HHsearch alignment for GI: 254780801 and conserved domain: cd06843
>cd06843 PLPDE_III_PvsE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme PvsE. This subfamily is composed of PvsE from Vibrio parahaemolyticus and similar proteins. PvsE is a vibrioferrin biosynthesis protein which is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. It has been suggested that PvsE may be involved in the biosynthesis of the polycarboxylate siderophore vibrioferrin. It may catalyze the decarboxylation of serine to yield ethanolamine. PvsE may require homodimer formation and the presence of the PLP cofactor for activity.
Probab=98.61 E-value=1.1e-06 Score=66.31 Aligned_cols=178 Identities=17% Similarity=0.089 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCC-
Q ss_conf 9999999999999819896441899871899999999999729810001210001111000001258730230244320-
Q gi|254780801|r 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN- 85 (222)
Q Consensus 7 l~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQsN- 85 (222)
T Consensus 9 ~~~l~~~~~~l~~a~---p~~~~~~YAvKaN~~~~il~~l~~~G~g~DvaS~~El~~-~~~~~--~~~~Iif~gp~K~~~ 82 (377)
T cd06843 9 LAALRAHARALRASL---PPGCELFYAIKANSDPPILRALAPHVDGFEVASGGEIAH-VRAAV--PDAPLIFGGPGKTDS 82 (377)
T ss_pred HHHHHHHHHHHHHHC---CCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHH-HHHCC--CCCCEEECCCCCCHH
T ss_conf 999999999999857---999849999603889999999997699689829999999-98539--996479889999999
Q ss_pred HHHHHCCCC-HHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECC------------CCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 013201110-00012222200134433333311430368897004------------66563465700012223443104
Q gi|254780801|r 86 KVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG------------YEIQKSGIMPNQTKDFVILCRQK 152 (222)
Q Consensus 86 Kvk~i~~~~-~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~------------~e~~K~G~~p~el~~l~~~i~~~ 152 (222)
T Consensus 83 ~l~~a~~~gv~~i-~~DS~~El~~i~~~~~~~~~~~~v~lRinp~~~~~~~~~~~~~~~~sKFGi~~~~~~~~l~~~~~~ 161 (377)
T cd06843 83 ELAQALAQGVERI-HVESELELRRLNAVARRAGRTAPVLLRVNLALPDLPSSTLTMGGQPTPFGIDEADLPDALELLRDL 161 (377)
T ss_pred HHHHHHHCCCCEE-EECCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 9999998799889-988999999999878861996289999967877777554205888877898989999999999828
Q ss_pred CCCCHHHHEE-CCCCCCCCHH-------HHHHHHHHHHHCC--CCEECC
Q ss_conf 3110011101-1543345205-------8999999988758--947224
Q gi|254780801|r 153 YQLNVEGLMC-IPPAMGNPKP-------HFYLLSEIARECK--LTKLSM 191 (222)
Q Consensus 153 ~~L~i~GLMt-i~p~~~d~~~-------~F~~l~~l~~~~~--~~~LSm 191 (222)
T Consensus 162 ~~l~~~Glh~HvGS~~~d~~~~~~~~~~~~~~~~~~~~~~g~~~~~iDi 210 (377)
T cd06843 162 PNIRLRGFHFHLMSHNLDAAAHLALVKAYLETARQWAAEHGLDLDVVNV 210 (377)
T ss_pred CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 9985677777336788897999999999999999999971997314650