HHsearch alignment for GI: 254780801 and conserved domain: cd06815
>cd06815 PLPDE_III_AR_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase-like 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=99.70 E-value=4.2e-16 Score=129.63 Aligned_cols=205 Identities=21% Similarity=0.263 Sum_probs=153.8
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHCEEEEECCCCC--HHHHHHHHHCCCCCCCCCCCHHHHHHHHC-CCCCCCCCEEEECCC
Q ss_conf 999999999999998198964418998718999--99999999729810001210001111000-001258730230244
Q gi|254780801|r 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVD--SKKIRVALSCGQVIFAENKLQEAKKKWIP-LRKEWDVQLRFIGSL 82 (222)
Q Consensus 6 nl~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~--~e~I~~~~~~G~~~fGENrvQE~~~K~~~-l~~~~~i~wHfIG~L 82 (222)
T Consensus 7 dL~~l~~N~~~l~~~~~--~~gi~~~~VvKa~aG~~~iA~~l~~~G~~~lavari~e~~~LR~~Gi----~~pillL~~p 80 (353)
T cd06815 7 NLSKIRHNAKVLVELCK--SRGIEVTGVTKVVCGDPEIAEALLEGGITHLADSRIENLKKLKDLGI----SGPKMLLRIP 80 (353)
T ss_pred EHHHHHHHHHHHHHHHH--HCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEECHHHHHHHHHCCC----CCCEEEECCC
T ss_conf 39999999999999760--54988999984468959999999987999999702899999997599----9978997268
Q ss_pred CCCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEE
Q ss_conf 32001320111000012222200134433333311430368897004665634657000122234431043110011101
Q gi|254780801|r 83 QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC 162 (222)
Q Consensus 83 QsNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMt 162 (222)
T Consensus 81 ~~se~~~vv~~~di-s~~se~~~i~aLs~~A~~~gk~~~V~l~VDtG--m~R~Gv~ped~~~~~~~I~~lp~i~l~GI~T 157 (353)
T cd06815 81 MLSEVEDVVKYADI-SLNSELETIKALSEEAKKQGKIHKIILMVDLG--DLREGVLPEDLLDFVEEILKLPGIELVGIGT 157 (353)
T ss_pred CHHHHHHHHHHCEE-EECCCHHHHHHHHHHHHHCCCEEEEEEEEECC--CCCCCCCHHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 88899999873304-20287999999999999869847899999689--9957889899999999986599959999888
Q ss_pred -CCCCCC--CCHHHHHHHHHHHHHC------CCCEECCCCCHHHHHHHHHC----CCEEEECHHHC-CCCC
Q ss_conf -154334--5205899999998875------89472247773489999808----98899711323-8999
Q gi|254780801|r 163 -IPPAMG--NPKPHFYLLSEIAREC------KLTKLSMGMTRDFELAIASG----ATSVRIGSGIF-GERP 219 (222)
Q Consensus 163 -i~p~~~--d~~~~F~~l~~l~~~~------~~~~LSmGMS~D~~~Ai~~G----st~vRiGs~iF-G~R~ 219 (222)
T Consensus 158 hfaC~~gv~pt~~~~~~l~~~~~~ie~~~g~~l~~iSgGnS~~l~~~~~~~~~~~IN~lRiGe~i~~G~~~ 228 (353)
T cd06815 158 NLGCYGGVLPTEENMGKLVELKEEIEKEFGIKLPIISGGNSASLPLLLKGELPGGINQLRIGEAILLGRET 228 (353)
T ss_pred CHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCCCCCCCCCCCCEEEEECCC
T ss_conf 76357888999999999999999999984998766970537768988558985432103333158961257