HHsearch alignment for GI: 254780801 and conserved domain: cd00622
>cd00622 PLPDE_III_ODC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase. This subfamily is composed mainly of eukaryotic ornithine decarboxylases (ODC, EC 4.1.1.17) and ODC-like enzymes from prokaryotes represented by Vibrio vulnificus LysineOrnithine decarboxylase. These are fold type III PLP-dependent enzymes that differ from most bacterial ODCs which are fold type I PLP-dependent enzymes. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. Members of this subfamily contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity. Also members of this su
Probab=97.50 E-value=0.0018 Score=44.71 Aligned_cols=172 Identities=16% Similarity=0.137 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHHHHH-HCCCCCCCCCCCHHHHHHH-HCCCCCCCCCEEEECCCCC-
Q ss_conf 999999999999819896441899871899999999999-7298100012100011110-0000125873023024432-
Q gi|254780801|r 8 QVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVAL-SCGQVIFAENKLQEAKKKW-IPLRKEWDVQLRFIGSLQS- 84 (222)
Q Consensus 8 ~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~~~~-~~G~~~fGENrvQE~~~K~-~~l~~~~~i~wHfIG~LQs- 84 (222)
T Consensus 10 ~~i~~~~~~l~~af----p~~~i~YA~KaN~~~~vl~~l~~~G~-g~dv~S~~El~~al~~G~~---~~~Iif~gp~K~~ 81 (362)
T cd00622 10 GDVVRKYRRWKKAL----PRVRPFYAVKCNPDPAVLRTLAALGA-GFDCASKGEIELVLGLGVS---PERIIFANPCKSI 81 (362)
T ss_pred HHHHHHHHHHHHHC----CCCEEEEEECCCCCHHHHHHHHHCCC-EEEEECHHHHHHHHHCCCC---HHHEEECCCCCCH
T ss_conf 99999999999868----99879999665898999999997399-1998299999999984998---7895845887887
Q ss_pred CHHHHHCCCC-HHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCC------CCCCCCCCCHHHHHHHHHHCCCCCCH
Q ss_conf 0013201110-0001222220013443333331143036889700466------56346570001222344310431100
Q gi|254780801|r 85 NKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------IQKSGIMPNQTKDFVILCRQKYQLNV 157 (222)
Q Consensus 85 NKvk~i~~~~-~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e------~~K~G~~p~el~~l~~~i~~~~~L~i 157 (222)
T Consensus 82 ~el~~a~~~gv~~i-~vDS~~EL~~i~~~~~----~~~i~lRv~~~~~~~~~~~~~KFGi~~~~~~~~l~~~~~~-~l~~ 155 (362)
T cd00622 82 SDIRYAAELGVRLF-TFDSEDELEKIAKHAP----GAKLLLRIATDDSGALCPLSRKFGADPEEARELLRRAKEL-GLNV 155 (362)
T ss_pred HHHHHHHHCCCCEE-EECCHHHHHHHHHHCC----CCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCCE
T ss_conf 99999997499667-7278999999998677----7826999866999873357775799999999999999862-9956
Q ss_pred HHHEE-CCCCCCCCHH---HHHHHHHHHHH---C--CCCEECCCC
Q ss_conf 11101-1543345205---89999999887---5--894722477
Q gi|254780801|r 158 EGLMC-IPPAMGNPKP---HFYLLSEIARE---C--KLTKLSMGM 193 (222)
Q Consensus 158 ~GLMt-i~p~~~d~~~---~F~~l~~l~~~---~--~~~~LSmGM 193 (222)
T Consensus 156 ~GlH~H~GS~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~idiGG 200 (362)
T cd00622 156 VGVSFHVGSQCTDPSAYVDAIADAREVFDEAAELGFKLKLLDIGG 200 (362)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECC
T ss_conf 889987687768979999999999999999997599976798379