HHsearch alignment for GI: 254780801 and conserved domain: cd06818

>cd06818 PLPDE_III_cryptic_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bacterial Cryptic D-Serine Dehydratase. This subfamily is composed of Burkholderia cepacia cryptic D-serine dehydratase (cryptic DSD), which is also called D-serine deaminase, and similar bacterial proteins. Members of this subfamily are fold type III PLP-dependent enzymes with similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as dimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity, it is possible cryptic DSDs may also form dimers. Cryptic DSDs are distinct from the ubiquitous bacterial DSDs coded by the dsdA gene, mammalian L-serine dehydratases (LSD) and mammalian serine racemase (SerRac), which are fold type II PLP-dependent enzymes. At present, the enzymatic and biochemical properties
Probab=98.88  E-value=2.8e-08  Score=77.06  Aligned_cols=202  Identities=13%  Similarity=0.125  Sum_probs=135.4

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHH-HHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEC--CCC
Q ss_conf             9999999999999819896441899871899999999-9997298100012100011110000012587302302--443
Q gi|254780801|r    7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIR-VALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG--SLQ   83 (222)
Q Consensus         7 l~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~-~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG--~LQ   83 (222)
T Consensus        10 ~~~le~Ni~~M~~~~~~--~gv~lRPH~KTHKs~eia~~Q~~~Ga~git~at~~EAe~~~~~-----G~~dilia~~iv~   82 (382)
T cd06818          10 ASALAHNLAWMQAFAAA--HGVKLAPHGKTTMAPQLFRRQLEAGAWGITVATVAQARVALAF-----GVRRVLLANQLVG   82 (382)
T ss_pred             HHHHHHHHHHHHHHHHH--CCCCEEEECCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHC-----CCCCEEEECCCCC
T ss_conf             99999999999999986--6983520401004799999999689983896779999999976-----9864799426579


Q ss_pred             CCHHHHHCCCCH------HCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCC-CCHHHHHHHHHHCCCCCC
Q ss_conf             200132011100------0012222200134433333311430368897004665634657-000122234431043110
Q gi|254780801|r   84 SNKVSEIVSLFD------VIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM-PNQTKDFVILCRQKYQLN  156 (222)
Q Consensus        84 sNKvk~i~~~~~------~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~-p~el~~l~~~i~~~~~L~  156 (222)
T Consensus        83 ~~~~~rl~~l~~~~~~~~i~~~vD~~~~~~~l~~~~~~~~~~~~V~ievd~G--~~R~Gv~~~~~a~~l~~~i~~~~~L~  160 (382)
T cd06818          83 KANLRRLAALLAADPDFEFFCLVDSVDNVRALAAFFAALERPLNVLIELGVP--GGRTGVRTEAEALALADAIAASPALR  160 (382)
T ss_pred             HHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCC--CCCCCCCCHHHHHHHHHHHHHCCCCE
T ss_conf             8899999999850899789999629999999999998559945899997889--88789998699999999997299965


Q ss_pred             HHHHEECCCC-----CCCC----HHHHHHHHHHHHHC---C-----CCEECCCCCHHHHHHHHH--C-------CCEEEE
Q ss_conf             0111011543-----3452----05899999998875---8-----947224777348999980--8-------988997
Q gi|254780801|r  157 VEGLMCIPPA-----MGNP----KPHFYLLSEIAREC---K-----LTKLSMGMTRDFELAIAS--G-------ATSVRI  210 (222)
Q Consensus       157 i~GLMti~p~-----~~d~----~~~F~~l~~l~~~~---~-----~~~LSmGMS~D~~~Ai~~--G-------st~vRi  210 (222)
T Consensus       161 ~~Gl~~y~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivs~GgT~~f~~~~~~~~~~~~~~~~~~elrp  240 (382)
T cd06818         161 LAGVEGYEGVAAHDDSEETLAAVRAFLARAVDLARRLAERGLFPDRELILTAGGSAWFDLVAEALAALALDGPVTLVLRS  240 (382)
T ss_pred             EEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCEEEECC
T ss_conf             94688546756678866899999999999999999999706788897089982895543334554144568773279867


Q ss_pred             CHHHCCC
Q ss_conf             1132389
Q gi|254780801|r  211 GSGIFGE  217 (222)
Q Consensus       211 Gs~iFG~  217 (222)
T Consensus       241 G~Yvf~D  247 (382)
T cd06818         241 GCYVTHD  247 (382)
T ss_pred             EEEEECC
T ss_conf             1699745