HHsearch results for GI: 254780799 and protein with PDBid: 2qby_A
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.24 E-value=0.079 Score=31.72 Aligned_cols=157 Identities=20% Similarity=0.293 Sum_probs=82.1
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCCHHHH---CCCCCCHHHHHHHHHHHHHHH
Q ss_conf 20235530477406799999999999829957847888523100111027703431---223343045668999999999
Q gi|254780799|r 454 MPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLL---TPVVTNPQKAVTVLKWLVCEM 530 (806)
Q Consensus 454 MPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~iPHLl---~pVvTd~~kA~~aL~w~V~EM 530 (806)
.+|+||-|-.|+||+-.+..+.-.| .+....+++++-++-.... +.|...-+.+ .+-.....
T Consensus 45 ~~~ili~GppGtGKT~l~~~la~~l-~~~~~~~~~~i~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~------------- 109 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKL-HKKFLGKFKHVYINTRQID-TPYRVLADLLESLDVKVPFTG------------- 109 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHH-HHHTCSSCEEEEEEHHHHC-SHHHHHHHHTTTTSCCCCSSS-------------
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHH-HHHCCCCCEEEEEEHHHHC-CHHHHHHHHHHHHCCCCCHHH-------------
T ss_conf 9808998799881999999999998-7524898528996015633-417788988764110000246-------------
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCCHH
Q ss_conf 99999998708996899999999887447866775446776545432223322323469868776344688887321005
Q gi|254780799|r 531 EERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVARKDI 610 (806)
Q Consensus 531 e~RY~l~a~~~vRni~~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ivviiDElaDlmm~~~~~v 610 (806)
.+.....++...... +..-.+++++||...++.....+.
T Consensus 110 ------------~~~~~~~~~~~~~l~-----------------------------~~~~~~~~ilde~d~~~~~~~~~~ 148 (386)
T 2qby_A 110 ------------LSIAELYRRLVKAVR-----------------------------DYGSQVVIVLDEIDAFVKKYNDDI 148 (386)
T ss_dssp ------------CCHHHHHHHHHHHHH-----------------------------TCCSCEEEEEETHHHHHHSSCSTH
T ss_pred ------------HHHHHHHHHHHHHHH-----------------------------HCCCCCEEEEECHHHHHHHHHHHH
T ss_conf ------------569999999998763-----------------------------126632143200112310211369
Q ss_pred HHHHHHHHHHHHHCCEEEEEEECCCC-CCCCCHHHHHCC-CCEEEEEECCCCCCHHHC
Q ss_conf 88999999866414237999965777-535543554110-251587645866421233
Q gi|254780799|r 611 ESAVQRLAQMARASGIHVIMATQRPS-VDVITGTIKANF-PTRISFQVSSKIDSRTIL 666 (806)
Q Consensus 611 e~~i~rlaq~ara~GiHli~aTqrPs-vdvitg~ikan~-p~riaf~v~s~~dSrtil 666 (806)
.....++....+-..+.+|..+..+. .+-+..-++.-+ +.+|-|.--+.-+-.-|+
T Consensus 149 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~sr~~~~~i~~~~~~~~e~~~Il 206 (386)
T 2qby_A 149 LYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDIL 206 (386)
T ss_dssp HHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCEEEEEECCCCHHHHHHCCHHHHCCCCCCCCCCCCCHHHHHHHH
T ss_conf 9998762432467746999734761334331402341046651123898999999999