HHsearch alignment for GI: 254780801 and conserved domain: cd06815

>cd06815 PLPDE_III_AR_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase-like 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=99.70  E-value=4.2e-16  Score=129.63  Aligned_cols=205  Identities=21%  Similarity=0.263  Sum_probs=153.8

Q ss_pred             HHHHHHHHHHHHHHHCCCCHHHCEEEEECCCCC--HHHHHHHHHCCCCCCCCCCCHHHHHHHHC-CCCCCCCCEEEECCC
Q ss_conf             999999999999998198964418998718999--99999999729810001210001111000-001258730230244
Q gi|254780801|r    6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVD--SKKIRVALSCGQVIFAENKLQEAKKKWIP-LRKEWDVQLRFIGSL   82 (222)
Q Consensus         6 nl~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~--~e~I~~~~~~G~~~fGENrvQE~~~K~~~-l~~~~~i~wHfIG~L   82 (222)
T Consensus         7 dL~~l~~N~~~l~~~~~--~~gi~~~~VvKa~aG~~~iA~~l~~~G~~~lavari~e~~~LR~~Gi----~~pillL~~p   80 (353)
T cd06815           7 NLSKIRHNAKVLVELCK--SRGIEVTGVTKVVCGDPEIAEALLEGGITHLADSRIENLKKLKDLGI----SGPKMLLRIP   80 (353)
T ss_pred             EHHHHHHHHHHHHHHHH--HCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEECHHHHHHHHHCCC----CCCEEEECCC
T ss_conf             39999999999999760--54988999984468959999999987999999702899999997599----9978997268


Q ss_pred             CCCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEE
Q ss_conf             32001320111000012222200134433333311430368897004665634657000122234431043110011101
Q gi|254780801|r   83 QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC  162 (222)
Q Consensus        83 QsNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMt  162 (222)
T Consensus        81 ~~se~~~vv~~~di-s~~se~~~i~aLs~~A~~~gk~~~V~l~VDtG--m~R~Gv~ped~~~~~~~I~~lp~i~l~GI~T  157 (353)
T cd06815          81 MLSEVEDVVKYADI-SLNSELETIKALSEEAKKQGKIHKIILMVDLG--DLREGVLPEDLLDFVEEILKLPGIELVGIGT  157 (353)
T ss_pred             CHHHHHHHHHHCEE-EECCCHHHHHHHHHHHHHCCCEEEEEEEEECC--CCCCCCCHHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf             88899999873304-20287999999999999869847899999689--9957889899999999986599959999888


Q ss_pred             -CCCCCC--CCHHHHHHHHHHHHHC------CCCEECCCCCHHHHHHHHHC----CCEEEECHHHC-CCCC
Q ss_conf             -154334--5205899999998875------89472247773489999808----98899711323-8999
Q gi|254780801|r  163 -IPPAMG--NPKPHFYLLSEIAREC------KLTKLSMGMTRDFELAIASG----ATSVRIGSGIF-GERP  219 (222)
Q Consensus       163 -i~p~~~--d~~~~F~~l~~l~~~~------~~~~LSmGMS~D~~~Ai~~G----st~vRiGs~iF-G~R~  219 (222)
T Consensus       158 hfaC~~gv~pt~~~~~~l~~~~~~ie~~~g~~l~~iSgGnS~~l~~~~~~~~~~~IN~lRiGe~i~~G~~~  228 (353)
T cd06815         158 NLGCYGGVLPTEENMGKLVELKEEIEKEFGIKLPIISGGNSASLPLLLKGELPGGINQLRIGEAILLGRET  228 (353)
T ss_pred             CHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCCCCCCCCCCCCEEEEECCC
T ss_conf             76357888999999999999999999984998766970537768988558985432103333158961257