHH-HHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCC
Q ss_conf 4698687763446-8888732100588999999866414237999965777
Q gi|254780799|r 587 QHMPYIVVVIDEM-ADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPS 636 (806)
Q Consensus 587 ~~lp~ivviiDEl-aDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPs 636 (806)
-.=|- +++.||= +-|=..+.++ |.++-..-++.|.-.|+.|.+.+
T Consensus 154 ~~~P~-illLDEPt~gLD~~~~~~----i~~~i~~l~~~g~tii~vtHdl~ 199 (266)
T 2yz2_A 154 VHEPD-ILILDEPLVGLDREGKTD----LLRIVEKWKTLGKTVILISHDIE 199 (266)
T ss_dssp TTCCS-EEEEESTTTTCCHHHHHH----HHHHHHHHHHTTCEEEEECSCCT
T ss_pred HCCCC-EEEEECCCCCCCHHHHHH----HHHHHHHHHHCCCEEEEEECCHH
T ss_conf 05998-999717867778788999----99999865416948999948999
No 397
>>3irv_A Cysteine hydrolase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.60A {Pseudomonas syringae PV} (A:)
Probab=52.36 E-value=14 Score=16.11 Aligned_cols=57 Identities=25% Similarity=0.231 Sum_probs=43.9
Q ss_pred CCCCCCEEEEEHHHHHHHHHH-------CCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCC
Q ss_conf 234698687763446888873-------210058899999986641423799996577753554
Q gi|254780799|r 585 DFQHMPYIVVVIDEMADLMMV-------ARKDIESAVQRLAQMARASGIHVIMATQRPSVDVIT 641 (806)
Q Consensus 585 ~~~~lp~ivviiDElaDlmm~-------~~~~ve~~i~rlaq~ara~GiHli~aTqrPsvdvit 641 (806)
.+.++.-+++|||==-|++-- -..++...|.||.+.||..|++.|..++-+.-+-.+
T Consensus 17 ~~~~~~taLiviD~Q~~f~~~~~~~~~~~~~~~i~~i~~li~~ar~~~~~vi~~~~~~~~~~~~ 80 (233)
T 3irv_A 17 PINPLRTAVIVVDMQKVFCEPTGALYVKSTADIVQPIQKLLQAARAAQVMVIYLRHIVRGDGSD 80 (233)
T ss_dssp CCCGGGEEEEEECCBHHHHSTTSTTCCGGGGGGHHHHHHHHHHHHHTTCEEEEEEECBCSSSTT
T ss_pred CCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCH
T ss_conf 7999986999987822524899755777889999999999999998499768865225788503
No 398
>>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein LOLD; structural genomics, NPPSFA; 1.70A {Aquifex aeolicus VF5} PDB: 2pcl_A (A:)
Probab=52.32 E-value=14 Score=16.11 Aligned_cols=151 Identities=21% Similarity=0.274 Sum_probs=77.4
Q ss_pred EEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHH------HHHHCC--CC---H--HHHCCCCC
Q ss_conf 85410020235530477406799999999999829957847888523100------111027--70---3--43122334
Q gi|254780799|r 448 IADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKML------ELSVYD--GI---P--NLLTPVVT 514 (806)
Q Consensus 448 v~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~v------Els~Y~--~i---P--HLl~pVvT 514 (806)
-.++.+-=.+-|.|-.|||||--+|.|- .-.+|++=+..+ |-|-+ |++.|. .| + +-+.|=.|
T Consensus 24 s~~i~~GE~~~i~G~sGaGKSTLl~~i~----gl~~p~~G~i~~-~g~~i~~~~~~~~~~~r~~~ig~vfQ~~~l~~~~t 98 (224)
T 2pcj_A 24 SLSVKKGEFVSIIGASGSGKSTLLYILG----LLDAPTEGKVFL-EGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELT 98 (224)
T ss_dssp EEEEETTCEEEEEECTTSCHHHHHHHHT----TSSCCSEEEEEE-TTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSC
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHC----CCCCCCCCEEEE-CCEECCCCCHHHHHHHHCCCEEEECCCHHHCCHHH
T ss_conf 6788499899998899998899998863----898888467988-98864769866633543375413435413230167
Q ss_pred CHHHHHHHHHH---HHHHHHHH-HHHHHHCCCCCH--------HHHH-HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 30456689999---99999999-999987089968--------9999-99998874478667754467765454322233
Q gi|254780799|r 515 NPQKAVTVLKW---LVCEMEER-YQKMSKIGVRNI--------DGFN-LKVAQYHNTGKKFNRTVQTGFDRKTGEAIYET 581 (806)
Q Consensus 515 d~~kA~~aL~w---~V~EMe~R-Y~l~a~~~vRni--------~~yN-~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (806)
=-......|.| .-+|..+| -+++...|..+. .|=+ +|+.-|+.--
T Consensus 99 v~eni~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~p~~LSGGqkQRvaiAraL~---------------------- 156 (224)
T 2pcj_A 99 ALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALA---------------------- 156 (224)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTT----------------------
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCHHCCHHHHHHHHHHHHHH----------------------
T ss_conf 8887776888708999999999999998739776753885007888877999887562----------------------
Q ss_pred CCCCCCCCCEEEEEHHHHHHHHHHCCCHHH--HHHHHHHHHHHHCCEEEEEEECCCCC
Q ss_conf 223234698687763446888873210058--89999998664142379999657775
Q gi|254780799|r 582 EHFDFQHMPYIVVVIDEMADLMMVARKDIE--SAVQRLAQMARASGIHVIMATQRPSV 637 (806)
Q Consensus 582 ~~~~~~~lp~ivviiDElaDlmm~~~~~ve--~~i~rlaq~ara~GiHli~aTqrPsv 637 (806)
.=|. |++-||= |++=|.+ ..+.++-+.-+..|+-+|+.|.-+.+
T Consensus 157 ------~~P~-illlDEP-----Ts~LD~~~~~~v~~~l~~l~~~g~tii~vtHd~e~ 202 (224)
T 2pcj_A 157 ------NEPI-LLFADEP-----TGNLDSANTKRVMDIFLKINEGGTSIVMVTHEREL 202 (224)
T ss_dssp ------TCCS-EEEEEST-----TTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred ------CCCC-EEEECCC-----CCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHH
T ss_conf ------3787-5764588-----77999999999999999999629989999577999
No 399
>>1im5_A 180AA long hypothetical pyrazinamidase/nicotinamidase; pyrazinamide, tuberculosis, PZA resistance, drug resistance, metal ION catalysis; 1.65A {Pyrococcus horikoshii} (A:)
Probab=52.30 E-value=14 Score=16.10 Aligned_cols=47 Identities=15% Similarity=0.224 Sum_probs=36.6
Q ss_pred EEEEHHHHHHHHHH------CCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCC
Q ss_conf 87763446888873------210058899999986641423799996577753
Q gi|254780799|r 592 IVVVIDEMADLMMV------ARKDIESAVQRLAQMARASGIHVIMATQRPSVD 638 (806)
Q Consensus 592 ivviiDElaDlmm~------~~~~ve~~i~rlaq~ara~GiHli~aTqrPsvd 638 (806)
.++|||==-|++-- ...++...|.||+..||+.|+..|.+++.+.-+
T Consensus 5 aLlviD~Q~~f~~~~~~~~~~~~~~~~~i~~l~~~~r~~~~~Vi~~~~~~~~~ 57 (180)
T 1im5_A 5 ALIVVDMQRDFMPGGALPVPEGDKIIPKVNEYIRKFKEKGALIVATRDWHPEN 57 (180)
T ss_dssp EEEEECCBGGGSTTSSSCCTTGGGGHHHHHHHHHHHHHTTCEEEEEEECBCTT
T ss_pred EEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCC
T ss_conf 99998680676499865667899999999999999998498199986505677
No 400
>>1sgw_A Putative ABC transporter; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; 1.70A {Pyrococcus furiosus dsm 3638} (A:1-88,A:151-214)
Probab=52.28 E-value=14 Score=16.10 Aligned_cols=46 Identities=20% Similarity=0.403 Sum_probs=25.8
Q ss_pred CCEEEEEC----CCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECC
Q ss_conf 66678541----0020235530477406799999999999829957847888523
Q gi|254780799|r 444 GKPIIADL----ARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDP 494 (806)
Q Consensus 444 G~pvv~DL----akMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDP 494 (806)
|++++-|+ .+-=.+-+-|..|||||--+|.|. =-.+|++=+ |+||-
T Consensus 21 g~~vl~~is~~i~~Ge~v~lvGpnGsGKSTllk~i~----gl~~p~~G~-I~i~G 70 (152)
T 1sgw_A 21 DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTIS----TYLKPLKGE-IIYNG 70 (152)
T ss_dssp SSEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHT----TSSCCSEEE-EEETT
T ss_pred CCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHH----CCCCCCCCE-EEECC
T ss_conf 995870307898699799999999972999999996----630578778-99998
No 401
>>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* (A:)
Probab=52.21 E-value=12 Score=16.53 Aligned_cols=52 Identities=12% Similarity=-0.024 Sum_probs=32.0
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHC----CH--HHEEEEEECCCHHHHHHCCCCH
Q ss_conf 0235530477406799999999999829----95--7847888523100111027703
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTMILSLLYRM----TP--AQCRLIMIDPKMLELSVYDGIP 506 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~iI~SlLyk~----~P--~evkliliDPK~vEls~Y~~iP 506 (806)
-.++|-|..|+|||-.+|.++-.=.-.. .+ ...+.+.++-+.+.+.+++...
T Consensus 7 ~ki~iiG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~~ 64 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMW 64 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCC
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEECC
T ss_conf 8999999799499999999970877655778857899788775048844778884034
No 402
>>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} (A:)
Probab=52.01 E-value=11 Score=16.72 Aligned_cols=48 Identities=10% Similarity=0.042 Sum_probs=28.4
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHCCH----HH-EEEEEECCCHHHHHHC
Q ss_conf 023553047740679999999999982995----78-4788852310011102
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTMILSLLYRMTP----AQ-CRLIMIDPKMLELSVY 502 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~iI~SlLyk~~P----~e-vkliliDPK~vEls~Y 502 (806)
.-+++.|-.|+|||-.+|.++..=-....+ .+ -+.++.|.+...+-..
T Consensus 6 ~ki~iiG~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ 58 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLML 58 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEEEECCCCCCEEEEE
T ss_conf 99999998992989999999839788532322010022232002575113442
No 403
>>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural genomics consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} (A:)
Probab=51.94 E-value=14 Score=16.06 Aligned_cols=46 Identities=24% Similarity=0.334 Sum_probs=31.4
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHH
Q ss_conf 2355304774067999999999998299578478885231001110
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSV 501 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~ 501 (806)
++++.--|||||.-+--.=+++-|.+.....-..++.-..-+-..+
T Consensus 82 dvi~~A~TGsGKTlayllp~l~~l~~~~~~~~~~~~~p~~el~~q~ 127 (249)
T 3ber_A 82 DIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQI 127 (249)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHH
T ss_pred CEEEECCCCCCCCCCCHHHHHCEECCCCCCCCCCCCCCCHHHHHHH
T ss_conf 7899887765553110010000001357654542117755555555
No 404
>>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} (A:1-218)
Probab=51.73 E-value=8 Score=17.82 Aligned_cols=26 Identities=31% Similarity=0.523 Sum_probs=20.4
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 02023553047740679999999999
Q gi|254780799|r 453 RMPHLLIAGTTGSGKSVAINTMILSL 478 (806)
Q Consensus 453 kMPHLLIAGtTGSGKSV~iN~iI~Sl 478 (806)
.--|+|+-|-+|+||+..-.+|--.+
T Consensus 44 ~~~~iLl~G~pGtGKt~lAr~i~~~l 69 (218)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTAVRALAALL 69 (218)
T ss_dssp GGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 99718997899956999999999866
No 405
>>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle protein; HET: ADP; 2.30A {Argopecten irradians} (A:79-466,A:598-699)
Probab=51.70 E-value=14 Score=16.04 Aligned_cols=31 Identities=16% Similarity=0.270 Sum_probs=17.0
Q ss_pred CHHHHH---HH--HHHHHHHHHCCHHHEEEEEECCC
Q ss_conf 406799---99--99999998299578478885231
Q gi|254780799|r 465 SGKSVA---IN--TMILSLLYRMTPAQCRLIMIDPK 495 (806)
Q Consensus 465 SGKSV~---iN--~iI~SlLyk~~P~evkliliDPK 495 (806)
+.+||+ -+ ..++..|....|.=||=|==.+.
T Consensus 432 ~~~tv~~~F~~sL~~L~~~L~~t~~hfIRCIKPN~~ 467 (490)
T 1kk8_A 432 AFQTISAVHRESLNKLMKNLYSTHPHFVRCIIPNEL 467 (490)
T ss_dssp --CCHHHHHHHHHHHHHHHHTTEEEEEEEEECCCSS
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 311299999999999999986579889997788874
No 406
>>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural genomics, joint center for structural genomics, JCSG; 2.10A {Thermotoga maritima MSB8} (A:1-98,A:164-256)
Probab=51.62 E-value=11 Score=16.90 Aligned_cols=37 Identities=22% Similarity=0.361 Sum_probs=24.1
Q ss_pred CCCCCCCEEEEEC----CCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 4566666678541----002023553047740679999999
Q gi|254780799|r 439 GKSIEGKPIIADL----ARMPHLLIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 439 GKdI~G~pvv~DL----akMPHLLIAGtTGSGKSV~iN~iI 475 (806)
.|.-.+.+++-|+ .+==-+-+-|-.|||||..+++|.
T Consensus 22 ~~~y~~~~~l~~vsl~i~~Ge~~~ivG~nGaGKSTll~~i~ 62 (191)
T 1vpl_A 22 RKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIIS 62 (191)
T ss_dssp EEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHT
T ss_pred EEEECCEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 99999999972615688599799999999985999999996
No 407
>>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein kinase inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} (A:1-120,A:185-217)
Probab=51.52 E-value=14 Score=16.04 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=16.9
Q ss_pred CCCCEEEEEECCCCHHHHHHHHH
Q ss_conf 00202355304774067999999
Q gi|254780799|r 452 ARMPHLLIAGTTGSGKSVAINTM 474 (806)
Q Consensus 452 akMPHLLIAGtTGSGKSV~iN~i 474 (806)
.|=|..+|-|.-|||||.-=..+
T Consensus 3 ~rp~~I~IiG~PGSGKTTlak~L 25 (153)
T 3be4_A 3 SKKHNLILIGAPGSGKGTQCEFI 25 (153)
T ss_dssp GGCCEEEEEECTTSSHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHH
T ss_conf 76305999899999879999999
No 408
>>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A (A:1-173)
Probab=51.35 E-value=13 Score=16.35 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=20.1
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHH
Q ss_conf 020235530477406799999999
Q gi|254780799|r 453 RMPHLLIAGTTGSGKSVAINTMIL 476 (806)
Q Consensus 453 kMPHLLIAGtTGSGKSV~iN~iI~ 476 (806)
|-+.+++.|-.|.|||--+|.++-
T Consensus 4 k~~ki~iiG~~~vGKTsLi~~l~~ 27 (173)
T 3a1s_A 4 HXVKVALAGCPNVGKTSLFNALTG 27 (173)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 873899999999989999999958
No 409
>>1cno_A Cytochrome C552; electron transport, pseudomonas nautica, X RAY structure, multiwavelength anomalous dispersion, heme; HET: HEC; 2.20A {Marinobacter hydrocarbonoclasticus} (A:)
Probab=51.31 E-value=12 Score=16.43 Aligned_cols=23 Identities=13% Similarity=0.254 Sum_probs=17.8
Q ss_pred EECCCCHHHHHHHHHHHHHCCCC
Q ss_conf 83348988999999999712897
Q gi|254780799|r 693 HGPFVSDIEVEKVVSHLKTQGEA 715 (806)
Q Consensus 693 ~g~~v~~~ev~~v~~~~~~q~~~ 715 (806)
++.-+||+||..|++|++++..+
T Consensus 63 ~~~~ls~~ei~~i~aYi~~l~~~ 85 (87)
T 1cno_A 63 QATALSDADIANLAAYYASNPAA 85 (87)
T ss_dssp HHTTCCHHHHHHHHHHHHHSCTT
T ss_pred HHHCCCHHHHHHHHHHHHHCCCC
T ss_conf 88359999999999999988797
No 410
>>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.40A {Bacillus halodurans c-125} (A:)
Probab=51.27 E-value=6.8 Score=18.35 Aligned_cols=14 Identities=43% Similarity=0.783 Sum_probs=11.7
Q ss_pred EEEEECCCCHHHHH
Q ss_conf 35530477406799
Q gi|254780799|r 457 LLIAGTTGSGKSVA 470 (806)
Q Consensus 457 LLIAGtTGSGKSV~ 470 (806)
++|.|..|||||-.
T Consensus 5 I~i~G~~GsGKTT~ 18 (189)
T 2bdt_A 5 YIITGPAGVGKSTT 18 (189)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
T ss_conf 99989999898999
No 411
>>1c75_A Cytochrome C-553; heme, AB initio, atomic resolution; HET: HEM; 0.97A {Bacillus pasteurii} (A:)
Probab=51.11 E-value=11 Score=16.83 Aligned_cols=21 Identities=24% Similarity=0.321 Sum_probs=16.0
Q ss_pred EECCCCHHHHHHHHHHHHHCC
Q ss_conf 833489889999999997128
Q gi|254780799|r 693 HGPFVSDIEVEKVVSHLKTQG 713 (806)
Q Consensus 693 ~g~~v~~~ev~~v~~~~~~q~ 713 (806)
.+--+||+|+..|++|+++|.
T Consensus 51 P~~~lt~~e~~~i~~yi~~q~ 71 (71)
T 1c75_A 51 PGGIAKGAEAEAVAAWLAEKX 71 (71)
T ss_dssp CSCSSCHHHHHHHHHHHHTCC
T ss_pred CCCCCCHHHHHHHHHHHHHCC
T ss_conf 999999999999999999739
No 412
>>1cch_A Cytochrome C551; electron transport; HET: HEM; NMR {Pseudomonas stutzeri} (A:)
Probab=51.10 E-value=11 Score=16.89 Aligned_cols=17 Identities=12% Similarity=0.096 Sum_probs=13.3
Q ss_pred CCCHHHHHHHHHHHHHC
Q ss_conf 48988999999999712
Q gi|254780799|r 696 FVSDIEVEKVVSHLKTQ 712 (806)
Q Consensus 696 ~v~~~ev~~v~~~~~~q 712 (806)
=.||+|+.+|++|+++|
T Consensus 65 ~ls~eei~~i~ayi~sl 81 (82)
T 1cch_A 65 PVTEEEAKILAEWVLSL 81 (82)
T ss_dssp SCCHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHC
T ss_conf 69999999999999975
No 413
>>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} (A:73-317,A:427-443,A:654-697)
Probab=51.02 E-value=14 Score=15.96 Aligned_cols=12 Identities=17% Similarity=0.301 Sum_probs=7.4
Q ss_pred HHHHHHHHHCCC
Q ss_conf 999999742486
Q gi|254780799|r 337 CTLKSVLSDFGI 348 (806)
Q Consensus 337 ~lLE~tL~dFGV 348 (806)
+.+...|...|+
T Consensus 234 ~~~~~al~~lGf 245 (306)
T 1w7j_A 234 VNTRQACTLLGI 245 (306)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHCCC
T ss_conf 999999986499
No 414
>>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} (A:1-229)
Probab=50.95 E-value=14 Score=15.96 Aligned_cols=21 Identities=0% Similarity=-0.364 Sum_probs=10.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q ss_conf 000134678999999999999
Q gi|254780799|r 64 KNFLGYGGAIFADVAIQFFGI 84 (806)
Q Consensus 64 ~N~~G~lGA~iAd~L~~lFG~ 84 (806)
.++...+|..++..+...||.
T Consensus 71 ~~~~~~~~~~~~g~~~d~~g~ 91 (229)
T 1pw4_A 71 ISIAYGFSKFIMGSVSDRSNP 91 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999999999998197
No 415
>>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} (A:)
Probab=50.93 E-value=7.8 Score=17.89 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=19.4
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 23553047740679999999999982
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYR 481 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk 481 (806)
=..|+|-+|||||-.-+.+---|=.+
T Consensus 7 iIgI~G~sGSGKTTla~~L~~~L~~~ 32 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFRRE 32 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 99998998781999999999997056
No 416
>>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} (A:)
Probab=50.57 E-value=13 Score=16.21 Aligned_cols=50 Identities=18% Similarity=0.324 Sum_probs=29.8
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHH---HHCCHHH---EEEEEECCCHHHHHHCCC
Q ss_conf 0235530477406799999999999---8299578---478885231001110277
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTMILSLL---YRMTPAQ---CRLIMIDPKMLELSVYDG 504 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~iI~SlL---yk~~P~e---vkliliDPK~vEls~Y~~ 504 (806)
-+++|-|..|+|||--+|.++..=- |..+... .+.+-+|-+.+.+.+.+.
T Consensus 8 ~ki~ivG~~~vGKTsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~ 63 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDT 63 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEEC
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEECCCCCEEEECCC
T ss_conf 49999998998999999999859688765663221000011232685210332256
No 417
>>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} (A:74-358)
Probab=50.54 E-value=12 Score=16.64 Aligned_cols=92 Identities=13% Similarity=0.193 Sum_probs=54.8
Q ss_pred HHHCCEEEEEEECCCCC----CC-CCHHHHHCCCCEEEEEECCCCCCHH---------------HCC---CCCHHHHCCC
Q ss_conf 64142379999657775----35-5435541102515876458664212---------------338---8645786588
Q gi|254780799|r 621 ARASGIHVIMATQRPSV----DV-ITGTIKANFPTRISFQVSSKIDSRT---------------ILG---EQGAEQLLGQ 677 (806)
Q Consensus 621 ara~GiHli~aTqrPsv----dv-itg~ikan~p~riaf~v~s~~dSrt---------------ild---~~gae~Llg~ 677 (806)
.+.....+.+++++=.. |. =+..+=..+-.+=-|.+-.--+..- ... ...=|--|+-
T Consensus 155 ~~~~~~~~~~g~~gs~t~~h~d~d~~~~~~~qi~G~K~w~l~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~l~p 234 (285)
T 3kv4_A 155 RPNVQKYCLMSVRDSYTDFHIDFGGTSVWYHVLKGEKIFYLIRPTNANLTLFECWSSSSNQNEMFFGDQVDKCYKCSVKQ 234 (285)
T ss_dssp CCCCSCEEEEECTTEEEEEECCGGGCEEEEEEEESEEEEEEECCCHHHHHHHHHHHTCSSGGGSCGGGGSSCCEEEEEET
T ss_pred CCCCEEEEEEECCCCCCCEEECCCCCEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCHHHHCCCCCCCCEEEEEECC
T ss_conf 88865699993899888637889998377887676699999589866734244555664023321420156259999889
Q ss_pred CCEEEECCCC-CEE-------EEEECCCCHHHHHHHHHHHHHC
Q ss_conf 7547736898-325-------8883348988999999999712
Q gi|254780799|r 678 GDMLYMTGGG-RVQ-------RIHGPFVSDIEVEKVVSHLKTQ 712 (806)
Q Consensus 678 gdml~~~~~~-~~~-------r~~g~~v~~~ev~~v~~~~~~q 712 (806)
||+||+|+|- .-+ =+-.-|++.........+.+.+
T Consensus 235 GD~LyiP~gw~H~V~~~~~s~sv~~~f~~~~~~~~~~~~~~~~ 277 (285)
T 3kv4_A 235 GQTLFIPTGWIHAVLTPVDCLAFGGNFLHSLNIEMQLKAYEIE 277 (285)
T ss_dssp TCEEEECTTCEEEEEESSCEEEEEEEECCSTTHHHHHHHHHHH
T ss_pred CCEEEECCCCEEEEECCCCEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9889968996499974778799756507711158899999998
No 418
>>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer, structural genomics; 2.80A {Thermus thermophilus HB8} (A:1-231,A:359-409,A:723-758)
Probab=50.38 E-value=7 Score=18.25 Aligned_cols=11 Identities=45% Similarity=0.676 Sum_probs=4.6
Q ss_pred EECCCCHHHHH
Q ss_conf 30477406799
Q gi|254780799|r 460 AGTTGSGKSVA 470 (806)
Q Consensus 460 AGtTGSGKSV~ 470 (806)
||-||.+|++.
T Consensus 255 ~gmtgt~~~~~ 265 (318)
T 2ipc_A 255 AGMTGTAKTEE 265 (318)
T ss_dssp EEEESSCGGGH
T ss_pred HEEEECCCCCH
T ss_conf 11200202528
No 419
>>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein structure initiative; 3.20A {Agrobacterium tumefaciens str} (A:)
Probab=50.37 E-value=13 Score=16.19 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=17.6
Q ss_pred CCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 02023553047740679999999
Q gi|254780799|r 453 RMPHLLIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 453 kMPHLLIAGtTGSGKSV~iN~iI 475 (806)
+...+++.|..|||||-.-+.+-
T Consensus 8 ~~~~I~l~G~pGsGKTTla~~La 30 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALA 30 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
T ss_conf 98589998999988899999999
No 420
>>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A {Porphyra yezoensis} (A:)
Probab=50.32 E-value=5.1 Score=19.26 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=20.0
Q ss_pred EEECCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 88334898899999999971289742
Q gi|254780799|r 692 IHGPFVSDIEVEKVVSHLKTQGEAKY 717 (806)
Q Consensus 692 ~~g~~v~~~ev~~v~~~~~~q~~~~y 717 (806)
-++.-.||+|+..|++|++++..++|
T Consensus 60 ~~~~~ls~~ei~~i~aYi~~~~~~~w 85 (85)
T 1gdv_A 60 AFGGRLVDEDIEDAANYVLSQSEKGW 85 (85)
T ss_dssp CCTTTSCHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 76678999999999999999987649
No 421
>>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} (A:36-393,A:528-595)
Probab=50.14 E-value=15 Score=15.87 Aligned_cols=36 Identities=14% Similarity=0.217 Sum_probs=17.8
Q ss_pred CEEEEEECCCCHHHHHHH-----HHHHHHHHHCCHHHEEEE
Q ss_conf 023553047740679999-----999999982995784788
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAIN-----TMILSLLYRMTPAQCRLI 490 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN-----~iI~SlLyk~~P~evkli 490 (806)
|+--..++.+..+||+-- .-+++-|-...|.=+|=|
T Consensus 379 ~~~~~~~~~~~~~tv~~~f~~qL~~Lm~~l~~t~phfIRCI 419 (426)
T 1lkx_A 379 PPTRPEDSKKRPETAGSQFRNAMNALITTLLACSPHYVRCI 419 (426)
T ss_dssp C-----------CCHHHHHHHHHHHHHHHHTTSEEEEEEEE
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 77674344678771999999999999999757798799887
No 422
>>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bonds; 2.05A {Sulfolobus tokodaii str} (A:)
Probab=50.13 E-value=15 Score=15.87 Aligned_cols=55 Identities=7% Similarity=0.022 Sum_probs=44.4
Q ss_pred HHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHH-HCCCCCEEEECH
Q ss_conf 9999996598500014222001177899999999977986802-278872673171
Q gi|254780799|r 746 AVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPA-SSTGKREILISS 800 (806)
Q Consensus 746 a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~-~g~~~r~vl~~~ 800 (806)
-..++...+..+.+-|-.++.+--.-++|+++.||++|+|--. +....|.+.+.-
T Consensus 27 ll~~l~~~~~~t~~eLa~~l~i~~~tvs~~l~~L~~~glI~r~~~~~d~R~~~i~l 82 (109)
T 2d1h_A 27 LLKXVEIEKPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKTEGKKIGRPKYY 82 (109)
T ss_dssp HHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC-------CCEE
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCEEEE
T ss_conf 99999849698999999997887234999999999879863626877898734787
No 423
>>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus} (A:)
Probab=50.11 E-value=15 Score=15.86 Aligned_cols=37 Identities=35% Similarity=0.519 Sum_probs=19.1
Q ss_pred HHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCH
Q ss_conf 9659850001422200117789999999997798680
Q gi|254780799|r 751 LRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGP 787 (806)
Q Consensus 751 ~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~ 787 (806)
+..+..+++-|.+.|.+.-+...+-+..||+.|+|..
T Consensus 20 L~~g~~tv~eLa~~lgis~~tvS~HL~~L~~~GlV~~ 56 (165)
T 2vxz_A 20 LADGCKTTSLIQQRLGLSHGRAKALIYVLEKEGRVTR 56 (165)
T ss_dssp HTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEE
T ss_pred HHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEE
T ss_conf 9754508999999826508999999999986681699
No 424
>>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} (A:540-757)
Probab=49.92 E-value=7.6 Score=17.99 Aligned_cols=43 Identities=28% Similarity=0.271 Sum_probs=27.3
Q ss_pred ECCCCC-EEEEEECCCCHHHHHHHHHHHHHHHHCC-HHHEEEEEECCCHH
Q ss_conf 410020-2355304774067999999999998299-57847888523100
Q gi|254780799|r 450 DLARMP-HLLIAGTTGSGKSVAINTMILSLLYRMT-PAQCRLIMIDPKML 497 (806)
Q Consensus 450 DLakMP-HLLIAGtTGSGKSV~iN~iI~SlLyk~~-P~evkliliDPK~v 497 (806)
..++.| ++|+.|-||+||+-- +..|-+.. ..+-.|+.+|..-+
T Consensus 44 ~~~~~~~~il~~G~~GtGKt~l-----Ar~l~~~~~~~~~~fv~v~~~~~ 88 (218)
T 1qvr_A 44 DPNRPIGSFLFLGPTGVGKTEL-----AKTLAATLFDTEEAMIRIDMTEY 88 (218)
T ss_dssp CSSSCSEEEEEBSCSSSSHHHH-----HHHHHHHHHSSGGGEEEECTTTC
T ss_pred CCCCCCEEEEEECCCCCCHHHH-----HHHHHHHHCCCCCCEEEECCHHH
T ss_conf 9999865899877887337999-----99999996289640699624453
No 425
>>2pze_A Cystic fibrosis transmembrane conductance regulator; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A (A:)
Probab=49.79 E-value=10 Score=17.09 Aligned_cols=154 Identities=18% Similarity=0.223 Sum_probs=74.5
Q ss_pred CCEEEEECC----CCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCCH------HHHCCCC
Q ss_conf 666785410----020235530477406799999999999829957847888523100111027703------4312233
Q gi|254780799|r 444 GKPIIADLA----RMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIP------NLLTPVV 513 (806)
Q Consensus 444 G~pvv~DLa----kMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~iP------HLl~pVv 513 (806)
|.+++-|+. +==.+=|.|..|||||-.++.| +=..+|++=+ |.+|.|+-=...+.-++ +++-..-
T Consensus 20 ~~~~l~~isf~i~~Ge~~aiiG~nGaGKSTLlk~l----~G~~~p~~G~-I~~~g~i~~~~q~~~~~~~tv~eni~~~~~ 94 (229)
T 2pze_A 20 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMI----MGELEPSEGK-IKHSGRISFCSQFSWIMPGTIKENIIFGVS 94 (229)
T ss_dssp SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHH----TTSSCCSEEE-EEECSCEEEECSSCCCCSBCHHHHHHTTSC
T ss_pred CCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHH----HCCCCCCCCE-EEEEEEEEEECCCCCCCCCCHHHHEECCCC
T ss_conf 96025570899859999999999988799999999----5567778678-999524899816230467518866413524
Q ss_pred CCHHHHHHHHHH-----HHHHHHHHHHHHHHCCCCCHHHHH-HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 430456689999-----999999999999870899689999-99998874478667754467765454322233223234
Q gi|254780799|r 514 TNPQKAVTVLKW-----LVCEMEERYQKMSKIGVRNIDGFN-LKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQ 587 (806)
Q Consensus 514 Td~~kA~~aL~w-----~V~EMe~RY~l~a~~~vRni~~yN-~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (806)
.|-.....+++- .+..+..|++..-..+-.++.|=. +|+.-|++- -
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LSgGqkQrv~iARal----------------------------~ 146 (229)
T 2pze_A 95 YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAV----------------------------Y 146 (229)
T ss_dssp CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHH----------------------------H
T ss_pred CCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCHHHHHHHHHHH----------------------------H
T ss_conf 363569999999878999986544331234541467782033435888887----------------------------1
Q ss_pred CCCEEEEEHHHHHHHHHHCCCH--HHHHHHHHHHHHHHCCEEEEEEECCCC
Q ss_conf 6986877634468888732100--588999999866414237999965777
Q gi|254780799|r 588 HMPYIVVVIDEMADLMMVARKD--IESAVQRLAQMARASGIHVIMATQRPS 636 (806)
Q Consensus 588 ~lp~ivviiDElaDlmm~~~~~--ve~~i~rlaq~ara~GiHli~aTqrPs 636 (806)
+=| =|++.||=- ++=| -|..+.+........+-..|+-|+|+.
T Consensus 147 ~~p-~iliLDEPt-----s~LD~~~~~~i~~~l~~~~~~~~t~i~vth~~~ 191 (229)
T 2pze_A 147 KDA-DLYLLDSPF-----GYLDVLTEKEIFESCVCKLMANKTRILVTSKME 191 (229)
T ss_dssp SCC-SEEEEESTT-----TTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHH
T ss_pred CCC-CEEEECCCC-----CCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 199-899924955-----459989999999999998608998999968299
No 426
>>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} (A:27-127)
Probab=49.45 E-value=11 Score=16.84 Aligned_cols=58 Identities=14% Similarity=0.189 Sum_probs=44.1
Q ss_pred HHHHHHHHC--CCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHC-CCCCEEEECHHH
Q ss_conf 999999965--9850001422200117789999999997798680227-887267317125
Q gi|254780799|r 745 QAVDIVLRD--NKASISYIQRRLGIGYNRAASIIENMEEKGVIGPASS-TGKREILISSME 802 (806)
Q Consensus 745 ~a~~~v~~~--~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~~g-~~~r~vl~~~~~ 802 (806)
....++... +..|.+-|-+++.+--.-..|+++.||++|+|--... ...|.+++.-.+
T Consensus 19 ~vL~~l~~~~~~~~t~~~La~~~~~~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~i~LT~ 79 (101)
T 3jw4_A 19 RXIGYIYENQESGIIQKDLAQFFGRRGASITSXLQGLEKKGYIERRIPENNARQKNIYVLP 79 (101)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHHTTSBCCC--------CCCCBCH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCEEEECH
T ss_conf 9999998089999799999999897885899999999988896315777888860447898
No 427
>>1rzw_A Protein AF2095(GR4); beta-sheet of 4 parallel, anti-parallel beta-strands and 3 alpha-helices, structural genomics, PSI; NMR {Archaeoglobus fulgidus} (A:)
Probab=49.40 E-value=15 Score=15.79 Aligned_cols=48 Identities=21% Similarity=0.289 Sum_probs=38.3
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEE-----EEECCEEEEEEEEECCCCCHHHHHH
Q ss_conf 256654578999999742486328998-----4104424444432147863999997
Q gi|254780799|r 328 SPKVMQNNACTLKSVLSDFGIQGEIVN-----VRPGPVITLYELEPAPGIKSSRIIG 379 (806)
Q Consensus 328 s~eeL~~nA~lLE~tL~dFGVe~~Vv~-----v~pGPVVTrYEi~PApGVKvSKI~n 379 (806)
|+++|.+ |.+++++.|+...++. =.+..++|.--+.|+|--.+.+|++
T Consensus 57 ~e~~L~~----l~~~a~~~~l~~~~i~DAG~Tei~~gt~TvlaigP~p~~~i~~itg 109 (123)
T 1rzw_A 57 SLEELLG----IKHKAESLGLVTGLVQDAGLTEVPPGTITAVVIGPDEERKIDKVTG 109 (123)
T ss_dssp CHHHHHH----HHHHHHHTTCCEEEECCTTCCSCSTTSCEEEEEEEECHHHHHHHHT
T ss_pred CHHHHHH----HHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCCCHHHHHHHHC
T ss_conf 9999999----9999998799889998589750499986899987788889989739
No 428
>>2exv_A Cytochrome C-551; alpha helix, heme C, electron transport; HET: HEC; 1.86A {Pseudomonas aeruginosa} PDB: 2pac_A* 351c_A* 451c_A* 1dvv_A* (A:)
Probab=49.38 E-value=13 Score=16.37 Aligned_cols=20 Identities=25% Similarity=0.189 Sum_probs=14.7
Q ss_pred ECCCCHHHHHHHHHHHHHCC
Q ss_conf 33489889999999997128
Q gi|254780799|r 694 GPFVSDIEVEKVVSHLKTQG 713 (806)
Q Consensus 694 g~~v~~~ev~~v~~~~~~q~ 713 (806)
.-=.||+|+.+|++|+++|.
T Consensus 63 ~~~ls~~ei~~i~aYi~slk 82 (82)
T 2exv_A 63 PNAVSDDEAQTLAKWVLSQK 82 (82)
T ss_dssp CCCCCHHHHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHHHCC
T ss_conf 78979999999999999758
No 429
>>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} (K:1-243)
Probab=49.29 E-value=7.5 Score=18.02 Aligned_cols=29 Identities=17% Similarity=0.352 Sum_probs=20.6
Q ss_pred EEEEECCCCCEEEEEECCCCHHHHHHHHH
Q ss_conf 67854100202355304774067999999
Q gi|254780799|r 446 PIIADLARMPHLLIAGTTGSGKSVAINTM 474 (806)
Q Consensus 446 pvv~DLakMPHLLIAGtTGSGKSV~iN~i 474 (806)
-+-.++.+==-+-|.|-.|||||.-++.|
T Consensus 23 ~vsl~i~~Ge~~~iiG~sGsGKSTll~~i 51 (243)
T 1oxx_K 23 NVNINIENGERFGILGPSGAGKTTFMRII 51 (243)
T ss_dssp EEEEEECTTCEEEEECSCHHHHHHHHHHH
T ss_pred CCEEEECCCCEEEEECCCCCHHHHHHHHH
T ss_conf 53889889989999999996599999999
No 430
>>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} (A:)
Probab=49.21 E-value=15 Score=15.77 Aligned_cols=38 Identities=32% Similarity=0.343 Sum_probs=24.5
Q ss_pred EEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEE
Q ss_conf 6785410020235530477406799999999999829957847
Q gi|254780799|r 446 PIIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCR 488 (806)
Q Consensus 446 pvv~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evk 488 (806)
.+-.++.+-=..-|.|-+|||||.-++. |++.-|-+=.
T Consensus 38 ~vsl~i~~G~~vaivG~sGsGKSTL~~~-----l~gl~~~~G~ 75 (260)
T 2ghi_A 38 SINFFIPSGTTCALVGHTGSGKSTIAKL-----LYRFYDAEGD 75 (260)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHH-----HTTSSCCEEE
T ss_pred EEEEEECCCCEEEEECCCCCHHHHHHHH-----HHCCCCCCCE
T ss_conf 3489984998999998999809999999-----7323899973
No 431
>>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus} (A:)
Probab=49.13 E-value=11 Score=16.78 Aligned_cols=18 Identities=33% Similarity=0.558 Sum_probs=14.9
Q ss_pred CCCCHHHHHHHHHHHHHC
Q ss_conf 348988999999999712
Q gi|254780799|r 695 PFVSDIEVEKVVSHLKTQ 712 (806)
Q Consensus 695 ~~v~~~ev~~v~~~~~~q 712 (806)
+-+||+|+..|++|+++|
T Consensus 61 ~~Ls~~ei~~i~~yi~sl 78 (79)
T 2d0s_A 61 PQVAEADIEKIVRWVLTL 78 (79)
T ss_dssp TTSCHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHC
T ss_conf 559999999999999874
No 432
>>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} (A:1-94)
Probab=49.04 E-value=15 Score=15.75 Aligned_cols=57 Identities=12% Similarity=0.090 Sum_probs=45.3
Q ss_pred CCCCHHHHHHHHHHHH---------CCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCCCC
Q ss_conf 7777038999999996---------59850001422200117789999999997798680227887
Q gi|254780799|r 737 SVADDLYKQAVDIVLR---------DNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPASSTGK 793 (806)
Q Consensus 737 ~~~d~l~~~a~~~v~~---------~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~~g~~~ 793 (806)
.+..++|+++.+.+.+ -++-+..-|.++|.++-+-.-+-+.+|+.+|+|--..|.|-
T Consensus 24 ~~~~~l~~~i~~~l~~~I~~g~l~~G~~l~e~~La~~~~vSr~tvR~al~~L~~~Gli~~~~~~G~ 89 (94)
T 2hs5_A 24 LERTSRTTRVAGILRDAIIDGTFRPGARLSEPDICAALDVSRNTVREAFQILIEDRLVAHELNRGV 89 (94)
T ss_dssp ---CHHHHHHHHHHHHHHHHTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEE
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 677889999999999999829999909869999999979599999999999998878631226776
No 433
>>2qy9_A Cell division protein FTSY; SRP receptor, protein targeting, simibi class GTPase, cell cycle, GTP-binding, inner membrane, membrane; 1.90A {Escherichia coli} (A:93-290)
Probab=48.96 E-value=12 Score=16.43 Aligned_cols=62 Identities=16% Similarity=0.142 Sum_probs=38.1
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCC-----HHHHCCCCCCHHHHH
Q ss_conf 3553047740679999999999982995784788852310011102770-----343122334304566
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGI-----PNLLTPVVTNPQKAV 520 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~i-----PHLl~pVvTd~~kA~ 520 (806)
+-+-|-.|||||-.+|.+ +=+++.+=-+|.+.=.|+.+......-.+ ++.+.+..+...-+.
T Consensus 10 i~lvG~nGsGKSTl~~~L--ag~l~~~gg~v~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (198)
T 2qy9_A 10 ILMVGVNGVGKTTTIGKL--ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 76 (198)
T ss_dssp EEEECCTTSCHHHHHHHH--HHHHHTTTCCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCCHHH
T ss_pred EEEECCCCCCCCCHHHHH--HHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHH
T ss_conf 997413334654048899--9998744675069973121302688999888751985101356877899
No 434
>>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structural genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* (A:1-137,A:202-246)
Probab=48.93 E-value=14 Score=16.02 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=16.8
Q ss_pred CCCCCEEEEEECCCCHHHHHH
Q ss_conf 100202355304774067999
Q gi|254780799|r 451 LARMPHLLIAGTTGSGKSVAI 471 (806)
Q Consensus 451 LakMPHLLIAGtTGSGKSV~i 471 (806)
..|.+..+|.|.-|||||.--
T Consensus 24 ~~k~~rIiIiGpPGSGKsT~a 44 (182)
T 2bbw_A 24 ASKLLRAVILGPPGSGKGTVC 44 (182)
T ss_dssp --CCCEEEEECCTTSSHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHH
T ss_conf 503144999899999879999
No 435
>>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein-protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} (A:96-293)
Probab=48.87 E-value=15 Score=15.73 Aligned_cols=83 Identities=13% Similarity=0.103 Sum_probs=50.2
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHH----CCCCHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 355304774067999999999998299578478885231001110----2770343122334304566899999999999
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSV----YDGIPNLLTPVVTNPQKAVTVLKWLVCEMEE 532 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~----Y~~iPHLl~pVvTd~~kA~~aL~w~V~EMe~ 532 (806)
+-+.|.-|||||--++.+ +-+++.+=-.|-++=.|+.+.-... +.-.++.-....-..........|.+.+|+.
T Consensus 10 i~l~G~nG~GKTTl~~~L--a~~l~~~gg~v~i~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (198)
T 1rj9_A 10 VLVVGVNGVGKTTTIAKL--GRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAMKA 87 (198)
T ss_dssp EEEECSTTSSHHHHHHHH--HHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCCHHHHHH--HHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 995246677741189999--999865115400342142000067899985655685079668872078778999999998
Q ss_pred HHHHHHHCC
Q ss_conf 999998708
Q gi|254780799|r 533 RYQKMSKIG 541 (806)
Q Consensus 533 RY~l~a~~~ 541 (806)
+-.......
T Consensus 88 ~~~~~~~~~ 96 (198)
T 1rj9_A 88 RGYDLLFVD 96 (198)
T ss_dssp HTCSEEEEC
T ss_pred CCCCEEEEC
T ss_conf 699989975
No 436
>>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} (A:392-573)
Probab=48.87 E-value=15 Score=15.73 Aligned_cols=30 Identities=17% Similarity=0.257 Sum_probs=20.5
Q ss_pred CCC-EEEEEECCCCHHHHHHHHHHHHHHHHC
Q ss_conf 020-235530477406799999999999829
Q gi|254780799|r 453 RMP-HLLIAGTTGSGKSVAINTMILSLLYRM 482 (806)
Q Consensus 453 kMP-HLLIAGtTGSGKSV~iN~iI~SlLyk~ 482 (806)
.|| -++|.|..|||||---+.+--.+=+..
T Consensus 3 ~~~~~I~i~G~~GsGKsTla~~La~~l~~~~ 33 (182)
T 1m8p_A 3 TQGFTIFLTGYMNSGKDAIARALQVTLNQQG 33 (182)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 7765999967899887599999999999747
No 437
>>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} (A:)
Probab=48.74 E-value=14 Score=15.97 Aligned_cols=19 Identities=26% Similarity=0.478 Sum_probs=14.4
Q ss_pred CEEEEEECCCCHHHHHHHH
Q ss_conf 0235530477406799999
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINT 473 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~ 473 (806)
+-..|.|..|||||--...
T Consensus 21 ~~I~i~G~~GsGKsTla~~ 39 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVK 39 (201)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
T ss_conf 4799989999998999999
No 438
>>1w2l_A Cytochrome oxidase subunit II; cytochrome C domain, oxidoreductase; HET: HEM; 1.3A {Rhodothermus marinus} (A:1-18,A:54-99)
Probab=48.53 E-value=12 Score=16.38 Aligned_cols=16 Identities=31% Similarity=0.513 Sum_probs=13.5
Q ss_pred CCHHHHHHHHHHHHHC
Q ss_conf 8988999999999712
Q gi|254780799|r 697 VSDIEVEKVVSHLKTQ 712 (806)
Q Consensus 697 v~~~ev~~v~~~~~~q 712 (806)
+||+||..+|+|+|++
T Consensus 48 Lsd~Ei~aLIaYIKSL 63 (64)
T 1w2l_A 48 LSEREVAALIEFIKQQ 63 (64)
T ss_dssp CCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHC
T ss_conf 9999999999999974
No 439
>>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} (A:)
Probab=48.43 E-value=8.4 Score=17.67 Aligned_cols=15 Identities=40% Similarity=0.676 Sum_probs=11.9
Q ss_pred EEEEEECCCCHHHHH
Q ss_conf 235530477406799
Q gi|254780799|r 456 HLLIAGTTGSGKSVA 470 (806)
Q Consensus 456 HLLIAGtTGSGKSV~ 470 (806)
-++.-|.||||||=-
T Consensus 82 ti~ayGqtgSGKTyT 96 (369)
T 3cob_A 82 CIFAYGQTGSGKTFT 96 (369)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEECCCCCCCCCCEE
T ss_conf 277357778997267
No 440
>>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} (A:1-365)
Probab=48.37 E-value=15 Score=15.68 Aligned_cols=25 Identities=28% Similarity=0.402 Sum_probs=21.2
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 2355304774067999999999998
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLY 480 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLy 480 (806)
|+|..|-.|+||+-..+++--.+=+
T Consensus 65 ~iLl~GPpGtGKT~la~alA~~l~~ 89 (365)
T 2c9o_A 65 AVLLAGPPGTGKTALALAIAQELGS 89 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 7999899998899999999998489
No 441
>>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} (A:1-50,A:99-291)
Probab=48.36 E-value=15 Score=15.68 Aligned_cols=76 Identities=17% Similarity=0.072 Sum_probs=45.5
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHC---------------CHHHEEEEEECCCHHHHHHCCCCHHHHCCCCCCH
Q ss_conf 0020235530477406799999999999829---------------9578478885231001110277034312233430
Q gi|254780799|r 452 ARMPHLLIAGTTGSGKSVAINTMILSLLYRM---------------TPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNP 516 (806)
Q Consensus 452 akMPHLLIAGtTGSGKSV~iN~iI~SlLyk~---------------~P~evkliliDPK~vEls~Y~~iPHLl~pVvTd~ 516 (806)
.+.|...++|-|-.|||.-+|++.=+=.+.. +-+.|+.++- +|-+|--.+++| ++..
T Consensus 18 ~~~~~~~~~g~~n~gkstl~n~l~~~~~~~~~~AseG~GLG~~FLrHIert~vLih---VVD~s~~~dv~~-----~~~~ 89 (243)
T 1ni3_A 18 GNNLKTGIVGXPNVGKSTFFRAITKSVLGNPANASTGVGLGNAFLSHVRAVDAIYQ---VVRAFDDAEIIH-----VEGD 89 (243)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCCSSSSSCHHHHHHHTTCSEEEE---EEECCCTTCSSC-----CSSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEE---EEEECCCCCCCC-----CCCC
T ss_conf 77516989899999889999999788987757864578635899999873377999---986046788778-----8999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 4566899999999999999
Q gi|254780799|r 517 QKAVTVLKWLVCEMEERYQ 535 (806)
Q Consensus 517 ~kA~~aL~w~V~EMe~RY~ 535 (806)
........|...|++....
T Consensus 90 ~Dp~ed~~~i~~EL~~y~~ 108 (243)
T 1ni3_A 90 VDPIRDLSIIVDELLIKDA 108 (243)
T ss_dssp SCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
T ss_conf 5989999999999998139
No 442
>>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron transport protein (cytochrome); HET: HEM; 1.90A {Chlamydomonas reinhardtii} (A:)
Probab=48.34 E-value=14 Score=15.95 Aligned_cols=22 Identities=18% Similarity=0.158 Sum_probs=17.3
Q ss_pred EEECCCCHHHHHHHHHHHHHCC
Q ss_conf 8833489889999999997128
Q gi|254780799|r 692 IHGPFVSDIEVEKVVSHLKTQG 713 (806)
Q Consensus 692 ~~g~~v~~~ev~~v~~~~~~q~ 713 (806)
-.+.-+||+|+..|++|++++.
T Consensus 62 ~~~~~Ls~~e~~~i~aYi~~~~ 83 (90)
T 1cyi_A 62 AWADRLSEEEIQAVAEYVFKQA 83 (90)
T ss_dssp CCTTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHC
T ss_conf 8888989999999999999875
No 443
>>2c95_A Adenylate kinase 1; AP4A, nucleotide kinase, transferase, ATP-binding; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A (A:)
Probab=48.09 E-value=15 Score=15.83 Aligned_cols=23 Identities=22% Similarity=0.536 Sum_probs=17.1
Q ss_pred CCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 02023553047740679999999
Q gi|254780799|r 453 RMPHLLIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 453 kMPHLLIAGtTGSGKSV~iN~iI 475 (806)
|-+=.+|.|..|||||...+.+-
T Consensus 8 k~~~I~i~G~~GsGKsTla~~La 30 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
T ss_conf 78589998999998799999999
No 444
>>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} (A:1-271)
Probab=48.06 E-value=16 Score=15.64 Aligned_cols=40 Identities=30% Similarity=0.454 Sum_probs=25.5
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCH----HHEEEEEECCC
Q ss_conf 23553047740679999999999982995----78478885231
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTP----AQCRLIMIDPK 495 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P----~evkliliDPK 495 (806)
|+++..-|||||+-|---=|++-+.+..- .-++-+.+=|=
T Consensus 95 dii~~a~TGsGKTlay~lpil~~i~~~~~~~~~~~~~~lil~PT 138 (271)
T 2db3_A 95 DLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPT 138 (271)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSS
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC
T ss_conf 78998579996107579999999974433212477359999066
No 445
>>2g0t_A Conserved hypothetical protein; TM0796, structural genomics, PSI, protein structure initiative, joint center for structural genomics, JCSG; 2.67A {Thermotoga maritima} (A:160-350)
Probab=47.95 E-value=16 Score=15.63 Aligned_cols=74 Identities=14% Similarity=0.124 Sum_probs=41.6
Q ss_pred CCCCEEEEEEC-CCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 00202355304-77406799999999999829957847888523100111027703431223343045668999999999
Q gi|254780799|r 452 ARMPHLLIAGT-TGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEM 530 (806)
Q Consensus 452 akMPHLLIAGt-TGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~iPHLl~pVvTd~~kA~~aL~w~V~EM 530 (806)
-+.|-++|||| +||||..---++.-.|- ..=-.|++.=..|--+..+--.+.+ |-++..| ....++.+++.+.
T Consensus 8 ~~~p~i~i~Gt~sg~GKTt~t~~L~~al~--~rG~~v~~~k~Gpd~i~~~g~~~~~--lD~~~~d--~~~~~v~~~~~~~ 81 (191)
T 2g0t_A 8 KKIKVVGVFGTDCVVGKRTTAVQLWERAL--EKGIKAGFLATGQTGILIGADAGYV--IDAVPAD--FVSGVVEKAVLKL 81 (191)
T ss_dssp CCSEEEEEEESSSSSSHHHHHHHHHHHHH--HTTCCEEEEECSHHHHHTTCSEECC--GGGSBGG--GHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHH--HCCCCEEEEECCCEEEEECCCCCEE--CCCCHHH--HHHHHHHHHHHHH
T ss_conf 78748999557745138999999999999--7799725997077056532664545--4640355--5678999877424
Q ss_pred H
Q ss_conf 9
Q gi|254780799|r 531 E 531 (806)
Q Consensus 531 e 531 (806)
.
T Consensus 82 ~ 82 (191)
T 2g0t_A 82 E 82 (191)
T ss_dssp H
T ss_pred H
T ss_conf 3
No 446
>>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} (A:)
Probab=47.82 E-value=15 Score=15.69 Aligned_cols=48 Identities=15% Similarity=0.263 Sum_probs=33.3
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHH------HEEEEEECCCHHHHHHCC
Q ss_conf 235530477406799999999999829957------847888523100111027
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPA------QCRLIMIDPKMLELSVYD 503 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~------evkliliDPK~vEls~Y~ 503 (806)
.++|-|..|+|||--||.++-.-.-...+. ..+.+-++.+.+++.+++
T Consensus 8 Ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d 61 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWD 61 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEE
T ss_conf 999999899599999999974968865564300122100365202210014530
No 447
>>2fna_A Conserved hypothetical protein; 13814777, structural genomics, joint center for structural genomics, JCSG; HET: MSE ADP; 2.00A {Sulfolobus solfataricus P2} (A:1-208)
Probab=47.76 E-value=15 Score=15.80 Aligned_cols=151 Identities=15% Similarity=0.118 Sum_probs=65.2
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 23553047740679999999999982995784788852310011102770343122334304566899999999999999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEMEERYQ 535 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~iPHLl~pVvTd~~kA~~aL~w~V~EMe~RY~ 535 (806)
|+|+-|-+|.|||..++++.-- -+++++-++.-.+.-+.+. +..+-...+.+....|
T Consensus 32 ~iLL~GPpG~GKT~l~~~~a~~-------~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~----- 88 (208)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINE-------LNLPYIYLDLRKFEERNYI-----------SYKDFLLELQKEINKL----- 88 (208)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH-------HTCCEEEEEGGGGTTCSCC-----------CHHHHHHHHHHHHHHH-----
T ss_pred EEEEECCCCCCHHHHHHHHHHH-------CCCCEEEEEEEECCCCCCC-----------CHHHHHHHHHHHHHHH-----
T ss_conf 8999839999799999999998-------7997699997633544546-----------5999999999998877-----
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCCHHHHHH
Q ss_conf 9987089968999999998874478667754467765-454322233223234698687763446888873210058899
Q gi|254780799|r 536 KMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDR-KTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVARKDIESAV 614 (806)
Q Consensus 536 l~a~~~vRni~~yN~k~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~lp~ivviiDElaDlmm~~~~~ve~~i 614 (806)
+..+...+.-..+...-+...+.-. .+.+. ...............+---+++..|++-.+--.....+...+
T Consensus 89 --~~~~~~~~~~~de~~~~~~~~~~~~-----~~~~~~~~~~~l~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~ld~~l 161 (208)
T 2fna_A 89 --VKRLPSLLKALKNIQGIVIXGNEIK-----FNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPAL 161 (208)
T ss_dssp --HHHCTTHHHHTTTSTTEEECSSSEE-----EC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHHH
T ss_pred --HHHHHHHHHHHCCCCCCCCCCCCCC-----CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCHHHHHHHH
T ss_conf --7653321233101223344544432-----001234677899998888752144344566247765141268999999
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCC
Q ss_conf 999986641423799996577753
Q gi|254780799|r 615 QRLAQMARASGIHVIMATQRPSVD 638 (806)
Q Consensus 615 ~rlaq~ara~GiHli~aTqrPsvd 638 (806)
.|-.+.-+ -|++++...+.+.+
T Consensus 162 ~~~~~~~~--~i~~~~~~~~~~l~ 183 (208)
T 2fna_A 162 AYAYDNLK--RIKFIXSGSEXGLL 183 (208)
T ss_dssp HHHHHHCT--TEEEEEEESSHHHH
T ss_pred HHHHHHCC--CEEEEEECCCCCHH
T ss_conf 99987245--50023423653026
No 448
>>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} (A:)
Probab=47.75 E-value=14 Score=15.92 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=18.6
Q ss_pred EEEEEECCCCHHHHHHHHHHHH
Q ss_conf 2355304774067999999999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILS 477 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~S 477 (806)
-++|-|..|+|||-.||.++-.
T Consensus 22 ki~ivG~~~vGKTsli~~~~~~ 43 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999759
No 449
>>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} (A:277-489)
Probab=47.66 E-value=13 Score=16.15 Aligned_cols=42 Identities=17% Similarity=0.201 Sum_probs=25.6
Q ss_pred EEEEHHH-HHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCC
Q ss_conf 8776344-68888732100588999999866414237999965777
Q gi|254780799|r 592 IVVVIDE-MADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPS 636 (806)
Q Consensus 592 ivviiDE-laDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPs 636 (806)
=|++.|| .+-|=+.+..++.+.|.+|+|+- |+-+|+.|....
T Consensus 145 ~ililDEPts~LD~~~~~~i~~~i~~l~~~~---~~tii~vsHd~~ 187 (213)
T 1yqt_A 145 DIYLLDEPSAYLDVEQRLAVSRAIRHLXEKN---EKTALVVEHDVL 187 (213)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHHHHHH---TCEEEEECSCHH
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHHC---CCEEEEEECCHH
T ss_conf 8999979986779999999999999999867---999999958899
No 450
>>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* (A:27-244)
Probab=47.56 E-value=8.7 Score=17.54 Aligned_cols=38 Identities=11% Similarity=0.179 Sum_probs=20.5
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCH
Q ss_conf 3553047740679999999999982995784788852310
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKM 496 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~ 496 (806)
+++-|-.|||||---..+.--+--+.. .+..+-.|-.+
T Consensus 12 iil~GlpGsGKST~A~~L~~~~~~~~~--~~~~~~~D~~r 49 (218)
T 2axn_A 12 IVMVGLPARGKTYISKKLTRYLNWIGV--PTKVFNVGEYR 49 (218)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTC--CEEEEEHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCC--CEEEECCHHHH
T ss_conf 999899999889999999999722798--81682344888
No 451
>>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} (A:1-51,A:101-303)
Probab=47.45 E-value=13 Score=16.25 Aligned_cols=93 Identities=19% Similarity=0.225 Sum_probs=55.7
Q ss_pred CCCCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCC-------------HHHEEEEEECCCHHHHHHCCCC
Q ss_conf 456666667854100202355304774067999999999998299-------------5784788852310011102770
Q gi|254780799|r 439 GKSIEGKPIIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMT-------------PAQCRLIMIDPKMLELSVYDGI 505 (806)
Q Consensus 439 GKdI~G~pvv~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~-------------P~evkliliDPK~vEls~Y~~i 505 (806)
++--.+......-...|..-++|-|.+|||.-+|++--+=-+-.. =+.|++++- +|-++-+.+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~v~~~g~~n~gkstl~n~l~~~~~~~~~seGkGLG~~FLrhIer~~~Llh---VVD~s~~~~~ 83 (254)
T 2ohf_A 7 GDGIKPPPIIGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENHNGQGLGNAFLSHISACDGIFH---LTRAFEDDDI 83 (254)
T ss_dssp ---------CCCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCHHHHHHHTSSSEEE---EEEC------
T ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH---HHHCCCCCCC
T ss_conf 7777776421566785389998999998999999997889753484567539999999974406664---3420477776
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3431223343045668999999999999999987
Q gi|254780799|r 506 PNLLTPVVTNPQKAVTVLKWLVCEMEERYQKMSK 539 (806)
Q Consensus 506 PHLl~pVvTd~~kA~~aL~w~V~EMe~RY~l~a~ 539 (806)
||.- ...+......|...|++....-+.+
T Consensus 84 ~~~~-----~~~DP~~d~~~I~~EL~~~~~~l~e 112 (254)
T 2ohf_A 84 THVE-----GSVDPIRDIEIIHEELQLKDEEMIG 112 (254)
T ss_dssp -----------CTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCC-----CCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6678-----9859899888765466654566640
No 452
>>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A (A:1-168,A:240-278)
Probab=47.32 E-value=13 Score=16.17 Aligned_cols=27 Identities=19% Similarity=0.389 Sum_probs=21.7
Q ss_pred ECCCCCEEEEEECCCCHHHHHHHHHHH
Q ss_conf 410020235530477406799999999
Q gi|254780799|r 450 DLARMPHLLIAGTTGSGKSVAINTMIL 476 (806)
Q Consensus 450 DLakMPHLLIAGtTGSGKSV~iN~iI~ 476 (806)
+.++-.+.-|.|-.+||||--+|.++.
T Consensus 9 ~~~~~rnIaIvG~~nsGKSTLl~~Ll~ 35 (207)
T 2h5e_A 9 EVAKRRTFAIISHPDAGKTTITEKVLL 35 (207)
T ss_dssp HHHTEEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 875777899996899899999999998
No 453
>>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus} (A:1-122)
Probab=47.17 E-value=13 Score=16.35 Aligned_cols=57 Identities=12% Similarity=0.295 Sum_probs=43.2
Q ss_pred HHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHC-CCCCEEEECHHH
Q ss_conf 999999659850001422200117789999999997798680227-887267317125
Q gi|254780799|r 746 AVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPASS-TGKREILISSME 802 (806)
Q Consensus 746 a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~~g-~~~r~vl~~~~~ 802 (806)
.+=..+..+..+.+-|-+++.+-=..+.|+++.||++|+|--... .-.|.+++.-.+
T Consensus 41 ~iL~~i~~~~~t~~ela~~~~~~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~ 98 (122)
T 3f3x_A 41 SILKATSEEPRSMVYLANRYFVTQSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEITP 98 (122)
T ss_dssp HHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECH
T ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCHHCCCCH
T ss_conf 9999999299199999999797886899999999967880131355455301213389
No 454
>>1ycc_A Cytochrome C; electron transport (cytochrome); HET: M3L HEM; 1.23A {Saccharomyces cerevisiae} (A:)
Probab=47.12 E-value=15 Score=15.84 Aligned_cols=20 Identities=15% Similarity=0.242 Sum_probs=13.4
Q ss_pred CCCCHHHHHHHHHHHHHCCC
Q ss_conf 34898899999999971289
Q gi|254780799|r 695 PFVSDIEVEKVVSHLKTQGE 714 (806)
Q Consensus 695 ~~v~~~ev~~v~~~~~~q~~ 714 (806)
.-.||+||..|+.|++++.+
T Consensus 89 ~~Ls~~ei~~i~aYL~sl~~ 108 (108)
T 1ycc_A 89 GLKKEKDRNDLITYLKKACE 108 (108)
T ss_dssp CCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHHCC
T ss_conf 98999999999999998639
No 455
>>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* (A:)
Probab=47.09 E-value=15 Score=15.79 Aligned_cols=44 Identities=18% Similarity=0.217 Sum_probs=27.3
Q ss_pred EEEEEECCCCHHHHHHHHHHHHH---HHHCC--HHHEEEEEECCCHHHH
Q ss_conf 23553047740679999999999---98299--5784788852310011
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSL---LYRMT--PAQCRLIMIDPKMLEL 499 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~Sl---Lyk~~--P~evkliliDPK~vEl 499 (806)
.+++.|-+|+|||-.+|.+...= -|..+ .+.-+-.+.+.+.+..
T Consensus 8 ki~iiG~~~vGKSsll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNV 56 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEHHHCCEECCCCCCEE
T ss_conf 9999995993999999999829998764663211110210002568658
No 456
>>2q83_A YTAA protein; 2635576, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2, transferase; HET: ADN CIT UNL; 2.50A {Bacillus subtilis} (A:1-117)
Probab=46.99 E-value=9.7 Score=17.21 Aligned_cols=78 Identities=13% Similarity=0.232 Sum_probs=58.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCEE-EEEEEECCEEEEEEEEECCCCCHHHHHHHHH-------HHHHHHHHCCCCC-
Q ss_conf 563256654578999999742486328-9984104424444432147863999997889-------9998863001210-
Q gi|254780799|r 325 MTFSPKVMQNNACTLKSVLSDFGIQGE-IVNVRPGPVITLYELEPAPGIKSSRIIGLSD-------DIARSMSAISARV- 395 (806)
Q Consensus 325 ~~~s~eeL~~nA~lLE~tL~dFGVe~~-Vv~v~pGPVVTrYEi~PApGVKvSKI~nLad-------DIA~aLsa~svRI- 395 (806)
...+.+......++++..|..||++.. +..+..|..=.-|.++=..|..+=|+.+-+. .+-..|+..++.|
T Consensus 9 ~~~~~~~~~~~~~~~~~vl~~y~l~~~~i~~l~~g~~n~v~~i~t~~g~yvLK~~~~~~~~l~~e~~~l~~L~~~G~~vp 88 (117)
T 2q83_A 9 LPLSAEDAKKLTELAENVLQGWDVQAEKIDVIQGNQXALVWKVHTDSGAVCLKRIHRPEKKALFSIFAQDYLAKKGXNVP 88 (117)
T ss_dssp --CCSHHHHHHHHHHHHHGGGSCCCCCEEEECC----CEEEEEEETTEEEEEEEECSCHHHHHHHHHHHHHHHHHTCSSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCHHEEEECCCCCCCCEEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 83880369999999999998579983238862588644559999899888999958987889999999999996699998
Q ss_pred CCCCCCC
Q ss_conf 0038861
Q gi|254780799|r 396 AVIPRRN 402 (806)
Q Consensus 396 apIPGK~ 402 (806)
.|||-|+
T Consensus 89 ~~i~t~~ 95 (117)
T 2q83_A 89 GILPNKK 95 (117)
T ss_dssp CBCCCTT
T ss_pred EEECCCC
T ss_conf 6601368
No 457
>>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} (B:1-233)
Probab=46.94 E-value=9.7 Score=17.19 Aligned_cols=30 Identities=20% Similarity=0.253 Sum_probs=20.6
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHC
Q ss_conf 020235530477406799999999999829
Q gi|254780799|r 453 RMPHLLIAGTTGSGKSVAINTMILSLLYRM 482 (806)
Q Consensus 453 kMPHLLIAGtTGSGKSV~iN~iI~SlLyk~ 482 (806)
+++=++|-|..|||||---..+--.+=+++
T Consensus 51 ~~~~I~i~G~~GsGKTTia~~La~~l~~~~ 80 (233)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHG 80 (233)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 877999989999989999999999966036
No 458
>>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* (C:)
Probab=46.79 E-value=16 Score=15.51 Aligned_cols=41 Identities=20% Similarity=0.314 Sum_probs=26.6
Q ss_pred CEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEE
Q ss_conf 6678541002023553047740679999999999982995784788
Q gi|254780799|r 445 KPIIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLI 490 (806)
Q Consensus 445 ~pvv~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkli 490 (806)
+++-.++.+===.-+.|.-|||||-.+|.| ....|++=...
T Consensus 17 ~~is~~i~~Gei~~liGpNGaGKSTll~~i-----~G~~~~~G~I~ 57 (249)
T 2qi9_C 17 GPLSGEVRAGEILHLVGPNGAGKSTLLARX-----AGXTSGKGSIQ 57 (249)
T ss_dssp EEEEEEEETTCEEEEECCTTSSHHHHHHHH-----TTSSCCEEEEE
T ss_pred CCEEEEECCCCEEEEECCCCCCHHHHHHHH-----HCCCCCCEEEE
T ss_conf 688999948989999999998199999999-----48879956999
No 459
>>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} (A:)
Probab=46.68 E-value=16 Score=15.49 Aligned_cols=45 Identities=13% Similarity=0.275 Sum_probs=31.0
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHC---CHHHEEEEEECCC
Q ss_conf 10020235530477406799999999999829---9578478885231
Q gi|254780799|r 451 LARMPHLLIAGTTGSGKSVAINTMILSLLYRM---TPAQCRLIMIDPK 495 (806)
Q Consensus 451 LakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~---~P~evkliliDPK 495 (806)
...+||+|.-|--|.||+-...+|--.+-... .-..+..-.+|..
T Consensus 40 ~~~~~~iLl~GPpGtGKTtla~ala~~l~~~~~~~~~~~~~~~~~~~~ 87 (187)
T 2p65_A 40 RRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLS 87 (187)
T ss_dssp SSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHH
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHCCCEEEEECHH
T ss_conf 557778068647640147999999999982899977779689994278
No 460
>>3cuo_A Uncharacterized HTH-type transcriptional regulator YGAV; DNA-binding transcriptional regulator, structural genomics, PSI, MCSG; 2.00A {Escherichia coli K12} (A:10-99)
Probab=46.54 E-value=16 Score=15.48 Aligned_cols=61 Identities=11% Similarity=0.137 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCCCCCEEEECH
Q ss_conf 7038999999996598500014222001177899999999977986802278872673171
Q gi|254780799|r 740 DDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPASSTGKREILISS 800 (806)
Q Consensus 740 d~l~~~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~~g~~~r~vl~~~ 800 (806)
||.=-+-+..+.+.+..+++-|.+.|.|..+-+.+-+..|++.|+|-...-.+.+-.-+.+
T Consensus 14 ~~~R~~Il~~L~~~~~~~~~ela~~l~is~~tvs~HL~~L~~~Glv~~~~~g~~~~y~l~~ 74 (90)
T 3cuo_A 14 HPKRLLILCMLSGSPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRDAQRILYSIKN 74 (90)
T ss_dssp SHHHHHHHHHHTTCCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSCEEEEECC
T ss_pred CHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCEEEEEECH
T ss_conf 9999999999976999419999999892987899999999988951799888999999886
No 461
>>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcriptional regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A (A:1-119)
Probab=46.53 E-value=7 Score=18.28 Aligned_cols=58 Identities=17% Similarity=0.255 Sum_probs=46.7
Q ss_pred HHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHC-CCCCEEEECHHH
Q ss_conf 9999999659850001422200117789999999997798680227-887267317125
Q gi|254780799|r 745 QAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPASS-TGKREILISSME 802 (806)
Q Consensus 745 ~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~~g-~~~r~vl~~~~~ 802 (806)
.++.++.+.+..+.+-|-.++.+==.-+.|+++.||++|.|--... .-.|.+.+...+
T Consensus 40 ~iL~~l~~~~~~t~~~la~~~~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~i~lT~ 98 (119)
T 3hsr_A 40 IVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTE 98 (119)
T ss_dssp HHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECH
T ss_conf 99999987799899999999896886899999999817956985437898757888898
No 462
>>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, alternative splicing, coiled coil, cytoplasm, nucleus, protein transport; 2.61A {Homo sapiens} PDB: 2zme_A (A:152-234)
Probab=46.42 E-value=17 Score=15.47 Aligned_cols=47 Identities=15% Similarity=0.227 Sum_probs=38.9
Q ss_pred HHHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHC
Q ss_conf 99999999659850001422200117789999999997798680227
Q gi|254780799|r 744 KQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPASS 790 (806)
Q Consensus 744 ~~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~~g 790 (806)
..++++.-..|-+|.|+|+++|+=-=.||-..+|+|=.+|++==-+.
T Consensus 6 t~vL~~Ae~~G~Vtvs~L~~~lgW~~~Ra~~aLe~Li~eGlaWiD~Q 52 (83)
T 3cuq_A 6 TVVLQLAEKNGYVTVSEIKASLKWETERARQVLEHLLKEGLAWLDLQ 52 (83)
T ss_dssp HHHHHHHTTTSEECHHHHHHHHTCCHHHHHHHHHHHHHHTSCEEESS
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECC
T ss_conf 99999998469927999999969799999999999996899899789
No 463
>>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} (A:1-177)
Probab=46.38 E-value=14 Score=16.01 Aligned_cols=37 Identities=24% Similarity=0.420 Sum_probs=28.2
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCH-HHEEEEEECCCHH
Q ss_conf 23553047740679999999999982995-7847888523100
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTP-AQCRLIMIDPKML 497 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P-~evkliliDPK~v 497 (806)
|+||-|-+|+||+.. .-.++..++ .+=.||.||.-..
T Consensus 27 pvlI~Ge~GtGK~~l-----A~~iH~~~~r~~~pfi~i~c~~~ 64 (177)
T 1ojl_A 27 TVLIHGDSGTGKELV-----ARALHACSARSDRPLVTLNCAAL 64 (177)
T ss_dssp CEEEESCTTSCHHHH-----HHHHHHHSSCSSSCCCEEECSSC
T ss_pred CEEEECCCCCCHHHH-----HHHHHHHCCCCCCCEEEEECCCC
T ss_conf 589989898679999-----99999818767998588646779
No 464
>>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} (A:1-115,A:163-216)
Probab=46.21 E-value=9.8 Score=17.17 Aligned_cols=17 Identities=24% Similarity=0.610 Sum_probs=13.1
Q ss_pred EEEEEECCCCHHHHHHH
Q ss_conf 23553047740679999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAIN 472 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN 472 (806)
+++|.|.-|||||---.
T Consensus 2 ~I~i~G~pGsGKSTlak 18 (169)
T 3fb4_A 2 NIVLMGLPGAGKGTQAE 18 (169)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
T ss_conf 79998999998799999
No 465
>>2iv2_X Formate dehydrogenase H; oxidoreductase, 4Fe-4S, anaerobic, complete proteome, direct protein sequencing, Fe4S4, iron, iron sulfur cluster; HET: 2MD MGD; 2.27A {Escherichia coli} (X:152-335,X:532-565)
Probab=46.17 E-value=14 Score=15.97 Aligned_cols=85 Identities=11% Similarity=0.185 Sum_probs=61.4
Q ss_pred CCCCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCCHHHHCCCCCCHHH
Q ss_conf 45666666785410020235530477406799999999999829957847888523100111027703431223343045
Q gi|254780799|r 439 GKSIEGKPIIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQK 518 (806)
Q Consensus 439 GKdI~G~pvv~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~iPHLl~pVvTd~~k 518 (806)
|.+-.+.+ +-|+...-++|+-|+-- .--|....+.+.+++-...|+|.|||.+-+.+-+-+. ||-..-=||.--
T Consensus 2 G~g~~~~~-~~Di~nad~IL~~G~N~----~~s~p~~~~~l~~ar~~GakvVvIdPr~t~ta~~AD~-~l~vrPGtD~al 75 (218)
T 2iv2_X 2 GNGAMSNA-INEIDNTDLVFVFGYNP----ADSHPIVANHVINAKRNGAKIIVCDPRKIETARIADM-HIALKNGSNIAL 75 (218)
T ss_dssp SCCSCSSC-GGGGGGCSEEEEESCCH----HHHCHHHHHHHHHHHHTTCEEEEECSSCCHHHHTCSE-EECCCTTCHHHH
T ss_pred CCCCCCCC-CCCCCCCCEEEECCCCC----HHHCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHH-HCCCCCCCHHHH
T ss_conf 57877886-32110242468678180----4411126677789986799899957642057888655-135566868999
Q ss_pred HHHHHHHHHHH
Q ss_conf 66899999999
Q gi|254780799|r 519 AVTVLKWLVCE 529 (806)
Q Consensus 519 A~~aL~w~V~E 529 (806)
+..-++|++.|
T Consensus 76 ~~al~~~ii~~ 86 (218)
T 2iv2_X 76 LNAMGHVIIEE 86 (218)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHC
T ss_conf 97656666766
No 466
>>3hdt_A Putative kinase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940} (A:)
Probab=46.14 E-value=17 Score=15.44 Aligned_cols=25 Identities=20% Similarity=0.145 Sum_probs=18.6
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 0235530477406799999999999
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTMILSLL 479 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~iI~SlL 479 (806)
+-+.|.|..|||||.-.+.+--.|=
T Consensus 15 ~~I~i~G~~GsGKSTla~~L~~~l~ 39 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELG 39 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHC
T ss_conf 7998458998997999999999919
No 467
>>1j2r_A Hypothetical isochorismatase family protein YECD; parallel beta-sheet 3-2-1-4-5-6, alpha-beta-alpha motif, tetramere, structural genomics; 1.30A {Escherichia coli} (A:)
Probab=45.99 E-value=17 Score=15.42 Aligned_cols=50 Identities=26% Similarity=0.260 Sum_probs=38.1
Q ss_pred EEEEEHHHHHHHHH-----HCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCC
Q ss_conf 68776344688887-----321005889999998664142379999657775355
Q gi|254780799|r 591 YIVVVIDEMADLMM-----VARKDIESAVQRLAQMARASGIHVIMATQRPSVDVI 640 (806)
Q Consensus 591 ~ivviiDElaDlmm-----~~~~~ve~~i~rlaq~ara~GiHli~aTqrPsvdvi 640 (806)
...+|||==.|++- -...++-..|.||.+.||+.|++.|..++.++-+-.
T Consensus 20 taLliiD~Q~~f~~~~~~~~~~~~~~~~i~~l~~~ar~~~~~vi~~~~~~~~~~~ 74 (199)
T 1j2r_A 20 TALVVIDLQEGILPFAGGPHTADEVVNRAGKLAAKFRASGQPVFLVRVGWSADYA 74 (199)
T ss_dssp EEEEEECCSTTTGGGCCBSSCHHHHHHHHHHHHHHHHHTTCCEEEEEECCCTTCT
T ss_pred EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCH
T ss_conf 6999997826755887652269999999999999999849968988650288852
No 468
>>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} (B:104-292)
Probab=45.86 E-value=10 Score=17.09 Aligned_cols=15 Identities=53% Similarity=0.851 Sum_probs=12.5
Q ss_pred EEEEEECCCCHHHHH
Q ss_conf 235530477406799
Q gi|254780799|r 456 HLLIAGTTGSGKSVA 470 (806)
Q Consensus 456 HLLIAGtTGSGKSV~ 470 (806)
.|..-|..||||||-
T Consensus 51 flflhgr~gsgksvi 65 (189)
T 2a5y_B 51 FLFLHGRAGSGKSVI 65 (189)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
T ss_conf 899975886668999
No 469
>>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} (A:1-56)
Probab=45.64 E-value=12 Score=16.55 Aligned_cols=49 Identities=18% Similarity=0.225 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHH
Q ss_conf 7038999999996598500014222001177899999999977986802
Q gi|254780799|r 740 DDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPA 788 (806)
Q Consensus 740 d~l~~~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~ 788 (806)
++.=.+||+++.+.+-.|++-+=|.|.|+.|---+.+.+..+.|-..|+
T Consensus 8 ~EFK~~aV~l~~~~~g~sv~~vA~~~gi~~~tl~~Wvk~~~~~~~~~pa 56 (56)
T 2jn6_A 8 EEFKRDAVALYENSDGASLQQIANDLGINRVTLKNWIIKYGSNHNVQGT 56 (56)
T ss_dssp HHHHHHHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHHHHHCCCSTTCSC
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCC
T ss_conf 9999999999998389839999999699821303999997213456788
No 470
>>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} (A:)
Probab=45.61 E-value=14 Score=16.07 Aligned_cols=14 Identities=36% Similarity=0.487 Sum_probs=5.2
Q ss_pred EEECCCCHHHHHHH
Q ss_conf 53047740679999
Q gi|254780799|r 459 IAGTTGSGKSVAIN 472 (806)
Q Consensus 459 IAGtTGSGKSV~iN 472 (806)
|+|..|||||--.+
T Consensus 12 ieG~~GsGKTTl~~ 25 (334)
T 1p6x_A 12 LDGVYGIGKSTTGR 25 (334)
T ss_dssp EECSTTSSHHHHHH
T ss_pred EECCCCCCHHHHHH
T ss_conf 98887788999999
No 471
>>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} (A:1-88)
Probab=45.61 E-value=17 Score=15.38 Aligned_cols=56 Identities=16% Similarity=0.209 Sum_probs=44.1
Q ss_pred HHHHHHHHC-CCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCC-CCCEEEECH
Q ss_conf 999999965-98500014222001177899999999977986802278-872673171
Q gi|254780799|r 745 QAVDIVLRD-NKASISYIQRRLGIGYNRAASIIENMEEKGVIGPASST-GKREILISS 800 (806)
Q Consensus 745 ~a~~~v~~~-~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~~g~-~~r~vl~~~ 800 (806)
..+..+-.. +.-+.+-|=+++.+-=.-..|+++.||++|.|--..+. -.|.+++.-
T Consensus 30 ~vL~~l~~~~g~~t~~~La~~~~~~~~~vs~~i~~Le~~G~I~r~~~~~D~R~~~ilT 87 (88)
T 1ku9_A 30 AVYAILYLSDKPLTISDIXEELKISKGNVSXSLKKLEELGFVRKVWIKGERKNYYEAV 87 (88)
T ss_dssp HHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCSSCEEEEC
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEE
T ss_conf 9999999769896999999784866514999999999889989852898887468777
No 472
>>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} (A:16-231,A:349-398)
Probab=45.54 E-value=9.7 Score=17.19 Aligned_cols=15 Identities=27% Similarity=0.383 Sum_probs=11.0
Q ss_pred EEEEEECCCCHHHHH
Q ss_conf 235530477406799
Q gi|254780799|r 456 HLLIAGTTGSGKSVA 470 (806)
Q Consensus 456 HLLIAGtTGSGKSV~ 470 (806)
..++...||||||.+
T Consensus 83 g~iv~~~TGsGKTLv 97 (266)
T 1tf5_A 83 GNIAEMKTGEGKTLT 97 (266)
T ss_dssp TSEEECCTTSCHHHH
T ss_pred CCEEEEECCCCHHHH
T ss_conf 965776379968999
No 473
>>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A (A:)
Probab=45.48 E-value=15 Score=15.84 Aligned_cols=48 Identities=17% Similarity=0.222 Sum_probs=36.1
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCH----HHEEEEEECCCHHHHHHCC
Q ss_conf 23553047740679999999999982995----7847888523100111027
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTP----AQCRLIMIDPKMLELSVYD 503 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P----~evkliliDPK~vEls~Y~ 503 (806)
.++|-|..|+|||-.|+.++..=--...| ...+-+.++.|.+.+.+++
T Consensus 9 ki~iiG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d 60 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIRE 60 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEEEEEEEETTEEEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCEEEEEEEEE
T ss_conf 9999999997899999999709788777853314566651386799999861
No 474
>>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} (A:164-233)
Probab=45.39 E-value=14 Score=15.94 Aligned_cols=45 Identities=22% Similarity=0.275 Sum_probs=38.1
Q ss_pred HHHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHH
Q ss_conf 999999996598500014222001177899999999977986802
Q gi|254780799|r 744 KQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPA 788 (806)
Q Consensus 744 ~~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~ 788 (806)
..+.++.-..|.+|.|+|+++|+=-=.||-..+|.|=.+|++==-
T Consensus 7 t~vL~~a~~~G~Vt~s~L~~~l~W~~~Ra~~aLe~li~eGl~WvD 51 (70)
T 1u5t_A 7 TKILEICSILGYSSISLLKANLGWEAVRSKSALDEMVANGLLWID 51 (70)
T ss_dssp HHHHHTTTTTSCCBHHHHHHHHCCCSHHHHHHHHHHHHTTSSEEE
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 999999986699189999988796999999999999977998997
No 475
>>2o8b_A DNA mismatch repair protein MSH2; DNA damage response, somatic hypermutation, protein-DNA complex, DNA mispair, cancer, ABC transporter ATPase; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 2o8e_A* (A:289-323,A:618-823)
Probab=45.38 E-value=17 Score=15.35 Aligned_cols=149 Identities=15% Similarity=0.136 Sum_probs=73.5
Q ss_pred HHHCCCCCH-HHCCCCCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCC
Q ss_conf 430221000-2104566666678541002023553047740679999999999982995784788852310011102770
Q gi|254780799|r 427 FEKNQCDLA-INLGKSIEGKPIIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGI 505 (806)
Q Consensus 427 f~~s~~~L~-iaLGKdI~G~pvv~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~i 505 (806)
+.+..|||- ...+++.--+.+..+=.+--=+||-|.-+||||+++-+|-+..++-..= .-|=-+.-++++|+.|
T Consensus 52 i~~~rHPlle~~~~~~~VpNdi~l~~~~~~i~iITGpN~sGKSt~LksI~~i~iLAqiG-----~~VPA~~a~i~~~d~i 126 (241)
T 2o8b_A 52 LKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIG-----CFVPCESAEVSIVDCI 126 (241)
T ss_dssp EEEECCTTTTTSTTCCCCCEEEEEETTSSCEEEEECSTTSSHHHHHHHHHHHHHHHHTT-----CCBSSSEEEEECCSEE
T ss_pred EECCCCCCEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHC-----CCEEHHHCCCCCCCEE
T ss_conf 31145532111333455687501244443126886677631667999999999999829-----5366364276677779
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 34312233430456689999999999999999870899689999999988744786677544677654543222332232
Q gi|254780799|r 506 PNLLTPVVTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFD 585 (806)
Q Consensus 506 PHLl~pVvTd~~kA~~aL~w~V~EMe~RY~l~a~~~vRni~~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (806)
- + -+-+...-...+..--.||.+==.++..++
T Consensus 127 ~---t-~~~~~ds~~~~~SsF~~El~~i~~il~~~t-------------------------------------------- 158 (241)
T 2o8b_A 127 L---A-RVGAGDSQLKGVSTFMAEMLETASILRSAT-------------------------------------------- 158 (241)
T ss_dssp E---E-EEC---------CHHHHHHHHHHHHHTTCC--------------------------------------------
T ss_pred E---E-EEECCCCCCCCCCHHHHHHHHHHHHHHHCC--------------------------------------------
T ss_conf 9---9-972487655677589999999999998589--------------------------------------------
Q ss_pred CCCCCEEEEEHHHHHHHHHHCCCHHHH----HHHHHHHHHHHCCEEEEEEECCCCC
Q ss_conf 346986877634468888732100588----9999998664142379999657775
Q gi|254780799|r 586 FQHMPYIVVVIDEMADLMMVARKDIES----AVQRLAQMARASGIHVIMATQRPSV 637 (806)
Q Consensus 586 ~~~lp~ivviiDElaDlmm~~~~~ve~----~i~rlaq~ara~GiHli~aTqrPsv 637 (806)
+.-.|+|||+.- |-+-++ +.+=|-+.+.-.+-+.++||.-...
T Consensus 159 ----~~SLVLiDElg~-----GT~~~eg~ala~aile~L~~~~~~~~i~aTH~~eL 205 (241)
T 2o8b_A 159 ----KDSLIIIDELGR-----GTSTYDGFGLAWAISEYIATKIGAFCMFATHFHEL 205 (241)
T ss_dssp ----TTSEEEEESCCC-----SSCHHHHHHHHHHHHHHHHHTTCCEEEEECCCTTS
T ss_pred ----CCEEEEEECCCC-----CCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHH
T ss_conf ----982999822889-----99906889999999999986569879998861889
No 476
>>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, ATP-binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus VF5} (A:)
Probab=45.26 E-value=17 Score=15.34 Aligned_cols=27 Identities=22% Similarity=0.292 Sum_probs=19.6
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 355304774067999999999998299
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMILSLLYRMT 483 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~SlLyk~~ 483 (806)
..|.|..|||||--.+.+--.+=++.-
T Consensus 3 I~i~G~~GsGKSTla~~L~~~l~~~~~ 29 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGY 29 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 999899889999999999999987799
No 477
>>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} (A:)
Probab=45.18 E-value=17 Score=15.46 Aligned_cols=19 Identities=32% Similarity=0.560 Sum_probs=13.0
Q ss_pred EEEEECCCCHHHHHHHHHH
Q ss_conf 3553047740679999999
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI 475 (806)
..|.|..|||||--.+.+-
T Consensus 8 I~i~G~~GsGKsTla~~L~ 26 (216)
T 3tmk_A 8 ILIEGLDRTGKTTQCNILY 26 (216)
T ss_dssp EEEEECSSSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9998998887999999999
No 478
>>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} (A:1-138)
Probab=45.00 E-value=17 Score=15.31 Aligned_cols=27 Identities=33% Similarity=0.628 Sum_probs=20.2
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHC
Q ss_conf 235530477406799999999999829
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRM 482 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~ 482 (806)
.-+|.|..|+|||-.+.+|-.-+-.+.
T Consensus 25 l~vi~G~Ng~GKStil~Ai~~~l~~~~ 51 (138)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGLYWPL 51 (138)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHCSS
T ss_pred CEEEECCCCCCCHHHHHHHHHHHCCCC
T ss_conf 299998898880069999999966977
No 479
>>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} (A:)
Probab=44.91 E-value=17 Score=15.41 Aligned_cols=151 Identities=16% Similarity=0.218 Sum_probs=69.4
Q ss_pred CEEEEECC---CCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHH-HHHHC----CCCHHHHC--CCCC
Q ss_conf 66785410---020235530477406799999999999829957847888523100-11102----77034312--2334
Q gi|254780799|r 445 KPIIADLA---RMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKML-ELSVY----DGIPNLLT--PVVT 514 (806)
Q Consensus 445 ~pvv~DLa---kMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~v-Els~Y----~~iPHLl~--pVvT 514 (806)
+..+-|+. +=-...+=|..|||||-.+++| .-..|..=+. .+|.+-+ ++..| .++|.... -.+.
T Consensus 18 ~~~l~~isl~i~Ge~i~iiGpNGaGKSTLlk~i-----~Gl~p~sG~i-~i~g~~i~~~~~~~~~~~~~~~~~~~~~t~~ 91 (263)
T 2pjz_A 18 RFSLENINLEVNGEKVIILGPNGSGKTTLLRAI-----SGLLPYSGNI-FINGMEVRKIRNYIRYSTNLPEAYEIGVTVN 91 (263)
T ss_dssp EEEEEEEEEEECSSEEEEECCTTSSHHHHHHHH-----TTSSCCEEEE-EETTEEGGGCSCCTTEEECCGGGSCTTSBHH
T ss_pred CEEEEEEEEEECCEEEEEECCCCCHHHHHHHHH-----HCCCCCCCCE-EECCEEHHHHHHHHHHHCCCCCCCCCCCCHH
T ss_conf 157851448986989999999998299999999-----6488888738-9999996785677544405774255355799
Q ss_pred CHHHHHHHH----HHHHHHHHHHHHHHHH---CCCCCHHHHH-HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 304566899----9999999999999987---0899689999-9999887447866775446776545432223322323
Q gi|254780799|r 515 NPQKAVTVL----KWLVCEMEERYQKMSK---IGVRNIDGFN-LKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDF 586 (806)
Q Consensus 515 d~~kA~~aL----~w~V~EMe~RY~l~a~---~~vRni~~yN-~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (806)
|--....-+ +..+.||-+...+..+ -.+..+.+=. +|+.-|..--
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~aL~--------------------------- 144 (263)
T 2pjz_A 92 DIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALA--------------------------- 144 (263)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHH---------------------------
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHH---------------------------
T ss_conf 99999987156548999999998078676764882318988999999999986---------------------------
Q ss_pred CCCCEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCC
Q ss_conf 46986877634468888732100588999999866414237999965777
Q gi|254780799|r 587 QHMPYIVVVIDEMADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPS 636 (806)
Q Consensus 587 ~~lp~ivviiDElaDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPs 636 (806)
.=|- +++.||= +++=|. .....|.+.-+--+-..|+.|....
T Consensus 145 -~~p~-illLDEP-----t~~LD~-~~~~~l~~~l~~~~~~~iivtH~~~ 186 (263)
T 2pjz_A 145 -SQPE-IVGLDEP-----FENVDA-ARRHVISRYIKEYGKEGILVTHELD 186 (263)
T ss_dssp -TCCS-EEEEECT-----TTTCCH-HHHHHHHHHHHHSCSEEEEEESCGG
T ss_pred -HCCC-EEEECCC-----CCCCCH-HHHHHHHHHHHHHCCCEEEECCCHH
T ss_conf -2998-9994587-----410199-9999999999980992999952799
No 480
>>2r44_A Uncharacterized protein; YP_676785.1, putative ATPase, structural genomics, joint center for structural genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} (A:1-226)
Probab=44.83 E-value=13 Score=16.32 Aligned_cols=62 Identities=18% Similarity=0.146 Sum_probs=34.9
Q ss_pred CCCCEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHH---------CCEEEEEEECCCCCCCCCHHHHHCCCCEE
Q ss_conf 4698687763446888873210058899999986641---------42379999657775355435541102515
Q gi|254780799|r 587 QHMPYIVVVIDEMADLMMVARKDIESAVQRLAQMARA---------SGIHVIMATQRPSVDVITGTIKANFPTRI 652 (806)
Q Consensus 587 ~~lp~ivviiDElaDlmm~~~~~ve~~i~rlaq~ara---------~GiHli~aTqrPsvdvitg~ikan~p~ri 652 (806)
.+++.=|+++||+--+ ..++...+-.+-+-.+- -.-=.|+||.-|..+.-|.-+..-+-.|.
T Consensus 106 ~~~~~~il~lDEi~~~----~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~t~n~~~~~~~~~l~~al~~Rf 176 (226)
T 2r44_A 106 GPVFSNFILADEVNRS----PAKVQSALLECXQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRF 176 (226)
T ss_dssp CTTCSSEEEEETGGGS----CHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTS
T ss_pred CCCCCCEECCCCCCCC----CHHHHHHHHHHHCCCEEEEECCEEECCCCCEECCCCCCCCCCCCCCCCHHHCCCC
T ss_conf 3123221105852334----3147777766402101333025076020000101478754235667843324653
No 481
>>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} (A:)
Probab=44.66 E-value=10 Score=16.97 Aligned_cols=84 Identities=10% Similarity=0.128 Sum_probs=38.6
Q ss_pred HHHHHCCEEEEEEECCCCCCCCCHHHHHCCCCEEEEEECCCCCCHHHCCCCCHHHHCCCCCEEEECCCCCEEEEEECCCC
Q ss_conf 86641423799996577753554355411025158764586642123388645786588754773689832588833489
Q gi|254780799|r 619 QMARASGIHVIMATQRPSVDVITGTIKANFPTRISFQVSSKIDSRTILGEQGAEQLLGQGDMLYMTGGGRVQRIHGPFVS 698 (806)
Q Consensus 619 q~ara~GiHli~aTqrPsvdvitg~ikan~p~riaf~v~s~~dSrtild~~gae~Llg~gdml~~~~~~~~~r~~g~~v~ 698 (806)
+-.|.-.|.-|--+|++.. ++.-.-..-+|+.| .|-.|.|..--.+ ...-....++++-
T Consensus 222 ~ssrSH~i~~i~i~~~~~~---~~~~~~~~~s~l~~-----------vDLagse~~~~~~-------~~~~~~~e~~~iN 280 (359)
T 1x88_A 222 YSSRSHSVFSVTIHMKETT---IDGEELVKIGKLNL-----------VDLAGSENIGRSG-------AVDKRAREAGNIN 280 (359)
T ss_dssp HHHHCEEEEEEEEEEEEEC---TTSCEEEEEEEEEE-----------EECCCCCC----------------------CCC
T ss_pred CCCCCCEEEEEEEEEEECC---CCCCCCEEEEEEEE-----------EECCCCCCHHHHH-------HHHHHHHCCCCCC
T ss_conf 1555625899999988526---78877378601378-----------8324344211103-------3454332024421
Q ss_pred --HHHHHHHHHHHHHCC-CCCCCCCCCC
Q ss_conf --889999999997128-9742110012
Q gi|254780799|r 699 --DIEVEKVVSHLKTQG-EAKYIDIKDK 723 (806)
Q Consensus 699 --~~ev~~v~~~~~~q~-~~~y~~~~~~ 723 (806)
=.-..+++..+..+. ...|.+....
T Consensus 281 ~Sl~~L~~~i~al~~~~~~ipyR~SkLT 308 (359)
T 1x88_A 281 QSLLTLGRVITALVERTPHVPYRESKLT 308 (359)
T ss_dssp HHHHHHHHHHHHHHTTCSCCCGGGSHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHHH
T ss_conf 3378999999998658996886368889
No 482
>>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} (A:)
Probab=44.50 E-value=18 Score=15.26 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=18.3
Q ss_pred EEEEEECCCCHHHHHHHHHHHH
Q ss_conf 2355304774067999999999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILS 477 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~S 477 (806)
.++|.|.-|+|||-.||.+.-.
T Consensus 6 ki~iiG~~~vGKTSLi~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998995889999999729
No 483
>>2gta_A Hypothetical protein YPJD; pyrophosphatase, NESG, structural genomics, PSI, protein structure initiative; 2.90A {Bacillus subtilis} (A:)
Probab=44.48 E-value=8.2 Score=17.74 Aligned_cols=19 Identities=21% Similarity=0.228 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHCCEEE
Q ss_conf 5889999998664142379
Q gi|254780799|r 610 IESAVQRLAQMARASGIHV 628 (806)
Q Consensus 610 ve~~i~rlaq~ara~GiHl 628 (806)
+-+.+.-|.++||..||.|
T Consensus 67 lgDvl~~l~~lA~~lgiDl 85 (119)
T 2gta_A 67 IGDVLFVLVCLANSLDISL 85 (119)
T ss_dssp HHHHHHHHHHHHHTTTCCH
T ss_pred HHHHHHHHHHHHHHHCCCH
T ss_conf 9999999999999989199
No 484
>>1wn2_A Peptidyl-tRNA hydrolase; riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.20A {Pyrococcus horikoshii OT3} PDB: 2d3k_A (A:)
Probab=44.44 E-value=18 Score=15.25 Aligned_cols=48 Identities=21% Similarity=0.400 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEE-----EEECCEEEEEEEEECCCCCHHHHHH
Q ss_conf 256654578999999742486328998-----4104424444432147863999997
Q gi|254780799|r 328 SPKVMQNNACTLKSVLSDFGIQGEIVN-----VRPGPVITLYELEPAPGIKSSRIIG 379 (806)
Q Consensus 328 s~eeL~~nA~lLE~tL~dFGVe~~Vv~-----v~pGPVVTrYEi~PApGVKvSKI~n 379 (806)
|+++|++ |.+++++.|+...++. =.+..++|.--|-|+|--.+.+|++
T Consensus 64 ~e~~l~~----l~~~a~~~~l~~~~v~DAG~Tei~~gs~TvlaigP~p~~~i~~itg 116 (121)
T 1wn2_A 64 SEEELFK----LKAEAEKLGLPNALIRDAGLTEIPPGTVTVLAVGPAPEEIVDKVTG 116 (121)
T ss_dssp SHHHHHH----HHHHHHHTTCCEEEEECTTCTTSCTTCEEEEEEEEEEHHHHHHHHT
T ss_pred CHHHHHH----HHHHHHHCCCCEEEEECCCCCEECCCCEEEEEECCCCHHHHHHHHC
T ss_conf 9899999----9999998799789998689867199986899978788888888748
No 485
>>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Rhodococcus SP} (A:1-86)
Probab=44.40 E-value=9.5 Score=17.28 Aligned_cols=48 Identities=15% Similarity=0.203 Sum_probs=38.3
Q ss_pred HHHHHH---HHHHCCC-EEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHC
Q ss_conf 899999---9996598-50001422200117789999999997798680227
Q gi|254780799|r 743 YKQAVD---IVLRDNK-ASISYIQRRLGIGYNRAASIIENMEEKGVIGPASS 790 (806)
Q Consensus 743 ~~~a~~---~v~~~~~-~s~s~lqr~~~igy~raar~~~~~e~~giv~~~~g 790 (806)
.+.+++ ++.+.++ .+.+=|.|++.+--..+-|++..|++.|+|-..+|
T Consensus 20 ~~r~l~IL~~l~~~~~~~tl~eia~~lg~~~st~~RlL~tL~~~g~v~~~~~ 71 (86)
T 2ia2_A 20 LARGLAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVELGYVATDGS 71 (86)
T ss_dssp HHHHHHHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEESSS
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCC
T ss_conf 9999999999973799969999999979399999999999997799665597
No 486
>>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} (A:)
Probab=44.36 E-value=14 Score=16.09 Aligned_cols=149 Identities=19% Similarity=0.263 Sum_probs=71.1
Q ss_pred CEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHH------------------------HHH
Q ss_conf 66785410020235530477406799999999999829957847888523100------------------------111
Q gi|254780799|r 445 KPIIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKML------------------------ELS 500 (806)
Q Consensus 445 ~pvv~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~v------------------------Els 500 (806)
+-+-.++.+===+-+.|.-|||||-.+|+|. ...|-+-==|.+|-|-+ +|+
T Consensus 23 ~~isf~v~~Gei~giiG~nGaGKSTll~~i~-----Gl~~p~~G~I~i~G~~i~~~~~~~~~~~~i~~~~q~~~l~~~lt 97 (240)
T 1ji0_A 23 KGIDLKVPRGQIVTLIGANGAGKTTTLSAIA-----GLVRAQKGKIIFNGQDITNKPAHVINRXGIALVPEGRRIFPELT 97 (240)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHT-----TSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSB
T ss_pred CCEEEEECCCCEEEEECCCCCCHHHHHHHHH-----CCCCCCCCEEEECCEEECCCCHHHHHHHCCEEECCCCCCCCCCC
T ss_conf 2305798799799999899985999999997-----79778974899988884376088997623266367555378657
Q ss_pred HCCCCHHHHCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH-HHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 02770343122--334304566899999999999999998708996899999-999887447866775446776545432
Q gi|254780799|r 501 VYDGIPNLLTP--VVTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNL-KVAQYHNTGKKFNRTVQTGFDRKTGEA 577 (806)
Q Consensus 501 ~Y~~iPHLl~p--VvTd~~kA~~aL~w~V~EMe~RY~l~a~~~vRni~~yN~-k~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (806)
+|+.+ ..+ --.+.+.....+.|+...+.+ ++-..+.-...+.+=++ |+.-|++--
T Consensus 98 v~enl---~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~LSgG~kqrv~iA~al~------------------ 155 (240)
T 1ji0_A 98 VYENL---XXGAYNRKDKEGIKRDLEWIFSLFPR-LKERLKQLGGTLSGGEQQXLAIGRALX------------------ 155 (240)
T ss_dssp HHHHH---HGGGTTCCCSSHHHHHHHHHHHHCHH-HHTTTTSBSSSSCHHHHHHHHHHHHHT------------------
T ss_pred HHHHH---HHHHHHCCCHHHHHHHHHHHHHHHCC-HHHHHHCCHHHCCHHHHHHHHHHHHHH------------------
T ss_conf 99987---88876038889999999999986407-688874853338999999999999998------------------
Q ss_pred CCCCCCCCCCCCCEEEEEHHHHH-HHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCC
Q ss_conf 22332232346986877634468-88873210058899999986641423799996577
Q gi|254780799|r 578 IYETEHFDFQHMPYIVVVIDEMA-DLMMVARKDIESAVQRLAQMARASGIHVIMATQRP 635 (806)
Q Consensus 578 ~~~~~~~~~~~lp~ivviiDEla-Dlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrP 635 (806)
.=|- +++.||=. -|=-.+ ...|..+-+.-+.-|...|+.|..-
T Consensus 156 ----------~~P~-ililDEPtsgLD~~~----~~~i~~~l~~l~~~g~tii~vth~l 199 (240)
T 1ji0_A 156 ----------SRPK-LLXXDEPSLGLAPIL----VSEVFEVIQKINQEGTTILLVEQNA 199 (240)
T ss_dssp ----------TCCS-EEEEECTTTTCCHHH----HHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred ----------HCCC-EEEECCCCCCCCHHH----HHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf ----------3999-899738754599999----9999999999984499999993878
No 487
>>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} (A:1-260,A:376-426)
Probab=44.29 E-value=12 Score=16.57 Aligned_cols=14 Identities=29% Similarity=0.420 Sum_probs=10.3
Q ss_pred EEEEECCCCHHHHH
Q ss_conf 35530477406799
Q gi|254780799|r 457 LLIAGTTGSGKSVA 470 (806)
Q Consensus 457 LLIAGtTGSGKSV~ 470 (806)
.++-+.|||||+.+
T Consensus 127 ~iv~~~TG~GKTlv 140 (311)
T 1nkt_A 127 NVAEMKTGEGKTLT 140 (311)
T ss_dssp EEEECCTTSCHHHH
T ss_pred CEEEEECCCCHHHH
T ss_conf 65887568869999
No 488
>>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} (A:)
Probab=44.24 E-value=18 Score=15.27 Aligned_cols=26 Identities=19% Similarity=0.364 Sum_probs=21.4
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 23553047740679999999999982
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYR 481 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk 481 (806)
=++.-|--|+||+-.+..|+-.|=.+
T Consensus 35 ii~L~G~lGAGKTtlvr~l~~~lg~~ 60 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGIGHQ 60 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 99998787689999999999976877
No 489
>>1ii8_A RAD50 ABC-ATPase; MRE11, DNA double-strand break repair, replication; 3.02A {Pyrococcus furiosus} (A:1-138)
Probab=44.09 E-value=18 Score=15.22 Aligned_cols=27 Identities=33% Similarity=0.628 Sum_probs=20.0
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHC
Q ss_conf 235530477406799999999999829
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRM 482 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~ 482 (806)
.-+|.|..|+|||-.+.+|-.-+-.+.
T Consensus 25 l~vi~G~Ng~GKStil~Ai~~~l~~~~ 51 (138)
T 1ii8_A 25 INLIIGQNGSGKSSLLDAILVGLYWPL 51 (138)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTS
T ss_pred CEEEECCCCCCCCHHHHHHHHHCCCCC
T ss_conf 389988899983119887788605885
No 490
>>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} (A:1-276)
Probab=44.08 E-value=14 Score=16.03 Aligned_cols=20 Identities=35% Similarity=0.576 Sum_probs=16.7
Q ss_pred EEEEEECCCCHHHHHHHHHH
Q ss_conf 23553047740679999999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI 475 (806)
-+-|-|-.|||||--+|.|-
T Consensus 49 ivgiiGpNGsGKSTLlk~I~ 68 (276)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILA 68 (276)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99999999955999999997
No 491
>>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 2.07A {Thermus thermophilus HB8} (A:158-334)
Probab=44.07 E-value=15 Score=15.83 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=18.6
Q ss_pred EEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 23553047740679999999999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSL 478 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~Sl 478 (806)
..++.|..|+|||..+|.+.-+-
T Consensus 2 ~V~iiG~~~vGKSsL~n~l~~~~ 24 (177)
T 1udx_A 2 DVGLVGYPNAGKSSLLAAMTRAH 24 (177)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEEEEECCCCCHHHHHHHCCCC
T ss_conf 59999726788565998741896
No 492
>>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} (A:1-335)
Probab=43.71 E-value=17 Score=15.42 Aligned_cols=35 Identities=23% Similarity=0.443 Sum_probs=18.7
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHH
Q ss_conf 235530477406799999999999829957847888523100
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKML 497 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~v 497 (806)
|+|..|-+|+||+-...+| ++=-++.|+.+|.-.+
T Consensus 52 ~~Ll~GPpGtGKT~lakal-------A~~l~~~~~~i~~s~~ 86 (335)
T 1g41_A 52 NILMIGPTGVGKTEIARRL-------AKLANAPFIKVEATKF 86 (335)
T ss_dssp CEEEECCTTSSHHHHHHHH-------HHHTTCCEEEEEGGGG
T ss_pred CEEEECCCCCCHHHHHHHH-------HHHHCCCEEEEECCCE
T ss_conf 2799899998899999999-------9985898798505610
No 493
>>2rn7_A IS629 ORFA; helix, all alpha, unknown function; NMR {Shigella flexneri} (A:)
Probab=43.61 E-value=18 Score=15.16 Aligned_cols=50 Identities=18% Similarity=0.187 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHC------CCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHC
Q ss_conf 0389999999965------9850001422200117789999999997798680227
Q gi|254780799|r 741 DLYKQAVDIVLRD------NKASISYIQRRLGIGYNRAASIIENMEEKGVIGPASS 790 (806)
Q Consensus 741 ~l~~~a~~~v~~~------~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~~g 790 (806)
+.=.+||+++.+. +..|++-+-|.|.|.+|.-.+++.+.++.|..+.+..
T Consensus 10 efK~~aV~l~~e~~~~~~~~g~sv~~vA~~lgis~~~l~~W~k~~~~~~~~~~~~~ 65 (108)
T 2rn7_A 10 EVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQHERDTGGDDGGL 65 (108)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHHHHHTTSCCCCCCC
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 99999999999862234666653999975357798996159987301245688888
No 494
>>2zon_G Cytochrome C551; nitrite, electron transfer, denitrification, oxidoreductase/electron transport complex; HET: HEM; 1.70A {Achromobacter xylosoxidans} (G:)
Probab=43.41 E-value=17 Score=15.35 Aligned_cols=18 Identities=6% Similarity=0.163 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHCCC
Q ss_conf 898899999999971289
Q gi|254780799|r 697 VSDIEVEKVVSHLKTQGE 714 (806)
Q Consensus 697 v~~~ev~~v~~~~~~q~~ 714 (806)
+||+|+..|++|++++.+
T Consensus 70 lt~~ei~~i~ayi~~~~~ 87 (87)
T 2zon_G 70 ADEATLRAAVAYMMDAAR 87 (87)
T ss_dssp CCHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHCC
T ss_conf 999999999999998539
No 495
>>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} (A:1-95)
Probab=43.38 E-value=9.2 Score=17.38 Aligned_cols=41 Identities=5% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHHHHHCCC-EEEEHHHHHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 99999996598-500014222001177899999999977986
Q gi|254780799|r 745 QAVDIVLRDNK-ASISYIQRRLGIGYNRAASIIENMEEKGVI 785 (806)
Q Consensus 745 ~a~~~v~~~~~-~s~s~lqr~~~igy~raar~~~~~e~~giv 785 (806)
+.++++.+.+. .|.+-|.+++.+.-..+-|++..||+.|+|
T Consensus 27 ~iL~~l~~~~~~~~~~eia~~lgl~~st~~RlL~tL~~~G~v 68 (95)
T 2o0y_A 27 DLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATXCARSVL 68 (95)
T ss_dssp HHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEE
T ss_conf 999999747999899999999792989999999999966908
No 496
>>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor protein; HET: ADP; 3.25A {Neurospora crassa} (A:)
Probab=43.29 E-value=14 Score=15.93 Aligned_cols=16 Identities=44% Similarity=0.675 Sum_probs=0.0
Q ss_pred EEEEEECCCCHHHHHH
Q ss_conf 2355304774067999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAI 471 (806)
Q Consensus 456 HLLIAGtTGSGKSV~i 471 (806)
.++.-|.|||||+-.+
T Consensus 139 ti~ayGqtgSGKTyTl 154 (443)
T 2owm_A 139 CIFAYGQTGSGKSYTM 154 (443)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCCCCC
T ss_conf 2663212576674000
No 497
>>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus} (A:)
Probab=43.20 E-value=8.8 Score=17.51 Aligned_cols=12 Identities=25% Similarity=0.708 Sum_probs=0.0
Q ss_pred CCCCCEEEECCC
Q ss_conf 588754773689
Q gi|254780799|r 675 LGQGDMLYMTGG 686 (806)
Q Consensus 675 lg~gdml~~~~~ 686 (806)
|.+|||||+...
T Consensus 69 LkHGd~l~l~ys 80 (80)
T 2pjh_A 69 IKHGDLLFLFPS 80 (80)
T ss_dssp CCTTCCEEC---
T ss_pred CCCCCEEEEECC
T ss_conf 877788998159
No 498
>>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, complete proteome, DNA binding, DNA repair; HET: DNA ADP; 2.10A {Escherichia coli} (A:568-768)
Probab=43.19 E-value=18 Score=15.12 Aligned_cols=54 Identities=20% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHCCCC-CHHHCCCCCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 34302210-00210456666667854100202355304774067999999999998
Q gi|254780799|r 426 VFEKNQCD-LAINLGKSIEGKPIIADLARMPHLLIAGTTGSGKSVAINTMILSLLY 480 (806)
Q Consensus 426 ~f~~s~~~-L~iaLGKdI~G~pvv~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLy 480 (806)
.+++..|| |....++..-.+.+..+=.+ -.++|-|.-.||||+.+-+|-+..++
T Consensus 12 ~i~~~rhP~l~~~~~~~~vpNdi~l~~~~-~~~iiTGpN~~GKSt~Lk~i~~~~iL 66 (201)
T 1wb9_A 12 RITEGRHPVVEQVLNEPFIANPLNLSPQR-RMLIITGPNMGGKSTYMRQTALIALM 66 (201)
T ss_dssp EEEEECCTTHHHHCSSCCCCEEEEECSSS-CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEECCCC-EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 01047532120123465667268832576-18998457877626789999999999
No 499
>>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class member, structural genomics; 2.20A {Eubacterium ventriosum atcc 27560} (A:)
Probab=43.13 E-value=18 Score=15.17 Aligned_cols=18 Identities=22% Similarity=0.403 Sum_probs=0.0
Q ss_pred EEEEECCCCHHHHHHHHH
Q ss_conf 355304774067999999
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTM 474 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~i 474 (806)
..|.|..|||||---+.+
T Consensus 9 I~i~G~~GsGKsTia~~L 26 (201)
T 3fdi_A 9 IAIGREFGSGGHLVAKKL 26 (201)
T ss_dssp EEEEECTTSSHHHHHHHH
T ss_pred EEECCCCCCCHHHHHHHH
T ss_conf 996489988879999999
No 500
>>1a56_A C-551, ferricytochrome C-552; hemoprotein, prokaryotic electron transport; HET: HEC; NMR {Nitrosomonas europaea} (A:)
Probab=42.94 E-value=13 Score=16.17 Aligned_cols=18 Identities=22% Similarity=0.213 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHC
Q ss_conf 348988999999999712
Q gi|254780799|r 695 PFVSDIEVEKVVSHLKTQ 712 (806)
Q Consensus 695 ~~v~~~ev~~v~~~~~~q 712 (806)
+.+||+|+..|+.|+++|
T Consensus 63 ~~ls~~e~~~i~~yi~sl 80 (81)
T 1a56_A 63 VNVSDADAKALADWILTL 80 (81)
T ss_dssp CSSSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHC
T ss_conf 438999999999999874
Done!