RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780799|ref|YP_003065212.1| DNA translocase FtsK
[Candidatus Liberibacter asiaticus str. psy62]
(806 letters)
>gnl|CDD|31860 COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related
proteins [Cell division and chromosome partitioning].
Length = 858
Score = 459 bits (1182), Expect = e-129
Identities = 217/531 (40%), Positives = 298/531 (56%), Gaps = 39/531 (7%)
Query: 280 SITEYQLNADIVQNISQSNLINHGTGTFVLPSKEILSTSQSPVNQMTFSPKVMQNNACTL 339
+I + + G T LP +++ + + + + L
Sbjct: 354 AIKGELARRQRNHINAYTKSYKRGKDTPPLPHLFLIADEFAELKSEHPDFAELLVSIARL 413
Query: 340 KSVLSDFGIQGEIVNVRPGPVITLYELEPAPGIKSSRIIGLSDDIARSMSAISAR-VAVI 398
L I GP T +E+ G+K I L +D A ++ A S R +A I
Sbjct: 414 GRSLGIHLILATQKPDGVGPSNTRFEIALKVGVKVDSIEILGNDDAAALVAKSRRYLAPI 473
Query: 399 PRRNAIGIELPN-DIRETVMLRDLIVSRVFEKNQCDLAINLGKSIEGKPIIADLARMPHL 457
P ++ IG + PN LR+L+ F + I+L K I +PI+ DLA+ HL
Sbjct: 474 PGKSYIGFQSPNSGRPWLPPLRELLDLDEFLERFPLGVIDLPKDIRQEPIVIDLAKAGHL 533
Query: 458 LIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQ 517
LIAG TGSGKSVA+NTMILSLLY +P + R +IDPKMLEL+ YDG+P+L PVVT+ +
Sbjct: 534 LIAGATGSGKSVALNTMILSLLYTHSPEEVRFYIIDPKMLELAAYDGLPHLGDPVVTDEK 593
Query: 518 -KAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGE 576
KA L LV EME RY+ S+ GVRNI+G+N K+A +
Sbjct: 594 EKAEKALAELVAEMERRYKLFSEKGVRNIEGYNEKIAGAIPDEE---------------- 637
Query: 577 AIYETEHFDFQHMPYIVVVIDEMADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPS 636
+PYIV++IDE ADLMMVA K++E + RLAQ RA+GIH+I+ATQRPS
Sbjct: 638 ------------LPYIVIIIDEYADLMMVAGKELEELIARLAQKGRAAGIHLILATQRPS 685
Query: 637 VDVITGTIKANFPTRISFQVSSKIDSRTILGEQGAEQLLGQGDMLYMTGG-GRVQRIHGP 695
VDVITG IKAN PTRI+ ++SSKIDSR ILG+ GAE+LLG+GDML++ G + R+
Sbjct: 686 VDVITG-IKANIPTRIALRLSSKIDSRLILGQDGAEKLLGRGDMLFLGPGDAKPVRVLPA 744
Query: 696 FVSDIEVEKVVSHLKTQGEAKYID--IKDKILLNEEMRF----SENSSVADDLYKQAVDI 749
FVSD EVE+VV HLK+Q E Y+D +L++ E D+L+ +A ++
Sbjct: 745 FVSDEEVEEVVEHLKSQVEPVYLDLATNPHLLISGETTVLRAIDREEEAMDELFDEAKEL 804
Query: 750 VLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPASSTGKREILISS 800
VL KAS S +QR L +G NRAA++IE+ME G++GP + REIL+
Sbjct: 805 VLPPPKASTSLLQRALDLGLNRAATLIESMELLGIVGPPNGPKGREILVVE 855
>gnl|CDD|144975 pfam01580, FtsK_SpoIIIE, FtsK/SpoIIIE family. FtsK has extensive
sequence similarity to wide variety of proteins from
prokaryotes and plasmids, termed the FtsK/SpoIIIE
family. This domain contains a putative ATP binding
P-loop motif. It is found in the FtsK cell division
protein from E. coli and the stage III sporulation
protein E SpoIIIE which has roles in regulation of
prespore specific gene expression in B. subtilis. A
mutation in FtsK causes a temperature sensitive block in
cell division and it is involved in peptidoglycan
synthesis or modification. The SpoIIIE protein is
implicated in intercellular chromosomal DNA transfer.
Length = 202
Score = 208 bits (531), Expect = 6e-54
Identities = 94/225 (41%), Positives = 138/225 (61%), Gaps = 27/225 (12%)
Query: 417 MLRDLIVSRVFEKNQCDLAINLGKSIEGKPIIADLARMPHLLIAGTTGSGKSVAINTMIL 476
L++L+ + F ++ L I LGK I G P++ADL +MPHLLIAG TGSGKS +NT+IL
Sbjct: 1 ELKELLDGKPFRGSRSRLTIALGKDISGNPVVADLVKMPHLLIAGATGSGKSTFLNTLIL 60
Query: 477 SLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEMEERYQK 536
SL R +P + RL +IDPK EL+ + +P+LL+ V T+P+ A++ L+ LV EME RY
Sbjct: 61 SLAARHSPEEVRLYLIDPKGGELAALEDLPHLLSAVATDPEDALSALRALVAEMERRYAL 120
Query: 537 MSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVI 596
+ ++GVR+I+ +N ++A+ P IVV++
Sbjct: 121 LKQLGVRSIEEYNGEIAEDIL-------------GGAGWLEEL----------PPIVVIV 157
Query: 597 DEMADLMMVARKD----IESAVQRLAQMARASGIHVIMATQRPSV 637
DE A+LM+ A KD +E A+ RLA+M RA+GIH+++ATQRP V
Sbjct: 158 DERAELMLAAPKDSEMRVEGALARLARMGRAAGIHLLLATQRPGV 202
>gnl|CDD|29993 cd01127, TrwB, Bacterial conjugation protein TrwB, ATP binding
domain. TrwB is a homohexamer encoded by conjugative
plasmids in Gram-negative bacteria. TrwB also has an all
alpha domain which has been hypothesized to be
responsible for DNA binding. TrwB is a component of Type
IV secretion and is responsible for the horizontal
transfer of DNA between bacteria..
Length = 410
Score = 38.7 bits (90), Expect = 0.006
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 441 SIEGKPIIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDP 494
+I G P D A H +I GTTG+GK+ I ++ S+ R R I+ DP
Sbjct: 30 TIAGLPFPKD-AEEAHTMIIGTTGTGKTTQIRELLASIRAR----GDRAIIYDP 78
>gnl|CDD|29995 cd01129, PulE-GspE, PulE/GspE The type II secretory pathway is the
main terminal branch of the general secretory pathway
(GSP). It is responsible for the export the majority of
Gram-negative bacterial exoenzymes and toxins. PulE is a
cytoplasmic protein of the GSP, which contains an ATP
binding site and a tetracysteine motif. This subgroup
also includes PillB and HofB..
Length = 264
Score = 37.5 bits (87), Expect = 0.014
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 422 IVSRVFEKNQCDLAIN-LGKSIEGKPIIADLARMPH--LLIAGTTGSGKSVAINTMILSL 478
+V R+ +K L + LG E I L PH +L+ G TGSGK+ + + + L
Sbjct: 45 VVLRILDKKNQILDLEKLGLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSEL 104
>gnl|CDD|32635 COG2804, PulE, Type II secretory pathway, ATPase PulE/Tfp pilus
assembly pathway, ATPase PilB [Cell motility and
secretion / Intracellular trafficking and secretion].
Length = 500
Score = 36.1 bits (83), Expect = 0.042
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 422 IVSRVFEKNQCDLAIN-LGKSIEGKPIIADLARMPH--LLIAGTTGSGKSVAINTMILSL 478
+V R+ +K+Q L + LG S + L P +L+ G TGSGK+ + + L
Sbjct: 223 VVLRILDKDQVILDLEKLGMSPFQLARLLRLLNRPQGLILVTGPTGSGKTTTLYAALSEL 282
>gnl|CDD|33254 COG3451, VirB4, Type IV secretory pathway, VirB4 components
[Intracellular trafficking and secretion].
Length = 796
Score = 34.6 bits (79), Expect = 0.12
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 427 FEKNQCDLAINLGKSIEGKPIIADLAR---MPHLLIAGTTGSGKSVAINTMILSLLYRMT 483
F N + + K+ +G P + + H LI G TG+GK+V ++ ++ L
Sbjct: 406 FRGNPWGEPLTVLKTEDGSPFYFNFHVGEDVGHTLIIGPTGAGKTVLLSFLLAQALKYGN 465
Query: 484 PAQCRLIMIDP 494
P +++ D
Sbjct: 466 P---QIVAFDK 473
>gnl|CDD|145224 pfam01935, DUF87, Domain of unknown function DUF87. The function
of this prokaryotic domain is unknown. It contains
several conserved aspartates and histidines that could
be metal ligands.
Length = 218
Score = 34.2 bits (79), Expect = 0.14
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 11/65 (16%)
Query: 436 INLGKSIEGK--PIIADLARM--PHLLIAGTTGSGKSVAINTM--ILSLLYRMTPAQCRL 489
I +G+ ++G P+ DL ++ H I G+TGSGKS NT+ +L L +
Sbjct: 1 IEIGRLLDGSEVPVYLDLNKLVSRHFAILGSTGSGKS---NTVAVLLEELLEK--KGATV 55
Query: 490 IMIDP 494
++ DP
Sbjct: 56 LIFDP 60
>gnl|CDD|107296 cd06301, PBP1_rhizopine_binding_like, Periplasmic binding proteins
specific to rhizopines. Periplasmic binding proteins
specific to rhizopines, which are simple sugar-like
compounds produced in the nodules induced by the
symbiotic root nodule bacteria, such as Rhizobium and
Sinorhizobium. Rhizopine-binding-like proteins from
other bacteria are also included. Two inositol based
rhizopine compounds are known to date:
L-3-O-methly-scyllo-inosamine (3-O-MSI) and
scyllo-inosamine. Bacterial strains that can metabolize
rhizopine have a greater competitive advantage in
nodulation and rhizopine synthesis is regulated by
NifA/NtrA regulatory transcription activators which are
maximally expressed at the onset of nitrogen fixation in
bacteroids. The members of this group belong to the
pentose/hexose sugar-binding protein family of the type
I periplasmic binding protein superfamily.
Length = 272
Score = 33.0 bits (76), Expect = 0.37
Identities = 27/114 (23%), Positives = 51/114 (44%), Gaps = 29/114 (25%)
Query: 612 SAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRISFQVSSKIDSRTILGEQGA 671
+A + + A A+GI ++ +RP N P +++ S ++ + + E A
Sbjct: 68 AATAPIVKAANAAGIPLVYVNRRPE----------NAPKGVAYVGSDEVVAGRLQAEYVA 117
Query: 672 EQLLGQGDMLYMTG----GGRVQRIHGPFVSDIEVEKVVSHLKTQGEAKYIDIK 721
++L G+G++ + G ++ R G VE+V+ AKY DIK
Sbjct: 118 DKLGGKGNVAILMGPLGQSAQIDRTKG-------VEEVL--------AKYPDIK 156
>gnl|CDD|177025 CHL00093, groEL, chaperonin GroEL.
Length = 529
Score = 32.8 bits (75), Expect = 0.38
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
Query: 767 IGYNRAASIIENMEEKGVIGPAS---STGKREILISSM---EEC 804
IGYN A + NM E G+I PA S + I+SM EC
Sbjct: 477 IGYNAANNKFVNMYEAGIIDPAKVTRSALQNAASIASMILTTEC 520
>gnl|CDD|31711 COG1522, Lrp, Transcriptional regulators [Transcription].
Length = 154
Score = 32.7 bits (74), Expect = 0.42
Identities = 12/46 (26%), Positives = 27/46 (58%)
Query: 740 DDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVI 785
DD+ ++ + ++ D + S + + R+G+ + I+ +EE+GVI
Sbjct: 7 DDIDRRILRLLQEDARISNAELAERVGLSPSTVLRRIKRLEEEGVI 52
>gnl|CDD|31077 COG0733, COG0733, Na+-dependent transporters of the SNF family
[General function prediction only].
Length = 439
Score = 32.0 bits (73), Expect = 0.71
Identities = 42/165 (25%), Positives = 66/165 (40%), Gaps = 22/165 (13%)
Query: 21 WSKKKMKIVAGLILLCTVFAITLALGTWDVYD----PSFSYITLRSPKNFLGYGGAIFAD 76
+K M ++ L ++ + A+TL G + P FS +T PK +L G F
Sbjct: 170 ANKIMMPLLFVLFIILVIRAVTLP-GAMEGLKFLFKPDFSKLT--DPKVWLAALGQAFFS 226
Query: 77 VAIQFFGIASVFFLPPPTMWALSLLFDKKIYCFSKRATAWLINILVSATF-FASFSPSQS 135
+++ F M S KK S + L+N L+S F S
Sbjct: 227 LSLGFG-----------IMITYSSYLSKKSDLVSSALSIVLLNTLISLLAGLVIFPALFS 275
Query: 136 WPIQNGFGGIIGDLIIRLPFLFFE-SYPRKLGILFFQMILFLAMS 179
+ G G + I LP +F + GILFF ++LF A++
Sbjct: 276 FGADASQG--PGLVFIVLPAVFNQMPLGTLFGILFFLLLLFAALT 318
>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC, RecA-like,
VirD4-like, PilT-like, and SF1/2 helicases. Members of
the AAA+ ATPases function as molecular chaperons, ATPase
subunits of proteases, helicases, or nucleic-acid
stimulated ATPases. The AAA+ proteins contain several
distinct features in addition to the conserved
alpha-beta-alpha core domain structure and the Walker A
and B motifs of the P-loop NTPases..
Length = 151
Score = 31.7 bits (72), Expect = 0.81
Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 1/82 (1%)
Query: 575 GEAIYETEHFDFQHMPYIVVVIDEMADLMMVARKDIESAVQRLAQM-ARASGIHVIMATQ 633
G + + V+ IDE+ L A+ + ++ L + + VI AT
Sbjct: 69 GHFLVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATN 128
Query: 634 RPSVDVITGTIKANFPTRISFQ 655
RP + + + RI
Sbjct: 129 RPLLGDLDRALYDRLDIRIVIP 150
>gnl|CDD|30819 COG0471, CitT, Di- and tricarboxylate transporters [Inorganic ion
transport and metabolism].
Length = 461
Score = 31.4 bits (71), Expect = 0.99
Identities = 22/141 (15%), Positives = 43/141 (30%), Gaps = 24/141 (17%)
Query: 72 AIFADVAIQFFGIASVFFLPPPTMWALSLLFDKKIYCFSKR----ATAWLINILVSATFF 127
A+ +A+ G F W ++L I + A A L+ +L+ + F
Sbjct: 10 ALLVLLALVLLGPVP--FGLSGFAWLFAILVAAIILWILEAIPLFALAILVIVLLVLSGF 67
Query: 128 ASFSPSQSWPIQNGFGGIIG------------------DLIIRLPFLFFESYPRKLGILF 169
+ + I + FF + PR L +
Sbjct: 68 ILAISASKLALSGFANSTIWLIFGLFLLSKGLEKTGLGKRLALHLLRFFGTTPRGLALGL 127
Query: 170 FQMILFLAMSWLLIYSSSAIF 190
+ LFL+ ++ ++ I
Sbjct: 128 VLLTLFLSPAFPSNTATGGIM 148
>gnl|CDD|30817 COG0469, PykF, Pyruvate kinase [Carbohydrate transport and
metabolism].
Length = 477
Score = 30.9 bits (70), Expect = 1.3
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 14/65 (21%)
Query: 596 IDEMADLMMVARKD---------IESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKA 646
I E +D +MVAR D + +R+ + AR +G VI ATQ ++ I+
Sbjct: 236 IIEASDGIMVARGDLGVEIPLEEVPIIQKRIIRKARRAGKPVITATQ-----MLESMIEN 290
Query: 647 NFPTR 651
PTR
Sbjct: 291 PRPTR 295
>gnl|CDD|30033 cd00530, PTE, Phosphotriesterase (PTE) catalyzes the hydrolysis of
organophosphate nerve agents, including the chemical
warfare agents VX, soman, and sarin as well as the
insecticide paraoxon. PTE exists as a homodimer with one
active site per monomer. The active site is located next
to a binuclear metal center, at the C-terminal end of a
TIM alpha- beta barrel motif. The native enzyme
contains two zinc ions at the active site however these
can be replaced with other metals such as cobalt,
cadmium, nickel or manganese and the enzyme remains
active..
Length = 293
Score = 30.6 bits (69), Expect = 1.7
Identities = 9/19 (47%), Positives = 18/19 (94%)
Query: 614 VQRLAQMARASGIHVIMAT 632
V++LA++ARA+G++++ AT
Sbjct: 61 VEKLAEVARATGVNIVAAT 79
>gnl|CDD|35569 KOG0348, KOG0348, KOG0348, ATP-dependent RNA helicase [RNA
processing and modification].
Length = 708
Score = 30.4 bits (68), Expect = 1.8
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 458 LIAGTTGSGKSVAINTMILSLLYRMTPAQCR------LIMIDPKMLELSVYDGIPNLLTP 511
L+ TGSGK++A I+ L M P R L+++ + L L +Y+ + LL P
Sbjct: 178 LVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLKP 237
>gnl|CDD|34510 COG4901, COG4901, Ribosomal protein S25 [Translation, ribosomal
structure and biogenesis].
Length = 107
Score = 30.4 bits (68), Expect = 2.1
Identities = 14/61 (22%), Positives = 29/61 (47%)
Query: 738 VADDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPASSTGKREIL 797
V ++L + V R+ + + R GI + A ++ ++EE+GV+ S ++ I
Sbjct: 42 VDEELLDKIRKEVPRERVVTPYVLASRYGINGSVARIVLRHLEEEGVVQLVSKNRRQAIY 101
Query: 798 I 798
Sbjct: 102 T 102
>gnl|CDD|30975 COG0630, VirB11, Type IV secretory pathway, VirB11 components, and
related ATPases involved in archaeal flagella
biosynthesis [Cell motility and secretion /
Intracellular trafficking and secretion].
Length = 312
Score = 30.0 bits (67), Expect = 2.4
Identities = 30/161 (18%), Positives = 55/161 (34%), Gaps = 30/161 (18%)
Query: 351 EIVNVRPGPVITLYELEPAPGIKSSRIIGLSDDIARSMSAISARVA--VIPRRNAIGIEL 408
+IV PGPV ++ + ++ +++ ++ R + + L
Sbjct: 29 DIVVNGPGPVYVEHKGGGS--YVTNIPFLTEEELDSLAIRLAQRSGKPISEANPILDATL 86
Query: 409 PNDIRETVMLRDLIVSRVFEKNQCDLAI--------NLGKSIEGKPI----IADLARM-- 454
P+ R ++L + N I IE I A L
Sbjct: 87 PDGSRIQIVLGPEV-----SPNGSSFTIRKFSDEPITPEDLIEYGTISPEQAAYLWLAIE 141
Query: 455 --PHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMID 493
++I G T SGK T +L+ L P + R++ I+
Sbjct: 142 ARKSIIICGGTASGK-----TTLLNALLDFIPPEERIVTIE 177
>gnl|CDD|32636 COG2805, PilT, Tfp pilus assembly protein, pilus retraction ATPase
PilT [Cell motility and secretion / Intracellular
trafficking and secretion].
Length = 353
Score = 29.8 bits (67), Expect = 2.8
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 446 PIIADLARMPH--LLIAGTTGSGKSVAINTMI 475
PI+ +LA P +L+ G TGSGKS + MI
Sbjct: 115 PIVRELAESPRGLILVTGPTGSGKSTTLAAMI 146
>gnl|CDD|30782 COG0433, COG0433, Predicted ATPase [General function prediction
only].
Length = 520
Score = 29.9 bits (66), Expect = 2.8
Identities = 35/181 (19%), Positives = 59/181 (32%), Gaps = 21/181 (11%)
Query: 342 VLSDFGIQGEIVNVRPGPVITLYELEPAPGIKSSRIIGLSDDIARSMSAISARVAVIPRR 401
V+ D + VR G + + I + L I S+ + I +R
Sbjct: 42 VIEDDEGDLVLGAVRGGVNLRDILADRITSIDLEALADLEAFIISSVLDLEGSYVGIAKR 101
Query: 402 NAIGIELPNDIRETVMLRDLIVSRVFEKNQCDLAINLG-------------KSIEGKPII 448
+G P + +R S V+ + L LG P+
Sbjct: 102 RVLGELEPELLPPRSPVR--PGSPVYRASDEVLEKILGFDVDGRGLLLGALLDGGEVPVY 159
Query: 449 ADLARMP---HLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGI 505
DL ++ H+ I G+TGSGKS N + L + +++ DP +
Sbjct: 160 LDLNKLVLARHIAILGSTGSGKS---NLAKVLLEELLGKDGATVVIFDPHGEYDLLRLDR 216
Query: 506 P 506
Sbjct: 217 A 217
Score = 29.2 bits (64), Expect = 5.0
Identities = 19/80 (23%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 590 PYIVVVIDEMADLMMVARKD-IESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANF 648
+++VI+E + +RK ++ ++R+A+ R G+ +++ATQRPS + + +
Sbjct: 391 GPLLIVIEEAHNFAPSSRKAPVKDIIERIAREGRKFGVGLVLATQRPS--DLDDLVLSQA 448
Query: 649 PTRISFQVSSKIDSRTILGE 668
T+I ++ D + I
Sbjct: 449 NTKIILRLVEPTDQKYISRA 468
>gnl|CDD|73003 cd03244, ABCC_MRP_domain2, Domain 2 of the ABC subfamily C. This
family is also known as MRP (mulrtidrug
resisitance-associated protein). Some of the MRP
members have five additional transmembrane segments in
their N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate..
Length = 221
Score = 29.7 bits (67), Expect = 3.0
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 5/35 (14%)
Query: 459 IAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMID 493
I G TGSGKS +++L+L R+ I+ID
Sbjct: 35 IVGRTGSGKS----SLLLALF-RLVELSSGSILID 64
>gnl|CDD|144365 pfam00735, Septin, Septin. Members of this family include CDC3,
CDC10, CDC11 and CDC12/Septin. Members of this family
bind GTP. As regards the septins, these are polypeptides
of 30-65kDa with three characteristic GTPase motifs
(G-1, G-3 and G-4) that are similar to those of the Ras
family. The G-4 motif is strictly conserved with a
unique septin consensus of AKAD. Most septins are
thought to have at least one coiled-coil region, which
in some cases is necessary for intermolecular
interactions that allow septins to polymerize to form
rod-shaped complexes. In turn, these are arranged into
tandem arrays to form filaments. They are
multifunctional proteins, with roles in cytokinesis,
sporulation, germ cell development, exocytosis and
apoptosis.
Length = 280
Score = 29.6 bits (67), Expect = 3.5
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 457 LLIAGTTGSGKSVAINTMILSLLYR 481
L++ G +G GK+ INT+ L+ LY
Sbjct: 7 LMVVGESGLGKTTLINTLFLTDLYP 31
>gnl|CDD|133259 cd01850, CDC_Septin, CDC/Septin. Septins are a conserved family of
GTP-binding proteins associated with diverse processes
in dividing and non-dividing cells. They were first
discovered in the budding yeast S. cerevisiae as a set
of genes (CDC3, CDC10, CDC11 and CDC12) required for
normal bud morphology. Septins are also present in
metazoan cells, where they are required for cytokinesis
in some systems, and implicated in a variety of other
processes involving organization of the cell cortex and
exocytosis. In humans, 12 septin genes generate dozens
of polypeptides, many of which comprise heterooligomeric
complexes. Since septin mutants are commonly defective
in cytokinesis and formation of the neck formation of
the neck filaments/septin rings, septins have been
considered to be the primary constituents of the neck
filaments. Septins belong to the GTPase superfamily for
their conserved GTPase motifs and enzymatic activities.
Length = 276
Score = 29.4 bits (67), Expect = 3.5
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 457 LLIAGTTGSGKSVAINTMILSLLYR 481
+++ G +G GKS INT+ + L
Sbjct: 7 IMVVGESGLGKSTFINTLFNTKLIP 31
>gnl|CDD|36209 KOG0991, KOG0991, KOG0991, Replication factor C, subunit RFC2
[Replication, recombination and repair].
Length = 333
Score = 29.5 bits (66), Expect = 3.8
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 447 IIADLARMPHLLIAGTTGSGKSVAINTMILSLL 479
+IA MP+L+I+G G+GK+ +I + LL
Sbjct: 41 VIAKEGNMPNLIISGPPGTGKTTSILCLARELL 73
>gnl|CDD|31342 COG1148, HdrA, Heterodisulfide reductase, subunit A and related
polyferredoxins [Energy production and conversion].
Length = 622
Score = 29.2 bits (65), Expect = 4.5
Identities = 10/42 (23%), Positives = 21/42 (50%)
Query: 762 QRRLGIGYNRAASIIENMEEKGVIGPASSTGKREILISSMEE 803
R+ GY + ++I N+E + ++ P TG + + S +
Sbjct: 316 TRKEEYGYGKYPNVITNLELERMLNPNGPTGGKVLRPSDGKP 357
>gnl|CDD|72986 cd03227, ABC_Class2, ABC-type Class 2 contains systems involved in
cellular processes other than transport. These families
are characterised by the fact that the ABC subunit is
made up of duplicated, fused ABC modules (ABC2). No
known transmembrane proteins or domains are associated
with these proteins..
Length = 162
Score = 29.2 bits (65), Expect = 4.7
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 446 PIIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTP 484
P +I G GSGKS ++ + L+L +
Sbjct: 13 PNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSA 51
>gnl|CDD|36138 KOG0920, KOG0920, KOG0920, ATP-dependent RNA helicase A [RNA
processing and modification].
Length = 924
Score = 29.1 bits (65), Expect = 5.0
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 447 IIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPK 495
I+ + ++I+G TG GK+ + IL A C +I P+
Sbjct: 181 ILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAA-CNIICTQPR 228
>gnl|CDD|31157 COG0815, Lnt, Apolipoprotein N-acyltransferase [Cell envelope
biogenesis, outer membrane].
Length = 518
Score = 29.2 bits (65), Expect = 5.1
Identities = 19/118 (16%), Positives = 35/118 (29%), Gaps = 2/118 (1%)
Query: 76 DVAIQFFGIASVFFLPPPTMWALSLL-FDKKIYCFSKRATAWLINILVSATFFASFSPSQ 134
+ FG PPP W L+ ++ T+W F F +
Sbjct: 18 LLLALVFGALFALAFPPPDWWWLAWFSLAPLLWLVRGAPTSWEGLAKSGFLFGFGFFLAG 77
Query: 135 SWPIQNGFGGIIGDLIIRLPFLFFESYPRKLGILFFQMILFLAMSWLLIYSSSAIFQG 192
+ + G +G L + LP L L + + + W + + +
Sbjct: 78 FYWLGTSLGVGLGLLAVALPLLVL-LLAAWLALFLLLVAVLTCRLWFALLVVPSAWVA 134
>gnl|CDD|34613 COG5008, PilU, Tfp pilus assembly protein, ATPase PilU [Cell
motility and secretion / Intracellular trafficking and
secretion].
Length = 375
Score = 29.1 bits (65), Expect = 5.1
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 446 PIIADLARMPH--LLIAGTTGSGKSVAINTMI 475
++ DLA ++I G TGSGKS + MI
Sbjct: 117 EVLKDLALAKRGLVIIVGATGSGKSTTMAAMI 148
>gnl|CDD|37866 KOG2655, KOG2655, KOG2655, Septin family protein (P-loop GTPase)
[Cell cycle control, cell division, chromosome
partitioning, Nuclear structure, Intracellular
trafficking, secretion, and vesicular transport].
Length = 366
Score = 29.1 bits (65), Expect = 5.4
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 457 LLIAGTTGSGKSVAINTMILSLLY---RMTPAQCR---LIMIDPKMLELSVYDGIPNLLT 510
L++ G +G GKS IN++ L+ L + A R + I+ +E+ +G+ LT
Sbjct: 24 LMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEI-EENGVKLNLT 82
Query: 511 PVVT 514
+ T
Sbjct: 83 VIDT 86
>gnl|CDD|31829 COG1643, HrpA, HrpA-like helicases [DNA replication, recombination,
and repair].
Length = 845
Score = 28.8 bits (64), Expect = 5.5
Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 447 IIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLE 498
I+ + + ++I G TGSGK+ + +L ++ P+ L
Sbjct: 58 ILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLG---IAGKIGCTQPRRLA 106
>gnl|CDD|146673 pfam04157, EAP30, EAP30/Vps36 family. This family includes EAP30
as well as the Vps36 protein. Vps36 is involved in Golgi
to endosome trafficking. EAP30 is a subunit of the ELL
complex. The ELL is an 80-kDa RNA polymerase II
transcription factor. ELL interacts with three other
proteins to form the complex known as ELL complex. The
ELL complex is capable of increasing that catalytic rate
of transcription elongation, but is unable to repress
initiation of transcription by RNA polymerase II as is
the case of ELL. EAP30 is thought to lead to the
derepression of ELL's transcriptional inhibitory
activity.
Length = 219
Score = 28.8 bits (65), Expect = 6.0
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 756 ASISYIQRRLGIGYNRAASIIENMEEKGVI 785
+ S + +LG RA ++E E++G++
Sbjct: 187 VTASELAEKLGWSIGRAKEVLEKAEKEGLL 216
>gnl|CDD|144909 pfam01490, Aa_trans, Transmembrane amino acid transporter protein.
This transmembrane region is found in many amino acid
transporters including UNC-47 and MTR. UNC-47 encodes a
vesicular amino butyric acid (GABA) transporter, (VGAT).
UNC-47 is predicted to have 10 transmembrane domains.
MTR is a N system amino acid transporter system protein
involved in methyltryptophan resistance. Other members
of this family include proline transporters and amino
acid permeases.
Length = 405
Score = 28.8 bits (65), Expect = 6.2
Identities = 25/178 (14%), Positives = 51/178 (28%), Gaps = 19/178 (10%)
Query: 23 KKKMKIVAGLILLCTVFAITLAL-GTWDVYDPSFSYITLRSPKNFLGYGGAIFADVAIQF 81
K++ I++ TV I + L G + I L P + + +
Sbjct: 226 PPMTKVLLTAIIIVTVLYILVGLVGYLTFGNNVKGNILLNLPNSG-WLIIIANVLLVLHL 284
Query: 82 FGIASVFFLPPPTMWALSLLFDKKIYCFSKRATAWLIN-----ILVSATFFASFSPS--- 133
+ P + +LLF K + L ++V A P
Sbjct: 285 LLSYPLQAFPIRDIV-ENLLFRKGASGKHNPKSKLLRVVIRSGLVVITYLIAISVPFFGD 343
Query: 134 --------QSWPIQNGFGGIIGDLIIRLPFLFFESYPRKLGILFFQMILFLAMSWLLI 183
P+ + + + E +K+ + +I L M++ +
Sbjct: 344 LLSLVGATSGAPLTFILPPLFHLKLKKPKKKSLEWLWKKILDVICIVIGLLLMAYGVA 401
>gnl|CDD|31846 COG1660, COG1660, Predicted P-loop-containing kinase [General
function prediction only].
Length = 286
Score = 28.6 bits (64), Expect = 6.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 454 MPHLLIAGTTGSGKSVAINTM 474
M +++ G +G+GKSVA+ +
Sbjct: 1 MRLVIVTGLSGAGKSVALRVL 21
>gnl|CDD|109212 pfam00146, NADHdh, NADH dehydrogenase.
Length = 309
Score = 28.7 bits (65), Expect = 6.2
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 11/82 (13%)
Query: 118 INILVSATFFASFSPSQSWPIQNGFGGIIGDLIIRLPFLFF------ESYPR----KLGI 167
NI++ + + PI GII +++ LFF SYPR +L
Sbjct: 229 ANIILMSLLTSVLFLGGWLPILPPELGIIW-FVLKTYLLFFLFIWVRASYPRFRYDQLMY 287
Query: 168 LFFQMILFLAMSWLLIYSSSAI 189
L ++ L L+++ LL +S I
Sbjct: 288 LGWKNFLPLSLANLLFTASLLI 309
>gnl|CDD|35277 KOG0054, KOG0054, KOG0054, Multidrug resistance-associated
protein/mitoxantrone resistance protein, ABC superfamily
[Secondary metabolites biosynthesis, transport and
catabolism].
Length = 1381
Score = 28.7 bits (64), Expect = 6.8
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
Query: 459 IAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMID 493
I G TG+GKS I L+R+ I+ID
Sbjct: 1171 IVGRTGAGKSSLILA-----LFRLVEPAEGEILID 1200
>gnl|CDD|100120 cd06181, BI-1-like, BAX inhibitor (BI)-1 like protein family.
Mammalian members of this family of small transmembrane
proteins have been shown to have an antiapoptotic effect
either by stimulating the antiapoptotic function of
Bcl-2, a well characterized oncogene, or inhibiting the
proapoptotic effect of Bax, another member of the Bcl-2
family. Their broad tissue distribution and high degree
of conservation suggests an important regulatory role.
In plants, BI-1 like proteins play a role in pathogen
resistance. A prokaryotic member, E.coli YccA, has been
shown to interact with ATP-dependent protease FtsH,
which degrades abnormal membrane proteins as part of a
quality control mechanism to keep the integrity of
biological membranes..
Length = 212
Score = 28.6 bits (65), Expect = 7.0
Identities = 14/75 (18%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Query: 29 VAGLILLCTVFAITLALGTWDVYDPSFSYITLRSPKNFLGYGGAIFADV-AIQFFGIASV 87
+ ++ + T ++ A G S L + ++F GG +F + + + ++
Sbjct: 85 LGPILSVYTAASVLQAFGITAAVFGGLSLYALTTKRDFSFLGGFLFMGLIVLIVASLVNI 144
Query: 88 FFLPPPTMWALSLLF 102
F P A+S L
Sbjct: 145 FLQSPALQLAISALG 159
>gnl|CDD|28927 cd00046, DEXDc, DEAD-like helicases superfamily. A diverse family
of proteins involved in ATP-dependent RNA or DNA
unwinding. This domain contains the ATP-binding region..
Length = 144
Score = 28.5 bits (63), Expect = 8.2
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYD 503
+L+A TGSGK++A IL LL + Q L++ + L V +
Sbjct: 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQV-LVLAPTRELANQVAE 48
>gnl|CDD|109493 pfam00437, GSPII_E, Type II/IV secretion system protein. This
family contains both type II and type IV pathway
secretion proteins from bacteria. VirB11 ATPase is a
subunit of the Agrobacterium tumefaciens transfer DNA
(T-DNA) transfer system, a type IV secretion pathway
required for delivery of T-DNA and effector proteins to
plant cells during infection.
Length = 283
Score = 28.4 bits (64), Expect = 8.8
Identities = 7/19 (36%), Positives = 14/19 (73%)
Query: 457 LLIAGTTGSGKSVAINTMI 475
+L++G TGSGK+ + ++
Sbjct: 142 ILVSGGTGSGKTTLLYALL 160
>gnl|CDD|35571 KOG0350, KOG0350, KOG0350, DEAD-box ATP-dependent RNA helicase [RNA
processing and modification].
Length = 620
Score = 28.1 bits (62), Expect = 9.3
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 457 LLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDP-KMLELSVYD 503
+ + TGSGK++A I+ LL + R ++I P + L L VYD
Sbjct: 186 ICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYD 233
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.322 0.137 0.398
Gapped
Lambda K H
0.267 0.0748 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 9,727,475
Number of extensions: 545045
Number of successful extensions: 1807
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1795
Number of HSP's successfully gapped: 85
Length of query: 806
Length of database: 6,263,737
Length adjustment: 102
Effective length of query: 704
Effective length of database: 4,059,619
Effective search space: 2857971776
Effective search space used: 2857971776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.2 bits)