BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780799|ref|YP_003065212.1| DNA translocase FtsK [Candidatus Liberibacter asiaticus str. psy62] (806 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780799|ref|YP_003065212.1| DNA translocase FtsK [Candidatus Liberibacter asiaticus str. psy62] Length = 806 Score = 1662 bits (4304), Expect = 0.0, Method: Compositional matrix adjust. Identities = 806/806 (100%), Positives = 806/806 (100%) Query: 1 MSENMSFIISNKNENFLLSDWSKKKMKIVAGLILLCTVFAITLALGTWDVYDPSFSYITL 60 MSENMSFIISNKNENFLLSDWSKKKMKIVAGLILLCTVFAITLALGTWDVYDPSFSYITL Sbjct: 1 MSENMSFIISNKNENFLLSDWSKKKMKIVAGLILLCTVFAITLALGTWDVYDPSFSYITL 60 Query: 61 RSPKNFLGYGGAIFADVAIQFFGIASVFFLPPPTMWALSLLFDKKIYCFSKRATAWLINI 120 RSPKNFLGYGGAIFADVAIQFFGIASVFFLPPPTMWALSLLFDKKIYCFSKRATAWLINI Sbjct: 61 RSPKNFLGYGGAIFADVAIQFFGIASVFFLPPPTMWALSLLFDKKIYCFSKRATAWLINI 120 Query: 121 LVSATFFASFSPSQSWPIQNGFGGIIGDLIIRLPFLFFESYPRKLGILFFQMILFLAMSW 180 LVSATFFASFSPSQSWPIQNGFGGIIGDLIIRLPFLFFESYPRKLGILFFQMILFLAMSW Sbjct: 121 LVSATFFASFSPSQSWPIQNGFGGIIGDLIIRLPFLFFESYPRKLGILFFQMILFLAMSW 180 Query: 181 LLIYSSSAIFQGKRRVPYNMADCLISDESKTQLEDVMASSLLKYLCNMFRVWIGRFLGFA 240 LLIYSSSAIFQGKRRVPYNMADCLISDESKTQLEDVMASSLLKYLCNMFRVWIGRFLGFA Sbjct: 181 LLIYSSSAIFQGKRRVPYNMADCLISDESKTQLEDVMASSLLKYLCNMFRVWIGRFLGFA 240 Query: 241 FFISFVKKCLGDSNISVDDYRKKIEPTLDVSFHDAIDINSITEYQLNADIVQNISQSNLI 300 FFISFVKKCLGDSNISVDDYRKKIEPTLDVSFHDAIDINSITEYQLNADIVQNISQSNLI Sbjct: 241 FFISFVKKCLGDSNISVDDYRKKIEPTLDVSFHDAIDINSITEYQLNADIVQNISQSNLI 300 Query: 301 NHGTGTFVLPSKEILSTSQSPVNQMTFSPKVMQNNACTLKSVLSDFGIQGEIVNVRPGPV 360 NHGTGTFVLPSKEILSTSQSPVNQMTFSPKVMQNNACTLKSVLSDFGIQGEIVNVRPGPV Sbjct: 301 NHGTGTFVLPSKEILSTSQSPVNQMTFSPKVMQNNACTLKSVLSDFGIQGEIVNVRPGPV 360 Query: 361 ITLYELEPAPGIKSSRIIGLSDDIARSMSAISARVAVIPRRNAIGIELPNDIRETVMLRD 420 ITLYELEPAPGIKSSRIIGLSDDIARSMSAISARVAVIPRRNAIGIELPNDIRETVMLRD Sbjct: 361 ITLYELEPAPGIKSSRIIGLSDDIARSMSAISARVAVIPRRNAIGIELPNDIRETVMLRD 420 Query: 421 LIVSRVFEKNQCDLAINLGKSIEGKPIIADLARMPHLLIAGTTGSGKSVAINTMILSLLY 480 LIVSRVFEKNQCDLAINLGKSIEGKPIIADLARMPHLLIAGTTGSGKSVAINTMILSLLY Sbjct: 421 LIVSRVFEKNQCDLAINLGKSIEGKPIIADLARMPHLLIAGTTGSGKSVAINTMILSLLY 480 Query: 481 RMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEMEERYQKMSKI 540 RMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEMEERYQKMSKI Sbjct: 481 RMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEMEERYQKMSKI 540 Query: 541 GVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMA 600 GVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMA Sbjct: 541 GVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMA 600 Query: 601 DLMMVARKDIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRISFQVSSKI 660 DLMMVARKDIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRISFQVSSKI Sbjct: 601 DLMMVARKDIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRISFQVSSKI 660 Query: 661 DSRTILGEQGAEQLLGQGDMLYMTGGGRVQRIHGPFVSDIEVEKVVSHLKTQGEAKYIDI 720 DSRTILGEQGAEQLLGQGDMLYMTGGGRVQRIHGPFVSDIEVEKVVSHLKTQGEAKYIDI Sbjct: 661 DSRTILGEQGAEQLLGQGDMLYMTGGGRVQRIHGPFVSDIEVEKVVSHLKTQGEAKYIDI 720 Query: 721 KDKILLNEEMRFSENSSVADDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENME 780 KDKILLNEEMRFSENSSVADDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENME Sbjct: 721 KDKILLNEEMRFSENSSVADDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENME 780 Query: 781 EKGVIGPASSTGKREILISSMEECHE 806 EKGVIGPASSTGKREILISSMEECHE Sbjct: 781 EKGVIGPASSTGKREILISSMEECHE 806 >gi|254780606|ref|YP_003065019.1| cell division protein [Candidatus Liberibacter asiaticus str. psy62] Length = 744 Score = 615 bits (1587), Expect = e-178, Method: Compositional matrix adjust. Identities = 311/528 (58%), Positives = 396/528 (75%), Gaps = 30/528 (5%) Query: 273 HDAIDINSITEYQLNADIVQNISQSNLINHGTGTFVLPSKEILSTSQSPVNQMTFSPKVM 332 H N++TE+ + Q+ SQ I G + P L QS VN + +++ Sbjct: 239 HKPSSSNTMTEH-----MFQDTSQE--IAKGQKQYEQPCSSFLQV-QSNVNLQGITHEIL 290 Query: 333 QNNACTLKSVLSDFGIQGEIVNVRPGPVITLYELEPAPGIKSSRIIGLSDDIARSMSAIS 392 + NA +L+++L +FGI+GEI+NV PGPV+TLYE EPAPGIKSSR+IGL+DDIARSMS++S Sbjct: 291 EKNAGSLETILEEFGIKGEIINVNPGPVVTLYEFEPAPGIKSSRVIGLADDIARSMSSLS 350 Query: 393 ARVAVIPRRNAIGIELPNDIRETVMLRDLIVSRVFEKNQCDLAINLGKSIEGKPIIADLA 452 ARVAVIP+RNAIGIELPN+ RETV LR +I SR F ++ +LA+ LGK+I G+ +IADLA Sbjct: 351 ARVAVIPKRNAIGIELPNETRETVYLRQIIESRSFSHSKANLALCLGKTISGESVIADLA 410 Query: 453 RMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPV 512 MPH+L+AGTTGSGKSVAINTMI+SLLYR+ P +CR+IM+DPKMLELSVYDGIP+LLTPV Sbjct: 411 NMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPV 470 Query: 513 VTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDR 572 VTNP+KAV LKW V EMEERY+KMS + VRNI +N +++ + G+K + Sbjct: 471 VTNPKKAVMALKWAVREMEERYRKMSHLSVRNIKSYNERISTMY--GEK---------PQ 519 Query: 573 KTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVARKDIESAVQRLAQMARASGIHVIMAT 632 G+ D + MPYIV+++DEMADLMMVA K+IE A+QRLAQMARA+GIH+IMAT Sbjct: 520 GCGD--------DMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMAT 571 Query: 633 QRPSVDVITGTIKANFPTRISFQVSSKIDSRTILGEQGAEQLLGQGDMLYMTGGGRVQRI 692 QRPSVDVITGTIKANFP RISFQV+SKIDSRTILGE GAEQLLG+GDMLYM+GGGR+QR+ Sbjct: 572 QRPSVDVITGTIKANFPIRISFQVTSKIDSRTILGEHGAEQLLGRGDMLYMSGGGRIQRV 631 Query: 693 HGPFVSDIEVEKVVSHLKTQGEAKYIDIKDKILLNEEM--RF-SENSSVADDLYKQAVDI 749 HGP VSDIE+EKVV HLK QG +Y++ ++ F SE +LY +AVD+ Sbjct: 632 HGPLVSDIEIEKVVQHLKKQGCPEYLNTVTTDTDTDKDGNNFDSEEKKERSNLYAKAVDL 691 Query: 750 VLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPASSTGKREIL 797 V+ + + S S+IQRRL IGYNRAA ++E ME++G++ A GKR + Sbjct: 692 VIDNQRCSTSFIQRRLQIGYNRAALLVERMEQEGLVSEADHVGKRHVF 739 >gi|255764496|ref|YP_003065012.2| excinuclease ABC subunit C [Candidatus Liberibacter asiaticus str. psy62] Length = 616 Score = 28.9 bits (63), Expect = 0.35, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 5/84 (5%) Query: 688 RVQRIHGPFVSDIEVEKVVSHLKTQGEAKYIDIKDKILLNEEMRFSENSSVADDLYKQAV 747 +++R GP +I EK + + EAK L E++ + N + + Y+ A Sbjct: 163 QIKRCSGPCTGEISSEKYMEFVH---EAKKFLSGGNHNLKEKIARNMNQATLKEDYESA- 218 Query: 748 DIVLRDNKASISYIQRRLGIGYNR 771 I+ RD A++S+IQ YNR Sbjct: 219 -IIHRDRLAALSHIQNHNDSIYNR 241 >gi|254780601|ref|YP_003065014.1| ATP-dependent RNA helicase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 573 Score = 28.9 bits (63), Expect = 0.38, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 4/56 (7%) Query: 453 RMPHLLIAGTTGSGKSVAINTMILSLLY----RMTPAQCRLIMIDPKMLELSVYDG 504 R +L++ TGSGK+VA + S L R +PA L + EL+V G Sbjct: 36 REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVG 91 >gi|255764514|ref|YP_003065586.2| DNA repair protein RecN [Candidatus Liberibacter asiaticus str. psy62] Length = 554 Score = 26.2 bits (56), Expect = 2.5, Method: Compositional matrix adjust. Identities = 9/19 (47%), Positives = 16/19 (84%) Query: 458 LIAGTTGSGKSVAINTMIL 476 +++G TGSGKS+ ++ +IL Sbjct: 25 ILSGDTGSGKSILLDALIL 43 >gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer [Candidatus Liberibacter asiaticus str. psy62] Length = 1828 Score = 25.8 bits (55), Expect = 2.6, Method: Compositional matrix adjust. Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 3/77 (3%) Query: 313 EILSTSQSPVNQMT--FSPKVMQNNACTLKSVL-SDFGIQGEIVNVRPGPVITLYELEPA 369 +++ S+ ++Q T S +++QNN ++ S ++GEIV++ + T LE Sbjct: 1110 KVMEISEKRISQRTQEISQQLLQNNDVITNQIIDSTSRVRGEIVDISNKFIETSRVLEQR 1169 Query: 370 PGIKSSRIIGLSDDIAR 386 S + SD+I+R Sbjct: 1170 EEKFHSALDSFSDNISR 1186 >gi|254780724|ref|YP_003065137.1| component of type IV pilus [Candidatus Liberibacter asiaticus str. psy62] Length = 483 Score = 25.4 bits (54), Expect = 3.5, Method: Compositional matrix adjust. Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 4/54 (7%) Query: 425 RVFEKNQC--DLAINLGK-SIEGKPIIADLARMP-HLLIAGTTGSGKSVAINTM 474 R F+K++ D ++ G + EG ++ + R+ ++LI+G TGSGK+ +N + Sbjct: 217 RKFKKDKLTLDHLVSFGAVTAEGARLLQIIGRIRCNVLISGGTGSGKTTLLNCL 270 >gi|254780916|ref|YP_003065329.1| putative sigma-54-dependent transcription regulator protein [Candidatus Liberibacter asiaticus str. psy62] Length = 482 Score = 25.0 bits (53), Expect = 4.4, Method: Compositional matrix adjust. Identities = 10/28 (35%), Positives = 19/28 (67%) Query: 741 DLYKQAVDIVLRDNKASISYIQRRLGIG 768 D+ K+ + + ++ +A +S + RRLGIG Sbjct: 437 DIEKEIIGLAMKLYRAQMSEVARRLGIG 464 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.322 0.137 0.398 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 504,012 Number of Sequences: 1233 Number of extensions: 21144 Number of successful extensions: 84 Number of sequences better than 100.0: 13 Number of HSP's better than 100.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 73 Number of HSP's gapped (non-prelim): 15 length of query: 806 length of database: 328,796 effective HSP length: 81 effective length of query: 725 effective length of database: 228,923 effective search space: 165969175 effective search space used: 165969175 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 42 (20.8 bits)