BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780799|ref|YP_003065212.1| DNA translocase FtsK
[Candidatus Liberibacter asiaticus str. psy62]
         (806 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780799|ref|YP_003065212.1| DNA translocase FtsK [Candidatus Liberibacter asiaticus str. psy62]
          Length = 806

 Score = 1662 bits (4304), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 806/806 (100%), Positives = 806/806 (100%)

Query: 1   MSENMSFIISNKNENFLLSDWSKKKMKIVAGLILLCTVFAITLALGTWDVYDPSFSYITL 60
           MSENMSFIISNKNENFLLSDWSKKKMKIVAGLILLCTVFAITLALGTWDVYDPSFSYITL
Sbjct: 1   MSENMSFIISNKNENFLLSDWSKKKMKIVAGLILLCTVFAITLALGTWDVYDPSFSYITL 60

Query: 61  RSPKNFLGYGGAIFADVAIQFFGIASVFFLPPPTMWALSLLFDKKIYCFSKRATAWLINI 120
           RSPKNFLGYGGAIFADVAIQFFGIASVFFLPPPTMWALSLLFDKKIYCFSKRATAWLINI
Sbjct: 61  RSPKNFLGYGGAIFADVAIQFFGIASVFFLPPPTMWALSLLFDKKIYCFSKRATAWLINI 120

Query: 121 LVSATFFASFSPSQSWPIQNGFGGIIGDLIIRLPFLFFESYPRKLGILFFQMILFLAMSW 180
           LVSATFFASFSPSQSWPIQNGFGGIIGDLIIRLPFLFFESYPRKLGILFFQMILFLAMSW
Sbjct: 121 LVSATFFASFSPSQSWPIQNGFGGIIGDLIIRLPFLFFESYPRKLGILFFQMILFLAMSW 180

Query: 181 LLIYSSSAIFQGKRRVPYNMADCLISDESKTQLEDVMASSLLKYLCNMFRVWIGRFLGFA 240
           LLIYSSSAIFQGKRRVPYNMADCLISDESKTQLEDVMASSLLKYLCNMFRVWIGRFLGFA
Sbjct: 181 LLIYSSSAIFQGKRRVPYNMADCLISDESKTQLEDVMASSLLKYLCNMFRVWIGRFLGFA 240

Query: 241 FFISFVKKCLGDSNISVDDYRKKIEPTLDVSFHDAIDINSITEYQLNADIVQNISQSNLI 300
           FFISFVKKCLGDSNISVDDYRKKIEPTLDVSFHDAIDINSITEYQLNADIVQNISQSNLI
Sbjct: 241 FFISFVKKCLGDSNISVDDYRKKIEPTLDVSFHDAIDINSITEYQLNADIVQNISQSNLI 300

Query: 301 NHGTGTFVLPSKEILSTSQSPVNQMTFSPKVMQNNACTLKSVLSDFGIQGEIVNVRPGPV 360
           NHGTGTFVLPSKEILSTSQSPVNQMTFSPKVMQNNACTLKSVLSDFGIQGEIVNVRPGPV
Sbjct: 301 NHGTGTFVLPSKEILSTSQSPVNQMTFSPKVMQNNACTLKSVLSDFGIQGEIVNVRPGPV 360

Query: 361 ITLYELEPAPGIKSSRIIGLSDDIARSMSAISARVAVIPRRNAIGIELPNDIRETVMLRD 420
           ITLYELEPAPGIKSSRIIGLSDDIARSMSAISARVAVIPRRNAIGIELPNDIRETVMLRD
Sbjct: 361 ITLYELEPAPGIKSSRIIGLSDDIARSMSAISARVAVIPRRNAIGIELPNDIRETVMLRD 420

Query: 421 LIVSRVFEKNQCDLAINLGKSIEGKPIIADLARMPHLLIAGTTGSGKSVAINTMILSLLY 480
           LIVSRVFEKNQCDLAINLGKSIEGKPIIADLARMPHLLIAGTTGSGKSVAINTMILSLLY
Sbjct: 421 LIVSRVFEKNQCDLAINLGKSIEGKPIIADLARMPHLLIAGTTGSGKSVAINTMILSLLY 480

Query: 481 RMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEMEERYQKMSKI 540
           RMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEMEERYQKMSKI
Sbjct: 481 RMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEMEERYQKMSKI 540

Query: 541 GVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMA 600
           GVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMA
Sbjct: 541 GVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMA 600

Query: 601 DLMMVARKDIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRISFQVSSKI 660
           DLMMVARKDIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRISFQVSSKI
Sbjct: 601 DLMMVARKDIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRISFQVSSKI 660

Query: 661 DSRTILGEQGAEQLLGQGDMLYMTGGGRVQRIHGPFVSDIEVEKVVSHLKTQGEAKYIDI 720
           DSRTILGEQGAEQLLGQGDMLYMTGGGRVQRIHGPFVSDIEVEKVVSHLKTQGEAKYIDI
Sbjct: 661 DSRTILGEQGAEQLLGQGDMLYMTGGGRVQRIHGPFVSDIEVEKVVSHLKTQGEAKYIDI 720

Query: 721 KDKILLNEEMRFSENSSVADDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENME 780
           KDKILLNEEMRFSENSSVADDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENME
Sbjct: 721 KDKILLNEEMRFSENSSVADDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENME 780

Query: 781 EKGVIGPASSTGKREILISSMEECHE 806
           EKGVIGPASSTGKREILISSMEECHE
Sbjct: 781 EKGVIGPASSTGKREILISSMEECHE 806


>gi|254780606|ref|YP_003065019.1| cell division protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 744

 Score =  615 bits (1587), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 311/528 (58%), Positives = 396/528 (75%), Gaps = 30/528 (5%)

Query: 273 HDAIDINSITEYQLNADIVQNISQSNLINHGTGTFVLPSKEILSTSQSPVNQMTFSPKVM 332
           H     N++TE+     + Q+ SQ   I  G   +  P    L   QS VN    + +++
Sbjct: 239 HKPSSSNTMTEH-----MFQDTSQE--IAKGQKQYEQPCSSFLQV-QSNVNLQGITHEIL 290

Query: 333 QNNACTLKSVLSDFGIQGEIVNVRPGPVITLYELEPAPGIKSSRIIGLSDDIARSMSAIS 392
           + NA +L+++L +FGI+GEI+NV PGPV+TLYE EPAPGIKSSR+IGL+DDIARSMS++S
Sbjct: 291 EKNAGSLETILEEFGIKGEIINVNPGPVVTLYEFEPAPGIKSSRVIGLADDIARSMSSLS 350

Query: 393 ARVAVIPRRNAIGIELPNDIRETVMLRDLIVSRVFEKNQCDLAINLGKSIEGKPIIADLA 452
           ARVAVIP+RNAIGIELPN+ RETV LR +I SR F  ++ +LA+ LGK+I G+ +IADLA
Sbjct: 351 ARVAVIPKRNAIGIELPNETRETVYLRQIIESRSFSHSKANLALCLGKTISGESVIADLA 410

Query: 453 RMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPV 512
            MPH+L+AGTTGSGKSVAINTMI+SLLYR+ P +CR+IM+DPKMLELSVYDGIP+LLTPV
Sbjct: 411 NMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPV 470

Query: 513 VTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDR 572
           VTNP+KAV  LKW V EMEERY+KMS + VRNI  +N +++  +  G+K          +
Sbjct: 471 VTNPKKAVMALKWAVREMEERYRKMSHLSVRNIKSYNERISTMY--GEK---------PQ 519

Query: 573 KTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVARKDIESAVQRLAQMARASGIHVIMAT 632
             G+        D + MPYIV+++DEMADLMMVA K+IE A+QRLAQMARA+GIH+IMAT
Sbjct: 520 GCGD--------DMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMAT 571

Query: 633 QRPSVDVITGTIKANFPTRISFQVSSKIDSRTILGEQGAEQLLGQGDMLYMTGGGRVQRI 692
           QRPSVDVITGTIKANFP RISFQV+SKIDSRTILGE GAEQLLG+GDMLYM+GGGR+QR+
Sbjct: 572 QRPSVDVITGTIKANFPIRISFQVTSKIDSRTILGEHGAEQLLGRGDMLYMSGGGRIQRV 631

Query: 693 HGPFVSDIEVEKVVSHLKTQGEAKYIDIKDKILLNEEM--RF-SENSSVADDLYKQAVDI 749
           HGP VSDIE+EKVV HLK QG  +Y++        ++    F SE      +LY +AVD+
Sbjct: 632 HGPLVSDIEIEKVVQHLKKQGCPEYLNTVTTDTDTDKDGNNFDSEEKKERSNLYAKAVDL 691

Query: 750 VLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPASSTGKREIL 797
           V+ + + S S+IQRRL IGYNRAA ++E ME++G++  A   GKR + 
Sbjct: 692 VIDNQRCSTSFIQRRLQIGYNRAALLVERMEQEGLVSEADHVGKRHVF 739


>gi|255764496|ref|YP_003065012.2| excinuclease ABC subunit C [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 616

 Score = 28.9 bits (63), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 5/84 (5%)

Query: 688 RVQRIHGPFVSDIEVEKVVSHLKTQGEAKYIDIKDKILLNEEMRFSENSSVADDLYKQAV 747
           +++R  GP   +I  EK +  +    EAK         L E++  + N +   + Y+ A 
Sbjct: 163 QIKRCSGPCTGEISSEKYMEFVH---EAKKFLSGGNHNLKEKIARNMNQATLKEDYESA- 218

Query: 748 DIVLRDNKASISYIQRRLGIGYNR 771
            I+ RD  A++S+IQ      YNR
Sbjct: 219 -IIHRDRLAALSHIQNHNDSIYNR 241


>gi|254780601|ref|YP_003065014.1| ATP-dependent RNA helicase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 573

 Score = 28.9 bits (63), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 453 RMPHLLIAGTTGSGKSVAINTMILSLLY----RMTPAQCRLIMIDPKMLELSVYDG 504
           R   +L++  TGSGK+VA    + S L     R +PA   L +      EL+V  G
Sbjct: 36  REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVG 91


>gi|255764514|ref|YP_003065586.2| DNA repair protein RecN [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 554

 Score = 26.2 bits (56), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 9/19 (47%), Positives = 16/19 (84%)

Query: 458 LIAGTTGSGKSVAINTMIL 476
           +++G TGSGKS+ ++ +IL
Sbjct: 25  ILSGDTGSGKSILLDALIL 43


>gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer [Candidatus Liberibacter asiaticus str.
            psy62]
          Length = 1828

 Score = 25.8 bits (55), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 3/77 (3%)

Query: 313  EILSTSQSPVNQMT--FSPKVMQNNACTLKSVL-SDFGIQGEIVNVRPGPVITLYELEPA 369
            +++  S+  ++Q T   S +++QNN      ++ S   ++GEIV++    + T   LE  
Sbjct: 1110 KVMEISEKRISQRTQEISQQLLQNNDVITNQIIDSTSRVRGEIVDISNKFIETSRVLEQR 1169

Query: 370  PGIKSSRIIGLSDDIAR 386
                 S +   SD+I+R
Sbjct: 1170 EEKFHSALDSFSDNISR 1186


>gi|254780724|ref|YP_003065137.1| component of type IV pilus [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 483

 Score = 25.4 bits (54), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 4/54 (7%)

Query: 425 RVFEKNQC--DLAINLGK-SIEGKPIIADLARMP-HLLIAGTTGSGKSVAINTM 474
           R F+K++   D  ++ G  + EG  ++  + R+  ++LI+G TGSGK+  +N +
Sbjct: 217 RKFKKDKLTLDHLVSFGAVTAEGARLLQIIGRIRCNVLISGGTGSGKTTLLNCL 270


>gi|254780916|ref|YP_003065329.1| putative sigma-54-dependent transcription regulator protein
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 482

 Score = 25.0 bits (53), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 19/28 (67%)

Query: 741 DLYKQAVDIVLRDNKASISYIQRRLGIG 768
           D+ K+ + + ++  +A +S + RRLGIG
Sbjct: 437 DIEKEIIGLAMKLYRAQMSEVARRLGIG 464


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.322    0.137    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 504,012
Number of Sequences: 1233
Number of extensions: 21144
Number of successful extensions: 84
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 73
Number of HSP's gapped (non-prelim): 15
length of query: 806
length of database: 328,796
effective HSP length: 81
effective length of query: 725
effective length of database: 228,923
effective search space: 165969175
effective search space used: 165969175
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 42 (20.8 bits)