RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780800|ref|YP_003065213.1| hypothetical protein
CLIBASIA_03455 [Candidatus Liberibacter asiaticus str. psy62]
         (192 letters)



>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed
           frog (Xenopus laevis) [TaxId: 8355]}
          Length = 107

 Score = 26.5 bits (57), Expect = 1.7
 Identities = 10/57 (17%), Positives = 20/57 (35%)

Query: 136 QIRNRTHWNTANLVPMDPVTLGLCAQIDLDREIEKCSKNTEAKYNKAVDDISTPFSS 192
           ++      + A  + ++     +    +LDRE E    NT        DD  +  + 
Sbjct: 40  KLSYFIGNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTG 96


>d1uf2a_ e.28.1.2 (A:) RDV p3 {Rice dwarf virus [TaxId: 10991]}
          Length = 967

 Score = 25.3 bits (55), Expect = 3.1
 Identities = 16/78 (20%), Positives = 35/78 (44%), Gaps = 8/78 (10%)

Query: 16  IDNTSLSFDQIAEFCGLHLLEVMAIADGESLQGIKGFNLISSGQLSAEEIALGEKDKNYK 75
           +DNTS +      F GL      +I+  E ++ + G ++ + G++ A ++ +  K   + 
Sbjct: 779 VDNTSYTDSLSDMFNGLR-----SISSSEFVRSVNGRSVFTEGRIDAIKVNMRAK---FD 830

Query: 76  LKISKPKSYILESTKKKK 93
           L+    +    +    KK
Sbjct: 831 LQFITEEGGYSKPPNVKK 848


>d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain
           {Escherichia coli [TaxId: 562]}
          Length = 70

 Score = 25.1 bits (55), Expect = 4.3
 Identities = 7/32 (21%), Positives = 13/32 (40%)

Query: 106 NAILWLIRNYPRLKDAQISHLVGTTGSTIEQI 137
            A+  LI     +    +S L     ++I +I
Sbjct: 8   GAVYRLIDQLGPVSRIDLSRLAQLAPASITKI 39


>d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007
           N-terminal domain {Vibrio cholerae [TaxId: 666]}
          Length = 71

 Score = 24.0 bits (52), Expect = 8.0
 Identities = 5/34 (14%), Positives = 11/34 (32%)

Query: 107 AILWLIRNYPRLKDAQISHLVGTTGSTIEQIRNR 140
            +  LI     +    +S       ++I +I   
Sbjct: 10  RVYKLIDQKGPISRIDLSKESELAPASITKITRE 43


>d2yzca2 d.96.1.4 (A:142-297) Urate oxidase (uricase)
          {Arthrobacter globiformis [TaxId: 1665]}
          Length = 156

 Score = 23.9 bits (52), Expect = 9.6
 Identities = 12/44 (27%), Positives = 17/44 (38%)

Query: 4  RPLMPKASAVWLIDNTSLSFDQIAEFCGLHLLEVMAIADGESLQ 47
          R L    SA W  +   + FD +       LL+  A     +LQ
Sbjct: 39 RILATDVSARWRYNTVEVDFDAVYASVRGLLLKAFAETHSLALQ 82


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.132    0.383 

Gapped
Lambda     K      H
   0.267   0.0643    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 687,655
Number of extensions: 29619
Number of successful extensions: 78
Number of sequences better than 10.0: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 17
Length of query: 192
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 112
Effective length of database: 1,309,196
Effective search space: 146629952
Effective search space used: 146629952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.2 bits)