HHsearch alignment for GI: 254780801 and conserved domain: cd00635

>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.
Probab=100.00  E-value=0  Score=563.48  Aligned_cols=213  Identities=43%  Similarity=0.595  Sum_probs=206.4

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCC
Q ss_conf             89999999999999999819896441899871899999999999729810001210001111000001258730230244
Q gi|254780801|r    3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSL   82 (222)
Q Consensus         3 i~~nl~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~L   82 (222)
T Consensus         1 I~~nl~~i~~~I~~a~~~~~R~~~~V~LiaVsK~~~~e~I~~a~~~G~~~fGENrvQE~~~K~~~l~~-~~i~wHfIG~L   79 (222)
T cd00635           1 IAENLEEVRERIAAAAERAGRDPDEVTLVAVSKTVPAEAIREAIEAGQRDFGENRVQEALDKAEELPD-PDIEWHFIGHL   79 (222)
T ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCC-CCCEEEEECCC
T ss_conf             97899999999999999828895651899998998999999999859962367708999986875488-88259996676


Q ss_pred             CCCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEE
Q ss_conf             32001320111000012222200134433333311430368897004665634657000122234431043110011101
Q gi|254780801|r   83 QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC  162 (222)
Q Consensus        83 QsNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMt  162 (222)
T Consensus        80 QsNKvk~i~~~~~~IhSvDs~kla~~l~~~~~~~~~~~~vlIQVNis~e~~K~G~~~~e~~~~~~~~~~~~~l~~~GLM~  159 (222)
T cd00635          80 QTNKVKYAVRLFDLIHSVDSLKLAEELNKRAEKEGRVLDVLVQVNIGGEESKSGVAPEELEELLEEIAALPNLRIRGLMT  159 (222)
T ss_pred             CHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf             23669987500458887788999999999999729997189998158875556889999999999999668997510365


Q ss_pred             CCCCCCCC---HHHHHHHHHHHHHC------CCCEECCCCCHHHHHHHHHCCCEEEECHHHCC
Q ss_conf             15433452---05899999998875------89472247773489999808988997113238
Q gi|254780801|r  163 IPPAMGNP---KPHFYLLSEIAREC------KLTKLSMGMTRDFELAIASGATSVRIGSGIFG  216 (222)
Q Consensus       163 i~p~~~d~---~~~F~~l~~l~~~~------~~~~LSmGMS~D~~~Ai~~Gst~vRiGs~iFG  216 (222)
T Consensus       160 i~p~~~d~~~~~~~F~~l~~l~~~l~~~~~~~~~~LSMGMS~Dy~~AI~~GST~VRIGs~iFG  222 (222)
T cd00635         160 IAPLTEDPEEVRPYFRELRELRDELGAKGGVNLKELSMGMSGDFEIAIEEGATLVRIGTAIFG  222 (222)
T ss_pred             ECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHCCCCEEEECCHHCC
T ss_conf             369999979999999999999999876459993988981414599999879997981632109