RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780800|ref|YP_003065213.1| hypothetical protein
CLIBASIA_03455 [Candidatus Liberibacter asiaticus str. psy62]
         (192 letters)



>gnl|CDD|33613 COG3820, COG3820, Uncharacterized protein conserved in bacteria
           [Function unknown].
          Length = 230

 Score =  261 bits (669), Expect = 6e-71
 Identities = 124/178 (69%), Positives = 146/178 (82%), Gaps = 1/178 (0%)

Query: 1   MCQRPLMPKASAVWLIDNTSLSFDQIAEFCGLHLLEVMAIADGESLQGIKGFNLISSGQL 60
           M  + LMPKA+AVWL+DNTSLSFDQIA+FCGLH LEV  IADGE  QGIKG + I++GQL
Sbjct: 1   MATQLLMPKATAVWLVDNTSLSFDQIADFCGLHPLEVKGIADGEVAQGIKGLDPIANGQL 60

Query: 61  SAEEIALGEKDKNYKLKI-SKPKSYILESTKKKKRYTPVSKRQDRPNAILWLIRNYPRLK 119
           + EEIA  EKD NY+LKI S PK  + ES KK  RYTPVS+RQDRP+AILWL+RN+P LK
Sbjct: 61  TREEIARAEKDPNYRLKILSSPKVELPESKKKGPRYTPVSRRQDRPDAILWLLRNHPELK 120

Query: 120 DAQISHLVGTTGSTIEQIRNRTHWNTANLVPMDPVTLGLCAQIDLDREIEKCSKNTEA 177
           DAQIS L+GTT STIEQIR RTHWN+AN+ PMDPVTLGLC+QIDLD+E+E+ S+    
Sbjct: 121 DAQISKLIGTTKSTIEQIRTRTHWNSANITPMDPVTLGLCSQIDLDKEVERASRGRPT 178


>gnl|CDD|36212 KOG0994, KOG0994, KOG0994, Extracellular matrix glycoprotein
           Laminin subunit beta [Extracellular structures].
          Length = 1758

 Score = 35.5 bits (81), Expect = 0.009
 Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 7/77 (9%)

Query: 91  KKKRYTPVSKRQDRPNAILWLIRNYPRLKDAQISHLVGTTGSTIEQIRNRTHWNTANLVP 150
           K +RY  VS  QD+        R YP       SH +    S+    RN T W + N V 
Sbjct: 61  KPERYCIVSHLQDQKKCFKCDSR-YPHKAHLNPSHRIENVVSSFAPPRNITWWQSENGVE 119

Query: 151 MDPVTLGLCAQIDLDRE 167
              VT+    Q+DL+ E
Sbjct: 120 --NVTI----QLDLEAE 130


>gnl|CDD|35587 KOG0366, KOG0366, KOG0366, Protein geranylgeranyltransferase type
           II, beta subunit [Posttranslational modification,
           protein turnover, chaperones].
          Length = 329

 Score = 27.9 bits (62), Expect = 1.6
 Identities = 13/43 (30%), Positives = 16/43 (37%)

Query: 68  GEKDKNYKLKISKPKSYILESTKKKKRYTPVSKRQDRPNAILW 110
            EKD   +L   K   YI    KKK  +        R + I W
Sbjct: 10  EEKDAPDELLKDKHARYIESYGKKKDSFEYCLTEHLRMSGIYW 52


>gnl|CDD|36156 KOG0938, KOG0938, KOG0938, Adaptor complexes medium subunit family
           [Intracellular trafficking, secretion, and vesicular
           transport].
          Length = 446

 Score = 26.8 bits (59), Expect = 4.1
 Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 9/64 (14%)

Query: 76  LKISKPKSYI---LESTKKKKRYTPVSKRQDRPNAILWLIRNYPRLKDAQISHLVGTTGS 132
           ++I  P + +   +  +  K +Y P        NAI+W I  +  L ++ +S  V  + +
Sbjct: 335 VRIPVPPNTVKCNISVSNGKAKYVP------SENAIVWKINKFNGLTESTLSAEVELSDT 388

Query: 133 TIEQ 136
           T  +
Sbjct: 389 TQNK 392


>gnl|CDD|48176 cd02013, TPP_Xsc_like, Thiamine pyrophosphate (TPP) family,
           Xsc-like subfamily, TPP-binding module; composed of
           proteins similar to Alcaligenes defragrans
           sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a
           key role in the degradation of taurine, catalyzing the
           desulfonation of 2-sulfoacetaldehyde into sulfite and
           acetyl phosphate. This enzyme requires TPP and divalent
           metal ions for activity..
          Length = 196

 Score = 26.8 bits (59), Expect = 4.2
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 20  SLSFDQIAEFCGLHLLEVMAIAD-GESLQGIKGFNLISSGQLSAEEIAL 67
           S SF +IAE CG   + V    D G +LQ  K   +++ G+ +  EI  
Sbjct: 132 SESFAKIAEACGAKGITVDKPEDVGPALQ--KAIAMMAEGKTTVIEIVC 178


>gnl|CDD|34583 COG4977, COG4977, Transcriptional regulator containing an amidase
           domain and an AraC-type DNA-binding HTH domain
           [Transcription].
          Length = 328

 Score = 26.0 bits (57), Expect = 5.9
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 12  AVWLIDNTSLSFDQIAEFCGLH 33
           A  L++ T LS  +IA  CG  
Sbjct: 277 ARRLLEQTRLSIAEIAVACGFS 298


>gnl|CDD|33713 COG3931, COG3931, Predicted N-formylglutamate amidohydrolase [Amino
           acid transport and metabolism].
          Length = 263

 Score = 26.0 bits (57), Expect = 6.5
 Identities = 15/40 (37%), Positives = 20/40 (50%)

Query: 95  YTPVSKRQDRPNAILWLIRNYPRLKDAQISHLVGTTGSTI 134
           +TPV K + RP  I  L  N  RL D  ++ L    G T+
Sbjct: 153 FTPVYKGRPRPWHIGILHDNDDRLADPLLAALRANAGLTV 192


>gnl|CDD|37496 KOG2285, KOG2285, KOG2285, E3 ubiquitin ligase, Cullin 1 component
           [Posttranslational modification, protein turnover,
           chaperones].
          Length = 777

 Score = 25.8 bits (56), Expect = 8.4
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 36  EVMAIADGESLQGIKGFNLISSGQLSAEEIALGEKDKNYKLKISKPKSYILESTKKKKRY 95
           E   + +G+S Q  K  NLI   QLS E  A  E +   +L+I + +  I++  K +K Y
Sbjct: 668 EFNVVKNGKSQQRGK-VNLIGRLQLSTERNAEEENESIVQLRILRTQEAIIKIMKTRKTY 726

Query: 96  T 96
           T
Sbjct: 727 T 727


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.316    0.132    0.383 

Gapped
Lambda     K      H
   0.267   0.0813    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,228,806
Number of extensions: 104806
Number of successful extensions: 220
Number of sequences better than 10.0: 1
Number of HSP's gapped: 219
Number of HSP's successfully gapped: 18
Length of query: 192
Length of database: 6,263,737
Length adjustment: 89
Effective length of query: 103
Effective length of database: 4,340,536
Effective search space: 447075208
Effective search space used: 447075208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (24.8 bits)