HHSEARCH alignment of GI: 254780799 and SCOP domain: d1sxjd2

Alignment
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=93.62  E-value=0.03  Score=33.11  Aligned_cols=78  Identities=12%  Similarity=0.165  Sum_probs=46.2

Q ss_pred             CCCCEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHCCCCEEEEEECCCCCCHHHC
Q ss_conf             46986877634468888732100588999999866414237999965777535543554110251587645866421233
Q gi|254780799|r  587 QHMPYIVVVIDEMADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRISFQVSSKIDSRTIL  666 (806)
Q Consensus       587 ~~lp~ivviiDElaDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPsvdvitg~ikan~p~riaf~v~s~~dSrtil  666 (806)
                      ...++-|+|+||.-.|.    ++....+.++-+.. ..-..+|++|.+++-.          +.+             |.
T Consensus       105 ~~~~~~viiiDe~d~l~----~~~~~~l~~~~~~~-~~~~~~i~~~~~~~~~----------~~~-------------l~  156 (237)
T d1sxjd2         105 PCPPYKIIILDEADSMT----ADAQSALRRTMETY-SGVTRFCLICNYVTRI----------IDP-------------LA  156 (237)
T ss_dssp             CCCSCEEEEETTGGGSC----HHHHHHHHHHHHHT-TTTEEEEEEESCGGGS----------CHH-------------HH
T ss_pred             CCCCCEEEEEECCCCCC----HHHHHHHHHCCCCC-CCCCCCCCCCCCCCCC----------CCC-------------CC
T ss_conf             56673699995513367----77788876301222-2333321224664222----------331-------------11


Q ss_pred             CCCCHHHHCCCCCEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHC
Q ss_conf             8864578658875477368983258883348988999999999712
Q gi|254780799|r  667 GEQGAEQLLGQGDMLYMTGGGRVQRIHGPFVSDIEVEKVVSHLKTQ  712 (806)
Q Consensus       667 d~~gae~Llg~gdml~~~~~~~~~r~~g~~v~~~ev~~v~~~~~~q  712 (806)
                                          ++..+++=.-.+.+|+.++...+..+
T Consensus       157 --------------------sr~~~i~f~~~~~~~~~~~L~~i~~~  182 (237)
T d1sxjd2         157 --------------------SQCSKFRFKALDASNAIDRLRFISEQ  182 (237)
T ss_dssp             --------------------HHSEEEECCCCCHHHHHHHHHHHHHT
T ss_pred             --------------------CHHHHHCCCCCCCCCCCHHHHHHHHH
T ss_conf             --------------------00011023333332110010114555


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]