RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780800|ref|YP_003065213.1| hypothetical protein CLIBASIA_03455 [Candidatus Liberibacter asiaticus str. psy62] (192 letters) >gnl|CDD|33613 COG3820, COG3820, Uncharacterized protein conserved in bacteria [Function unknown]. Length = 230 Score = 261 bits (669), Expect = 6e-71 Identities = 124/178 (69%), Positives = 146/178 (82%), Gaps = 1/178 (0%) Query: 1 MCQRPLMPKASAVWLIDNTSLSFDQIAEFCGLHLLEVMAIADGESLQGIKGFNLISSGQL 60 M + LMPKA+AVWL+DNTSLSFDQIA+FCGLH LEV IADGE QGIKG + I++GQL Sbjct: 1 MATQLLMPKATAVWLVDNTSLSFDQIADFCGLHPLEVKGIADGEVAQGIKGLDPIANGQL 60 Query: 61 SAEEIALGEKDKNYKLKI-SKPKSYILESTKKKKRYTPVSKRQDRPNAILWLIRNYPRLK 119 + EEIA EKD NY+LKI S PK + ES KK RYTPVS+RQDRP+AILWL+RN+P LK Sbjct: 61 TREEIARAEKDPNYRLKILSSPKVELPESKKKGPRYTPVSRRQDRPDAILWLLRNHPELK 120 Query: 120 DAQISHLVGTTGSTIEQIRNRTHWNTANLVPMDPVTLGLCAQIDLDREIEKCSKNTEA 177 DAQIS L+GTT STIEQIR RTHWN+AN+ PMDPVTLGLC+QIDLD+E+E+ S+ Sbjct: 121 DAQISKLIGTTKSTIEQIRTRTHWNSANITPMDPVTLGLCSQIDLDKEVERASRGRPT 178 >gnl|CDD|36212 KOG0994, KOG0994, KOG0994, Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]. Length = 1758 Score = 35.5 bits (81), Expect = 0.009 Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 7/77 (9%) Query: 91 KKKRYTPVSKRQDRPNAILWLIRNYPRLKDAQISHLVGTTGSTIEQIRNRTHWNTANLVP 150 K +RY VS QD+ R YP SH + S+ RN T W + N V Sbjct: 61 KPERYCIVSHLQDQKKCFKCDSR-YPHKAHLNPSHRIENVVSSFAPPRNITWWQSENGVE 119 Query: 151 MDPVTLGLCAQIDLDRE 167 VT+ Q+DL+ E Sbjct: 120 --NVTI----QLDLEAE 130 >gnl|CDD|35587 KOG0366, KOG0366, KOG0366, Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]. Length = 329 Score = 27.9 bits (62), Expect = 1.6 Identities = 13/43 (30%), Positives = 16/43 (37%) Query: 68 GEKDKNYKLKISKPKSYILESTKKKKRYTPVSKRQDRPNAILW 110 EKD +L K YI KKK + R + I W Sbjct: 10 EEKDAPDELLKDKHARYIESYGKKKDSFEYCLTEHLRMSGIYW 52 >gnl|CDD|36156 KOG0938, KOG0938, KOG0938, Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport]. Length = 446 Score = 26.8 bits (59), Expect = 4.1 Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 9/64 (14%) Query: 76 LKISKPKSYI---LESTKKKKRYTPVSKRQDRPNAILWLIRNYPRLKDAQISHLVGTTGS 132 ++I P + + + + K +Y P NAI+W I + L ++ +S V + + Sbjct: 335 VRIPVPPNTVKCNISVSNGKAKYVP------SENAIVWKINKFNGLTESTLSAEVELSDT 388 Query: 133 TIEQ 136 T + Sbjct: 389 TQNK 392 >gnl|CDD|48176 cd02013, TPP_Xsc_like, Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.. Length = 196 Score = 26.8 bits (59), Expect = 4.2 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%) Query: 20 SLSFDQIAEFCGLHLLEVMAIAD-GESLQGIKGFNLISSGQLSAEEIAL 67 S SF +IAE CG + V D G +LQ K +++ G+ + EI Sbjct: 132 SESFAKIAEACGAKGITVDKPEDVGPALQ--KAIAMMAEGKTTVIEIVC 178 >gnl|CDD|34583 COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]. Length = 328 Score = 26.0 bits (57), Expect = 5.9 Identities = 9/22 (40%), Positives = 12/22 (54%) Query: 12 AVWLIDNTSLSFDQIAEFCGLH 33 A L++ T LS +IA CG Sbjct: 277 ARRLLEQTRLSIAEIAVACGFS 298 >gnl|CDD|33713 COG3931, COG3931, Predicted N-formylglutamate amidohydrolase [Amino acid transport and metabolism]. Length = 263 Score = 26.0 bits (57), Expect = 6.5 Identities = 15/40 (37%), Positives = 20/40 (50%) Query: 95 YTPVSKRQDRPNAILWLIRNYPRLKDAQISHLVGTTGSTI 134 +TPV K + RP I L N RL D ++ L G T+ Sbjct: 153 FTPVYKGRPRPWHIGILHDNDDRLADPLLAALRANAGLTV 192 >gnl|CDD|37496 KOG2285, KOG2285, KOG2285, E3 ubiquitin ligase, Cullin 1 component [Posttranslational modification, protein turnover, chaperones]. Length = 777 Score = 25.8 bits (56), Expect = 8.4 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 36 EVMAIADGESLQGIKGFNLISSGQLSAEEIALGEKDKNYKLKISKPKSYILESTKKKKRY 95 E + +G+S Q K NLI QLS E A E + +L+I + + I++ K +K Y Sbjct: 668 EFNVVKNGKSQQRGK-VNLIGRLQLSTERNAEEENESIVQLRILRTQEAIIKIMKTRKTY 726 Query: 96 T 96 T Sbjct: 727 T 727 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.316 0.132 0.383 Gapped Lambda K H 0.267 0.0813 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 2,228,806 Number of extensions: 104806 Number of successful extensions: 220 Number of sequences better than 10.0: 1 Number of HSP's gapped: 219 Number of HSP's successfully gapped: 18 Length of query: 192 Length of database: 6,263,737 Length adjustment: 89 Effective length of query: 103 Effective length of database: 4,340,536 Effective search space: 447075208 Effective search space used: 447075208 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 55 (24.8 bits)