HHsearch alignment for GI: 254780801 and conserved domain: cd00622

>cd00622 PLPDE_III_ODC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase. This subfamily is composed mainly of eukaryotic ornithine decarboxylases (ODC, EC 4.1.1.17) and ODC-like enzymes from prokaryotes represented by Vibrio vulnificus LysineOrnithine decarboxylase. These are fold type III PLP-dependent enzymes that differ from most bacterial ODCs which are fold type I PLP-dependent enzymes. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. Members of this subfamily contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity. Also members of this su
Probab=97.50  E-value=0.0018  Score=44.71  Aligned_cols=172  Identities=16%  Similarity=0.137  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHHHHH-HCCCCCCCCCCCHHHHHHH-HCCCCCCCCCEEEECCCCC-
Q ss_conf             999999999999819896441899871899999999999-7298100012100011110-0000125873023024432-
Q gi|254780801|r    8 QVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVAL-SCGQVIFAENKLQEAKKKW-IPLRKEWDVQLRFIGSLQS-   84 (222)
Q Consensus         8 ~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~~~~-~~G~~~fGENrvQE~~~K~-~~l~~~~~i~wHfIG~LQs-   84 (222)
T Consensus        10 ~~i~~~~~~l~~af----p~~~i~YA~KaN~~~~vl~~l~~~G~-g~dv~S~~El~~al~~G~~---~~~Iif~gp~K~~   81 (362)
T cd00622          10 GDVVRKYRRWKKAL----PRVRPFYAVKCNPDPAVLRTLAALGA-GFDCASKGEIELVLGLGVS---PERIIFANPCKSI   81 (362)
T ss_pred             HHHHHHHHHHHHHC----CCCEEEEEECCCCCHHHHHHHHHCCC-EEEEECHHHHHHHHHCCCC---HHHEEECCCCCCH
T ss_conf             99999999999868----99879999665898999999997399-1998299999999984998---7895845887887


Q ss_pred             CHHHHHCCCC-HHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCC------CCCCCCCCCHHHHHHHHHHCCCCCCH
Q ss_conf             0013201110-0001222220013443333331143036889700466------56346570001222344310431100
Q gi|254780801|r   85 NKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------IQKSGIMPNQTKDFVILCRQKYQLNV  157 (222)
Q Consensus        85 NKvk~i~~~~-~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e------~~K~G~~p~el~~l~~~i~~~~~L~i  157 (222)
T Consensus        82 ~el~~a~~~gv~~i-~vDS~~EL~~i~~~~~----~~~i~lRv~~~~~~~~~~~~~KFGi~~~~~~~~l~~~~~~-~l~~  155 (362)
T cd00622          82 SDIRYAAELGVRLF-TFDSEDELEKIAKHAP----GAKLLLRIATDDSGALCPLSRKFGADPEEARELLRRAKEL-GLNV  155 (362)
T ss_pred             HHHHHHHHCCCCEE-EECCHHHHHHHHHHCC----CCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCCE
T ss_conf             99999997499667-7278999999998677----7826999866999873357775799999999999999862-9956


Q ss_pred             HHHEE-CCCCCCCCHH---HHHHHHHHHHH---C--CCCEECCCC
Q ss_conf             11101-1543345205---89999999887---5--894722477
Q gi|254780801|r  158 EGLMC-IPPAMGNPKP---HFYLLSEIARE---C--KLTKLSMGM  193 (222)
Q Consensus       158 ~GLMt-i~p~~~d~~~---~F~~l~~l~~~---~--~~~~LSmGM  193 (222)
T Consensus       156 ~GlH~H~GS~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~idiGG  200 (362)
T cd00622         156 VGVSFHVGSQCTDPSAYVDAIADAREVFDEAAELGFKLKLLDIGG  200 (362)
T ss_pred             EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECC
T ss_conf             889987687768979999999999999999997599976798379