Query gi|254780801|ref|YP_003065214.1| hypothetical protein CLIBASIA_03460 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 222
No_of_seqs 125 out of 3258
Neff 5.9
Searched_HMMs 39220
Date Sun May 29 18:11:26 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780801.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0325 Predicted enzyme with 100.0 0 0 581.0 16.5 220 1-220 1-228 (228)
2 cd06824 PLPDE_III_Yggs_like Py 100.0 0 0 577.0 16.6 216 2-217 1-224 (224)
3 cd00635 PLPDE_III_YBL036c_like 100.0 0 0 563.5 16.8 213 3-216 1-222 (222)
4 cd06822 PLPDE_III_YBL036c_euk 100.0 0 0 540.1 16.2 210 3-216 1-227 (227)
5 TIGR00044 TIGR00044 conserved 100.0 0 0 510.2 11.3 217 2-218 3-250 (250)
6 KOG3157 consensus 100.0 0 0 480.4 14.5 215 6-222 10-241 (244)
7 pfam01168 Ala_racemase_N Alani 100.0 2.9E-31 7.4E-36 231.7 15.7 204 6-219 2-216 (216)
8 cd06808 PLPDE_III Type III Pyr 99.8 4.2E-19 1.1E-23 149.9 8.0 197 3-212 1-211 (211)
9 cd06815 PLPDE_III_AR_like_1 Ty 99.7 4.2E-16 1.1E-20 129.6 12.4 205 6-219 7-228 (353)
10 cd00430 PLPDE_III_AR Type III 99.6 8.4E-14 2.1E-18 114.2 11.6 206 6-220 7-227 (367)
11 PRK00053 alr alanine racemase; 99.4 6E-12 1.5E-16 101.7 11.3 203 6-220 9-223 (360)
12 PRK13340 alanine racemase; Rev 99.4 1.2E-11 3.2E-16 99.6 11.9 202 3-220 49-268 (404)
13 PRK11930 putative bifunctional 99.4 8.6E-12 2.2E-16 100.6 10.8 202 3-221 472-690 (824)
14 cd06826 PLPDE_III_AR2 Type III 99.3 2.3E-11 5.8E-16 97.8 10.6 203 3-221 11-231 (365)
15 cd06827 PLPDE_III_AR_proteobac 99.3 2.7E-11 7E-16 97.3 10.5 202 6-220 7-217 (354)
16 PRK03646 dadX alanine racemase 99.3 6.1E-11 1.6E-15 94.9 11.3 202 6-220 9-217 (355)
17 COG0787 Alr Alanine racemase [ 99.3 8.9E-11 2.3E-15 93.8 11.4 207 6-221 10-226 (360)
18 cd06820 PLPDE_III_LS_D-TA_like 99.2 5.1E-11 1.3E-15 95.5 8.9 204 7-219 10-233 (353)
19 cd06825 PLPDE_III_VanT Type II 99.2 1E-10 2.7E-15 93.4 10.4 194 3-217 11-222 (368)
20 COG3457 Predicted amino acid r 99.2 1.4E-10 3.5E-15 92.6 10.5 204 6-218 9-230 (353)
21 cd06821 PLPDE_III_D-TA Type II 99.1 4.6E-10 1.2E-14 89.0 9.8 205 7-220 16-242 (361)
22 TIGR00492 alr alanine racemase 99.1 8.7E-10 2.2E-14 87.2 11.0 204 2-221 12-240 (383)
23 cd06819 PLPDE_III_LS_D-TA Type 99.1 4.1E-10 1E-14 89.3 7.5 205 7-220 14-241 (358)
24 cd07376 PLPDE_III_DSD_D-TA_lik 99.0 2.6E-09 6.6E-14 84.0 10.2 203 3-220 2-227 (345)
25 cd06818 PLPDE_III_cryptic_DSD 98.9 2.8E-08 7E-13 77.1 10.3 202 7-217 10-247 (382)
26 cd06813 PLPDE_III_DSD_D-TA_lik 98.8 1E-07 2.5E-12 73.3 10.4 205 7-220 18-266 (388)
27 cd06812 PLPDE_III_DSD_D-TA_lik 98.8 7.1E-08 1.8E-12 74.3 9.6 205 7-220 13-240 (374)
28 cd06814 PLPDE_III_DSD_D-TA_lik 98.7 7.6E-08 1.9E-12 74.1 8.0 206 7-221 16-253 (379)
29 cd06843 PLPDE_III_PvsE_like Ty 98.6 1.1E-06 2.8E-11 66.3 11.6 178 7-191 9-210 (377)
30 cd06839 PLPDE_III_Btrk_like Ty 98.6 1.4E-06 3.7E-11 65.5 11.4 178 7-192 14-216 (382)
31 cd06817 PLPDE_III_DSD Type III 98.5 5.8E-07 1.5E-11 68.2 8.7 209 7-220 13-258 (389)
32 COG3616 Predicted amino acid a 98.5 2.6E-06 6.7E-11 63.8 10.3 207 6-218 24-243 (368)
33 cd06830 PLPDE_III_ADC Type III 98.4 1.3E-05 3.2E-10 59.2 13.3 184 3-192 15-231 (409)
34 cd06811 PLPDE_III_yhfX_like Ty 98.4 4.7E-06 1.2E-10 62.0 10.2 208 7-221 35-266 (382)
35 TIGR01048 lysA diaminopimelate 98.4 5.8E-07 1.5E-11 68.2 5.0 179 8-192 33-245 (431)
36 COG0019 LysA Diaminopimelate d 98.3 2.2E-05 5.6E-10 57.6 12.0 174 9-193 36-237 (394)
37 cd06828 PLPDE_III_DapDC Type I 98.3 2E-05 5.2E-10 57.8 11.2 162 26-192 27-213 (373)
38 cd06841 PLPDE_III_MccE_like Ty 98.2 3.5E-05 9E-10 56.1 10.7 180 8-192 15-210 (379)
39 TIGR03099 dCO2ase_PEP1 pyridox 98.1 5.4E-05 1.4E-09 54.9 10.6 176 7-191 32-231 (398)
40 cd06810 PLPDE_III_ODC_DapDC_li 98.1 7.8E-05 2E-09 53.8 11.0 176 8-192 9-208 (368)
41 cd06842 PLPDE_III_Y4yA_like Ty 98.1 8.4E-05 2.1E-09 53.6 10.6 180 8-192 18-211 (423)
42 cd06840 PLPDE_III_Bif_AspK_Dap 97.7 0.00095 2.4E-08 46.5 10.9 174 7-191 19-211 (368)
43 pfam02784 Orn_Arg_deC_N Pyrido 97.5 0.0016 4.1E-08 45.0 9.9 164 7-182 2-183 (245)
44 cd00622 PLPDE_III_ODC Type III 97.5 0.0018 4.5E-08 44.7 10.1 172 8-193 10-200 (362)
45 PRK11165 diaminopimelate decar 97.1 0.0036 9.2E-08 42.6 8.3 131 30-167 41-188 (412)
46 PRK08961 bifunctional aspartat 96.9 0.015 3.8E-07 38.5 9.5 153 30-192 533-706 (865)
47 cd06836 PLPDE_III_ODC_DapDC_li 96.9 0.027 6.8E-07 36.8 10.8 176 7-192 10-214 (379)
48 cd06829 PLPDE_III_CANSDC Type 96.8 0.027 6.8E-07 36.8 10.6 111 26-146 25-151 (346)
49 cd06831 PLPDE_III_ODC_like_AZI 96.7 0.02 5E-07 37.7 9.0 173 7-192 20-210 (394)
50 PRK00230 orotidine 5'-phosphat 94.3 0.15 3.8E-06 31.8 6.0 156 52-220 40-217 (231)
51 KOG0622 consensus 92.5 0.28 7.2E-06 29.9 5.0 147 27-183 79-239 (448)
52 COG1166 SpeA Arginine decarbox 91.0 1.1 2.7E-05 26.0 6.5 169 3-184 90-300 (652)
53 cd00429 RPE Ribulose-5-phospha 89.5 1 2.6E-05 26.1 5.4 68 153-220 126-203 (211)
54 COG0036 Rpe Pentose-5-phosphat 88.5 0.67 1.7E-05 27.4 3.9 170 28-221 8-207 (220)
55 PRK05581 ribulose-phosphate 3- 87.4 1.7 4.3E-05 24.7 5.4 69 153-221 130-208 (220)
56 PRK05354 arginine decarboxylas 86.6 3.1 8E-05 22.8 7.1 156 3-171 74-261 (634)
57 PRK13813 orotidine 5'-phosphat 86.2 3 7.7E-05 23.0 6.2 153 51-220 40-201 (215)
58 PRK08745 ribulose-phosphate 3- 84.3 2 5.2E-05 24.1 4.6 70 152-221 130-209 (223)
59 PRK08005 ribulose-phosphate 3- 84.0 3.7 9.5E-05 22.3 5.8 70 152-221 126-201 (210)
60 KOG3111 consensus 83.0 3.4 8.6E-05 22.7 5.2 79 136-221 122-207 (224)
61 pfam00834 Ribul_P_3_epim Ribul 81.2 3.5 8.9E-05 22.6 4.8 65 153-217 126-200 (201)
62 PRK08091 ribulose-phosphate 3- 80.6 4.8 0.00012 21.6 5.3 69 152-220 145-223 (235)
63 PRK08883 ribulose-phosphate 3- 80.4 3.3 8.5E-05 22.7 4.5 69 153-221 127-205 (220)
64 TIGR03128 RuMP_HxlA 3-hexulose 79.7 3.9 0.0001 22.2 4.6 154 52-220 37-195 (206)
65 PTZ00170 D-ribulose-5-phosphat 78.0 6.6 0.00017 20.7 5.7 68 153-220 134-207 (224)
66 TIGR01508 rib_reduct_arch diam 71.5 3.5 8.8E-05 22.6 2.6 34 26-59 99-137 (224)
67 PRK09722 allulose-6-phosphate 71.5 9.5 0.00024 19.6 5.4 66 153-218 127-203 (227)
68 cd04733 OYE_like_2_FMN Old yel 67.5 11 0.00029 19.1 5.8 113 102-215 198-326 (338)
69 TIGR01546 GAPDH-II_archae glyc 67.3 3.3 8.5E-05 22.7 1.8 43 8-54 7-49 (335)
70 cd04725 OMP_decarboxylase_like 65.6 7.9 0.0002 20.2 3.4 154 53-219 37-208 (216)
71 TIGR02349 DnaJ_bact chaperone 64.2 5.1 0.00013 21.5 2.2 45 29-73 4-52 (386)
72 pfam00215 OMPdecase Orotidine 64.0 2.3 5.8E-05 23.8 0.4 154 52-219 38-210 (218)
73 cd01492 Aos1_SUMO Ubiquitin ac 62.4 6.7 0.00017 20.6 2.5 71 48-120 67-138 (197)
74 COG0167 PyrD Dihydroorotate de 62.0 11 0.00028 19.2 3.6 44 172-215 226-274 (310)
75 pfam00899 ThiF ThiF family. Th 59.9 5.5 0.00014 21.2 1.7 103 14-120 16-119 (134)
76 PRK04207 glyceraldehyde-3-phos 59.7 12 0.00031 18.9 3.4 46 7-56 10-55 (338)
77 TIGR01037 pyrD_sub1_fam dihydr 55.0 11 0.00028 19.2 2.6 144 55-218 76-277 (308)
78 PRK05286 dihydroorotate dehydr 54.6 19 0.00049 17.6 5.8 99 107-215 196-318 (336)
79 cd02803 OYE_like_FMN_family Ol 54.3 19 0.00049 17.5 5.7 101 116-217 205-317 (327)
80 PRK08223 hypothetical protein; 53.7 11 0.00029 19.1 2.5 121 39-165 64-194 (287)
81 PRK05690 molybdopterin biosynt 53.0 7.7 0.0002 20.2 1.5 71 48-120 78-150 (245)
82 COG0386 BtuE Glutathione perox 52.3 10 0.00025 19.5 2.0 38 121-162 26-65 (162)
83 cd00757 ThiF_MoeB_HesA_family 51.6 8.2 0.00021 20.0 1.5 72 48-120 67-139 (228)
84 cd04729 NanE N-acetylmannosami 50.3 22 0.00057 17.1 5.1 47 171-217 163-212 (219)
85 cd02932 OYE_YqiM_FMN Old yello 50.0 22 0.00057 17.1 6.2 100 115-216 217-325 (336)
86 pfam11399 DUF3192 Protein of u 50.0 16 0.00041 18.1 2.8 43 168-210 10-62 (102)
87 TIGR00762 DegV degV family pro 49.5 14 0.00035 18.5 2.4 76 122-202 24-106 (300)
88 cd04735 OYE_like_4_FMN Old yel 49.1 23 0.00059 17.0 4.9 93 121-216 217-318 (353)
89 PRK11170 nagA N-acetylglucosam 49.0 23 0.00059 17.0 4.7 77 124-208 126-214 (381)
90 PRK12858 tagatose 1,6-diphosph 48.1 24 0.00061 16.9 4.2 109 105-215 146-282 (340)
91 PRK07329 hypothetical protein; 48.0 24 0.00062 16.9 6.2 101 75-191 139-245 (246)
92 TIGR01163 rpe ribulose-phospha 48.0 9.7 0.00025 19.5 1.4 87 134-222 108-210 (216)
93 PRK04161 tagatose 1,6-diphosph 48.0 20 0.0005 17.5 3.0 44 172-215 229-281 (326)
94 cd02931 ER_like_FMN Enoate red 47.6 25 0.00062 16.8 4.8 116 101-216 199-340 (382)
95 PRK07565 dihydroorotate dehydr 47.4 23 0.00058 17.1 3.2 41 175-215 229-272 (333)
96 cd01483 E1_enzyme_family Super 46.5 15 0.00038 18.3 2.2 69 50-120 47-117 (143)
97 PRK07328 histidinol-phosphatas 46.3 26 0.00065 16.7 6.2 74 104-190 176-255 (268)
98 cd01485 E1-1_like Ubiquitin ac 44.8 14 0.00036 18.4 1.9 74 45-120 64-141 (198)
99 TIGR00587 nfo apurinic endonuc 44.4 24 0.0006 16.9 2.9 85 104-190 152-243 (318)
100 cd02930 DCR_FMN 2,4-dienoyl-Co 42.7 29 0.00074 16.4 6.3 102 114-216 199-311 (353)
101 PRK13523 NADPH dehydrogenase N 41.8 30 0.00076 16.3 4.3 96 120-216 208-310 (337)
102 cd02940 DHPD_FMN Dihydropyrimi 41.1 31 0.00078 16.2 4.6 41 175-215 240-285 (299)
103 TIGR03471 HpnJ hopanoid biosyn 40.6 31 0.00079 16.1 4.8 70 134-205 317-392 (472)
104 cd00019 AP2Ec AP endonuclease 39.6 27 0.00069 16.6 2.6 39 117-156 134-172 (279)
105 PRK08644 thiamine biosynthesis 38.5 21 0.00053 17.3 1.9 70 50-120 74-145 (209)
106 TIGR01993 Pyr-5-nucltdase pyri 37.8 9.2 0.00023 19.7 -0.0 35 132-166 31-65 (205)
107 pfam00218 IGPS Indole-3-glycer 36.9 35 0.0009 15.8 3.7 172 25-219 45-246 (254)
108 PRK08185 hypothetical protein; 36.9 35 0.0009 15.8 7.4 181 6-214 22-231 (283)
109 PRK08762 molybdopterin biosynt 35.8 20 0.00052 17.4 1.5 71 48-120 184-256 (379)
110 cd04739 DHOD_like Dihydroorota 35.4 35 0.0009 15.8 2.7 39 177-215 229-270 (325)
111 PRK07878 molybdopterin biosynt 34.9 24 0.0006 17.0 1.7 72 48-120 88-160 (392)
112 cd04316 ND_PkAspRS_like_N ND_P 34.4 14 0.00036 18.5 0.5 75 77-162 1-75 (108)
113 PRK08195 4-hydroxy-2-ketovaler 33.9 39 0.001 15.5 5.8 83 135-221 139-231 (337)
114 PRK12857 putative aldolase; Re 33.8 40 0.001 15.4 4.7 77 137-215 155-236 (284)
115 PRK12399 tagatose 1,6-diphosph 33.6 40 0.001 15.4 2.9 109 105-215 143-279 (324)
116 TIGR01304 IMP_DH_rel_2 IMP deh 33.4 11 0.00029 19.1 -0.1 26 189-214 267-292 (376)
117 PRK13507 formate--tetrahydrofo 32.8 41 0.001 15.3 6.9 94 76-170 463-569 (587)
118 PRK09485 mmuM homocysteine met 32.3 42 0.0011 15.3 2.9 69 94-166 159-230 (308)
119 cd00755 YgdL_like Family of ac 32.1 22 0.00057 17.1 1.2 102 14-120 26-130 (231)
120 PRK05588 histidinol-phosphatas 31.8 43 0.0011 15.2 5.2 63 120-189 179-245 (256)
121 PRK08155 acetolactate synthase 31.8 43 0.0011 15.2 7.6 75 138-218 197-291 (564)
122 PRK05500 bifunctional orotidin 30.4 45 0.0011 15.1 4.6 57 3-59 247-308 (478)
123 PRK06806 fructose-bisphosphate 30.0 46 0.0012 15.0 4.8 181 6-215 27-234 (281)
124 PRK05600 thiamine biosynthesis 29.9 25 0.00063 16.8 1.1 78 41-120 80-159 (370)
125 cd00947 TBP_aldolase_IIB Tagat 29.8 46 0.0012 15.0 5.3 75 138-215 149-230 (276)
126 COG1031 Uncharacterized Fe-S o 29.8 31 0.00079 16.2 1.6 26 32-57 210-239 (560)
127 PRK10693 response regulator of 29.3 47 0.0012 14.9 3.1 36 25-60 77-112 (337)
128 PRK07709 fructose-bisphosphate 29.2 47 0.0012 14.9 4.9 76 137-214 156-236 (285)
129 TIGR02810 agaZ_gatZ D-tagatose 28.7 48 0.0012 14.9 4.4 77 117-196 35-131 (430)
130 COG0484 DnaJ DnaJ-class molecu 28.3 16 0.00042 18.0 -0.0 42 28-69 7-51 (371)
131 PRK07259 dihydroorotate dehydr 28.2 49 0.0012 14.8 2.6 42 174-215 223-267 (301)
132 TIGR02461 osmo_MPG_phos mannos 27.8 20 0.00051 17.4 0.4 11 50-60 128-138 (248)
133 PRK06843 inositol-5-monophosph 27.7 50 0.0013 14.8 3.3 50 171-220 239-294 (404)
134 cd00674 LysRS_core_class_I Thi 27.7 50 0.0013 14.8 3.3 131 4-147 143-294 (354)
135 COG0284 PyrF Orotidine-5'-phos 27.4 50 0.0013 14.7 4.9 139 72-219 67-222 (240)
136 PRK13506 formate--tetrahydrofo 27.3 30 0.00076 16.3 1.2 95 75-170 454-560 (577)
137 PRK07998 gatY putative fructos 27.2 51 0.0013 14.7 5.3 72 137-215 153-233 (283)
138 PRK05597 molybdopterin biosynt 26.6 49 0.0012 14.8 2.2 78 41-120 67-146 (355)
139 cd01571 NAPRTase_B Nicotinate 26.6 52 0.0013 14.6 5.8 64 156-219 211-281 (302)
140 pfam01268 FTHFS Formate--tetra 26.4 32 0.00083 16.0 1.2 156 7-170 357-538 (555)
141 PRK00278 trpC indole-3-glycero 26.2 53 0.0014 14.6 2.6 170 26-218 48-247 (261)
142 pfam05891 Hydroxy-O-Methy Puta 26.0 53 0.0014 14.6 3.6 106 78-188 65-195 (217)
143 cd04734 OYE_like_3_FMN Old yel 26.0 53 0.0014 14.6 5.8 113 102-215 190-319 (343)
144 COG4090 Uncharacterized protei 25.8 33 0.00083 16.0 1.2 75 73-163 51-125 (154)
145 PRK12737 gatY tagatose-bisphos 25.8 54 0.0014 14.5 4.7 75 138-215 156-236 (284)
146 cd04726 KGPDC_HPS 3-Keto-L-gul 25.8 54 0.0014 14.5 5.6 153 53-219 39-194 (202)
147 COG3010 NanE Putative N-acetyl 25.7 54 0.0014 14.5 4.8 44 171-215 167-213 (229)
148 COG4809 Archaeal ADP-dependent 25.4 33 0.00084 16.0 1.1 81 26-111 224-309 (466)
149 PRK11858 aksA trans-homoaconit 24.8 56 0.0014 14.4 4.4 78 137-219 142-228 (378)
150 cd00331 IGPS Indole-3-glycerol 24.3 57 0.0015 14.4 2.8 104 97-219 101-209 (217)
151 PRK10606 btuE putative glutath 24.2 50 0.0013 14.7 1.9 27 121-150 26-54 (183)
152 COG0205 PfkA 6-phosphofructoki 24.2 32 0.00082 16.1 0.9 23 72-97 253-275 (347)
153 PRK07688 thiamine/molybdopteri 24.1 48 0.0012 14.9 1.8 67 52-120 74-144 (339)
154 PRK08227 aldolase; Validated 23.7 59 0.0015 14.3 6.4 94 122-219 138-261 (291)
155 COG1902 NemA NADH:flavin oxido 23.5 59 0.0015 14.3 8.4 115 102-216 198-323 (363)
156 cd00477 FTHFS Formyltetrahydro 23.2 42 0.0011 15.3 1.3 53 85-137 430-486 (524)
157 TIGR01290 nifB nitrogenase cof 23.0 61 0.0015 14.2 3.2 64 122-185 34-109 (461)
158 PRK13671 hypothetical protein; 22.9 61 0.0016 14.2 3.7 15 41-55 85-101 (298)
159 cd02929 TMADH_HD_FMN Trimethyl 22.9 61 0.0016 14.2 6.2 100 116-216 214-324 (370)
160 PRK08649 inositol-5-monophosph 22.6 62 0.0016 14.1 3.0 27 193-219 266-292 (368)
161 pfam01116 F_bP_aldolase Fructo 22.4 62 0.0016 14.1 4.4 73 138-215 154-235 (283)
162 PRK08328 hypothetical protein; 22.2 45 0.0011 15.1 1.3 70 49-120 74-146 (230)
163 PRK08527 acetolactate synthase 22.1 63 0.0016 14.1 8.2 14 200-213 267-280 (560)
164 cd01487 E1_ThiF_like E1_ThiF_l 22.0 57 0.0015 14.4 1.8 99 16-120 16-117 (174)
165 PRK05567 inositol-5'-monophosp 21.8 64 0.0016 14.0 3.1 50 171-220 314-369 (486)
166 PTZ00314 inosine-5'-monophosph 21.6 65 0.0016 14.0 2.9 50 171-220 324-379 (499)
167 KOG3892 consensus 21.4 51 0.0013 14.7 1.5 14 195-208 218-231 (407)
168 TIGR02720 pyruv_oxi_spxB pyruv 21.2 52 0.0013 14.7 1.4 71 73-150 238-322 (577)
169 TIGR00968 3a0106s01 sulfate AB 21.1 60 0.0015 14.2 1.8 33 171-205 171-203 (241)
170 KOG1014 consensus 20.8 67 0.0017 13.9 2.1 11 74-84 74-84 (312)
171 PRK09853 putative selenate red 20.8 67 0.0017 13.9 2.7 54 132-185 226-308 (1032)
172 TIGR02194 GlrX_NrdH Glutaredox 20.7 39 0.001 15.5 0.8 19 128-146 54-72 (72)
173 PRK01060 endonuclease IV; Prov 20.6 68 0.0017 13.9 2.8 37 119-156 139-175 (281)
174 PRK10266 curved DNA-binding pr 20.2 21 0.00054 17.3 -0.7 41 29-69 8-57 (306)
No 1
>COG0325 Predicted enzyme with a TIM-barrel fold [General function prediction only]
Probab=100.00 E-value=0 Score=580.97 Aligned_cols=220 Identities=40% Similarity=0.555 Sum_probs=212.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEC
Q ss_conf 99899999999999999998198964418998718999999999997298100012100011110000012587302302
Q gi|254780801|r 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80 (222)
Q Consensus 1 M~i~~nl~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG 80 (222)
|+|.+||..|+++|..||.++||++++|+|||||||+|+++|+++|++|+|+||||||||+.+|+..|++.++|+|||||
T Consensus 1 ~~i~~nl~~v~~~I~~a~~~a~R~~~~V~LvAVSK~~~~~~I~~~~~aG~r~fGENrvQe~~~K~~~l~~~~~i~WHfIG 80 (228)
T COG0325 1 MDIKENLAAVRERIAAAAERAGRNPGSVTLVAVSKTVPAEDIREAYEAGQRHFGENRVQEALDKIEALKDLPDIEWHFIG 80 (228)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCHHCCHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 94788999999999999997389988479999767789999999998488032331899999999964767881799964
Q ss_pred CCCCCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHH
Q ss_conf 44320013201110000122222001344333333114303688970046656346570001222344310431100111
Q gi|254780801|r 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160 (222)
Q Consensus 81 ~LQsNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GL 160 (222)
||||||+|+++++|||||||||+|+|++|++++...+++++||||||+++|+||+|+.|+++.+++..|.++++|+++||
T Consensus 81 ~LQsNK~k~v~~~~~~ihSlDr~klA~~l~kra~~~~~~l~v~iQVNi~~E~sK~G~~~~e~~~~~~~~~~~~~L~l~GL 160 (228)
T COG0325 81 PLQSNKVKLVAENFDWIHSLDRLKLAKELNKRALELPKPLNVLIQVNISGEESKSGVPPEELDELAQEVQELPNLELRGL 160 (228)
T ss_pred HHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 11356799998424233330779999999989973798863899994388623379998999999999974899767577
Q ss_pred EECCCCCCCC---HHHHHHHHHHHHHCC-----CCEECCCCCHHHHHHHHHCCCEEEECHHHCCCCCC
Q ss_conf 0115433452---058999999988758-----94722477734899998089889971132389999
Q gi|254780801|r 161 MCIPPAMGNP---KPHFYLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220 (222)
Q Consensus 161 Mti~p~~~d~---~~~F~~l~~l~~~~~-----~~~LSmGMS~D~~~Ai~~Gst~vRiGs~iFG~R~~ 220 (222)
|||||+++|+ +..|..+++|++++. +++||||||+||++||++|||||||||+|||+|+|
T Consensus 161 M~ipp~~~d~~~~~~~F~~l~~l~~~l~~~~~~~~~LSMGMS~D~e~AI~~GaT~VRIGtaiFg~r~~ 228 (228)
T COG0325 161 MTIPPLTDDPEEIFAVFRKLRKLFDELKAKYPPIDELSMGMSNDYEIAIAEGATMVRIGTAIFGARDY 228 (228)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHCCCCEEEECHHHHCCCCC
T ss_conf 74179989979999999999999999987458978526867625999998599889970786187899
No 2
>cd06824 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins. This subfamily contains mainly uncharacterized proteobacterial proteins with similarity to the hypothetical Escherichia coli protein YggS, a homolog of yeast YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. Like yeast YBL036c, Yggs is a single domain monomeric protein with a typical TIM-barrel fold. Its structure, which shows a covalently-bound PLP cofactor, is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. YggS has not been characterized extensively and its biological function is still unkonwn.
Probab=100.00 E-value=0 Score=576.99 Aligned_cols=216 Identities=39% Similarity=0.492 Sum_probs=209.6
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECC
Q ss_conf 98999999999999999981989644189987189999999999972981000121000111100000125873023024
Q gi|254780801|r 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGS 81 (222)
Q Consensus 2 ~i~~nl~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~ 81 (222)
+|++||+.|+++|++||.++||+|++|+|||||||+|+++|.++|++|+++||||||||+.+|++.|++.++++||||||
T Consensus 1 ~I~~nl~~i~~~I~~a~~~~gR~~~~V~LiaVSK~~~~e~I~~a~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~ 80 (224)
T cd06824 1 NIAENLAQVKQRIAQAAKQAGRDPSSVQLLAVSKTKPADAIREAYAAGQRHFGENYVQEALEKIEALRDLQDIEWHFIGP 80 (224)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECC
T ss_conf 97999999999999999983879576599998899899999999986995247870999999999853378955999775
Q ss_pred CCCCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHE
Q ss_conf 43200132011100001222220013443333331143036889700466563465700012223443104311001110
Q gi|254780801|r 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLM 161 (222)
Q Consensus 82 LQsNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLM 161 (222)
|||||+|+++++||+||||||+++|++|++++.+.+++++||||||+++|++|+||.|+++.++++.+.+++||+++|||
T Consensus 81 LQsNKvk~i~~~~~~IhSvDs~kla~~l~~~~~~~~~~~~vliQVN~s~E~~K~G~~~~e~~~~~~~i~~~~~l~i~GLM 160 (224)
T cd06824 81 IQSNKTKLIAENFDWVHSVDRLKIAKRLNDQRPAGLPPLNVCIQVNISGEDSKSGVAPEDAAELAEAISQLPNLRLRGLM 160 (224)
T ss_pred CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 52016799998521897645099999999999972998628999853785002698999999999999956998426677
Q ss_pred ECCCCCCCC---HHHHHHHHHHHHHC-----CCCEECCCCCHHHHHHHHHCCCEEEECHHHCCC
Q ss_conf 115433452---05899999998875-----894722477734899998089889971132389
Q gi|254780801|r 162 CIPPAMGNP---KPHFYLLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217 (222)
Q Consensus 162 ti~p~~~d~---~~~F~~l~~l~~~~-----~~~~LSmGMS~D~~~Ai~~Gst~vRiGs~iFG~ 217 (222)
||||+++|+ +++|..+++|++++ .+++||||||+||++||++|||||||||+|||+
T Consensus 161 ti~p~~~d~~~~r~~F~~l~~l~~~l~~~~~~~~~LSMGMS~Dye~AI~~GsT~VRIGsaIFGa 224 (224)
T cd06824 161 AIPAPTDDEAAQRAAFKRLRQLFDQLKKQYPDLDTLSMGMSGDLEAAIAAGSTMVRIGTAIFGA 224 (224)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHCCCCEEEECCHHHCC
T ss_conf 6579998857899999999999999985179989577705454999998799979818364196
No 3
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.
Probab=100.00 E-value=0 Score=563.48 Aligned_cols=213 Identities=43% Similarity=0.595 Sum_probs=206.4
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCC
Q ss_conf 89999999999999999819896441899871899999999999729810001210001111000001258730230244
Q gi|254780801|r 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSL 82 (222)
Q Consensus 3 i~~nl~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~L 82 (222)
|++||+.|+++|+.+|.++||++++|+|||||||+|.++|.++|++|+++|||||+||+.+|+..|++ ++++|||||||
T Consensus 1 I~~nl~~i~~~I~~a~~~~~R~~~~V~LiaVsK~~~~e~I~~a~~~G~~~fGENrvQE~~~K~~~l~~-~~i~wHfIG~L 79 (222)
T cd00635 1 IAENLEEVRERIAAAAERAGRDPDEVTLVAVSKTVPAEAIREAIEAGQRDFGENRVQEALDKAEELPD-PDIEWHFIGHL 79 (222)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCC-CCCEEEEECCC
T ss_conf 97899999999999999828895651899998998999999999859962367708999986875488-88259996676
Q ss_pred CCCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEE
Q ss_conf 32001320111000012222200134433333311430368897004665634657000122234431043110011101
Q gi|254780801|r 83 QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC 162 (222)
Q Consensus 83 QsNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMt 162 (222)
||||+|+++++|||||||||+++|++|++++.+.+++++||||||+++|++|+||.|+++.++++.+.++++|+++||||
T Consensus 80 QsNKvk~i~~~~~~IhSvDs~kla~~l~~~~~~~~~~~~vlIQVNis~e~~K~G~~~~e~~~~~~~~~~~~~l~~~GLM~ 159 (222)
T cd00635 80 QTNKVKYAVRLFDLIHSVDSLKLAEELNKRAEKEGRVLDVLVQVNIGGEESKSGVAPEELEELLEEIAALPNLRIRGLMT 159 (222)
T ss_pred CHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 23669987500458887788999999999999729997189998158875556889999999999999668997510365
Q ss_pred CCCCCCCC---HHHHHHHHHHHHHC------CCCEECCCCCHHHHHHHHHCCCEEEECHHHCC
Q ss_conf 15433452---05899999998875------89472247773489999808988997113238
Q gi|254780801|r 163 IPPAMGNP---KPHFYLLSEIAREC------KLTKLSMGMTRDFELAIASGATSVRIGSGIFG 216 (222)
Q Consensus 163 i~p~~~d~---~~~F~~l~~l~~~~------~~~~LSmGMS~D~~~Ai~~Gst~vRiGs~iFG 216 (222)
|||.++|+ ++.|..+++|++++ .+++||||||+||++||++|||||||||+|||
T Consensus 160 i~p~~~d~~~~~~~F~~l~~l~~~l~~~~~~~~~~LSMGMS~Dy~~AI~~GST~VRIGs~iFG 222 (222)
T cd00635 160 IAPLTEDPEEVRPYFRELRELRDELGAKGGVNLKELSMGMSGDFEIAIEEGATLVRIGTAIFG 222 (222)
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHCCCCEEEECCHHCC
T ss_conf 369999979999999999999999876459993988981414599999879997981632109
No 4
>cd06822 PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins. This subfamily contains mostly uncharacterized eukaryotic proteins with similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity. Some members of this subfamily are also referred to as PROSC (Proline synthetase co-transcribed bacterial homolog)
Probab=100.00 E-value=0 Score=540.14 Aligned_cols=210 Identities=37% Similarity=0.452 Sum_probs=193.3
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCC
Q ss_conf 89999999999999999819896441899871899999999999729810001210001111000001258730230244
Q gi|254780801|r 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSL 82 (222)
Q Consensus 3 i~~nl~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~L 82 (222)
|++||+.|+++|+++|++++|+ +|+|||||||+|+++|.++|++|+++||||||||+.+|+..|++ +++|||||||
T Consensus 1 i~~Nl~~I~~~I~~a~~~~~~~--~v~LiAVsK~~~~e~I~~a~~~G~~~fGENrvQE~~~K~~~l~~--~i~WHfIG~L 76 (227)
T cd06822 1 LIANLKRIRQAVKRASKKLPAS--KPRLVAVSKTKPAELIKEAYDAGQRHFGENYVQELIEKAPDLPI--DIKWHFIGHL 76 (227)
T ss_pred CHHHHHHHHHHHHHHHHHCCCC--CCEEEEEECCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCC--CCEEEEECCC
T ss_conf 9668999999999999767999--96899997998999999999869960288609999999984532--5459996453
Q ss_pred CCCHHHHHCCC--CHHCCCCCCCCHHHHHHHHHHHHC--CCEEEEEEEECCCCCCCCCCCCCHHHHHHHHH-HCCCCCCH
Q ss_conf 32001320111--000012222200134433333311--43036889700466563465700012223443-10431100
Q gi|254780801|r 83 QSNKVSEIVSL--FDVIETVSREKTASLLSLEMIKQS--RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNV 157 (222)
Q Consensus 83 QsNKvk~i~~~--~~~Ihsvds~~~a~~L~~~~~~~~--~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i-~~~~~L~i 157 (222)
||||+|+++++ |+|||||||+++|++|++++.+.+ ++++||||||+++|++|+||.|+++.++++.+ ..+|||++
T Consensus 77 QsNKvk~i~~~~~~~~IhSvDs~kla~~l~~~~~~~~~~~~l~vliQVNi~~E~~K~G~~~~e~~~~~~~i~~~~~~l~i 156 (227)
T cd06822 77 QSNKVKKLLKVPNLYMVETVDSEKLADKLNKAWEKLGEREPLKVMVQVNTSGEESKSGLEPSEAVELVKHIIEECPNLKF 156 (227)
T ss_pred CHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 24348999706774466415749999999999997368887069999702786456898999999999999986899768
Q ss_pred HHHEECCCCCCCC----HHHHHHHHHHHHHC----C----CCEECCCCCHHHHHHHHHCCCEEEECHHHCC
Q ss_conf 1110115433452----05899999998875----8----9472247773489999808988997113238
Q gi|254780801|r 158 EGLMCIPPAMGNP----KPHFYLLSEIAREC----K----LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216 (222)
Q Consensus 158 ~GLMti~p~~~d~----~~~F~~l~~l~~~~----~----~~~LSmGMS~D~~~Ai~~Gst~vRiGs~iFG 216 (222)
+|||||||++.|+ +++|..|+++++++ + ..+||||||+||++||++|||||||||+|||
T Consensus 157 ~GLMti~p~~~~~~~~~~~~F~~l~~l~~~l~~~~~~~~~~~eLSMGMS~Dye~AIe~GsT~VRIGs~IFG 227 (227)
T cd06822 157 SGLMTIGSFGYSLSSGPNPDFLCLVDCRKKVCEKLGINPDDLELSMGMSADFEHAIEMGSTNVRVGSAIFG 227 (227)
T ss_pred EEEEEECCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHHHHHHHHCCCCEEECCCHHCC
T ss_conf 89998698998800221399999999999999974999997988685365799999879997983713109
No 5
>TIGR00044 TIGR00044 conserved hypothetical protein TIGR00044; InterPro: IPR011078 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). PLP is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination , , . PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors . Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy . PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalyzed reactions, enzymatic and non-enzymatic . Proteins in this entry occur in archaea, bacteria and eukaryotes. They are encoded by genes which are often co-transcribed with proline biosysnthesis genes , although their function in vivo has not yet been demonstrated. The structure of the yeast protein YBL036C (P38197 from SWISSPROT) has been determined to a resolution of 2.0 A . Similar in structure to the N-terminal domains of alanine racemase and ornithine decarboxylase, it forms a TIM barrel fold which begins with a long N-terminal helix, rather than the classical beta strand found at the beginning of most other TIM barrels. Unlike alanine racemase and ornithine decarboxylase, which are two-domain dimeric proteins, the yeast protein is a single domain monomer. A pyridoxal 5'-phosphate cofactor is covalently bound towards the C-terminal end of the barrel, which is the usual active site in TIM-barrel folds. Some racemase activity was observed for this protein and it was suggested by the authors that it may function as a general racemase ..
Probab=100.00 E-value=0 Score=510.15 Aligned_cols=217 Identities=36% Similarity=0.472 Sum_probs=204.3
Q ss_pred CHHHHHHHHHHHHH-------------HHHHHCCCCHHHCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 98999999999999-------------99998198964418998718999999999997298100012100011110000
Q gi|254780801|r 2 SLGNKLQVFKQKIE-------------NSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL 68 (222)
Q Consensus 2 ~i~~nl~~i~~~I~-------------~a~~~~gR~~~~v~LiaVtK~~~~e~I~~~~~~G~~~fGENrvQE~~~K~~~l 68 (222)
++..+++.|+++|. .+|...||+++.|+||||||++|+++|..+|++|+|.||||||||+.+|...|
T Consensus 3 ~~~~~~~~~~tki~~~~~~~~~vvnaea~~~~~n~n~~~v~LlAVSK~Kp~saI~~~Y~aG~R~FGEN~VQE~~~Ki~~l 82 (250)
T TIGR00044 3 DISHYLEAIKTKIEKAREAVREVVNAEAANVRVNRNPSKVKLLAVSKTKPASAIQAAYDAGQRAFGENYVQELVEKIKLL 82 (250)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCHHCCHHHHHHHHHHHHH
T ss_conf 46255899999999999999999857666542068867047888515676889999974584120000355468999860
Q ss_pred CCCC-C-CCEEEECCCCCCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCC---CEEEEEEEECCCCCCCCCCCCCHHH
Q ss_conf 0125-8-730230244320013201110000122222001344333333114---3036889700466563465700012
Q gi|254780801|r 69 RKEW-D-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR---FLPVYIQVNTGYEIQKSGIMPNQTK 143 (222)
Q Consensus 69 ~~~~-~-i~wHfIG~LQsNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~---~~~vliQVN~~~e~~K~G~~p~el~ 143 (222)
++.. + +.|||||++|+||-+.++.+|+|+|||||+++|.+|++.+++.+. +++||||||++.|++|||+.|+|+.
T Consensus 83 ~~~~~~G~~w~~ig~~~~~K~~~v~~~f~~~ht~D~LkiA~kLn~~r~~~~~DCnpl~~L~QIn~s~Ee~KSG~~~EE~~ 162 (250)
T TIGR00044 83 EDLGVKGLEWHFIGPLQSNKARLVVENFDWVHTIDSLKIAKKLNEQREKLQPDCNPLNVLLQINISDEESKSGIQPEELL 162 (250)
T ss_pred HCCCCCEEHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCHHHHH
T ss_conf 21675611200013002345665215605788789899987798876874777567410245321543465578889999
Q ss_pred HHHHH--H-HCCCCCCHHHHEECCCCCCCC---HHHHHHHHHHHHHCC-------CCEECCCCCHHHHHHHHHCCCEEEE
Q ss_conf 22344--3-104311001110115433452---058999999988758-------9472247773489999808988997
Q gi|254780801|r 144 DFVIL--C-RQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK-------LTKLSMGMTRDFELAIASGATSVRI 210 (222)
Q Consensus 144 ~l~~~--i-~~~~~L~i~GLMti~p~~~d~---~~~F~~l~~l~~~~~-------~~~LSmGMS~D~~~Ai~~Gst~vRi 210 (222)
..+.. + ..||+|+++|||||||.+.++ ...|..+..+++.++ ..+||||||+||+.||++|||||||
T Consensus 163 ~~~~~ff~SE~lk~LkL~GLM~I~a~~~~~~~~~~~f~~~~~l~~~~K~~~~~~~~d~LSMGMSdD~~~AIa~G~t~vRI 242 (250)
T TIGR00044 163 ELASQFFLSEELKHLKLRGLMTIGAPTDSEEDQEESFREMKKLFEQIKQASPFSLIDTLSMGMSDDFEEAIAAGATMVRI 242 (250)
T ss_pred HHHHHHHHHHHCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 89898888761212231033347988888888999999999999986553114531010257754379999860157778
Q ss_pred CHHHCCCC
Q ss_conf 11323899
Q gi|254780801|r 211 GSGIFGER 218 (222)
Q Consensus 211 Gs~iFG~R 218 (222)
||.|||+|
T Consensus 243 GT~iFGaR 250 (250)
T TIGR00044 243 GTAIFGAR 250 (250)
T ss_pred HHHHHCCC
T ss_conf 76631479
No 6
>KOG3157 consensus
Probab=100.00 E-value=0 Score=480.41 Aligned_cols=215 Identities=36% Similarity=0.469 Sum_probs=200.0
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCC
Q ss_conf 99999999999999819896441899871899999999999729810001210001111000001258730230244320
Q gi|254780801|r 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85 (222)
Q Consensus 6 nl~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQsN 85 (222)
-|..|.++|++++.+.+|+.+.++|||||||+|++.|.++|++|||+||||||||+.+|++.++. ||+||||||||||
T Consensus 10 ~L~~v~~rv~qa~~~~~r~~~~~rlvaVSKtKPa~~i~~~Y~~GqR~FGENYVQEl~eKap~lp~--DI~WHFIG~lQsn 87 (244)
T KOG3157 10 ALRAVIERVQQAVNQRPRDENAVRLVAVSKTKPASLIIEAYDAGQRHFGENYVQELIEKAPLLPD--DIKWHFIGHLQSN 87 (244)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC--CCEEEEECHHHHC
T ss_conf 99999999999998444566644899962578689999998717270458899999984624762--1326564413231
Q ss_pred HHHHH--CCCCHHCCCCCCCCHHHHHHHHHHHHCC--CEEEEEEEECCCCCCCCCCCCCHHHHHHHHHH-CCCCCCHHHH
Q ss_conf 01320--1110000122222001344333333114--30368897004665634657000122234431-0431100111
Q gi|254780801|r 86 KVSEI--VSLFDVIETVSREKTASLLSLEMIKQSR--FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGL 160 (222)
Q Consensus 86 Kvk~i--~~~~~~Ihsvds~~~a~~L~~~~~~~~~--~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~-~~~~L~i~GL 160 (222)
|+|++ ++++.+|+|||+.|+|.++++.+.+.+. +++||+||||++|++|+|+.|.++.+++++++ +|+||++.||
T Consensus 88 K~kkl~svpnL~~vetVDseK~A~~ld~a~~k~g~~~PL~V~VQvNTSGEd~K~Giepse~~~l~~~i~~~c~nL~f~Gl 167 (244)
T KOG3157 88 KCKKLLSVPNLYSVETVDSEKKARKLDSAWSKLGPDNPLKVLVQVNTSGEDSKSGIEPSEAPELAEHIKSECKNLKFSGL 167 (244)
T ss_pred CCCHHCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 10011067864788731269898888899995299997289999616775445798836659999999986876345204
Q ss_pred EECCCCCCC----CHHHHHHHHHHHHH----CCCC----EECCCCCHHHHHHHHHCCCEEEECHHHCCCCCCCC
Q ss_conf 011543345----20589999999887----5894----72247773489999808988997113238999998
Q gi|254780801|r 161 MCIPPAMGN----PKPHFYLLSEIARE----CKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222 (222)
Q Consensus 161 Mti~p~~~d----~~~~F~~l~~l~~~----~~~~----~LSmGMS~D~~~Ai~~Gst~vRiGs~iFG~R~~~t 222 (222)
||||.++.+ +.+.|..|.+++++ ++.. +||||||+||+.||+.|||-|||||.|||+|||+-
T Consensus 168 MTIGs~~~s~ss~eNpDF~~L~~~r~~ic~~lg~~~dq~eLSMGMS~DF~~AIe~Gst~VRvGStIFG~R~y~k 241 (244)
T KOG3157 168 MTIGSFDNSHSSGENPDFQVLVKLRESICKKLGIPADQVELSMGMSADFLLAIEQGSTNVRVGSTIFGAREYKK 241 (244)
T ss_pred EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCC
T ss_conf 77535666556899965799999999999984898678100235636699999808853773252126788888
No 7
>pfam01168 Ala_racemase_N Alanine racemase, N-terminal domain.
Probab=99.98 E-value=2.9e-31 Score=231.66 Aligned_cols=204 Identities=26% Similarity=0.324 Sum_probs=175.6
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHCEEEEECCC----CCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECC
Q ss_conf 9999999999999981989644189987189----999999999972981000121000111100000125873023024
Q gi|254780801|r 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKM----VDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGS 81 (222)
Q Consensus 6 nl~~i~~~I~~a~~~~gR~~~~v~LiaVtK~----~~~e~I~~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~ 81 (222)
|++.++.+++.....+++ .++|+||+|+ +....|..+++.|++.||++++||+.+-.... ++..|+++|+
T Consensus 2 dl~~l~~Ni~~i~~~~~~---~~~l~aVvK~nayG~g~~~i~~~~~~g~~~f~v~~~~Ea~~lr~~~---~~~~Il~l~~ 75 (216)
T pfam01168 2 DLDALRHNIRALRERAGR---PVKLMAVVKANAYGHGAVRVARALAAGADGFGVATLQEALELREAG---ITAPILVLGF 75 (216)
T ss_pred CHHHHHHHHHHHHHHCCC---CCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEHHHHHHHHHHC---CCCCEEEECC
T ss_conf 779999999999985699---9989999777777866999999998089855980099999999818---9870777368
Q ss_pred CCCCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHE
Q ss_conf 43200132011100001222220013443333331143036889700466563465700012223443104311001110
Q gi|254780801|r 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLM 161 (222)
Q Consensus 82 LQsNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLM 161 (222)
++.++++.++++ +++++|||.+.++.+++.+.+.+++++|+||||+| .+|.||.++++.++++.+. +++++++|+|
T Consensus 76 ~~~~~~~~~~~~-~~~~~v~s~~~l~~l~~~~~~~~~~~~v~l~vdtG--m~R~G~~~~~~~~~~~~i~-~~~l~~~Gi~ 151 (216)
T pfam01168 76 FPPEELALAAEY-DLIPTVDSLEQAEALSAAAAKLGRPLRVHLKVDTG--MGRLGFTPEELPALAEALA-LPGLRLEGLM 151 (216)
T ss_pred CCHHHHHHHHHC-CCEEEECCHHHHHHHHHHHHHCCCCEEEEEEEEEC--CCCCCCCHHHHHHHHHHHH-CCCCCEEEEE
T ss_conf 996999999985-97899788999999999999859980899999747--8768879999999999985-5999678999
Q ss_pred ECCCCCCCC----HHHHHHHHHHHHHCC--CCEECCCCCHHHHHHH-HHCCCEEEECHHHCCCCC
Q ss_conf 115433452----058999999988758--9472247773489999-808988997113238999
Q gi|254780801|r 162 CIPPAMGNP----KPHFYLLSEIARECK--LTKLSMGMTRDFELAI-ASGATSVRIGSGIFGERP 219 (222)
Q Consensus 162 ti~p~~~d~----~~~F~~l~~l~~~~~--~~~LSmGMS~D~~~Ai-~~Gst~vRiGs~iFG~R~ 219 (222)
|..|..+++ +.+|..++++.+.++ ...+|||||+++..+. +.|.||||+|++|||.+|
T Consensus 152 tH~~~~d~~~~~~~~q~~~f~~~~~~l~~~~~~~s~~nS~~~~~~~~~~~~~~vR~G~~lyG~~p 216 (216)
T pfam01168 152 THFACADEPDATNRAQLARFRELADALEAAGPVLSLGNSAALLLAPLHEGFDMVRPGIALYGARP 216 (216)
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEHHCCHHHHHHHHHCCCCEEEECHHHCCCCC
T ss_conf 50588789758999999999999998656899985116188985375648997830721118798
No 8
>cd06808 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes. The fold type III PLP-dependent enzyme family is predominantly composed of two-domain proteins with similarity to bacterial alanine racemases (AR) including eukaryotic ornithine decarboxylases (ODC), prokaryotic diaminopimelate decarboxylases (DapDC), biosynthetic arginine decarboxylases (ADC), carboxynorspermidine decarboxylases (CANSDC), and similar proteins. AR-like proteins contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. These proteins play important roles in the biosynthesis of amino acids and polyamine. The family also includes the single-domain YBL036c-like proteins, which contain a single PLP-binding TIM-barrel domain without any N- or C-terminal extensions. Due to the lack of a second domain, these p
Probab=99.78 E-value=4.2e-19 Score=149.88 Aligned_cols=197 Identities=17% Similarity=0.172 Sum_probs=158.9
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHC-CCCCCCCCEEEECC
Q ss_conf 89999999999999999819896441899871899999999999729810001210001111000-00125873023024
Q gi|254780801|r 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP-LRKEWDVQLRFIGS 81 (222)
Q Consensus 3 i~~nl~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~~~~~~G~~~fGENrvQE~~~K~~~-l~~~~~i~wHfIG~ 81 (222)
|++|++.+++.+ +..+++.+|.|..+...|...+..+...|+...++|+...... ++ .-+|.|.|+
T Consensus 1 ir~N~~~lk~~l----------~~~~~i~~avKAn~~~~v~~~l~~~g~g~~vas~~E~~~~~~~G~~---~~~Il~~g~ 67 (211)
T cd06808 1 IRHNYRRLREAA----------PAGITLFAVVKANANPEVARTLAALGTGFDVASLGEALLLRAAGIP---PEPILFLGP 67 (211)
T ss_pred CHHHHHHHHHHC----------CCCCEEEEEEECCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCC---HHHHCCCCC
T ss_conf 979999999868----------9998899998308829999999973890789609999999975997---556101566
Q ss_pred CCC-CHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHH
Q ss_conf 432-0013201110000122222001344333333114303688970046656346570001222344310431100111
Q gi|254780801|r 82 LQS-NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160 (222)
Q Consensus 82 LQs-NKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GL 160 (222)
..+ +.++.++++-....++||...+++|++.+.+.++.++|+|+||++.+.+|+|+.++++.++++.+.++++|++.|+
T Consensus 68 ~~~~~~~~~a~~~~~~~~~vds~~~l~~l~~~a~~~~~~~~v~lrintg~~~~rfG~~~~e~~~~~~~~~~~~~l~l~Gi 147 (211)
T cd06808 68 CKQVSELEDAAEQGVIVVTVDSLEELEKLEEAALKAGPPARVLLRIDTGDENGKFGVRPEELKALLERAKELPHLRLVGL 147 (211)
T ss_pred CCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 47668999999961224010677888778998885388851477672277767778899999999999996898666114
Q ss_pred EE-CCCCCCCCH---HHHHHHHHHHHHC-----CCCEECCCCCHHHHHH---HHHCCCEEEECH
Q ss_conf 01-154334520---5899999998875-----8947224777348999---980898899711
Q gi|254780801|r 161 MC-IPPAMGNPK---PHFYLLSEIAREC-----KLTKLSMGMTRDFELA---IASGATSVRIGS 212 (222)
Q Consensus 161 Mt-i~p~~~d~~---~~F~~l~~l~~~~-----~~~~LSmGMS~D~~~A---i~~Gst~vRiGs 212 (222)
|+ +++.+.|+. ..+..+.++.+.+ .+..+++|+|--...- -...-+|||.|+
T Consensus 148 ~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~i~iGgg~gv~y~~e~p~~~~~~vrpG~ 211 (211)
T cd06808 148 HTHFGSADEDYSPFVEALSRFVAALDQLGELGIDLEQLSIGGSFAILYLQELPLGTFIIVEPGR 211 (211)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCHHHEEEECCCC
T ss_conf 6654344389899999999999999999975969798996998243789889826704634799
No 9
>cd06815 PLPDE_III_AR_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase-like 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=99.70 E-value=4.2e-16 Score=129.63 Aligned_cols=205 Identities=21% Similarity=0.263 Sum_probs=153.8
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHCEEEEECCCCC--HHHHHHHHHCCCCCCCCCCCHHHHHHHHC-CCCCCCCCEEEECCC
Q ss_conf 999999999999998198964418998718999--99999999729810001210001111000-001258730230244
Q gi|254780801|r 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVD--SKKIRVALSCGQVIFAENKLQEAKKKWIP-LRKEWDVQLRFIGSL 82 (222)
Q Consensus 6 nl~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~--~e~I~~~~~~G~~~fGENrvQE~~~K~~~-l~~~~~i~wHfIG~L 82 (222)
||++++.+++...+.++ +..+++++|+|..- .+-.+++.++|...||..|++|+.+=... + +...=++|.-
T Consensus 7 dL~~l~~N~~~l~~~~~--~~gi~~~~VvKa~aG~~~iA~~l~~~G~~~lavari~e~~~LR~~Gi----~~pillL~~p 80 (353)
T cd06815 7 NLSKIRHNAKVLVELCK--SRGIEVTGVTKVVCGDPEIAEALLEGGITHLADSRIENLKKLKDLGI----SGPKMLLRIP 80 (353)
T ss_pred EHHHHHHHHHHHHHHHH--HCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEECHHHHHHHHHCCC----CCCEEEECCC
T ss_conf 39999999999999760--54988999984468959999999987999999702899999997599----9978997268
Q ss_pred CCCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEE
Q ss_conf 32001320111000012222200134433333311430368897004665634657000122234431043110011101
Q gi|254780801|r 83 QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC 162 (222)
Q Consensus 83 QsNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMt 162 (222)
--.-+..++++.+. -.+.++..+++|+..|.+.++..+|.|.|.+| ..|-||.|+|+.++++++.++|||++.|++|
T Consensus 81 ~~se~~~vv~~~di-s~~se~~~i~aLs~~A~~~gk~~~V~l~VDtG--m~R~Gv~ped~~~~~~~I~~lp~i~l~GI~T 157 (353)
T cd06815 81 MLSEVEDVVKYADI-SLNSELETIKALSEEAKKQGKIHKIILMVDLG--DLREGVLPEDLLDFVEEILKLPGIELVGIGT 157 (353)
T ss_pred CHHHHHHHHHHCEE-EECCCHHHHHHHHHHHHHCCCEEEEEEEEECC--CCCCCCCHHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 88899999873304-20287999999999999869847899999689--9957889899999999986599959999888
Q ss_pred -CCCCCC--CCHHHHHHHHHHHHHC------CCCEECCCCCHHHHHHHHHC----CCEEEECHHHC-CCCC
Q ss_conf -154334--5205899999998875------89472247773489999808----98899711323-8999
Q gi|254780801|r 163 -IPPAMG--NPKPHFYLLSEIAREC------KLTKLSMGMTRDFELAIASG----ATSVRIGSGIF-GERP 219 (222)
Q Consensus 163 -i~p~~~--d~~~~F~~l~~l~~~~------~~~~LSmGMS~D~~~Ai~~G----st~vRiGs~iF-G~R~ 219 (222)
.+-+.+ ...+.+..+.++++.+ ++...|.|-|.-+.++...+ -|++|+|.+|| |--|
T Consensus 158 hfaC~~gv~pt~~~~~~l~~~~~~ie~~~g~~l~~iSgGnS~~l~~~~~~~~~~~IN~lRiGe~i~~G~~~ 228 (353)
T cd06815 158 NLGCYGGVLPTEENMGKLVELKEEIEKEFGIKLPIISGGNSASLPLLLKGELPGGINQLRIGEAILLGRET 228 (353)
T ss_pred CHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCCCCCCCCCCCCEEEEECCC
T ss_conf 76357888999999999999999999984998766970537768988558985432103333158961257
No 10
>cd00430 PLPDE_III_AR Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase. This family includes predominantly bacterial alanine racemases (AR), some serine racemases (SerRac), and putative bifunctional enzymes containing N-terminal UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase (murF) and C-terminal AR domains. These proteins are fold type III PLP-dependent enzymes that play essential roles in peptidoglycan biosynthesis. AR catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. SerRac converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. murF catalyzes the addition of D-Ala-D-Ala to UDPMurNAc-tripeptide, the final step in the synthesis of the cytoplasmic precursor of bacterial cell wall peptidoglycan. Members of this family contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with activ
Probab=99.55 E-value=8.4e-14 Score=114.18 Aligned_cols=206 Identities=18% Similarity=0.219 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHCEEEEECCCC----CHHHHHH-HHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEC
Q ss_conf 99999999999999819896441899871899----9999999-997298100012100011110000012587302302
Q gi|254780801|r 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMV----DSKKIRV-ALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80 (222)
Q Consensus 6 nl~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~----~~e~I~~-~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG 80 (222)
|++.++.+++......+ +..+++||.|-- ....|.. ++++|++.||--..+|+..=..... +...=..|
T Consensus 7 dl~al~~N~~~lr~~~~---~~~ki~aVVKAnAYGhG~~~va~~l~~~Gv~~faVa~~~EA~~LR~~g~---~~~Ilvl~ 80 (367)
T cd00430 7 DLDALRHNLRVIRRLLG---PGTKIMAVVKADAYGHGAVEVAKALEEAGADYFAVATLEEALELREAGI---TAPILVLG 80 (367)
T ss_pred EHHHHHHHHHHHHHHCC---CCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCC---CCCEEEEC
T ss_conf 19999999999998568---9986999996554657789999999987979999854999999997299---99859966
Q ss_pred CCCCCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHH
Q ss_conf 44320013201110000122222001344333333114303688970046656346570001222344310431100111
Q gi|254780801|r 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160 (222)
Q Consensus 81 ~LQsNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GL 160 (222)
+....-++.++++ +++-+|.|...++.+...+.+.+++.+|+|+||+| .+|.||.++|+.++++.+.+++++++.|+
T Consensus 81 ~~~~~~~~~~~~~-~l~~~i~s~~~l~~l~~~~~~~~~~~~vhlkiDTG--M~RlG~~~~e~~~~~~~l~~~~~l~~~gi 157 (367)
T cd00430 81 GTPPEEAEEAIEY-DLTPTVSSLEQAEALSAAAARLGKTLKVHLKIDTG--MGRLGFRPEEAEELLEALKALPGLELEGV 157 (367)
T ss_pred CCCHHHHHHHHHC-CEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEECC--CCCCCCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 8997999999961-80768786999999999988759982399998068--87578897999999999986899618899
Q ss_pred EE-CCCCCCC--C--HHHHHHHHHHHHHC-----CCCEECCCCCHHHHHHHHHCCCEEEECHHHCCCCCC
Q ss_conf 01-1543345--2--05899999998875-----894722477734899998089889971132389999
Q gi|254780801|r 161 MC-IPPAMGN--P--KPHFYLLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220 (222)
Q Consensus 161 Mt-i~p~~~d--~--~~~F~~l~~l~~~~-----~~~~LSmGMS~D~~~Ai~~Gst~vRiGs~iFG~R~~ 220 (222)
|| .+..+++ + ..++..+.++.+.+ .....|+.-|.-.-.--+.--+|||+|.++||-.|.
T Consensus 158 ~SHla~ad~~~~~~~~~Q~~~F~~~~~~l~~~~~~~~~~h~aNS~~~l~~~~~~~d~vRpGi~LYG~~p~ 227 (367)
T cd00430 158 FTHFATADEPDKAYTRRQLERFLEALAELEEAGIPPPLKHLANSAAILRFPEAHFDMVRPGIALYGLYPS 227 (367)
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHCCCCCCCCEEECCEEEECCCCC
T ss_conf 7402357887707889999999999999986489976376016897773950038806016544268887
No 11
>PRK00053 alr alanine racemase; Reviewed
Probab=99.39 E-value=6e-12 Score=101.72 Aligned_cols=203 Identities=19% Similarity=0.218 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHCEEEEECCC----CCHHHHHH-HHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEC
Q ss_conf 9999999999999981989644189987189----99999999-997298100012100011110000012587302302
Q gi|254780801|r 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKM----VDSKKIRV-ALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80 (222)
Q Consensus 6 nl~~i~~~I~~a~~~~gR~~~~v~LiaVtK~----~~~e~I~~-~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG 80 (222)
|+..++.+++...+.. ++ .+++||-|- +....|.. +.++|++.||--.++|+.+=...- .+...-..|
T Consensus 9 dl~al~~N~~~i~~~~---~~-~~i~aVVKAnAYGhG~~~va~~l~~~Gv~~faVa~~~EAi~LR~~g---~~~~Ilvl~ 81 (360)
T PRK00053 9 DLDALAHNLRQLRQLA---GS-SKLMAVVKANAYGHGAVEVAKTLLEAGADGFGVATLEEALELREAG---ITAPILLLG 81 (360)
T ss_pred EHHHHHHHHHHHHHHC---CC-CEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCC---CCCCEEEEC
T ss_conf 3999999999999658---99-8099999442254889999999998797999991899999999639---999989976
Q ss_pred CCCCCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHH
Q ss_conf 44320013201110000122222001344333333114303688970046656346570001222344310431100111
Q gi|254780801|r 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160 (222)
Q Consensus 81 ~LQsNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GL 160 (222)
.....-.+.+++ .++.-+|.|...++.+++.+. ++.++|.|.|+|| .+|.||.++|+.++++.+..+++|++.|+
T Consensus 82 ~~~~~~~~~~~~-~~l~~~i~s~~~l~~~~~~~~--~~~~~vhlkiDTG--M~RlG~~~~e~~~~~~~i~~~~~l~~~gi 156 (360)
T PRK00053 82 GFFEADLPLIVA-YDIETAVHSLEQLRALEKAAL--SAPLKVHLKVDTG--MHRLGVRPEEAEAALERLRALPNLRLEGI 156 (360)
T ss_pred CCCHHHHHHHHH-CCCEEEECCHHHHHHHHHHCC--CCCCEEEEEECCC--CCCCCCCHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 999799999997-598899998999999997461--5895499998589--87478887899999999985899827899
Q ss_pred EECCCCCCCC-----HHHHHHHHHHHHHCCC--CEECCCCCHHHHHHHHHCCCEEEECHHHCCCCCC
Q ss_conf 0115433452-----0589999999887589--4722477734899998089889971132389999
Q gi|254780801|r 161 MCIPPAMGNP-----KPHFYLLSEIARECKL--TKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220 (222)
Q Consensus 161 Mti~p~~~d~-----~~~F~~l~~l~~~~~~--~~LSmGMS~D~~~Ai~~Gst~vRiGs~iFG~R~~ 220 (222)
||==+..+++ ..++..+.++.+.+.. ...|+.-|.-.-.--+..-+|||+|.++||-.|.
T Consensus 157 ~SHla~AD~~~~~~~~~Q~~~F~~~~~~l~~~~~~~h~aNSag~l~~~~~~~d~VR~Gi~lYG~~P~ 223 (360)
T PRK00053 157 MSHFATADEPDNSYTDEQLARFKAFLAGLPGKGKVRHLANSAAILRWPDLHFDWVRPGIALYGYSPS 223 (360)
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEHHCCHHHHCCCCCCCCEECCCCEEECCCCC
T ss_conf 7411247888858999999999999986310796986423698770973347715238010279877
No 12
>PRK13340 alanine racemase; Reviewed
Probab=99.37 E-value=1.2e-11 Score=99.57 Aligned_cols=202 Identities=16% Similarity=0.206 Sum_probs=139.2
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHCEEEEECCC----CCHHHHH-HHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEE
Q ss_conf 8999999999999999981989644189987189----9999999-9997298100012100011110000012587302
Q gi|254780801|r 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKM----VDSKKIR-VALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLR 77 (222)
Q Consensus 3 i~~nl~~i~~~I~~a~~~~gR~~~~v~LiaVtK~----~~~e~I~-~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wH 77 (222)
|+.|++.|++.+ +..++++||-|- +....|. .+++.|++.||--.+.|+.+=...- .+..-=
T Consensus 49 l~~N~~~ir~~l----------~~~~ki~AVVKAnAYGhG~~~va~~l~~~G~~~faVA~~~EAi~LR~~g---i~~pIl 115 (404)
T PRK13340 49 LDFNIKKFKRRL----------AANSKVCAVMKADAYGHGIEGVMPTIIENNVPCIAIASNEEARRVRELG---FTGPLL 115 (404)
T ss_pred HHHHHHHHHHHC----------CCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCC---CCCCEE
T ss_conf 999999999856----------9999899999111020769999999998799999994999999999659---999979
Q ss_pred EECCCCCCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEC-CCCCCCCCCCCCHHHHHHHH--HHCCCC
Q ss_conf 302443200132011100001222220013443333331143036889700-46656346570001222344--310431
Q gi|254780801|r 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNT-GYEIQKSGIMPNQTKDFVIL--CRQKYQ 154 (222)
Q Consensus 78 fIG~LQsNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~-~~e~~K~G~~p~el~~l~~~--i~~~~~ 154 (222)
..|......++.+++ .++.-+|.|...++.+++.+.+.+++++|.|.||+ | .+|-||.|++...+.+. +...++
T Consensus 116 vl~~~~~~~~~~~~~-~~l~~~I~s~~~l~~l~~~a~~~~~~~~vHlkiDTtG--M~RlG~~~~~~~~~~~~~~i~~~~~ 192 (404)
T PRK13340 116 RVRSAEPAEIEQALR-YRLEELIGDDEQAKLLANIAKKNGKPIDIHLALNSGG--MGRNGLDPSTFRGAWEAVRIATLPS 192 (404)
T ss_pred EEECCCHHHHHHHHH-CCCCEEECCHHHHHHHHHHHHHHCCCEEEEEEECCCC--CCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 991889899999997-6992599979999999999997199547999981688--6667988102899999999960899
Q ss_pred CCHHHHEEC-CCCCCC-CHH---HHHHHHH-HHHHCC----CCEECCCCCHHHHHHHHHCCCEEEECHHHCCCCCC
Q ss_conf 100111011-543345-205---8999999-988758----94722477734899998089889971132389999
Q gi|254780801|r 155 LNVEGLMCI-PPAMGN-PKP---HFYLLSE-IARECK----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220 (222)
Q Consensus 155 L~i~GLMti-~p~~~d-~~~---~F~~l~~-l~~~~~----~~~LSmGMS~D~~~Ai~~Gst~vRiGs~iFG~R~~ 220 (222)
|++.|+||= +..+++ .+. .|..... +.+... -..+++.-|.-.-.-=+.-.+|||+|-+++|.-|.
T Consensus 193 l~v~Gi~SHfa~AD~~~~~~q~~~F~~~~~~l~~~~~~~~~~~~~H~aNSagil~~p~~~~D~VRpGi~LYG~~P~ 268 (404)
T PRK13340 193 LGIVGIMTHFPNEDAGEVRWKLARFDQATQGLIGEAGLKREKITLHVANSYATLNVPEAHLDMVRPGGVLYGDSPA 268 (404)
T ss_pred CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHCCCHHHCCCCCCCCEEECCCCC
T ss_conf 7778998204889997159999999999986788752678865399837488760933106712677056688988
No 13
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional
Probab=99.37 E-value=8.6e-12 Score=100.64 Aligned_cols=202 Identities=15% Similarity=0.214 Sum_probs=139.3
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHCEEEEECCC----CCHHHHH-HHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEE
Q ss_conf 8999999999999999981989644189987189----9999999-9997298100012100011110000012587302
Q gi|254780801|r 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKM----VDSKKIR-VALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLR 77 (222)
Q Consensus 3 i~~nl~~i~~~I~~a~~~~gR~~~~v~LiaVtK~----~~~e~I~-~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wH 77 (222)
|+.||+.++.++ ++.++++||-|- +..-+|. .+.++|++.||--.++|+.+=...--. .+| +
T Consensus 472 i~~N~~~~r~~l----------~p~tkimaVVKAdAYGhGa~evAk~l~~~gvd~~aVA~~~Ea~~LR~~Gi~-~pI-l- 538 (824)
T PRK11930 472 IVHNLNYYRSKL----------KPETKMMCMVKAFAYGAGSYEIAKTLQEHRVDYLAVAVADEGSELRKAGIT-LPI-M- 538 (824)
T ss_pred HHHHHHHHHHHC----------CCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCC-CCE-E-
T ss_conf 999999999747----------999769999963446634999999999849999999259999999974999-987-9-
Q ss_pred EECCCCCCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCC-CEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 30244320013201110000122222001344333333114-30368897004665634657000122234431043110
Q gi|254780801|r 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR-FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLN 156 (222)
Q Consensus 78 fIG~LQsNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~-~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~ 156 (222)
-.|+.+ .-+..+++ .++..+|.|...++.+.+.+.+.+. ..+|.|.|+|| .+|-||.|+|+.+++..+...++|+
T Consensus 539 vl~~~~-~~~~~~~~-~~l~~~v~s~~~l~~l~~~~~~~~~~~~~vHlkiDTG--M~RlGf~~~e~~~l~~~l~~~~~l~ 614 (824)
T PRK11930 539 VMNPEL-TSFKTIID-YKLEPEVYSFHLLDALIKEAEKKGLTNFPIHIKIDTG--MHRLGFEPEDIPELIERLKKQSAVI 614 (824)
T ss_pred EECCCH-HHHHHHHH-HCCCCEECCHHHHHHHHHHHHHCCCCCCEEEEEECCC--CCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 934866-77999998-0891107879999999999997299974089997599--9978599899999999998289985
Q ss_pred HHHHEECCCCCCCC------HHHHHHHHHHHHHCC-----CCEECCCCCHHHHHHHHHCCCEEEECHHHCCCCCCC
Q ss_conf 01110115433452------058999999988758-----947224777348999980898899711323899999
Q gi|254780801|r 157 VEGLMCIPPAMGNP------KPHFYLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221 (222)
Q Consensus 157 i~GLMti~p~~~d~------~~~F~~l~~l~~~~~-----~~~LSmGMS~D~~~Ai~~Gst~vRiGs~iFG~R~~~ 221 (222)
+.|+||==+..+++ +.++..+.++.+.++ ....++--|.-...-=+.--+|||+|-+++|--|.+
T Consensus 615 ~~gi~SHfa~aD~~~~~~~t~~Q~~~F~~~~~~l~~~~~~~~~~H~aNSagi~~~p~~~~DmVR~Gi~LYG~~p~~ 690 (824)
T PRK11930 615 VRSVFSHLAGSDDPQHDDFTRQQIELFDKASEELQSALNYKPLRHILNTSGIERFPGAQYDMVRLGIGLYGVSASG 690 (824)
T ss_pred EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHCCCCCCCCEEEECCEEECCCCCC
T ss_conf 5366745888899998579999999999999999871688762786078988659844698685283516869888
No 14
>cd06826 PLPDE_III_AR2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme, Alanine Racemase 2. This subfamily is composed of bacterial alanine racemases (EC 5.1.1.1) with similarity to Yersinia pestis and Vibrio cholerae alanine racemase (AR) 2. ARs catalyze the interconversion between L- and D-alanine, an essential component of the peptidoglycan layer of bacterial cell walls. These proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=99.32 E-value=2.3e-11 Score=97.83 Aligned_cols=203 Identities=14% Similarity=0.186 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHCEEEEECC----CCCHHHHH-HHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEE
Q ss_conf 899999999999999998198964418998718----99999999-9997298100012100011110000012587302
Q gi|254780801|r 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKIR-VALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLR 77 (222)
Q Consensus 3 i~~nl~~i~~~I~~a~~~~gR~~~~v~LiaVtK----~~~~e~I~-~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wH 77 (222)
|+.|++.+++.+ ++.++++||-| ++....|. .+++.|++.||--+++|+.+=...- .+..--
T Consensus 11 l~~N~~~ir~~~----------~~~~ki~aVVKAnAYGhG~~~va~~l~~~gv~~faVa~~~EA~~LR~~g---~~~~Il 77 (365)
T cd06826 11 FENNIKLLKKLL----------GGNTKLCAVMKADAYGHGIALVMPSIIAQNIPCVGITSNEEARVVREAG---FTGKIL 77 (365)
T ss_pred HHHHHHHHHHHC----------CCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHCC---CCCCEE
T ss_conf 999999999638----------9999799999562022878999999998799999968799999999659---999879
Q ss_pred EECCCCCCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEC-CCCCCCCCCCCCHHHHHHH--HHHCCCC
Q ss_conf 302443200132011100001222220013443333331143036889700-4665634657000122234--4310431
Q gi|254780801|r 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNT-GYEIQKSGIMPNQTKDFVI--LCRQKYQ 154 (222)
Q Consensus 78 fIG~LQsNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~-~~e~~K~G~~p~el~~l~~--~i~~~~~ 154 (222)
.+|.....-+..++. .+...+|.+...++.++..+.+.++++++.|.||+ | .+|.||.+++...+.+ .+...++
T Consensus 78 ~l~~~~~~e~~~~~~-~~l~~~i~s~~~~~~l~~~~~~~~~~~~vhlkiDT~G--M~RlG~~~~~~~~~~~~~~~~~~~~ 154 (365)
T cd06826 78 RVRTATPSEIEDALA-YNIEELIGSLDQAEQIDSLAKRHGKTLPVHLALNSGG--MSRNGLELSTAQGKEDAVAIATLPN 154 (365)
T ss_pred EECCCCHHHHHHHHH-CCCCCEECCHHHHHHHHHHHHHCCCCCEEEEEECCCC--CCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 986889799999997-0686099819999999999987099833899972699--7757867340789999999973899
Q ss_pred CCHHHHEE-CCCCCCC-CHH---HHHHHH-HHHHHCCC--C--EECCCCCHHHHHHHHHCCCEEEECHHHCCCCCCC
Q ss_conf 10011101-1543345-205---899999-99887589--4--7224777348999980898899711323899999
Q gi|254780801|r 155 LNVEGLMC-IPPAMGN-PKP---HFYLLS-EIARECKL--T--KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221 (222)
Q Consensus 155 L~i~GLMt-i~p~~~d-~~~---~F~~l~-~l~~~~~~--~--~LSmGMS~D~~~Ai~~Gst~vRiGs~iFG~R~~~ 221 (222)
|++.|+|| ++..+++ ... .|.... .+.+...+ . .+++.-|.-.-.-=+.--+|||+|.++||-.|..
T Consensus 155 l~i~Gi~SH~a~ad~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~H~anS~~~l~~~~~~~d~vR~Gi~lYG~~p~~ 231 (365)
T cd06826 155 LKIVGIMTHFPVEDEDDVRAKLARFNEDTAWLISNAKLKREKITLHAANSFATLNVPEAHLDMVRPGGILYGDTPPS 231 (365)
T ss_pred CCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHCCCCCCCCCCCCCEEEECCCCCC
T ss_conf 85799983347889874099999999999999986267777561886143676559411478455784637869777
No 15
>cd06827 PLPDE_III_AR_proteobact Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases. This subfamily is composed mainly of proteobacterial alanine racemases (EC 5.1.1.1), fold type III PLP-dependent enzymes that catalyze the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. hese proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=99.31 E-value=2.7e-11 Score=97.27 Aligned_cols=202 Identities=16% Similarity=0.168 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHCEEEEECC----CCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECC
Q ss_conf 999999999999998198964418998718----9999999999972981000121000111100000125873023024
Q gi|254780801|r 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGS 81 (222)
Q Consensus 6 nl~~i~~~I~~a~~~~gR~~~~v~LiaVtK----~~~~e~I~~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~ 81 (222)
+++.++.+++...+.+ + ..+++||-| ++....|..++ .|.+.||--.++|+.+=...-.+ .+| +=|=|.
T Consensus 7 dl~al~~N~~~ir~~~---~-~~~i~aVVKAnAYGhG~~~va~~l-~~~~~faVa~~~Ea~~LR~~g~~-~~I-lvL~g~ 79 (354)
T cd06827 7 DLAALRHNLRLVRELA---P-NSKILAVVKANAYGHGLVRVAKAL-ADADGFAVACIEEALALREAGIT-KPI-LLLEGF 79 (354)
T ss_pred EHHHHHHHHHHHHHHC---C-CCEEEEEEEECCCCCCHHHHHHHH-HCCCEEEEEEHHHHHHHHHCCCC-CCE-EEEECC
T ss_conf 7999999999999768---9-983999998463648699999998-56997999489999999973999-866-999378
Q ss_pred CCCCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHE
Q ss_conf 43200132011100001222220013443333331143036889700466563465700012223443104311001110
Q gi|254780801|r 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLM 161 (222)
Q Consensus 82 LQsNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLM 161 (222)
....-++.+++ .++.-+|.|...++.+.+. +.+++++|.|+|+|| .+|.||.++|+.++++.+..++++++.|+|
T Consensus 80 ~~~~~~~~~~~-~~l~~~i~s~~~l~~l~~~--~~~~~~~vhlkiDTG--M~RlG~~~~e~~~~~~~l~~~~~l~~~gi~ 154 (354)
T cd06827 80 FSADELPLAAE-YNLWTVVHSEEQLEWLEQA--ALSKPLNVWLKLDSG--MHRLGFSPEEYAAAYQRLKASPNVASIVLM 154 (354)
T ss_pred CCHHHHHHHHH-CCCEEEECCHHHHHHHHHH--CCCCCCEEEEEECCC--CCCCCCCHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 99899999998-4998999989999999862--848995499997578--885789989999999999858998568998
Q ss_pred ECCCCCCCC-----HHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHCCCEEEECHHHCCCCCC
Q ss_conf 115433452-----05899999998875894722477734899998089889971132389999
Q gi|254780801|r 162 CIPPAMGNP-----KPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220 (222)
Q Consensus 162 ti~p~~~d~-----~~~F~~l~~l~~~~~~~~LSmGMS~D~~~Ai~~Gst~vRiGs~iFG~R~~ 220 (222)
|==+..+++ +.++..+.++.+.+... .|+.-|.-.-.--+.--+|||+|.++||-.|+
T Consensus 155 SHfa~AD~~~~~~t~~Q~~~F~~~~~~~~~~-~h~aNSa~~l~~~~~~~d~VR~Gi~lYG~~P~ 217 (354)
T cd06827 155 THFACADEPDSPGTAKQLAIFEQATAGLPGP-RSLANSAAILAWPEAHGDWVRPGIMLYGASPF 217 (354)
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHHCCCCCC-EEEECCHHHHCCCCCCCCEECCCEEEECCCCC
T ss_conf 4024578888789999999999997148866-66717887745952247723467461568877
No 16
>PRK03646 dadX alanine racemase; Reviewed
Probab=99.29 E-value=6.1e-11 Score=94.91 Aligned_cols=202 Identities=18% Similarity=0.149 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHCEEEEECC----CCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECC
Q ss_conf 999999999999998198964418998718----9999999999972981000121000111100000125873023024
Q gi|254780801|r 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGS 81 (222)
Q Consensus 6 nl~~i~~~I~~a~~~~gR~~~~v~LiaVtK----~~~~e~I~~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~ 81 (222)
+|+.++.+++...+. .+..+++||-| ++....|..++ .|.+.||--.++|+.+=...-.+. + ..=|-|.
T Consensus 9 dL~al~~N~~~lr~~----~~~~~i~aVVKAnAYGhG~~~va~~l-~g~~~faVa~~~Ea~~LR~~gi~~-p-Ilvl~g~ 81 (355)
T PRK03646 9 DLQALKQNLSIVREA----APGARVWSVVKANAYGHGIERIWSAL-GATDGFAVLNLEEAITLRERGWKG-P-ILMLEGF 81 (355)
T ss_pred EHHHHHHHHHHHHHH----CCCCEEEEEEEECCCCCCHHHHHHHH-HCCCEEEEEEHHHHHHHHHCCCCC-C-EEEECCC
T ss_conf 699999999999855----89986999995344648799999998-389979994699999999649999-7-7975388
Q ss_pred CCCCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHE
Q ss_conf 43200132011100001222220013443333331143036889700466563465700012223443104311001110
Q gi|254780801|r 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLM 161 (222)
Q Consensus 82 LQsNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLM 161 (222)
+...-+..++. .++.-+|.+...++.+.+ ...+++++|.|.|+|| .+|.||.++|+.++++.+...++|++.|+|
T Consensus 82 ~~~~~~~~~~~-~~l~~~i~s~~~l~~l~~--~~~~~~~~vhlkiDTG--M~RlG~~~~e~~~~~~~l~~~~~l~~~gi~ 156 (355)
T PRK03646 82 FHAQELELYDQ-HRLTTCVHSNWQLKALQN--ARLKAPLDIYLKVNSG--MNRLGFQPERVQTVWQQLRAMGNVGEMTLM 156 (355)
T ss_pred CCHHHHHHHHH-CCCEEEECCHHHHHHHHH--HCCCCCCEEEEEEECC--CCCCCCCHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 99899999998-198687581999999986--3517994699999079--877898857899999999848998758999
Q ss_pred ECCCCCCCC---HHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHCCCEEEECHHHCCCCCC
Q ss_conf 115433452---05899999998875894722477734899998089889971132389999
Q gi|254780801|r 162 CIPPAMGNP---KPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220 (222)
Q Consensus 162 ti~p~~~d~---~~~F~~l~~l~~~~~~~~LSmGMS~D~~~Ai~~Gst~vRiGs~iFG~R~~ 220 (222)
|==+..+++ ..++..+..+.+.+... .|+.-|.---.--+..-+|||+|.+++|--|.
T Consensus 157 SHfa~ad~~~~~~~Q~~~F~~~~~~l~~~-~~lanSa~~l~~p~~~~d~vR~Gi~lYG~~p~ 217 (355)
T PRK03646 157 SHFARADHPDGISEAMARIEQAAEGLECE-RSLSNSAATLWHPQAHSDWVRPGIILYGASPS 217 (355)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHCCCCC-EEEECCHHHHCCCCCCCCEEEEEEEEECCCCC
T ss_conf 86245788067999999999997267866-54528799978985679746323783568866
No 17
>COG0787 Alr Alanine racemase [Cell envelope biogenesis, outer membrane]
Probab=99.27 E-value=8.9e-11 Score=93.81 Aligned_cols=207 Identities=16% Similarity=0.207 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHCEEEEECCC----CCHHHHH-HHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEC
Q ss_conf 9999999999999981989644189987189----9999999-9997298100012100011110000012587302302
Q gi|254780801|r 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKM----VDSKKIR-VALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80 (222)
Q Consensus 6 nl~~i~~~I~~a~~~~gR~~~~v~LiaVtK~----~~~e~I~-~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG 80 (222)
++..++.+++...+.++ + .+++||-|- +....|. .++++|.+.||--.++|+.+=...... +...-.-+
T Consensus 10 dl~Al~~N~~~i~~~~~---~-~~~~AVVKAnAYGhG~~~va~~l~~~g~~~f~VA~l~EAi~LR~~gi~--~~~IlvL~ 83 (360)
T COG0787 10 DLGALRHNLRALRELAG---P-AKLMAVVKANAYGHGAVRVAKALLDAGADGFGVASLEEAIELREAGIT--GAPILVLE 83 (360)
T ss_pred EHHHHHHHHHHHHHHCC---C-CEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCC--CCCEEEEC
T ss_conf 68999999999997478---8-579999965436778999999999859998998629999999971888--99789973
Q ss_pred CCCCCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHH
Q ss_conf 44320013201110000122222001344333333114303688970046656346570001222344310431100111
Q gi|254780801|r 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160 (222)
Q Consensus 81 ~LQsNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GL 160 (222)
.+.....-..+...+..-+|.|...++.+.+.+.+. ++++|.|.|+++ .+|.||.|++...++..+...+++.+.|+
T Consensus 84 g~~~~~~~~~~~~~~l~~~v~s~~ql~~l~~~~~~~-~~l~vhLkiDTG--M~RlG~~~~~~~~~~~~~~~~~~~~~~gi 160 (360)
T COG0787 84 GFFPAEELELAAAYNLTPVVNSLEQLEALKNAALKN-KPLKVHLKIDTG--MNRLGLRPEEAVALAIDLIALKNLDLEGI 160 (360)
T ss_pred CCCCHHHHHHHHHCCCEEEECCHHHHHHHHHHHHCC-CCEEEEEEECCC--CCCCCCCHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 758835678999869738889999999999755106-962799997789--87579884899999998763248755999
Q ss_pred EECCCCCCCC-----HHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHCCCEEEECHHHCCCCCCC
Q ss_conf 0115433452-----058999999988758947224777348999980898899711323899999
Q gi|254780801|r 161 MCIPPAMGNP-----KPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221 (222)
Q Consensus 161 Mti~p~~~d~-----~~~F~~l~~l~~~~~~~~LSmGMS~D~~~Ai~~Gst~vRiGs~iFG~R~~~ 221 (222)
||==+..+++ ..++..++...+.++....++.-|.-.-.-=+.--+|||.|.++||-.|+.
T Consensus 161 ~SHfa~ADe~~~~~~~~Q~~~F~~~~~~~~~~~~h~aNSa~~~~~~~~~~d~vRpGi~lYG~~P~~ 226 (360)
T COG0787 161 FSHFACADEPEDPYTLKQLERFNLAKQGLPGELSHLANSAGLLLGPDYHFDMVRPGIALYGLSPSG 226 (360)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHCCCCCCCCEEECCEEEECCCCCC
T ss_conf 715677888898278999999999864698753788555877068642251464001322688565
No 18
>cd06820 PLPDE_III_LS_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Low Specificity D-Threonine Aldolase-like. This subfamily is composed of uncharacterized bacterial proteins with similarity to low specificity D-threonine aldolase (D-TA), which is a fold type III PLP-dependent enzyme that catalyzes the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Low specificity D-TAs show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that the monomeric form of low specificity D-TAs exh
Probab=99.24 E-value=5.1e-11 Score=95.47 Aligned_cols=204 Identities=20% Similarity=0.203 Sum_probs=143.1
Q ss_pred HHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHH-HHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEC--CCC
Q ss_conf 9999999999999819896441899871899999999-9997298100012100011110000012587302302--443
Q gi|254780801|r 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIR-VALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG--SLQ 83 (222)
Q Consensus 7 l~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~-~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG--~LQ 83 (222)
++.+..+|+.-...++ ...++|-+..||+..-+|. ...++|.+-|-=.-+.|++.=+. . .++.-+++ .+-
T Consensus 10 ~~~l~~Ni~~m~~~~~--~~gv~lrPH~KThk~~e~~~~ql~~Ga~g~~vatl~EAe~l~~----~-G~~dilla~p~v~ 82 (353)
T cd06820 10 LDRLERNIARMQAYAD--AHGLSLRPHIKTHKSPEIARLQLAAGAIGITVATVGEAEVMAD----A-GLSDIFIAYPIVG 82 (353)
T ss_pred HHHHHHHHHHHHHHHH--HCCCCEEEEEHHHCCHHHHHHHHHCCCCEEEEEEHHHHHHHHH----C-CCCCEEEECCCCC
T ss_conf 9999999999999898--7699477885131479999999867997499972999999997----6-9976688436689
Q ss_pred CCHHHHHCCC---CHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCC-CCHHHHHHHHHHCCCCCCHHH
Q ss_conf 2001320111---000012222200134433333311430368897004665634657-000122234431043110011
Q gi|254780801|r 84 SNKVSEIVSL---FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM-PNQTKDFVILCRQKYQLNVEG 159 (222)
Q Consensus 84 sNKvk~i~~~---~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~-p~el~~l~~~i~~~~~L~i~G 159 (222)
.+|++.+..+ ....-.||+...++.|++.+...+.++.|+|+|+++ ..|.|+. ++++.++++.+.+.|+|++.|
T Consensus 83 ~~~~~~l~~l~~~~~i~~~vD~~~~~~~l~~~~~~~~~~~~V~ieid~G--~~R~Gv~~~~~~~~l~~~i~~~~~l~l~G 160 (353)
T cd06820 83 RQKLERLRALAERVTLSVGVDSAEVARGLAEVAEGAGRPLEVLVEVDSG--MNRCGVQTPEDAVALARAIASAPGLRFRG 160 (353)
T ss_pred HHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCC--CCCCCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 8999999974304988999657999999999997679942899996888--88688898699999999998589976889
Q ss_pred HEECCCCCC---CCHHH----HHHHHHHHHH-----CCCCEECCCCCHHHHHHHH-HCCCEEEECHHHCCCCC
Q ss_conf 101154334---52058----9999999887-----5894722477734899998-08988997113238999
Q gi|254780801|r 160 LMCIPPAMG---NPKPH----FYLLSEIARE-----CKLTKLSMGMTRDFELAIA-SGATSVRIGSGIFGERP 219 (222)
Q Consensus 160 LMti~p~~~---d~~~~----F~~l~~l~~~-----~~~~~LSmGMS~D~~~Ai~-~Gst~vRiGs~iFG~R~ 219 (222)
||+-..... +.++. -..+...+.. +....+|.|=|..|..+.. .|-|.+|-|+.+|-.+.
T Consensus 161 v~~y~Gh~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~vs~GgT~t~~~~~~~~~~tEl~~G~yvf~D~~ 233 (353)
T cd06820 161 IFTYPGHSYAPGALEEAAADEAEALLAAAGILEEAGLEPPVVSGGSTPTLWRSHEVPGITEIRPGTYIFNDAS 233 (353)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCEEEHHCCCCCCEECCCEEEECCHH
T ss_conf 9954876678346999999999999999999884699988898569975460001676516614317951567
No 19
>cd06825 PLPDE_III_VanT Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, VanT and similar proteins. This subfamily is composed of Enterococcus gallinarum VanT and similar proteins. VanT is a membrane-bound serine racemase (EC 5.1.1.18) that is essential for vancomycin resistance in Enterococcus gallinarum. It converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. The C-terminal region of this protein contains a PLP-binding TIM-barrel domain followed by beta-sandwich domain, which is homologous to the fold type III PLP-dependent enzyme, bacterial alanine racemase (AR). AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. On the basis of this similarity, it has been suggested that dimer formation of VanT is required for its catalytic activity, and that it catalyzes the racemization of serine in a mechanistically similar manner to that of alanine by
Probab=99.24 E-value=1e-10 Score=93.36 Aligned_cols=194 Identities=16% Similarity=0.196 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHCEEEEECCC----CCHHHHHH-HHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEE
Q ss_conf 8999999999999999981989644189987189----99999999-997298100012100011110000012587302
Q gi|254780801|r 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKM----VDSKKIRV-ALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLR 77 (222)
Q Consensus 3 i~~nl~~i~~~I~~a~~~~gR~~~~v~LiaVtK~----~~~e~I~~-~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wH 77 (222)
|+.|++.+++.+ +...+++||-|- +....|.. +.++|++.||--.++|+.+=...-. +..--
T Consensus 11 l~~N~~~i~~~~----------~~~~~i~aVVKAnAYGhG~~~va~~l~~~Gv~~f~Va~~~EA~~LR~~g~---~~~Il 77 (368)
T cd06825 11 LEHNVKEIKRLL----------PSTCKLMAVVKANAYGHGDVEVARVLEQIGIDFFAVATIDEGIRLREAGI---KGEIL 77 (368)
T ss_pred HHHHHHHHHHHC----------CCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCC---CCCEE
T ss_conf 999999999747----------99987999995642668899999999986989999919999999996299---99989
Q ss_pred EECCCCCCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCH
Q ss_conf 30244320013201110000122222001344333333114303688970046656346570001222344310431100
Q gi|254780801|r 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNV 157 (222)
Q Consensus 78 fIG~LQsNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~i 157 (222)
..|......+..++. .++..+|.|...++.+++ ...+.+|.|+|+|| .+|.||.|+++..+.+ +..+++|++
T Consensus 78 vl~~~~~~~~~~~~~-~~l~~~i~s~~~~~~l~~----~~~~~~vhLkiDTG--M~RlG~~~~e~~~~~~-~~~~~~l~~ 149 (368)
T cd06825 78 ILGYTPPVRAKELKK-YSLTQTLISEAYAEELSK----YAVNIKVHLKVDTG--MHRLGESPEDIDSILA-IYRLKNLKV 149 (368)
T ss_pred EECCCCHHHHHHHHH-CCCEEEECCHHHHHHHHH----CCCCCEEEEEECCC--CCCCCCCHHHHHHHHH-HHHCCCCCE
T ss_conf 976998788999997-599899996999999972----79986079997079--9867888789999999-986799954
Q ss_pred HHHEEC-CCCCC--CC-----HHHHHHHHHHHHHC-----CCCEECCCCCHHHHHHHHHCCCEEEECHHHCCC
Q ss_conf 111011-54334--52-----05899999998875-----894722477734899998089889971132389
Q gi|254780801|r 158 EGLMCI-PPAMG--NP-----KPHFYLLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217 (222)
Q Consensus 158 ~GLMti-~p~~~--d~-----~~~F~~l~~l~~~~-----~~~~LSmGMS~D~~~Ai~~Gst~vRiGs~iFG~ 217 (222)
.|+||= +..++ ++ +.++..+.++.+.+ .....|+--|.-.-.-=+..-+|||.|.+|+|-
T Consensus 150 ~gi~SH~a~AD~~~~~~~~~t~~Q~~~F~~~~~~l~~~~~~~~~~h~aNSagil~~p~~~~d~vRpGi~LYG~ 222 (368)
T cd06825 150 SGIFSHLCVSDSLDEDDIAFTKHQIACFDQVLADLKARGIEVGKIHIQSSYGILNYPDLKYDYVRPGILLYGV 222 (368)
T ss_pred EEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHCCCCCCCCEECCCEEEECC
T ss_conf 7898530025668983358999999999999999987489845487427178763950248812673462678
No 20
>COG3457 Predicted amino acid racemase [Amino acid transport and metabolism]
Probab=99.23 E-value=1.4e-10 Score=92.57 Aligned_cols=204 Identities=21% Similarity=0.258 Sum_probs=143.2
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHCEEEEECCCC--CHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCC
Q ss_conf 99999999999999819896441899871899--9999999997298100012100011110000012587302302443
Q gi|254780801|r 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMV--DSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQ 83 (222)
Q Consensus 6 nl~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~--~~e~I~~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQ 83 (222)
|+++|.++.+.--..+.| ..+++.+|||-+ ...-.+.+...|+...+|.|..+++.=... ...+-.|+.--=-
T Consensus 9 dl~~ieeNak~~~~~a~~--~gI~~~~vtK~~~g~~~iae~l~~~Gi~~iaesr~~n~~~lr~~---g~~~~~~Llr~P~ 83 (353)
T COG3457 9 DLDKIEENAKVLQETAAR--YGIELYGVTKQFGGDPFIAEALLALGIEGIAESRIDNAIRLREA---GCTIPGHLLRSPC 83 (353)
T ss_pred EHHHHHHHHHHHHHHHHH--CCCEEEEEEEECCCCHHHHHHHHHCCCCEEEEHHHHHHHHHHHC---CCCCCCEEEECCC
T ss_conf 689988768999999987--39779998752058818999999658543430227889999975---9996754762652
Q ss_pred CCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCC---CHHHHHHHHHHCCCCCCHHHH
Q ss_conf 20013201110000122222001344333333114303688970046656346570---001222344310431100111
Q gi|254780801|r 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP---NQTKDFVILCRQKYQLNVEGL 160 (222)
Q Consensus 84 sNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p---~el~~l~~~i~~~~~L~i~GL 160 (222)
.--+..+++.+|++ ++.++..|+.++..|.+.+|..+|++-|..++ -+-|+.+ +++.+.++++..++++++.||
T Consensus 84 ~sei~~vv~~~Dvs-~~sel~~arqlse~A~~~Gk~h~VlLmVd~~D--lreG~~~~~~~~l~~~V~eI~~lkGi~~vGl 160 (353)
T COG3457 84 MSEIEDVVRKVDVS-TVSELDTARQLSEAAVRMGKVHDVLLMVDYGD--LREGQWGFLIEDLEETVEEIQQLKGIHLVGL 160 (353)
T ss_pred HHHHHHHHHHCCEE-EEECHHHHHHHHHHHHHHCCCEEEEEEEECCC--CCCCCHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 88999998735768-97258999999999998275216999998356--6674024478888999999966998359863
Q ss_pred ----EECCCCCCCCHHHHHHHHHHHHHC------CCCEECCCCCHHHHH---HHHHCCCEEEECHHHCCCC
Q ss_conf ----011543345205899999998875------894722477734899---9980898899711323899
Q gi|254780801|r 161 ----MCIPPAMGNPKPHFYLLSEIAREC------KLTKLSMGMTRDFEL---AIASGATSVRIGSGIFGER 218 (222)
Q Consensus 161 ----Mti~p~~~d~~~~F~~l~~l~~~~------~~~~LSmGMS~D~~~---Ai~~Gst~vRiGs~iFG~R 218 (222)
||.+..-..| +.+..+-..++++ ++..+|-|-|.-+.. -..-|-|+.|||-+|+|-+
T Consensus 161 gTnF~Cfg~v~PTp-~n~~~ll~~~~~lE~~~Gi~l~~vsagnats~~~L~~~~~~~inhlriG~al~~g~ 230 (353)
T COG3457 161 GTNFPCFGDVLPTP-ENLESLLQGKKKLEASSGIQLKQVSAGNATSLTLLPMGSLPGINHLRIGEALTGGV 230 (353)
T ss_pred ECCCCCCCCCCCCC-CCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHCCCCCCCCCCCCCCEEECCC
T ss_conf 11665456767884-04899999999987732950588127986203320145522555544452145361
No 21
>cd06821 PLPDE_III_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme D-Threonine Aldolase. D-threonine aldolase (D-TA, EC 4.3.1.18) reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. Its activity is present in several genera of bacteria but not in fungi. It requires PLP and a divalent cation such as Co2+, Ni2+, Mn2+, or Mg2+ as cofactors for catalytic activity and thermal stability. Members of this subfamily show similarity to bacterial alanine racemase (AR), a fold type III PLP-dependent enzyme which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that
Probab=99.14 E-value=4.6e-10 Score=89.02 Aligned_cols=205 Identities=18% Similarity=0.176 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHH-HHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCC
Q ss_conf 9999999999999819896441899871899999999-999729810001210001111000001258730230244320
Q gi|254780801|r 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIR-VALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85 (222)
Q Consensus 7 l~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~-~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQsN 85 (222)
++.+..+|+.-...++.. . +|-+-.||+..-+|. ...++|..-|==..+-|++--+.. ...||- +=-|+-.-
T Consensus 16 ~~~l~~Ni~~m~~~~~~~--~-~lRPH~KThKs~~ia~~Ql~~Ga~gi~vatl~EAe~~a~~--G~~dIl--ia~piv~~ 88 (361)
T cd06821 16 PDRIEENIRRMIRMAGDP--Q-RLRPHVKTHKMAEIVRLQLEAGITKFKCATIAEAEMLAEA--GAPDVL--LAYPLVGP 88 (361)
T ss_pred HHHHHHHHHHHHHHHCCC--C-CEEEEEECCCCHHHHHHHHHCCCCCEEECCHHHHHHHHHC--CCCCEE--EECCCCCH
T ss_conf 999999999999962316--8-7778964117999999999779983796279999999975--997589--97577656
Q ss_pred HHHHHCCCC------HHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCC-HHHHHHHHHHCCCCCCHH
Q ss_conf 013201110------0001222220013443333331143036889700466563465700-012223443104311001
Q gi|254780801|r 86 KVSEIVSLF------DVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN-QTKDFVILCRQKYQLNVE 158 (222)
Q Consensus 86 Kvk~i~~~~------~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~-el~~l~~~i~~~~~L~i~ 158 (222)
|+..++... ...=-|||...++.|++.+.+.+.+++|||+|+++ ..|+|+.|+ ++.++++.+.+.|+|++.
T Consensus 89 k~~rl~~l~~~~~~~~i~v~VDs~~~~~~l~~~~~~~~~~~~V~ievD~G--~~R~Gv~~~~~a~~La~~i~~~~~L~l~ 166 (361)
T cd06821 89 NIERFLELAKKYPGTRFSALVDDLEAAEALSAAAGSAGLTLSVLLDVNTG--MNRTGIAPGEDAEELYRAIATLPGLVLA 166 (361)
T ss_pred HHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHCCCCEEEEEEECCC--CCCCCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 69999998753889779999708999999999998669960699997678--8868888879999999999858998387
Q ss_pred HHEECCCCCC--CC-------HHHHHHHHHHHHHC-----CCCEECCCCCHHHHHHHHHCCCEEEECHHHCCCCCC
Q ss_conf 1101154334--52-------05899999998875-----894722477734899998089889971132389999
Q gi|254780801|r 159 GLMCIPPAMG--NP-------KPHFYLLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220 (222)
Q Consensus 159 GLMti~p~~~--d~-------~~~F~~l~~l~~~~-----~~~~LSmGMS~D~~~Ai~~Gst~vRiGs~iFG~R~~ 220 (222)
|+|+-....- +. ++....+..+++.+ ...++|.|=|.-|..+...+.+.||-|+.+|-...|
T Consensus 167 Gi~~y~Gh~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~vs~GgTpt~~~~~~~~~~Ev~pG~yvf~D~~~ 242 (361)
T cd06821 167 GLHAYDGHHRNTDLAEREAAADAAYKPVLALREALEAAGLPVPELVAGGTPSFPFHAAYTDVECSPGTFVLWDAGY 242 (361)
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCEEECCCEEEECCCHH
T ss_conf 8986536345678799999999999999999999997499975140579754030003774475376589825234
No 22
>TIGR00492 alr alanine racemase; InterPro: IPR000821 Alanine racemase catalyses the pyridoxal-dependent conversion of L-alanine into D-alanine, a key component of bacterial peptidoglycan . In Escherichia coli and Salmonella typhimurium, there are two alanine racemase isoforms, alr is a biosynthetic form required for cell wall formation; and dadB functions in L-alanine catabolism. By contrast with dadB and alr, both of which are monomeric enzymes, the alanine racemase of Bacillaceae are homodimers. In Pseudomonas putida, a broad-specificity amino acid racemase is structurally and functionally related to alanine racemase. The 3D-structure of the dimeric alanine racemase from Bacillus stearothermophilus has been determined to a resolution of 1.9 A . Each monomer comprises two domains, with an eight-stranded alpha/beta barrel at the N-terminus, and a C-terminal beta-strand domain. In the dimer, the mouth of the alpha/beta barrel of one monomer faces the second domain of the other monomer. The pyridoxal 5'-phosphate (PLP) cofactor lies in and above the barrel mouth and is covalently linked via an aldimine linkage to Lys39. Several other residues are involved in anchoring the PLP, for example, Arg219 forms a hydrogen bond with the pyridine nitrogen of the cofactor, which is assumed to influence electron delocalisation in PLP-alanine intermediates; Arg136 donates a hydrogen bond to the phenolic oxygen of PLP, and may be involved in substrate binding and stabilisation of intermediates; and Tyr265' is postulated to be a 2 proton donor to the carbanion intermediate .; GO: 0008784 alanine racemase activity, 0006522 alanine metabolic process.
Probab=99.13 E-value=8.7e-10 Score=87.15 Aligned_cols=204 Identities=22% Similarity=0.293 Sum_probs=151.5
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCHHHCEEEEECCC----CCHHHHH-HHHHCCCCCCCCCCCHHHHHHHHCCCCC-CCCC
Q ss_conf 98999999999999999981989644189987189----9999999-9997298100012100011110000012-5873
Q gi|254780801|r 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKM----VDSKKIR-VALSCGQVIFAENKLQEAKKKWIPLRKE-WDVQ 75 (222)
Q Consensus 2 ~i~~nl~~i~~~I~~a~~~~gR~~~~v~LiaVtK~----~~~e~I~-~~~~~G~~~fGENrvQE~~~K~~~l~~~-~~i~ 75 (222)
+|++||..||+.| ++..+|+||-|- |....|. .+.+.|...||=-++.|+.+ |++. ....
T Consensus 12 ALk~Nl~~~k~~~----------~~~~~~~AVVKANAYGHG~~~~a~~~~~~Gad~lavA~LeEAi~----LR~~G~~~P 77 (383)
T TIGR00492 12 ALKHNLSAIKKQI----------GPKSKIMAVVKANAYGHGLIEVAKTLLQAGADYLAVATLEEAIE----LRKAGITAP 77 (383)
T ss_pred HHHHHHHHHHHHC----------CCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHH----HHHCCCCCC
T ss_conf 8999999999746----------88756999981484260189999999865896640002467799----885478875
Q ss_pred EEEECCCCCCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHC--CCEEEEEEEECCCCCCCCCCCCC-HHHHHHHHHHCC
Q ss_conf 023024432001320111000012222200134433333311--43036889700466563465700-012223443104
Q gi|254780801|r 76 LRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS--RFLPVYIQVNTGYEIQKSGIMPN-QTKDFVILCRQK 152 (222)
Q Consensus 76 wHfIG~LQsNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~--~~~~vliQVN~~~e~~K~G~~p~-el~~l~~~i~~~ 152 (222)
-=+.|-..+++-=.++-.+++--+|.|.+-++.+++.+.+.. ++++|+|-|+|| .+|-|+.|+ +...++..+.++
T Consensus 78 IL~Lg~~~~~~~~~~~~~~~l~~~v~s~Eql~~~~~~~lk~~sa~~l~vhlK~DTG--M~RLG~~~~f~~~~~~~~~~~~ 155 (383)
T TIGR00492 78 ILLLGGFFSAEDLKILAAWDLTTTVHSVEQLKALEEALLKEPSAKRLKVHLKIDTG--MNRLGVKPDFEEALFVQKLRAL 155 (383)
T ss_pred EEEEECCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHCCCCCEEEEEEEECCC--CCCCCCCCCHHHHHHHHHHHHC
T ss_conf 78850479988999998618638980889999999984104478747899862388--8647888657899999999836
Q ss_pred CCCC-HHHHEECCCCCCCC-----HHHHHHHHHHHHHCC------CCEECCCCCHHHHHHHHHC----CCEEEECHHHCC
Q ss_conf 3110-01110115433452-----058999999988758------9472247773489999808----988997113238
Q gi|254780801|r 153 YQLN-VEGLMCIPPAMGNP-----KPHFYLLSEIARECK------LTKLSMGMTRDFELAIASG----ATSVRIGSGIFG 216 (222)
Q Consensus 153 ~~L~-i~GLMti~p~~~d~-----~~~F~~l~~l~~~~~------~~~LSmGMS~D~~~Ai~~G----st~vRiGs~iFG 216 (222)
+++. +.|+||==|.-|+| ..+++++..+.+.++ ...+||--|+=--.==+.- -+|||.|=.|+|
T Consensus 156 ~~~~~~~gi~sHfa~AD~~~~~~~~~Q~~~F~~~~~~L~~~~i~~~~~~h~aNSaaiL~~~~~~enr~fd~vRpGIiLYG 235 (383)
T TIGR00492 156 SKLLELEGIFSHFATADEPKTTTTKKQIERFLSFLEGLKQQKIELIPFRHIANSAAILSLPEGHENRLFDMVRPGIILYG 235 (383)
T ss_pred CCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHC
T ss_conf 45643021121456767722147999999999998513436864763354210178644533566640114421435321
Q ss_pred CCCCC
Q ss_conf 99999
Q gi|254780801|r 217 ERPCQ 221 (222)
Q Consensus 217 ~R~~~ 221 (222)
-+|..
T Consensus 236 ~~Ps~ 240 (383)
T TIGR00492 236 LYPSA 240 (383)
T ss_pred CCCCH
T ss_conf 47620
No 23
>cd06819 PLPDE_III_LS_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Low Specificity D-Threonine Aldolase. Low specificity D-threonine aldolase (Low specificity D-TA, EC 4.3.1.18), encoded by dtaAS gene from Arthrobacter sp. strain DK-38, is the prototype of this subfamily. Low specificity D-TAs are fold type III PLP-dependent enzymes that catalyze the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Members of this subfamily show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that t
Probab=99.09 E-value=4.1e-10 Score=89.35 Aligned_cols=205 Identities=19% Similarity=0.210 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCH-HHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEC-CC-C
Q ss_conf 999999999999981989644189987189999-99999997298100012100011110000012587302302-44-3
Q gi|254780801|r 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDS-KKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG-SL-Q 83 (222)
Q Consensus 7 l~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~-e~I~~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG-~L-Q 83 (222)
++.+..+|+.-...+. ...++|-+..||+.. +-.+...++|.+-|-=..+.|++-=+.. .++.=+++ ++ .
T Consensus 14 ~~~l~~Ni~~m~~~~~--~~gv~lrPH~KThks~~i~~~ql~~Ga~gi~~atl~EAe~~~~~-----G~~dIlla~p~v~ 86 (358)
T cd06819 14 LDALERNIKRMAAFAK--AHGVRLRPHAKTHKCPAIARRQIAAGAVGVCCQKLSEAEVMAAA-----GIRDILITNEVVG 86 (358)
T ss_pred HHHHHHHHHHHHHHHH--HCCCCEEEEEHHHCCHHHHHHHHHCCCCEEEECCHHHHHHHHHC-----CCCEEEEECCCCC
T ss_conf 9999999999999998--67996777731207899999999669974996579999999977-----9970688546689
Q ss_pred CCHHHHHCCCC---HHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCC-CHHHHHHHHHHCCCCCCHHH
Q ss_conf 20013201110---000122222001344333333114303688970046656346570-00122234431043110011
Q gi|254780801|r 84 SNKVSEIVSLF---DVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP-NQTKDFVILCRQKYQLNVEG 159 (222)
Q Consensus 84 sNKvk~i~~~~---~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p-~el~~l~~~i~~~~~L~i~G 159 (222)
.+|++.+.... ...=.||+...++.|++.+...+.+++|||+|+++ ..|+|+.| +++.+++..+.+.|+|++.|
T Consensus 87 ~~~l~rl~~l~~~~~~~~~vDs~~~~~~l~~~a~~~~~~~~V~Ievd~G--~~R~Gv~~~~~~~~la~~I~~~~~l~l~G 164 (358)
T cd06819 87 PAKIARLAALARRAPLIVCVDHPDNVRALAAAAVEAGVRLDVLVEIDVG--QGRCGVPPGEAALALARTIAALPGLRFAG 164 (358)
T ss_pred HHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHCCCCEEEEEEECCC--CCCCCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 7899999999854998999949999999999998659963699997889--98778888699999999998489980620
Q ss_pred HEECCCCC---CCC-------HHHHHHHHHHHHHC-----CCCEECCCCCHHHHHHHH-HCCCEEEECHHHCCCCCC
Q ss_conf 10115433---452-------05899999998875-----894722477734899998-089889971132389999
Q gi|254780801|r 160 LMCIPPAM---GNP-------KPHFYLLSEIAREC-----KLTKLSMGMTRDFELAIA-SGATSVRIGSGIFGERPC 220 (222)
Q Consensus 160 LMti~p~~---~d~-------~~~F~~l~~l~~~~-----~~~~LSmGMS~D~~~Ai~-~Gst~vRiGs~iFG~R~~ 220 (222)
+|+-.... .++ +.....+....+.+ ....+|.|=|+-|..... .|-|.+|-|+.+|-...|
T Consensus 165 i~~y~Gh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ivs~GgT~t~~~~~~~~~~tEl~~G~yvf~D~~y 241 (358)
T cd06819 165 LQAYHGHLQHIRDYEERRAAIAEAAEALQATRDALEAAGLPCEIVTGGGTGTYEFEAASGVYTELQAGSYVFMDADY 241 (358)
T ss_pred CCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEEECCCCCEEEECCCEEEEECHHH
T ss_conf 10465333027998999999999999999999999966999855744788750222256733797784299616788
No 24
>cd07376 PLPDE_III_DSD_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase. This family includes eukaryotic D-serine dehydratases (DSD), cryptic DSDs from bacteria, D-threonine aldolases (D-TA), low specificity D-TAs, and similar uncharacterized proteins. DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. Members of this family are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity to AR, it is poss
Probab=99.05 E-value=2.6e-09 Score=83.99 Aligned_cols=203 Identities=18% Similarity=0.218 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHH-HHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECC
Q ss_conf 8999999999999999981989644189987189999999-999972981000121000111100000125873023024
Q gi|254780801|r 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKI-RVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGS 81 (222)
Q Consensus 3 i~~nl~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I-~~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~ 81 (222)
+..|++..++..+ ...++|=+-.||+-.-+| +...+.|.+-|-=..+.|++-=+..- -.||-.-+ +
T Consensus 2 le~Ni~~m~~~~~---------~~g~~lRPH~KThK~~~i~~~ql~~Ga~gi~~atl~EAe~~~~~G--~~dIl~a~--p 68 (345)
T cd07376 2 LEANISRMAARAR---------ASGVRLRPHVKTHKSPELAQRQLAAGARGVTVATLAEAETFAEAG--VKDILMAY--P 68 (345)
T ss_pred HHHHHHHHHHHHH---------HCCCCEEEEECHHCCHHHHHHHHHCCCCEEEEECHHHHHHHHHCC--CCCEEEEC--C
T ss_conf 7899999999999---------769976677500048999999986799709994699999999769--98389966--8
Q ss_pred C-CCCHHHHHCCC----CHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHH--HHHHHHHHCCCC
Q ss_conf 4-32001320111----0000122222001344333333114303688970046656346570001--222344310431
Q gi|254780801|r 82 L-QSNKVSEIVSL----FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT--KDFVILCRQKYQ 154 (222)
Q Consensus 82 L-QsNKvk~i~~~----~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el--~~l~~~i~~~~~ 154 (222)
+ ...|++.+... ....=.|||...++.|++.+.+.+.+++|||+|+++ ..|.|+.|++. ..++..+.+.|+
T Consensus 69 i~~~~~l~rl~~l~~~~~~i~~~VDs~~~~~~l~~~a~~~~~~~~V~ievD~G--~~R~Gv~~~~~~~l~l~~~i~~~~~ 146 (345)
T cd07376 69 LVGPAAIARLAGLLRQEAEFHVLVDSPEALAALAAFAAAHGVRLRVMLEVDVG--GHRSGVRPEEAAALALADAVQASPG 146 (345)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEEECCC--CCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 89989999999986349838999708999999999998659827899997889--9858888877999999999853999
Q ss_pred CCHHHHEECCCCC---CCC--H-----HHHHHHHHHH----HHCCCCEECCCCCHHHHHHHHH-CCCEEEECHHHCCCCC
Q ss_conf 1001110115433---452--0-----5899999998----8758947224777348999980-8988997113238999
Q gi|254780801|r 155 LNVEGLMCIPPAM---GNP--K-----PHFYLLSEIA----RECKLTKLSMGMTRDFELAIAS-GATSVRIGSGIFGERP 219 (222)
Q Consensus 155 L~i~GLMti~p~~---~d~--~-----~~F~~l~~l~----~~~~~~~LSmGMS~D~~~Ai~~-Gst~vRiGs~iFG~R~ 219 (222)
|++.|||+-+... .++ + +....+++.. ..+....+|.|=|.-|..+.+. |-|.||-|+.+|....
T Consensus 147 l~l~G~~~y~Gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vs~GgTpt~~~~~~~~~~tEl~~G~yvf~D~~ 226 (345)
T cd07376 147 LRLAGVMAYEGHIYGAGGAREGAQARDQAVAAVRAAAAAAERGLACPTVSGGGTPTYQLTAGDRAVTELRAGSYVFMDTG 226 (345)
T ss_pred EEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCCEEECCCEEEECCHH
T ss_conf 18989997471206999989999999999999999999986499988895578887410336887328746348964213
Q ss_pred C
Q ss_conf 9
Q gi|254780801|r 220 C 220 (222)
Q Consensus 220 ~ 220 (222)
|
T Consensus 227 ~ 227 (345)
T cd07376 227 F 227 (345)
T ss_pred H
T ss_conf 2
No 25
>cd06818 PLPDE_III_cryptic_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bacterial Cryptic D-Serine Dehydratase. This subfamily is composed of Burkholderia cepacia cryptic D-serine dehydratase (cryptic DSD), which is also called D-serine deaminase, and similar bacterial proteins. Members of this subfamily are fold type III PLP-dependent enzymes with similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as dimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity, it is possible cryptic DSDs may also form dimers. Cryptic DSDs are distinct from the ubiquitous bacterial DSDs coded by the dsdA gene, mammalian L-serine dehydratases (LSD) and mammalian serine racemase (SerRac), which are fold type II PLP-dependent enzymes. At present, the enzymatic and biochemical properties
Probab=98.88 E-value=2.8e-08 Score=77.06 Aligned_cols=202 Identities=13% Similarity=0.125 Sum_probs=135.4
Q ss_pred HHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHH-HHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEC--CCC
Q ss_conf 9999999999999819896441899871899999999-9997298100012100011110000012587302302--443
Q gi|254780801|r 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIR-VALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG--SLQ 83 (222)
Q Consensus 7 l~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~-~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG--~LQ 83 (222)
++.+..+|+.-...+.+ ..++|-+=.||+-.-+|. ...++|..-|==..+.|++-=+.. .++.=+|- .+.
T Consensus 10 ~~~le~Ni~~M~~~~~~--~gv~lRPH~KTHKs~eia~~Q~~~Ga~git~at~~EAe~~~~~-----G~~dilia~~iv~ 82 (382)
T cd06818 10 ASALAHNLAWMQAFAAA--HGVKLAPHGKTTMAPQLFRRQLEAGAWGITVATVAQARVALAF-----GVRRVLLANQLVG 82 (382)
T ss_pred HHHHHHHHHHHHHHHHH--CCCCEEEECCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHC-----CCCCEEEECCCCC
T ss_conf 99999999999999986--6983520401004799999999689983896779999999976-----9864799426579
Q ss_pred CCHHHHHCCCCH------HCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCC-CCHHHHHHHHHHCCCCCC
Q ss_conf 200132011100------0012222200134433333311430368897004665634657-000122234431043110
Q gi|254780801|r 84 SNKVSEIVSLFD------VIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM-PNQTKDFVILCRQKYQLN 156 (222)
Q Consensus 84 sNKvk~i~~~~~------~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~-p~el~~l~~~i~~~~~L~ 156 (222)
..|++.+..+.. ..--|||...++.|++.+...+.+++|||+||++ ..|.|+. ++++.+++..+...|+|+
T Consensus 83 ~~~~~rl~~l~~~~~~~~i~~~vD~~~~~~~l~~~~~~~~~~~~V~ievd~G--~~R~Gv~~~~~a~~l~~~i~~~~~L~ 160 (382)
T cd06818 83 KANLRRLAALLAADPDFEFFCLVDSVDNVRALAAFFAALERPLNVLIELGVP--GGRTGVRTEAEALALADAIAASPALR 160 (382)
T ss_pred HHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCC--CCCCCCCCHHHHHHHHHHHHHCCCCE
T ss_conf 8899999999850899789999629999999999998559945899997889--88789998699999999997299965
Q ss_pred HHHHEECCCC-----CCCC----HHHHHHHHHHHHHC---C-----CCEECCCCCHHHHHHHHH--C-------CCEEEE
Q ss_conf 0111011543-----3452----05899999998875---8-----947224777348999980--8-------988997
Q gi|254780801|r 157 VEGLMCIPPA-----MGNP----KPHFYLLSEIAREC---K-----LTKLSMGMTRDFELAIAS--G-------ATSVRI 210 (222)
Q Consensus 157 i~GLMti~p~-----~~d~----~~~F~~l~~l~~~~---~-----~~~LSmGMS~D~~~Ai~~--G-------st~vRi 210 (222)
+.|||+-+-. ..+. +..+....++...+ . ...+|.|=|.-|..+.+. + -+.+|-
T Consensus 161 ~~Gl~~y~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivs~GgT~~f~~~~~~~~~~~~~~~~~~elrp 240 (382)
T cd06818 161 LAGVEGYEGVAAHDDSEETLAAVRAFLARAVDLARRLAERGLFPDRELILTAGGSAWFDLVAEALAALALDGPVTLVLRS 240 (382)
T ss_pred EEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCEEEECC
T ss_conf 94688546756678866899999999999999999999706788897089982895543334554144568773279867
Q ss_pred CHHHCCC
Q ss_conf 1132389
Q gi|254780801|r 211 GSGIFGE 217 (222)
Q Consensus 211 Gs~iFG~ 217 (222)
|+.+|-.
T Consensus 241 G~Yvf~D 247 (382)
T cd06818 241 GCYVTHD 247 (382)
T ss_pred EEEEECC
T ss_conf 1699745
No 26
>cd06813 PLPDE_III_DSD_D-TA_like_2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 2. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=98.78 E-value=1e-07 Score=73.30 Aligned_cols=205 Identities=20% Similarity=0.202 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHH-HHHHHC-CCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECC--C
Q ss_conf 999999999999981989644189987189999999-999972-981000121000111100000125873023024--4
Q gi|254780801|r 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKI-RVALSC-GQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGS--L 82 (222)
Q Consensus 7 l~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I-~~~~~~-G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~--L 82 (222)
++.+..||+.-..+++ ...+=.++|++..-.+ +..... |..-+==-.+-|++- +... .+.=-+||. .
T Consensus 18 ld~l~~Ni~~m~~~a~----g~~iR~~~Ks~k~~~l~~~~l~~~g~~Gi~~~~~~EA~~----la~~-G~~DILl~~p~v 88 (388)
T cd06813 18 LDALDANAADLVRRAG----GKPIRVASKSVRCRALLRRVLAAPGFQGVMAFTLAEALW----LARQ-GFDDILVAYPSV 88 (388)
T ss_pred HHHHHHHHHHHHHHHC----CCCCEEECCCCCCHHHHHHHHHHCCCCEEEEECHHHHHH----HHHC-CCCCEEECCCCC
T ss_conf 9999999999999737----998166504047999999998605987068655999999----9866-998189778888
Q ss_pred CCCHHHHHCCCCH---HC-CCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCC-------CCCCCC-CCCHHHHHHHHHH
Q ss_conf 3200132011100---00-1222220013443333331143036889700466-------563465-7000122234431
Q gi|254780801|r 83 QSNKVSEIVSLFD---VI-ETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE-------IQKSGI-MPNQTKDFVILCR 150 (222)
Q Consensus 83 QsNKvk~i~~~~~---~I-hsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e-------~~K~G~-~p~el~~l~~~i~ 150 (222)
-..|+..++.... .| --||+...++.++..+...+..++|+|+|+++-- ..++|+ +++++.+++..|.
T Consensus 89 ~~~~l~~l~~~~~~~~~i~~~VD~~~~l~~l~~aa~~~g~~l~V~ieiD~g~~r~G~~~G~~RsgV~~~~~a~~La~~I~ 168 (388)
T cd06813 89 DRAALRELAADPKLGATITLMVDSVEHLDLLDAVAAPMRVEVRVCIDIDASLRFGGLHFGVRRSPLHTPAQALALAKAIA 168 (388)
T ss_pred CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99999999854423771799972888999999999865995699999717876667414767688899899999999986
Q ss_pred CCCCCCHHHHEECCCC----CC-CC----H---------HHHHHHHH----HHH---H--CCCCEECCCCCHHHHHHHHH
Q ss_conf 0431100111011543----34-52----0---------58999999----988---7--58947224777348999980
Q gi|254780801|r 151 QKYQLNVEGLMCIPPA----MG-NP----K---------PHFYLLSE----IAR---E--CKLTKLSMGMTRDFELAIAS 203 (222)
Q Consensus 151 ~~~~L~i~GLMti~p~----~~-d~----~---------~~F~~l~~----l~~---~--~~~~~LSmGMS~D~~~Ai~~ 203 (222)
..|+|++.|||+--+. .+ .+ + .++..+.+ ..+ . +.+...|.|=|+.|+.--..
T Consensus 169 ~~p~L~~~Glm~Yeghia~~~d~~~~~~~~~~~~~~~~~~s~~e~~~r~~~~v~al~~~g~~~~~VngGGTgt~~~~~~~ 248 (388)
T cd06813 169 ARPGLRLVGLMGYEAQIAGVGDSVPGKRVKSAVIRLLKKRSIKELAERRAAVVAALRAEGEDLEFVNGGGTGSLESTAAD 248 (388)
T ss_pred HCCCCEEEEEECCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEECCCCC
T ss_conf 19997488897200655678765521245689999999999999999999999999961999758924897664123568
Q ss_pred CC-CEEEECHHHCCCCCC
Q ss_conf 89-889971132389999
Q gi|254780801|r 204 GA-TSVRIGSGIFGERPC 220 (222)
Q Consensus 204 Gs-t~vRiGs~iFG~R~~ 220 (222)
+. |.|+.||.+|.+..|
T Consensus 249 ~~~tEv~aGS~l~~p~~f 266 (388)
T cd06813 249 AVVTEVTAGSGLYAPALF 266 (388)
T ss_pred CCCEEECCCCEEECCHHC
T ss_conf 852165554579841120
No 27
>cd06812 PLPDE_III_DSD_D-TA_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=98.78 E-value=7.1e-08 Score=74.31 Aligned_cols=205 Identities=16% Similarity=0.134 Sum_probs=135.4
Q ss_pred HHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHH-HHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEC-CCCC
Q ss_conf 9999999999999819896441899871899999999-9997298100012100011110000012587302302-4432
Q gi|254780801|r 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIR-VALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG-SLQS 84 (222)
Q Consensus 7 l~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~-~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG-~LQs 84 (222)
++.+..+|+.-...+. ...++|-+-.||+-.-+|. .-.++|..-|==..+.|++--+.. .+..=+|+ ++-.
T Consensus 13 ~~~l~~Ni~~M~~~~~--~~g~~lRPH~KTHKs~eia~~Q~~~Ga~gi~~atv~EAe~~a~~-----G~~dIl~a~~i~~ 85 (374)
T cd06812 13 EARMDRNIARLRQRLS--RLGVRLRPHLKTAKSLEVARRLLAAGASPATVSTLKEAEAFAEA-----GYRDILYAVGIAP 85 (374)
T ss_pred HHHHHHHHHHHHHHHH--HCCCCEEEEECHHCCHHHHHHHHHCCCCCEEECCHHHHHHHHHC-----CCCEEEEECCCCH
T ss_conf 9999999999999998--76996602610014799999999679984897889999999977-----9873999357787
Q ss_pred CHHHHHCCC----CHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCH-HHHHHHHHHCCCCCCHHH
Q ss_conf 001320111----000012222200134433333311430368897004665634657000-122234431043110011
Q gi|254780801|r 85 NKVSEIVSL----FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ-TKDFVILCRQKYQLNVEG 159 (222)
Q Consensus 85 NKvk~i~~~----~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~e-l~~l~~~i~~~~~L~i~G 159 (222)
.|+..++.. .+..=.||+...++.|+..+...+.+++|||+||++ .+|.|+.|++ ...++..+...++|++.|
T Consensus 86 ~kl~rl~~l~~~~~~~~v~VD~~~~~~~l~~~~~~~g~~~~V~Ievd~G--~~RtGv~~~~~al~~~~~~~~~~~l~~~G 163 (374)
T cd06812 86 AKLPRVLALRRQGVNLTILLDSVEQAQAVAAFSRQHGVRFPVLIEIDCD--GHRGGIAPDSDALLEIARILHDGGAELRG 163 (374)
T ss_pred HHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCC--CCCCCCCCCHHHHHHHHHHHHCCCCCEEE
T ss_conf 8999999997369948999557999999999999759944699997689--98678897069999999997479974546
Q ss_pred HEECCCCC---CCC--H-----HHHHHHHHHHHHC-----CCCEECCCCCHHHHHHHH-HCCCEEEECHHHCCCCCC
Q ss_conf 10115433---452--0-----5899999998875-----894722477734899998-089889971132389999
Q gi|254780801|r 160 LMCIPPAM---GNP--K-----PHFYLLSEIAREC-----KLTKLSMGMTRDFELAIA-SGATSVRIGSGIFGERPC 220 (222)
Q Consensus 160 LMti~p~~---~d~--~-----~~F~~l~~l~~~~-----~~~~LSmGMS~D~~~Ai~-~Gst~vRiGs~iFG~R~~ 220 (222)
||+-+-.. .++ + ..+..+..+++.+ .....|.|=|.-|..+-. .|-|.+|-|+.+|-.+.|
T Consensus 164 ~~~y~Gh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~vs~GgTpt~~~~~~~~gvtE~~pG~Yvf~D~~~ 240 (374)
T cd06812 164 VLTHAGESYACRTPEALAAAAEQERAAAVRAAERLRAAGLPCPVVSVGSTPTAHFAEDLTGVTEVRAGVYVFFDLVM 240 (374)
T ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEECCCCCCCCCCCCEEEECCHHH
T ss_conf 76238743478999999999999999999999999865999887852688740011036775201572158504777
No 28
>cd06814 PLPDE_III_DSD_D-TA_like_3 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 3. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=98.71 E-value=7.6e-08 Score=74.08 Aligned_cols=206 Identities=13% Similarity=0.128 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHH-HHHHH-CCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCC--
Q ss_conf 999999999999981989644189987189999999-99997-29810001210001111000001258730230244--
Q gi|254780801|r 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKI-RVALS-CGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSL-- 82 (222)
Q Consensus 7 l~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I-~~~~~-~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~L-- 82 (222)
++.+..||+.-..+.+ ..+.|=+++|++..-.| +.... .|..-|.-=..-|+..-...+.. .| .++|.=
T Consensus 16 ldal~~Ni~~m~~~~~---~~~~lRph~Ks~ks~~ll~~~~~~~g~~g~~~~~~~e~~~~~~~~~~-~D---iLl~~p~~ 88 (379)
T cd06814 16 KDRLDHNIDLLREHLA---GSLAYRIVAKSLPSPPLLRHIMKRAGTRRLMVFHQPFLNAVAKAFPD-AD---ILLGKPMP 88 (379)
T ss_pred HHHHHHHHHHHHHHHC---CCCCCCCEECCCCCHHHHHHHHHHCCCCEEEEECHHHHHHHHHHCCC-CC---EEECCCCC
T ss_conf 8999999999999756---89973535040579999999987459875788219999999974766-64---89648774
Q ss_pred CCCHHHHHCC-------C-CHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCC-CHHHHHHHHHHCCC
Q ss_conf 3200132011-------1-0000122222001344333333114303688970046656346570-00122234431043
Q gi|254780801|r 83 QSNKVSEIVS-------L-FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP-NQTKDFVILCRQKY 153 (222)
Q Consensus 83 QsNKvk~i~~-------~-~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p-~el~~l~~~i~~~~ 153 (222)
...+.+.... . ....=-||+...+..++..+.+.+..++|+|+||++ -.++|+.+ +++.+++..+...|
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~i~~~VD~~~~l~~l~~~a~~~g~~l~V~ieiDvG--~~R~Gv~~~~~a~~la~~I~~~~ 166 (379)
T cd06814 89 VAAAARFYRQLTGSAFRPARQLQWLIDTPERLAQYRALARSLGLTLRINLELDVG--LHRGGFADPQTLPKALTAIDAPP 166 (379)
T ss_pred CHHHHHHHHHHHHCCCCCCCCEEEEEECHHHHHHHHHHHHHCCCCEEEEEEECCC--CCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 0789999987331002665617999838999999999998759816899996788--87388789799999999997389
Q ss_pred CCCHHHHEECCCCC----C--CCH----HHHHH---HHHHHHH-----CCCCEECCCCCHHHHHHHH-HCCCEEEECHHH
Q ss_conf 11001110115433----4--520----58999---9999887-----5894722477734899998-089889971132
Q gi|254780801|r 154 QLNVEGLMCIPPAM----G--NPK----PHFYL---LSEIARE-----CKLTKLSMGMTRDFELAIA-SGATSVRIGSGI 214 (222)
Q Consensus 154 ~L~i~GLMti~p~~----~--d~~----~~F~~---l~~l~~~-----~~~~~LSmGMS~D~~~Ai~-~Gst~vRiGs~i 214 (222)
+|++.|||+--+.- + +.+ ..... ..+.... +....+|.|=|+-|+.--. .+-|.|..||.+
T Consensus 167 ~l~l~Glm~Yeghi~~~~~~~~r~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~vngGGTgT~~~~~~~~~~tEv~aGS~~ 246 (379)
T cd06814 167 RLRFSGLMGYEPHVAKLPGLISPAKARAAAMARYQAFVALARAHLGAHTQKLTLNTGGSPTYRLYEGDGPVNEVSAGSAL 246 (379)
T ss_pred CCEEEEEEEEHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCEEECCCCCCEEECCCCCE
T ss_conf 97798985164656559870318999999999999999999875403676656942687430011479973288777357
Q ss_pred CCCCCCC
Q ss_conf 3899999
Q gi|254780801|r 215 FGERPCQ 221 (222)
Q Consensus 215 FG~R~~~ 221 (222)
|.+..|-
T Consensus 247 f~p~dfd 253 (379)
T cd06814 247 VKPTDFD 253 (379)
T ss_pred ECCCCCC
T ss_conf 2401014
No 29
>cd06843 PLPDE_III_PvsE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme PvsE. This subfamily is composed of PvsE from Vibrio parahaemolyticus and similar proteins. PvsE is a vibrioferrin biosynthesis protein which is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. It has been suggested that PvsE may be involved in the biosynthesis of the polycarboxylate siderophore vibrioferrin. It may catalyze the decarboxylation of serine to yield ethanolamine. PvsE may require homodimer formation and the presence of the PLP cofactor for activity.
Probab=98.61 E-value=1.1e-06 Score=66.31 Aligned_cols=178 Identities=17% Similarity=0.089 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCC-
Q ss_conf 9999999999999819896441899871899999999999729810001210001111000001258730230244320-
Q gi|254780801|r 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN- 85 (222)
Q Consensus 7 l~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQsN- 85 (222)
++.|+++++.....- |..+++.=..|.-|...|...+......|-=.-..|+.. ..... ++-+-+|-|+.-+.
T Consensus 9 ~~~l~~~~~~l~~a~---p~~~~~~YAvKaN~~~~il~~l~~~G~g~DvaS~~El~~-~~~~~--~~~~Iif~gp~K~~~ 82 (377)
T cd06843 9 LAALRAHARALRASL---PPGCELFYAIKANSDPPILRALAPHVDGFEVASGGEIAH-VRAAV--PDAPLIFGGPGKTDS 82 (377)
T ss_pred HHHHHHHHHHHHHHC---CCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHH-HHHCC--CCCCEEECCCCCCHH
T ss_conf 999999999999857---999849999603889999999997699689829999999-98539--996479889999999
Q ss_pred HHHHHCCCC-HHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECC------------CCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 013201110-00012222200134433333311430368897004------------66563465700012223443104
Q gi|254780801|r 86 KVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG------------YEIQKSGIMPNQTKDFVILCRQK 152 (222)
Q Consensus 86 Kvk~i~~~~-~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~------------~e~~K~G~~p~el~~l~~~i~~~ 152 (222)
-+++++..= .+| ++||+...++|.+.+.+.++..+|+|.||.+ +.++|+|+.++++.++++.++++
T Consensus 83 ~l~~a~~~gv~~i-~~DS~~El~~i~~~~~~~~~~~~v~lRinp~~~~~~~~~~~~~~~~sKFGi~~~~~~~~l~~~~~~ 161 (377)
T cd06843 83 ELAQALAQGVERI-HVESELELRRLNAVARRAGRTAPVLLRVNLALPDLPSSTLTMGGQPTPFGIDEADLPDALELLRDL 161 (377)
T ss_pred HHHHHHHCCCCEE-EECCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 9999998799889-988999999999878861996289999967877777554205888877898989999999999828
Q ss_pred CCCCHHHHEE-CCCCCCCCHH-------HHHHHHHHHHHCC--CCEECC
Q ss_conf 3110011101-1543345205-------8999999988758--947224
Q gi|254780801|r 153 YQLNVEGLMC-IPPAMGNPKP-------HFYLLSEIARECK--LTKLSM 191 (222)
Q Consensus 153 ~~L~i~GLMt-i~p~~~d~~~-------~F~~l~~l~~~~~--~~~LSm 191 (222)
++|++.||-+ +++...|+.. .+....++.++.+ +..|-+
T Consensus 162 ~~l~~~Glh~HvGS~~~d~~~~~~~~~~~~~~~~~~~~~~g~~~~~iDi 210 (377)
T cd06843 162 PNIRLRGFHFHLMSHNLDAAAHLALVKAYLETARQWAAEHGLDLDVVNV 210 (377)
T ss_pred CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 9985677777336788897999999999999999999971997314650
No 30
>cd06839 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Btrk Decarboxylase. This subfamily is composed of Bacillus circulans BtrK decarboxylase and similar proteins. These proteins are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases, eukaryotic ornithine decarboxylases and diaminopimelate decarboxylases. BtrK is presumed to function as a PLP-dependent decarboxylase involved in the biosynthesis of the aminoglycoside antibiotic butirosin. Homodimer formation and the presence of the PLP cofactor may be required for catalytic activity.
Probab=98.57 E-value=1.4e-06 Score=65.49 Aligned_cols=178 Identities=12% Similarity=0.052 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHHH-HHHCCCCCCCCCCCHHHHHHH-HCCCCCCCCCEEEECCCCC
Q ss_conf 99999999999998198964418998718999999999-997298100012100011110-0000125873023024432
Q gi|254780801|r 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRV-ALSCGQVIFAENKLQEAKKKW-IPLRKEWDVQLRFIGSLQS 84 (222)
Q Consensus 7 l~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~~-~~~~G~~~fGENrvQE~~~K~-~~l~~~~~i~wHfIG~LQs 84 (222)
.+.|++++++-...- |+.+++.-..|..|...|.. +.+.|. .|==.-..|+..-. ..++ +=+-+|-|+.-+
T Consensus 14 ~~~i~~~~~~l~~al---p~~~~i~YAvKaN~~~~vl~~l~~~G~-g~DvaS~~El~~al~~G~~---~~~Ii~~gp~K~ 86 (382)
T cd06839 14 RDRVRERYAALRAAL---PPAIEIYYSLKANPNPALVAHLRQLGD-GAEVASAGELALALEAGVP---PEKILFAGPGKS 86 (382)
T ss_pred HHHHHHHHHHHHHHC---CCCCEEEEEECCCCCHHHHHHHHHCCC-EEEEECHHHHHHHHHCCCC---CCCEEEECCCCC
T ss_conf 999999999999858---999759999704899999999997499-0999899999999985999---531076168788
Q ss_pred -CHHHHHCCCC-HHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECC-----------CCCCCCCCCCCHHHHHHHHHHC
Q ss_conf -0013201110-00012222200134433333311430368897004-----------6656346570001222344310
Q gi|254780801|r 85 -NKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG-----------YEIQKSGIMPNQTKDFVILCRQ 151 (222)
Q Consensus 85 -NKvk~i~~~~-~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~-----------~e~~K~G~~p~el~~l~~~i~~ 151 (222)
.-+++++..- .+| ++||....++|.+.+...++..+|+|.||.+ +.++|+|+.++++.++++.+.+
T Consensus 87 ~~~l~~a~~~gv~~i-~~Ds~~El~~i~~~a~~~~~~~~v~lRinp~~~~~~~~~~~~g~~skFGi~~~~~~~~~~~~~~ 165 (382)
T cd06839 87 DAELRRAIEAGIGTI-NVESLEELERIDALAEEHGVVARVALRINPDFELKGSGMKMGGGPSQFGIDVEELPAVLARIAA 165 (382)
T ss_pred HHHHHHHHHCCCCEE-ECCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 899999998399576-4386799999999998639974699998158877877614478854458999999999999984
Q ss_pred CCCCCHHHHEE-CCCCCCCCH-------HHHHHHHHHHHHCC--CCEECCC
Q ss_conf 43110011101-154334520-------58999999988758--9472247
Q gi|254780801|r 152 KYQLNVEGLMC-IPPAMGNPK-------PHFYLLSEIARECK--LTKLSMG 192 (222)
Q Consensus 152 ~~~L~i~GLMt-i~p~~~d~~-------~~F~~l~~l~~~~~--~~~LSmG 192 (222)
.++|++.||-. +|....++. ..+....++.++++ +..|.+|
T Consensus 166 ~~~l~~~Glh~H~GS~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~idiG 216 (382)
T cd06839 166 LPNLRFVGLHIYPGTQILDADALIEAFRQTLALALRLAEELGLPLEFLDLG 216 (382)
T ss_pred CCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 689837888983577778979999999999999999898659885177505
No 31
>cd06817 PLPDE_III_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Eukaryotic D-Serine Dehydratase. This subfamily is composed of chicken D-serine dehydratase (DSD, EC 4.3.1.18) and similar eukaryotic proteins. Chicken DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. It is a fold type III PLP-dependent enzyme with similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as dimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Experimental data suggest that chicken DSD also exists as dimers. Sequence comparison and biochemical experiments show that chicken DSD is distinct from the ubiquitous bacterial DSDs coded by dsdA gene, mammalian L-serine dehydratases (LSD) and mammalian serine racemase (SerRac), which are fold type II PL
Probab=98.54 E-value=5.8e-07 Score=68.16 Aligned_cols=209 Identities=17% Similarity=0.153 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHH-HHHHCC--CCCCCCCCCHHHHHHHHCCCCCCCCCEEEE-CCC
Q ss_conf 9999999999999819896441899871899999999-999729--810001210001111000001258730230-244
Q gi|254780801|r 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIR-VALSCG--QVIFAENKLQEAKKKWIPLRKEWDVQLRFI-GSL 82 (222)
Q Consensus 7 l~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~-~~~~~G--~~~fGENrvQE~~~K~~~l~~~~~i~wHfI-G~L 82 (222)
++.++.+|+.-...+. ...++|-+=.||+-..+|. ..+++| .+-|==..+.|++-=+..-.+. -+..=++ -++
T Consensus 13 ~~~l~~Ni~~M~~~~~--~~gv~lRPH~KTHKs~~ia~~Ql~aG~~a~git~atv~EAe~~a~~G~~~-~~~dil~a~pv 89 (389)
T cd06817 13 RAKFKRNCERMLQRAK--ALGVKFRPHVKTHKTLEGTRLQLGEGRPSRGIVVSTLAEAEFLLPLGEEG-RVDDILYGLPV 89 (389)
T ss_pred HHHHHHHHHHHHHHHH--HCCCCCCCCCHHHCCHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHHC-CCEEEEECCCC
T ss_conf 9999999999999998--75995711517651699999999779983538975799999999854516-62289988857
Q ss_pred CCCHHHHHCCCC----HHCCCCCCCCHHHHHHHHH-HHHCCCEEEEEEEECCCCCCCCCCCCC--HHHHHHHHHHCC-CC
Q ss_conf 320013201110----0001222220013443333-331143036889700466563465700--012223443104-31
Q gi|254780801|r 83 QSNKVSEIVSLF----DVIETVSREKTASLLSLEM-IKQSRFLPVYIQVNTGYEIQKSGIMPN--QTKDFVILCRQK-YQ 154 (222)
Q Consensus 83 QsNKvk~i~~~~----~~Ihsvds~~~a~~L~~~~-~~~~~~~~vliQVN~~~e~~K~G~~p~--el~~l~~~i~~~-~~ 154 (222)
...|++.++... .+.=.||+...++.|+..+ ...+.+++|||+||++ .+|.|+.|+ ++.+++..+.+. ++
T Consensus 90 ~~~kl~rl~~L~~~~~~l~v~VD~~~~v~~L~~~~~~~~g~~l~V~Ievd~G--~~RtGv~~~~~~~~~l~~~i~~~~~~ 167 (389)
T cd06817 90 PPSKLPRLAELSKKLGHLRVMVDNPEQLDFLEQFQPLKSGKKWSVFIKVDCG--THRAGVPPESEDAKELIQKLEKASEA 167 (389)
T ss_pred CHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCC--CCCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 8789999999855398089997479999999999886269825899997889--89678898839999999999856788
Q ss_pred CCHHHHEECCCCC---CC---CH----HHHHHHHHHHHHC----C--CCEECCCCCHH---------HHHHHHHCCCEEE
Q ss_conf 1001110115433---45---20----5899999998875----8--94722477734---------8999980898899
Q gi|254780801|r 155 LNVEGLMCIPPAM---GN---PK----PHFYLLSEIAREC----K--LTKLSMGMTRD---------FELAIASGATSVR 209 (222)
Q Consensus 155 L~i~GLMti~p~~---~d---~~----~~F~~l~~l~~~~----~--~~~LSmGMS~D---------~~~Ai~~Gst~vR 209 (222)
|++.|||+-.-.. .+ .+ ..+..+..+.+.+ + ....|.|=|.- +...-..|.|.+|
T Consensus 168 L~~~Gl~~y~Gh~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~vvs~G~Tpt~~~~~~~~~~~~~~~~~~tEl~ 247 (389)
T cd06817 168 VELFGFYSHAGHSYSSRSAEDAKEVLREEIEAVLTAAKKLKSIQGDRKLTLSVGATPTAHAAEALVLIPAPSLSGLLELH 247 (389)
T ss_pred CEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 35778860487555789999999999999999999999988626998758998588872203554422455556514970
Q ss_pred ECHHHCCCCCC
Q ss_conf 71132389999
Q gi|254780801|r 210 IGSGIFGERPC 220 (222)
Q Consensus 210 iGs~iFG~R~~ 220 (222)
-|+.+|-...|
T Consensus 248 pG~Yvf~D~~~ 258 (389)
T cd06817 248 AGNYPFYDLQQ 258 (389)
T ss_pred CCCEECCCHHH
T ss_conf 24647268878
No 32
>COG3616 Predicted amino acid aldolase or racemase [Amino acid transport and metabolism]
Probab=98.46 E-value=2.6e-06 Score=63.76 Aligned_cols=207 Identities=17% Similarity=0.182 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHH-HHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEE-ECCCC
Q ss_conf 99999999999999819896441899871899999999-99972981000121000111100000125873023-02443
Q gi|254780801|r 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIR-VALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF-IGSLQ 83 (222)
Q Consensus 6 nl~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~-~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHf-IG~LQ 83 (222)
.++....||+..-..+++ ..+++=++-||+....+. ..++.|-.-.=-.-+.|++-.+.. .-.||-|-. +....
T Consensus 24 D~dr~~~Ni~r~qa~~~~--~g~~lrph~KT~k~~~la~~ql~aGa~git~~tl~eae~~a~a--Gi~dIl~a~p~~~~~ 99 (368)
T COG3616 24 DLDRLDGNIDRMQARADD--HGVRLRPHVKTHKCPELARIQLDAGAWGITCATLGEAEVFADA--GIDDILLAYPLPGRA 99 (368)
T ss_pred HHHHHHHHHHHHHHHCCC--CCCEEECCCCCCCCHHHHHHHHHCCCCEEEEECHHHHHHHHCC--CCCCEEEECCCCCHH
T ss_conf 288776369999986054--4836501234335879999998537731576106788998715--865258715887166
Q ss_pred CCH-HHHHCCCCH-HCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCC-CHHHHHHHHHHCCCCCCHHHH
Q ss_conf 200-132011100-00122222001344333333114303688970046656346570-001222344310431100111
Q gi|254780801|r 84 SNK-VSEIVSLFD-VIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP-NQTKDFVILCRQKYQLNVEGL 160 (222)
Q Consensus 84 sNK-vk~i~~~~~-~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p-~el~~l~~~i~~~~~L~i~GL 160 (222)
.-. +..+..-++ ..=-+|+.+-++.++......+++++|||++.++ ..|+|+.. +....+...+...+.|++.|+
T Consensus 100 ~~~~L~~l~~~~~~~~~~iDs~~~~~~l~~~~~~~~~pl~v~iE~D~G--~~R~Gv~t~~~~~~La~~~~~~~~l~~~Gv 177 (368)
T COG3616 100 ALAALAELLADPPRISVLIDSVEQLDALAALARDAGKPLRVLIEIDSG--LHRSGVRTPEVAEALAAEIAAAPGLRLAGV 177 (368)
T ss_pred HHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCC--CCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 899999851899842999578899999999987549974699995788--886675786899999976520466078555
Q ss_pred EECCCCCCCCHHHHH-----HHHHHHHH--CCCCEECCCCCHHHHHHHHH-CCCEEEECHHHCCCC
Q ss_conf 011543345205899-----99999887--58947224777348999980-898899711323899
Q gi|254780801|r 161 MCIPPAMGNPKPHFY-----LLSEIARE--CKLTKLSMGMTRDFELAIAS-GATSVRIGSGIFGER 218 (222)
Q Consensus 161 Mti~p~~~d~~~~F~-----~l~~l~~~--~~~~~LSmGMS~D~~~Ai~~-Gst~vRiGs~iFG~R 218 (222)
||-++....+...+. .+..+... +....+|-|=|.+|+.+... +.|++|=|+.+|..+
T Consensus 178 ~~y~gh~~~~~~~~~~~~~~~a~~~~~~~g~~~~~vt~ggtp~~~~~~~~~~~~e~r~G~Y~~~D~ 243 (368)
T COG3616 178 MTYPGHSYGPGSEVAAAERVHAAALLGAVGRAAPVLTSGGTPTAELVAGLSSTTELRAGNYVFNDL 243 (368)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHCCCCCCEEECCCCEEEHHH
T ss_conf 303663467765333333556899740568766345327887322213577513651673342136
No 33
>cd06830 PLPDE_III_ADC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Arginine Decarboxylase. This subfamily includes plants and biosynthetic prokaryotic arginine decarboxylases (ADC, EC 4.1.1.19). ADC is involved in the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. It catalyzes the decarboxylation of L-arginine to agmatine, which is then hydrolyzed to putrescine by agmatinase. ADC is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Homodimer formation and the presence of both PLP and Mg2+ cofactors may be required for catalytic activity. Prokaryotic ADCs (biodegradative), which are fold type I PLP-dependent enzymes, are not included in this family.
Probab=98.44 E-value=1.3e-05 Score=59.16 Aligned_cols=184 Identities=15% Similarity=0.114 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHH-HHHHHCCCCC-CCCCCC--HHHHHHHHCCCCCCCCCEEE
Q ss_conf 8999999999999999981989644189987189999999-9999729810-001210--00111100000125873023
Q gi|254780801|r 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKI-RVALSCGQVI-FAENKL--QEAKKKWIPLRKEWDVQLRF 78 (222)
Q Consensus 3 i~~nl~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I-~~~~~~G~~~-fGENrv--QE~~~K~~~l~~~~~i~wHf 78 (222)
|++|++.+++-...+..+.+- +...++.=.+|--|...| +.+.++|.+. +|=.=+ -|+.-- ... ..++-+..|
T Consensus 15 ir~~~~~~~~aF~~~~~~~~y-~~~~~~~YAvKAN~n~~vl~~l~~~G~~~~~G~DvvS~gEl~~a-l~a-g~~p~~ii~ 91 (409)
T cd06830 15 LRHRIERLNAAFAKAIEEYGY-KGKYQGVYPIKVNQQREVVEEIVKAGKRYNIGLEAGSKPELLAA-LAL-LKTPDALII 91 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHCC-CCCEEEEEEEEECCHHHHHHHHHHCCCCCCCCEEEECHHHHHHH-HHC-CCCCCCEEE
T ss_conf 999999999999999997287-87628999872068099999999739755883689689999999-976-999996999
Q ss_pred ECCCCCCHHHHHCCC--------CHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEC-----------CCCCCCCCCCC
Q ss_conf 024432001320111--------00001222220013443333331143036889700-----------46656346570
Q gi|254780801|r 79 IGSLQSNKVSEIVSL--------FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNT-----------GYEIQKSGIMP 139 (222)
Q Consensus 79 IG~LQsNKvk~i~~~--------~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~-----------~~e~~K~G~~p 139 (222)
-|. ||-..-++. +.++=.|||+...++|++.+.+.++..+|.|-||. +++.+|+|+++
T Consensus 92 ~~~---~K~~~~i~~a~~~~~~~~~v~iviDs~~El~~i~~~a~~~~~~~~v~lRinp~~~~~~~~~~t~g~~sKFGi~~ 168 (409)
T cd06830 92 CNG---YKDDEYIELALLARKLGHNVIIVIEKLSELDLILELAKKLGVKPLLGVRIKLASKGSGKWQESGGDRSKFGLTA 168 (409)
T ss_pred ECC---CCCHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 499---89999999999847567653664599999999999999709995078998536688876411378631359999
Q ss_pred CHHHHHHHHHHCCCCC-CHHHH-EECCCCCCCCHHH---HHHHHHHHHHC-----CCCEECCC
Q ss_conf 0012223443104311-00111-0115433452058---99999998875-----89472247
Q gi|254780801|r 140 NQTKDFVILCRQKYQL-NVEGL-MCIPPAMGNPKPH---FYLLSEIAREC-----KLTKLSMG 192 (222)
Q Consensus 140 ~el~~l~~~i~~~~~L-~i~GL-Mti~p~~~d~~~~---F~~l~~l~~~~-----~~~~LSmG 192 (222)
+++.++++.+.+...+ ++.|| +-||+.-.|+.+. +.++.++.+++ .+..|.+|
T Consensus 169 ~~~~~~~~~~~~~~~~~~l~glH~HIGSQi~d~~~~~~a~~~~~~~~~~l~~~g~~l~~ldlG 231 (409)
T cd06830 169 SEILEVVEKLKEAGMLDRLKLLHFHIGSQITDIRRIKSALREAARIYAELRKLGANLRYLDIG 231 (409)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 999999999985799775568998527898888999999999999999999848995267506
No 34
>cd06811 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX. This subfamily is composed of the uncharacterized protein yhfX from Escherichia coli K-12 and similar bacterial proteins. These proteins are homologous to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=98.40 E-value=4.7e-06 Score=62.04 Aligned_cols=208 Identities=18% Similarity=0.213 Sum_probs=148.3
Q ss_pred HHHHHHHHHHHHHHCCCCHHHCEEEEECCCC--CHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCC-
Q ss_conf 9999999999999819896441899871899--9999999997298100012100011110000012587302302443-
Q gi|254780801|r 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMV--DSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQ- 83 (222)
Q Consensus 7 l~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~--~~e~I~~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQ- 83 (222)
++.|.++-+.-.+.+.| ..++|-+.||-+ +..-.+.+.++|+.-.= +=+..+ +..+. ..++..--+|||+
T Consensus 35 lD~v~~NAr~l~~~A~~--~gi~Ly~MtKQ~GRNP~l~~~l~~~G~~g~V---aVD~kE-A~~l~-~~gl~vghvGHLVQ 107 (382)
T cd06811 35 LDQIEENARLLAETAEK--YGIELYFMTKQFGRNPFLARALLEAGIPGAV---AVDFKE-ARALH-EAGLPLGHVGHLVQ 107 (382)
T ss_pred HHHHHHHHHHHHHHHHH--CCCEEEEEEECCCCCHHHHHHHHHCCCCCEE---EEEHHH-HHHHH-HCCCCCCCCCCCCC
T ss_conf 89999999999999997--3968999961058998999999973998568---960999-99999-85998344157136
Q ss_pred --CCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCC----CCCCCCCCCHHHHHHHHHHCCCCCCH
Q ss_conf --200132011100001222220013443333331143036889700466----56346570001222344310431100
Q gi|254780801|r 84 --SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE----IQKSGIMPNQTKDFVILCRQKYQLNV 157 (222)
Q Consensus 84 --sNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e----~~K~G~~p~el~~l~~~i~~~~~L~i 157 (222)
++-+..++..-.-+=||-|+..|++|+..|.+.++.+++|+.|--.++ -|-+||..+++.++++.+..++++++
T Consensus 108 iP~~~v~~iv~~~PeviTVfS~ekA~eis~aA~~~g~~Q~illrV~~~~D~~Y~GQegGf~l~eL~~v~~~i~~l~gi~i 187 (382)
T cd06811 108 IPRHQVPAVLAMRPEVITVYSLEKAREISDAAVELGRVQDVLLRVYGDEDTLYPGQEGGFPLEELPAVLAAIKALPGIRI 187 (382)
T ss_pred CCHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEEHHHHHHHHHHHHHCCCCEE
T ss_conf 85768999997499789992099999999999981973326999964898463775377548999999999972899679
Q ss_pred HHHEECCCCCCC-------CHHHHHHHHH---HHHHCC--CCEECCC---CCHHHHHHHHHCCCEEEECHHHCCCCCCC
Q ss_conf 111011543345-------2058999999---988758--9472247---77348999980898899711323899999
Q gi|254780801|r 158 EGLMCIPPAMGN-------PKPHFYLLSE---IARECK--LTKLSMG---MTRDFELAIASGATSVRIGSGIFGERPCQ 221 (222)
Q Consensus 158 ~GLMti~p~~~d-------~~~~F~~l~~---l~~~~~--~~~LSmG---MS~D~~~Ai~~Gst~vRiGs~iFG~R~~~ 221 (222)
.|+-..|-+-=| |.+.+..+.+ +.++.+ ..+++|. -..-.+.=-+.|.|+.--|-+|-|.-|+.
T Consensus 188 ~GvT~FPc~L~d~~~~~~~pT~N~~Tl~~A~~~L~~~G~~~~qvN~PSaTs~~tlp~La~~G~Th~EPGHaLTGTtP~h 266 (382)
T cd06811 188 AGLTSFPCFLYDEEQGDIAPTPNLFTLLKAKELLEKRGIEILQLNAPSATSCATLPLLAEYGVTHGEPGHALTGTTPLH 266 (382)
T ss_pred EEEECEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 6643200687747779511585299999999999975986279506851147659999984886678874124788554
No 35
>TIGR01048 lysA diaminopimelate decarboxylase; InterPro: IPR002986 Pyridoxal-dependent decarboxylases that act on ornithine-, lysine-, arginine- and related substrates can be classified into different families on the basis of sequence similarity , . One of these families includes ornithine decarboxylase (ODC), which catalyses the transformation of ornithine into putrescine; prokaryotic diaminopimelic acid decarboxylase (DAPDC), which catalyses the conversion of diaminopimelic acid into lysine, the final step of lysine biosynthesis; Pseudomonas syringae pv. tabaci protein, tabA, which is probably involved in tabtoxin biosynthesis and is similar to DAPDC; and bacterial and plant biosynthetic arginine decarboxylase (ADC), which catalyses the transformation of arginine into agmatine, the first step in putrescine synthesis from arginine. Although these proteins, which are known collectively as group IV decarboxylases , probably share a common evolutionary origin, their levels of sequence similarity are low, being confined to a few short conserved regions. These conserved motifs suggest a common structural arrangement for positioning of substrate and the cofactor pyridoxal 5'-phosphate among bacterial DAP decarboxylases, eukaryotic ornithine decarboxylases and arginine decarboxylases . The structure of bacterial diaminopimelate decarboxylase has been determined . ; GO: 0008836 diaminopimelate decarboxylase activity, 0009089 lysine biosynthetic process via diaminopimelate.
Probab=98.37 E-value=5.8e-07 Score=68.17 Aligned_cols=179 Identities=16% Similarity=0.130 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHHCCCC-HHHCEEEEECCCCCHHHHHHHHH-C--CCCC--CCCCCCHHHHHHHHCCC--CCCCCCEEEE
Q ss_conf 99999999999981989-64418998718999999999997-2--9810--00121000111100000--1258730230
Q gi|254780801|r 8 QVFKQKIENSAILAKRP-KDSVSLVAVSKMVDSKKIRVALS-C--GQVI--FAENKLQEAKKKWIPLR--KEWDVQLRFI 79 (222)
Q Consensus 8 ~~i~~~I~~a~~~~gR~-~~~v~LiaVtK~~~~e~I~~~~~-~--G~~~--fGENrvQE~~~K~~~l~--~~~~i~wHfI 79 (222)
+.|+++..+..+..+.. .....+.=..|-.+--.|..++. + |.+. -||=+. .+.+.++ .. .-+-+|=
T Consensus 33 ~~l~~~~~~~~~AF~~~~~~~~~v~YA~KAn~Nl~~~~~la~~G~G~D~VS~GEL~~----A~~AG~~~~~~-~~~i~F~ 107 (431)
T TIGR01048 33 ATLRERFEAYKEAFGAAERESALVCYAVKANSNLALLRLLAELGSGFDVVSGGELYR----ALAAGFPLQEI-PEKIVFS 107 (431)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHCCHHHHHHHHHCCCCEEEEEHHHHHH----HHHHCCCCCCC-CCCEEEE
T ss_conf 899999999998730158775315874314076889999996388468870169999----99808885566-6436896
Q ss_pred CCCCCC-HHHHHCCC-CHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEE------------CCCCCCCCCCCCC--HHH
Q ss_conf 244320-01320111-0000122222001344333333114303688970------------0466563465700--012
Q gi|254780801|r 80 GSLQSN-KVSEIVSL-FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPN--QTK 143 (222)
Q Consensus 80 G~LQsN-Kvk~i~~~-~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN------------~~~e~~K~G~~p~--el~ 143 (222)
|+==|. -+..+++. .-+| .|||....+.|++.|.+.|++.+|+|-|| ||.+.||+||.++ +..
T Consensus 108 Gn~Ks~~El~~Al~~~i~~~-nVdS~~El~~l~~~A~e~G~~~~i~~RvNP~VdakTHpyI~TG~~~sKFG~~~~sG~a~ 186 (431)
T TIGR01048 108 GNGKSRAELERALELGIRCI-NVDSFSELELLNEIAPELGKKARISLRVNPDVDAKTHPYISTGLKDSKFGIDVESGEAL 186 (431)
T ss_pred CCCCCHHHHHHHHHCCCCEE-EECCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCH
T ss_conf 58778899999996379899-97688999999973521385589999726887598783122100036547774575317
Q ss_pred HHHHHHHCCCCCCHHHH-EECCCCCCCC---HHHHHHHHHHHHHC------CCCEECCC
Q ss_conf 22344310431100111-0115433452---05899999998875------89472247
Q gi|254780801|r 144 DFVILCRQKYQLNVEGL-MCIPPAMGNP---KPHFYLLSEIAREC------KLTKLSMG 192 (222)
Q Consensus 144 ~l~~~i~~~~~L~i~GL-Mti~p~~~d~---~~~F~~l~~l~~~~------~~~~LSmG 192 (222)
+.+..+.+.+||++.|| |=||+.-.|. ...+.++.++.+++ .+.+|.+|
T Consensus 187 ~~~~~a~~~~~l~~vG~H~HIGSQi~d~~Pf~~A~~~v~~~~~~l~~~yG~~l~~ld~G 245 (431)
T TIGR01048 187 EAYLYALQLENLEIVGIHCHIGSQILDLSPFVEAAEKVVKLVEELKAEYGIDLEFLDLG 245 (431)
T ss_pred HHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECC
T ss_conf 89999983789938998643373010234079999999999998888716007999838
No 36
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism]
Probab=98.31 E-value=2.2e-05 Score=57.55 Aligned_cols=174 Identities=18% Similarity=0.166 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHHHHHHC---CCCCCCCCCCHHHHHHHH-CCCCCCCCCEEEECCCCC
Q ss_conf 9999999999981989644189987189999999999972---981000121000111100-000125873023024432
Q gi|254780801|r 9 VFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSC---GQVIFAENKLQEAKKKWI-PLRKEWDVQLRFIGSLQS 84 (222)
Q Consensus 9 ~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~~~~~~---G~~~fGENrvQE~~~K~~-~l~~~~~i~wHfIG~LQs 84 (222)
.++++++......... ..++.-..|..|...|..++.- |.+.... -|+..-.. .++ ++ +-||=|+.-|
T Consensus 36 ~l~~~~~~~~~a~~~~--~~~i~yAvKAn~~~~il~~l~~~g~g~Dv~S~---gEl~~al~aG~~--~~-~I~f~g~~ks 107 (394)
T COG0019 36 TLRRNARELKSAFPGS--GAKVFYAVKANSNPAILRLLAEEGSGFDVASL---GELELALAAGFP--PE-RIVFSGPAKS 107 (394)
T ss_pred HHHHHHHHHHHHHCCC--CCEEEEEECCCCCHHHHHHHHHHCCCCEECCH---HHHHHHHHCCCC--HH-EEEECCCCCC
T ss_conf 9999999999861567--81599997468987999999973888653489---999999983999--22-0999189999
Q ss_pred C-HHHHHCCCCHH-CCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECC------------CCCCCCCCCCCHHHHHHHHHH
Q ss_conf 0-01320111000-012222200134433333311430368897004------------665634657000122234431
Q gi|254780801|r 85 N-KVSEIVSLFDV-IETVSREKTASLLSLEMIKQSRFLPVYIQVNTG------------YEIQKSGIMPNQTKDFVILCR 150 (222)
Q Consensus 85 N-Kvk~i~~~~~~-Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~------------~e~~K~G~~p~el~~l~~~i~ 150 (222)
. -+..+++.-.. | .+||....++|++.+... +.+|++.||.+ .+.+|+|+.++++.+.+....
T Consensus 108 ~~ei~~a~e~gi~~i-~vdS~~El~~l~~~a~~~--~~~v~lRInP~~~~~th~~~~tg~~~sKFG~~~~~a~~~~~~~~ 184 (394)
T COG0019 108 EEEIAFALELGIKLI-NVDSEEELERLSAIAPGL--VARVSLRINPGVSAGTHEYIATGGKSSKFGISPEEALDVLERAA 184 (394)
T ss_pred HHHHHHHHHCCCCEE-EECCHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 999999998699389-979999999999864566--74499998899877758666778630236989889899999986
Q ss_pred CCCCCCHHHHEE-CCCCCCCCHH---HHHHHHHHHHHC------CCCEECCCC
Q ss_conf 043110011101-1543345205---899999998875------894722477
Q gi|254780801|r 151 QKYQLNVEGLMC-IPPAMGNPKP---HFYLLSEIAREC------KLTKLSMGM 193 (222)
Q Consensus 151 ~~~~L~i~GLMt-i~p~~~d~~~---~F~~l~~l~~~~------~~~~LSmGM 193 (222)
+.+++++.||++ ++....|..+ .+..+.+++.++ .+..+++|=
T Consensus 185 ~~~~l~~~Glh~HiGSq~~d~~~~~~a~~~~~~~~~~~~~~~g~~l~~inlGG 237 (394)
T COG0019 185 KLLGLELVGLHFHIGSQITDLDPFEEALAKVEELFGRLAEELGIQLEWLNLGG 237 (394)
T ss_pred HCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 46788248999851787888089999999999999998875088740899669
No 37
>cd06828 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=98.28 E-value=2e-05 Score=57.76 Aligned_cols=162 Identities=19% Similarity=0.111 Sum_probs=106.6
Q ss_pred HHCEEEEECCCCCHHHHHH-HHHCCCCCCCCCCCHHHHHHH-HCCCCCCCCCEEEECCCCC-CHHHHHCCCC-HHCCCCC
Q ss_conf 4418998718999999999-997298100012100011110-0000125873023024432-0013201110-0001222
Q gi|254780801|r 26 DSVSLVAVSKMVDSKKIRV-ALSCGQVIFAENKLQEAKKKW-IPLRKEWDVQLRFIGSLQS-NKVSEIVSLF-DVIETVS 101 (222)
Q Consensus 26 ~~v~LiaVtK~~~~e~I~~-~~~~G~~~fGENrvQE~~~K~-~~l~~~~~i~wHfIG~LQs-NKvk~i~~~~-~~Ihsvd 101 (222)
..+++.-..|..|...|.. +.+.|. .|==.-..|+..-. ..++ .-+.+|-|+.-+ .-++.++++- ..| ++|
T Consensus 27 ~~~~i~yAvKaN~~~~il~~l~~~g~-g~dvaS~~El~~al~~G~~---~~~Ii~~gp~K~~~~i~~A~~~gv~~i-~~D 101 (373)
T cd06828 27 PGFKICYAVKANSNLAILKLLAEEGL-GADVVSGGELYRALKAGFP---PERIVFTGNGKSDEELELALELGILRI-NVD 101 (373)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHCC-EEEEECHHHHHHHHHCCCC---HHHEEECCCCCCHHHHHHHHHCCCCEE-EEC
T ss_conf 89789998622799999999998599-1899799999999984999---545998176411378999997398567-629
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEEEEECC------------CCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEE-CCCCCC
Q ss_conf 2200134433333311430368897004------------665634657000122234431043110011101-154334
Q gi|254780801|r 102 REKTASLLSLEMIKQSRFLPVYIQVNTG------------YEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC-IPPAMG 168 (222)
Q Consensus 102 s~~~a~~L~~~~~~~~~~~~vliQVN~~------------~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMt-i~p~~~ 168 (222)
|+...++|.+.+.+.++..+|+|-||.+ +..+|+|+.++++.++++.+.++++|++.||-. ++....
T Consensus 102 s~~El~~i~~~~~~~~~~~~v~lRinp~~~~~~~~~~~~~~~~sKFG~~~~~~~~~~~~~~~~~~l~~~GlhfHvGS~~~ 181 (373)
T cd06828 102 SLSELERLGEIAPELGKGAPVALRVNPGVDAGTHPYISTGGKDSKFGIPLEQALEAYRRAKELPGLKLVGLHCHIGSQIL 181 (373)
T ss_pred CHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCC
T ss_conf 99999999986276199854999988898877776231377532138999999999999985799846887886476668
Q ss_pred CCH---HHHHHHHHHHHH-----CCCCEECCC
Q ss_conf 520---589999999887-----589472247
Q gi|254780801|r 169 NPK---PHFYLLSEIARE-----CKLTKLSMG 192 (222)
Q Consensus 169 d~~---~~F~~l~~l~~~-----~~~~~LSmG 192 (222)
|+. .....+.++.++ ..+..|.+|
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~ldiG 213 (373)
T cd06828 182 DLEPFVEAAEKLLDLAAELRELGIDLEFLDLG 213 (373)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCEEECC
T ss_conf 87999999999999999999749986577436
No 38
>cd06841 PLPDE_III_MccE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme MccE. This subfamily is composed of uncharacterized proteins with similarity to Escherichia coli MccE, a hypothetical protein that is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Most members of this subfamily share the same domain architecture as ODC and DapDC. A few members, including Escherichia coli MccE, contain an additional acetyltransferase domain at the C-terminus.
Probab=98.18 E-value=3.5e-05 Score=56.15 Aligned_cols=180 Identities=13% Similarity=0.097 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHHH-HHHCCCCCCCCCCCHHHHH-HHHCCCCCCCCCEEEECCCCC-
Q ss_conf 9999999999998198964418998718999999999-9972981000121000111-100000125873023024432-
Q gi|254780801|r 8 QVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRV-ALSCGQVIFAENKLQEAKK-KWIPLRKEWDVQLRFIGSLQS- 84 (222)
Q Consensus 8 ~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~~-~~~~G~~~fGENrvQE~~~-K~~~l~~~~~i~wHfIG~LQs- 84 (222)
+.|+++++.......+....+++.-..|..|...|.. +.+.|.- |==.-..|+.. +...++ .-+.+|-|+.-+
T Consensus 15 ~~l~~n~~~l~~~~~~~~p~~~i~YAvKaN~~~~vl~~l~~~G~g-~DvaS~~El~~al~~g~~---~~~Ii~~gp~K~~ 90 (379)
T cd06841 15 DALRENYRELLGAFKKRYPNVVIAYSYKTNYLPAICKILHEEGGY-AEVVSAMEYELALKLGVP---GKRIIFNGPYKSK 90 (379)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCC-EEEECHHHHHHHHHCCCC---CCEEEECCCCCCH
T ss_conf 999999999999987608982999996217589999999983998-599899999999985999---3229988998987
Q ss_pred CHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEC---CCCCCCCCCCCCHHHHHHHHH---HCCCCCCHH
Q ss_conf 00132011100001222220013443333331143036889700---466563465700012223443---104311001
Q gi|254780801|r 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNT---GYEIQKSGIMPNQTKDFVILC---RQKYQLNVE 158 (222)
Q Consensus 85 NKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~---~~e~~K~G~~p~el~~l~~~i---~~~~~L~i~ 158 (222)
.-++.++++-..| ++||+...++|.+.+...++.++|.|-||. ++..+|+|+.++++.+++..+ ...++|++.
T Consensus 91 ~~i~~a~~~g~~i-~vDs~~El~~l~~~a~~~~~~~~i~lRvn~~~~~~~~skFG~~~~~~~~~l~~~~~~~~~~~l~~~ 169 (379)
T cd06841 91 EELEKALEEGALI-NIDSFDELERILEIAKELGRVAKVGIRLNMNYGNNVWSRFGFDIEENGEALAALKKIQESKNLSLV 169 (379)
T ss_pred HHHHHHHHCCCCC-CCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 9999999859930-448889999999999864997479999658888886434699989999999999987545897299
Q ss_pred HHEE-CCCCCCCCHHHHHHHHH---HHHHC---CCCEECCC
Q ss_conf 1101-15433452058999999---98875---89472247
Q gi|254780801|r 159 GLMC-IPPAMGNPKPHFYLLSE---IAREC---KLTKLSMG 192 (222)
Q Consensus 159 GLMt-i~p~~~d~~~~F~~l~~---l~~~~---~~~~LSmG 192 (222)
||.+ ++....|+......+.. +.+++ .+..|.+|
T Consensus 170 GlhfHvGS~~~d~~~~~~~~~~~~~~~~~~~~~~~~~idiG 210 (379)
T cd06841 170 GLHCHVGSNILNPEAYSAAAKKLIELLDRLFGLELEYLDLG 210 (379)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 99988898758989999999999999999619996099807
No 39
>TIGR03099 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, exosortase system type 1 associated. The sequences in this family contain the pyridoxal binding domain (pfam02784) and C-terminal sheet domain (pfam00278) of a family of Pyridoxal-dependent decarboxylases. Characterized enzymes in this family decarboxylate substrates such as ornithine, diaminopimelate and arginine. The genes of the family modeled here, with the exception of those observed in certain Burkholderia species, are all found in the context of exopolysaccharide biosynthesis loci containing the exosortase/PEP-CTERM protein sorting system. More specifically, these are characteristic of the type 1 exosortase system represented by the Genome Property GenProp0652. The substrate of these enzymes may be a precursor of the carrier or linker which is hypothesized to release the PEP-CTERM protein from the exosortase enzyme. These enzymes are apparently most closely related to the diaminopimelate decarboxylase modeled by TIGR01048
Probab=98.12 E-value=5.4e-05 Score=54.90 Aligned_cols=176 Identities=11% Similarity=0.061 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHHHHH-HCCCCCCCCCCCHHHHHH-HHCCCCCCCCCEEEECCCCC
Q ss_conf 9999999999999819896441899871899999999999-729810001210001111-00000125873023024432
Q gi|254780801|r 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVAL-SCGQVIFAENKLQEAKKK-WIPLRKEWDVQLRFIGSLQS 84 (222)
Q Consensus 7 l~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~~~~-~~G~~~fGENrvQE~~~K-~~~l~~~~~i~wHfIG~LQs 84 (222)
.+.|++++++..... |+.+++.=..|.-|.-.|...+ ++|. .|-=.-..|+..- ...++ .=+..|-|+.-+
T Consensus 32 ~~~l~~~~~~l~~a~---p~~~~i~YAvKaN~~~~il~~l~~~G~-g~DvaS~gEl~~al~~G~~---~~~Ii~~gp~K~ 104 (398)
T TIGR03099 32 RGLVSERVAALRKAL---PEELAIHYAVKANPMPALLAHMAPLVD-GFDVASAGELAVALDTGYD---PGCISFAGPGKT 104 (398)
T ss_pred HHHHHHHHHHHHHHC---CCCCEEEEEEECCCCHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCC---CHHEEECCCCCC
T ss_conf 999999999999857---999849999602899999999998199-2999699999999984999---100177899879
Q ss_pred C-HHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECC-----------CCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 0-01320111000012222200134433333311430368897004-----------66563465700012223443104
Q gi|254780801|r 85 N-KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG-----------YEIQKSGIMPNQTKDFVILCRQK 152 (222)
Q Consensus 85 N-Kvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~-----------~e~~K~G~~p~el~~l~~~i~~~ 152 (222)
. -+++++..=-.| ++||+..+++|++.+.+.++..+|+|.||.+ +.++|+|+.++++.++++.+++.
T Consensus 105 ~~~l~~A~~~gv~i-~vDS~~El~~i~~~a~~~~~~~~i~lRinp~~~~~~~~~~~~~~~sKFGi~~~~~~~~l~~~~~~ 183 (398)
T TIGR03099 105 DAELRRALAAGVLI-NVESLRELNRLAALSEALGLRARVAVRVNPDFELKGSGMKMGGGAKQFGIDAEQVPAALAFIKAA 183 (398)
T ss_pred HHHHHHHHHCEEEE-EECCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 79999887560599-64446889999998876599606998616887668786012888554678999999999999866
Q ss_pred CCCCHHHHEE-CCCCCCCCHHHH---H----HHHHHHHHCC--CCEECC
Q ss_conf 3110011101-154334520589---9----9999988758--947224
Q gi|254780801|r 153 YQLNVEGLMC-IPPAMGNPKPHF---Y----LLSEIARECK--LTKLSM 191 (222)
Q Consensus 153 ~~L~i~GLMt-i~p~~~d~~~~F---~----~l~~l~~~~~--~~~LSm 191 (222)
+|++.||-+ +|....|+.... . ...++.++++ +..|.+
T Consensus 184 -~l~~~Glh~HiGS~~~~~~~~~~a~~~~~~~~~~l~~~~g~~l~~idi 231 (398)
T TIGR03099 184 -DLDFQGFHIFAGSQNLNAEAIIEAQAKTLALALRLAESAPAPVRVINI 231 (398)
T ss_pred -CCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf -992999899269898896999999999999999999975997527762
No 40
>cd06810 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes. This family includes eukaryotic ornithine decarboxylase (ODC, EC 4.1.1.17), diaminopimelate decarboxylase (DapDC, EC 4.1.1.20), plant and prokaryotic biosynthetic arginine decarboxylase (ADC, EC 4.1.1.19), carboxynorspermidine decarboxylase (CANSDC), and ODC-like enzymes from diverse bacterial species. These proteins are fold type III PLP-dependent enzymes that catalyze essential steps in the biosynthesis of polyamine and lysine. ODC and ADC participate in alternative pathways of the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. ODC catalyzes the direct synthesis of putrescine from L-ornithine, while ADC converts L-arginine to agmatine, which is hydrolysed to putrescine by agmatinase in a pathway that exists only in plants and bacteria. DapDC converts meso-2,6-diaminoheptanedioate to
Probab=98.09 E-value=7.8e-05 Score=53.82 Aligned_cols=176 Identities=15% Similarity=0.125 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHHH-HHHCCCCCCCCCCCHHHHHH-HHCCCCCCCCCEEEECCCCC-
Q ss_conf 9999999999998198964418998718999999999-99729810001210001111-00000125873023024432-
Q gi|254780801|r 8 QVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRV-ALSCGQVIFAENKLQEAKKK-WIPLRKEWDVQLRFIGSLQS- 84 (222)
Q Consensus 8 ~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~~-~~~~G~~~fGENrvQE~~~K-~~~l~~~~~i~wHfIG~LQs- 84 (222)
+.|+++++.....- +..+++.-..|..|...|.. +.+.|. -|==.-..|+.-- ...++ .-+-.|-|+.-+
T Consensus 9 ~~l~~~~~~~~~~~---~~~~~i~YAvKaN~~~~vl~~l~~~g~-g~dvaS~~El~~al~~G~~---~~~Ii~~gp~K~~ 81 (368)
T cd06810 9 DIIRAHYAALKEAL---PSGVKLFYAVKANPNPHVLRTLAEAGT-GFDVASKGELALALAAGVP---PERIIFTGPAKSV 81 (368)
T ss_pred HHHHHHHHHHHHHC---CCCCEEEEEECCCCCHHHHHHHHHHCC-EEEEECHHHHHHHHHCCCC---HHHEEEECCCCCC
T ss_conf 99999999999757---999789999653899999999998599-1897799999999985999---4419994554530
Q ss_pred CHHHHHCCC-CHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECC-----------CCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 001320111-000012222200134433333311430368897004-----------66563465700012223443104
Q gi|254780801|r 85 NKVSEIVSL-FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG-----------YEIQKSGIMPNQTKDFVILCRQK 152 (222)
Q Consensus 85 NKvk~i~~~-~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~-----------~e~~K~G~~p~el~~l~~~i~~~ 152 (222)
.-++.++++ ...| ++||+...++|...+.+.+...+|+|-||.+ +..+|+|+.++++.+++..+++.
T Consensus 82 ~~l~~a~~~gv~~i-~~Ds~~El~~i~~~~~~~~~~~~i~lRinp~~~~~~~~~~~~~~~sKFGi~~~~~~~~~~~~~~~ 160 (368)
T cd06810 82 SEIEAALASGVDHI-VVDSLDELERLNELAKKLGPKARILLRVNPDVSAGTHKISTGGLKSKFGLSLSEARAALERAKEL 160 (368)
T ss_pred HHHHHHHHCCCCCE-EECCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 56999997597845-55799999999999985699975999994487877521036888776799999999999999865
Q ss_pred CCCCHHHHEE-CCCCCCCCH---HHHHHHHHHHHHC-----CCCEECCC
Q ss_conf 3110011101-154334520---5899999998875-----89472247
Q gi|254780801|r 153 YQLNVEGLMC-IPPAMGNPK---PHFYLLSEIAREC-----KLTKLSMG 192 (222)
Q Consensus 153 ~~L~i~GLMt-i~p~~~d~~---~~F~~l~~l~~~~-----~~~~LSmG 192 (222)
++++.||.. ++....|+. .....+.++.+.+ .+..|.+|
T Consensus 161 -~l~l~GlhfH~GS~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~idiG 208 (368)
T cd06810 161 -DLRLVGLHFHVGSQILDLETIVQALSDARELIEELVEMGFPLEMLDLG 208 (368)
T ss_pred -CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECC
T ss_conf -996789999768776886999999999999999998629985346437
No 41
>cd06842 PLPDE_III_Y4yA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA. This subfamily is composed of the hypothetical Rhizobium sp. protein Y4yA and similar uncharacterized bacterial proteins. These proteins are homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarboxylases.
Probab=98.06 E-value=8.4e-05 Score=53.63 Aligned_cols=180 Identities=12% Similarity=0.050 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHHH-HHHCCCCCCCCCCCHHHHHH-HHCCCCCCCCCEEEECCCCCC
Q ss_conf 9999999999998198964418998718999999999-99729810001210001111-000001258730230244320
Q gi|254780801|r 8 QVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRV-ALSCGQVIFAENKLQEAKKK-WIPLRKEWDVQLRFIGSLQSN 85 (222)
Q Consensus 8 ~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~~-~~~~G~~~fGENrvQE~~~K-~~~l~~~~~i~wHfIG~LQsN 85 (222)
+.|++++++..........++++.=..|..|.-.|.. +.+.|. -+-=.-.+|+..- ...++ .-+-.|-|+--|.
T Consensus 18 ~~ir~n~~~l~~a~~~~~~~~~i~YAvKAN~~~~il~~l~~~G~-g~Dv~S~gEl~~al~aG~~---~~~Iv~~g~~Ks~ 93 (423)
T cd06842 18 QTFRENIAALRAVLDRHGVDGRVYFARKANKSLALVRAAAAAGI-GVDVASLAELRQALAAGVR---GDRIVATGPAKTD 93 (423)
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCC---HHHEEECCCCCCH
T ss_conf 99999999999998755998269998610689999999998499-2898699999999985998---7998973898998
Q ss_pred H-HHHHCCCCHHCCCCCCCCHHHHHHHHHHHH-CCCEEEEEEEE--CCCCCCCCCCCCCHHHHHHHHHHC-CCCCCHHHH
Q ss_conf 0-132011100001222220013443333331-14303688970--046656346570001222344310-431100111
Q gi|254780801|r 86 K-VSEIVSLFDVIETVSREKTASLLSLEMIKQ-SRFLPVYIQVN--TGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGL 160 (222)
Q Consensus 86 K-vk~i~~~~~~Ihsvds~~~a~~L~~~~~~~-~~~~~vliQVN--~~~e~~K~G~~p~el~~l~~~i~~-~~~L~i~GL 160 (222)
. ++.++..--.| +|||+...++|+..+.+. +++.+|+|-|| ++...+|+|+.++++.++++.+.. .++|++.||
T Consensus 94 ~ei~~Ai~~gv~i-~vDs~~El~~l~~~a~~~~~~~~~V~lRvnp~~~~~~sKFGi~~~~~~~~l~~~~~~~~~l~~~Gl 172 (423)
T cd06842 94 EFLWLAVRHGATI-AVDSLDELDRLLALARGYTTGPARVLLRLSPFPASLPSRFGMPAAEVRTALERLAQLRERVRLVGF 172 (423)
T ss_pred HHHHHHHHCCCEE-EECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 9999999859989-978999999999998760799627999867899999999989999999999999963999836898
Q ss_pred EE-CCCCCCCC-HHHHHHHHHHHHH-----CCCCEECCC
Q ss_conf 01-15433452-0589999999887-----589472247
Q gi|254780801|r 161 MC-IPPAMGNP-KPHFYLLSEIARE-----CKLTKLSMG 192 (222)
Q Consensus 161 Mt-i~p~~~d~-~~~F~~l~~l~~~-----~~~~~LSmG 192 (222)
-+ ++....+. ...+..+.++.+. ..+..+.+|
T Consensus 173 H~HiGs~~~~~~~~a~~~~~~~~~~~~~~g~~l~~idiG 211 (423)
T cd06842 173 HFHLDGYSAAQRVAALQECLPLIDRARALGLAPRFIDIG 211 (423)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf 886488772789999999999999999529997789718
No 42
>cd06840 PLPDE_III_Bif_AspK_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bifunctional Aspartate Kinase/Diaminopimelate Decarboxylase. Bifunctional aspartate kinase/diaminopimelate decarboxylase (AspK/DapDC, EC 4.1.1.20/EC 2.7.2.4) typically exists in bacteria. These proteins contain an N-terminal AspK region and a C-terminal DapDC region, which contains a PLP-binding TIM-barrel domain followed by beta-sandwich domain, characteristic of fold type III PLP-dependent enzymes. Members of this subfamily have not been fully characterized. Based on their sequence, these proteins may catalyze both reactions catalyzed by AspK and DapDC. AspK catalyzes the phosphorylation of L-aspartate to produce 4-phospho-L-aspartate while DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine.
Probab=97.69 E-value=0.00095 Score=46.52 Aligned_cols=174 Identities=14% Similarity=0.076 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHHH-HHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCC
Q ss_conf 99999999999998198964418998718999999999-99729810001210001111000001258730230244320
Q gi|254780801|r 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRV-ALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85 (222)
Q Consensus 7 l~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~~-~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQsN 85 (222)
++.|+++++.-.. . ...+++.=..|.-|...|.. +.++|. -|==.-..|+..-...++....-+.-|-|+.-+.
T Consensus 19 ~~~i~~~~~~~~~-~---~~~~~~~YAvKaN~~~~vl~~l~~~G~-g~dvaS~~El~~al~~~~G~~~~~Iv~~gp~K~~ 93 (368)
T cd06840 19 LETVRARARQVSA-L---KAVDSLFYAIKANPHPDVLRTLEEAGL-GFECVSIGELDLVLKLFPDLDPRRVLFTPNFAAR 93 (368)
T ss_pred HHHHHHHHHHHHH-C---CCCCCEEEEEECCCCHHHHHHHHHCCC-CEEEECHHHHHHHHHHHCCCCHHHEEECCCCCCH
T ss_conf 9999999999972-5---787818999704899999999998199-8699899999999986469986886856788999
Q ss_pred H-HHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECC------------CCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 0-1320111000012222200134433333311430368897004------------66563465700012223443104
Q gi|254780801|r 86 K-VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG------------YEIQKSGIMPNQTKDFVILCRQK 152 (222)
Q Consensus 86 K-vk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~------------~e~~K~G~~p~el~~l~~~i~~~ 152 (222)
+ +++++..--.| ++||+..++++...+. ..+|+|.||.+ +..+|+|+.++++.++++.++.
T Consensus 94 ~~l~~A~~~gv~i-~~Ds~~el~~i~~~~~----~~~v~lRinp~~~~~~~~~~~~~~~~sKFG~~~~e~~~~l~~~~~- 167 (368)
T cd06840 94 SEYEQALELGVNV-TVDNLHPLREWPELFR----GREVILRIDPGQGEGHHKHVRTGGPESKFGLDVDELDEARDLAKK- 167 (368)
T ss_pred HHHHHHHHCCCEE-EECCHHHHHHHHHHCC----CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-
T ss_conf 9999999859959-9888999999987525----880899982686876666420588602479987889999999985-
Q ss_pred CCCCHHHHEE-CCCCCCCCH---HHHHHHHHHHHHCC-CCEECC
Q ss_conf 3110011101-154334520---58999999988758-947224
Q gi|254780801|r 153 YQLNVEGLMC-IPPAMGNPK---PHFYLLSEIARECK-LTKLSM 191 (222)
Q Consensus 153 ~~L~i~GLMt-i~p~~~d~~---~~F~~l~~l~~~~~-~~~LSm 191 (222)
.++++.||.. ++....|+. .....+.++.+++. +..|..
T Consensus 168 ~~l~~~GlhfH~GS~~~~~~~~~~~~~~~~~~~~~~~~~~~ldi 211 (368)
T cd06840 168 AGIIVIGLHAHSGSGVEDTDHWARHGDYLASLARHFPAVRILNV 211 (368)
T ss_pred CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 79938999986787778989999999999999973655234764
No 43
>pfam02784 Orn_Arg_deC_N Pyridoxal-dependent decarboxylase, pyridoxal binding domain. These pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates This domain has a TIM barrel fold.
Probab=97.51 E-value=0.0016 Score=45.01 Aligned_cols=164 Identities=12% Similarity=0.027 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHHHHH-HCCCCCCCCCCCHHHHHH-HHCCCCCCCCCEEEECCCCC
Q ss_conf 9999999999999819896441899871899999999999-729810001210001111-00000125873023024432
Q gi|254780801|r 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVAL-SCGQVIFAENKLQEAKKK-WIPLRKEWDVQLRFIGSLQS 84 (222)
Q Consensus 7 l~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~~~~-~~G~~~fGENrvQE~~~K-~~~l~~~~~i~wHfIG~LQs 84 (222)
++.|+++....-.+. .+.+++.=..|.-|...|..+. +.|.- |==.-.-|+..- ...++ .-+-.|-|+..+
T Consensus 2 ~~~i~~~~~~~~~~~---~p~~~~~YAvKaN~~~~il~~l~~~G~g-~dv~S~~El~~al~~g~~---~~~I~~~g~~k~ 74 (245)
T pfam02784 2 LGRIIERAHALWQAF---LPRIQPFYAVKANSDPAVLRLLAELGLG-FDCASKGELERVLAAGVP---PERIIFANPCKS 74 (245)
T ss_pred HHHHHHHHHHHHHHH---CCCCEEEEEEEECCCHHHHHHHHHCCCC-EEEECHHHHHHHHHCCCC---HHHEEEECCCCC
T ss_conf 689999999999984---8997799885018889999999982992-999899999999986989---578898144354
Q ss_pred C-HHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECC-----------CCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 0-01320111000012222200134433333311430368897004-----------66563465700012223443104
Q gi|254780801|r 85 N-KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG-----------YEIQKSGIMPNQTKDFVILCRQK 152 (222)
Q Consensus 85 N-Kvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~-----------~e~~K~G~~p~el~~l~~~i~~~ 152 (222)
. -++.++..=-..-++||....+.|.+.+.+ .+++|-||.+ +-.+|+|++++++.++++.+.+.
T Consensus 75 ~~~i~~a~~~gv~~i~vDs~~el~~i~~~~~~----~~i~lRvnp~~~~~~~~~~~~g~~sKFGi~~~~~~~~~~~~~~~ 150 (245)
T pfam02784 75 RSELRYALEHGVVCVTVDNVEELEKLARLAPE----ARLLLRVKPDVDAHAHCYLSTGQDSKFGADLEEAEALLKAAKEL 150 (245)
T ss_pred HHHHHHHHHHCCCCEEECCHHHHHHHHHHCCC----CCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 68999999827761442799999999985753----77899994067766554444688777689999999999999867
Q ss_pred CCCCHHHHEE-CCCCCCCCHH---HHHHHHHHHH
Q ss_conf 3110011101-1543345205---8999999988
Q gi|254780801|r 153 YQLNVEGLMC-IPPAMGNPKP---HFYLLSEIAR 182 (222)
Q Consensus 153 ~~L~i~GLMt-i~p~~~d~~~---~F~~l~~l~~ 182 (222)
++++.||-. ++....|+.. ....+.++.+
T Consensus 151 -~~~~~GlH~H~GSq~~~~~~~~~~~~~~~~~~~ 183 (245)
T pfam02784 151 -GLNVVGVHFHVGSGCTDAEAFVKAARDARNVFD 183 (245)
T ss_pred -CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf -997547556536578998999999999999999
No 44
>cd00622 PLPDE_III_ODC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase. This subfamily is composed mainly of eukaryotic ornithine decarboxylases (ODC, EC 4.1.1.17) and ODC-like enzymes from prokaryotes represented by Vibrio vulnificus LysineOrnithine decarboxylase. These are fold type III PLP-dependent enzymes that differ from most bacterial ODCs which are fold type I PLP-dependent enzymes. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. Members of this subfamily contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity. Also members of this su
Probab=97.50 E-value=0.0018 Score=44.71 Aligned_cols=172 Identities=16% Similarity=0.137 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHHHHH-HCCCCCCCCCCCHHHHHHH-HCCCCCCCCCEEEECCCCC-
Q ss_conf 999999999999819896441899871899999999999-7298100012100011110-0000125873023024432-
Q gi|254780801|r 8 QVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVAL-SCGQVIFAENKLQEAKKKW-IPLRKEWDVQLRFIGSLQS- 84 (222)
Q Consensus 8 ~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~~~~-~~G~~~fGENrvQE~~~K~-~~l~~~~~i~wHfIG~LQs- 84 (222)
+.|++++++-.... +.+++.=..|..|...|...+ +.|. .|==.-..|+..-. ..++ .=+-.|-|+.-+
T Consensus 10 ~~i~~~~~~l~~af----p~~~i~YA~KaN~~~~vl~~l~~~G~-g~dv~S~~El~~al~~G~~---~~~Iif~gp~K~~ 81 (362)
T cd00622 10 GDVVRKYRRWKKAL----PRVRPFYAVKCNPDPAVLRTLAALGA-GFDCASKGEIELVLGLGVS---PERIIFANPCKSI 81 (362)
T ss_pred HHHHHHHHHHHHHC----CCCEEEEEECCCCCHHHHHHHHHCCC-EEEEECHHHHHHHHHCCCC---HHHEEECCCCCCH
T ss_conf 99999999999868----99879999665898999999997399-1998299999999984998---7895845887887
Q ss_pred CHHHHHCCCC-HHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCC------CCCCCCCCCHHHHHHHHHHCCCCCCH
Q ss_conf 0013201110-0001222220013443333331143036889700466------56346570001222344310431100
Q gi|254780801|r 85 NKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------IQKSGIMPNQTKDFVILCRQKYQLNV 157 (222)
Q Consensus 85 NKvk~i~~~~-~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e------~~K~G~~p~el~~l~~~i~~~~~L~i 157 (222)
.-++.+++.- .+| ++||+..+++|.+.+. ..+|+|-||.+.. .+|+|+.++++.++++.+++. +|++
T Consensus 82 ~el~~a~~~gv~~i-~vDS~~EL~~i~~~~~----~~~i~lRv~~~~~~~~~~~~~KFGi~~~~~~~~l~~~~~~-~l~~ 155 (362)
T cd00622 82 SDIRYAAELGVRLF-TFDSEDELEKIAKHAP----GAKLLLRIATDDSGALCPLSRKFGADPEEARELLRRAKEL-GLNV 155 (362)
T ss_pred HHHHHHHHCCCCEE-EECCHHHHHHHHHHCC----CCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCCE
T ss_conf 99999997499667-7278999999998677----7826999866999873357775799999999999999862-9956
Q ss_pred HHHEE-CCCCCCCCHH---HHHHHHHHHHH---C--CCCEECCCC
Q ss_conf 11101-1543345205---89999999887---5--894722477
Q gi|254780801|r 158 EGLMC-IPPAMGNPKP---HFYLLSEIARE---C--KLTKLSMGM 193 (222)
Q Consensus 158 ~GLMt-i~p~~~d~~~---~F~~l~~l~~~---~--~~~~LSmGM 193 (222)
.||.. ++....|+.. ....+.++.+. + .+..+.+|=
T Consensus 156 ~GlH~H~GS~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~idiGG 200 (362)
T cd00622 156 VGVSFHVGSQCTDPSAYVDAIADAREVFDEAAELGFKLKLLDIGG 200 (362)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECC
T ss_conf 889987687768979999999999999999997599976798379
No 45
>PRK11165 diaminopimelate decarboxylase; Provisional
Probab=97.15 E-value=0.0036 Score=42.64 Aligned_cols=131 Identities=15% Similarity=0.116 Sum_probs=77.1
Q ss_pred EEEECCCCCHHHHHHH-HHCCCCCCCCCCCHHHHHH-HHCCCC-CCCCCEEEECCCCCCH-HHHHCCCCHHCCCCCCCCH
Q ss_conf 9987189999999999-9729810001210001111-000001-2587302302443200-1320111000012222200
Q gi|254780801|r 30 LVAVSKMVDSKKIRVA-LSCGQVIFAENKLQEAKKK-WIPLRK-EWDVQLRFIGSLQSNK-VSEIVSLFDVIETVSREKT 105 (222)
Q Consensus 30 LiaVtK~~~~e~I~~~-~~~G~~~fGENrvQE~~~K-~~~l~~-~~~i~wHfIG~LQsNK-vk~i~~~~~~Ihsvds~~~ 105 (222)
+-=..|..|.-.|..+ .+.|.. |==.-..|+..- ...++. ...-+--|-|+.-+.. ++.++..--.| .+||+..
T Consensus 41 i~YAvKAN~~~~il~~l~~~G~g-~DvaS~gEl~~al~aG~~~~~~~~~Iif~g~~k~~~~l~~a~~~gv~i-n~ds~~e 118 (412)
T PRK11165 41 IRFAQKACSNIHILRLMREQGVK-VDAVSLGEIERALAAGYSPGTEPDDIVFTADLIDRATLARVSELKIPV-NAGSIDM 118 (412)
T ss_pred EEEEHHHCCCHHHHHHHHHCCCC-EEEECHHHHHHHHHCCCCCCCCCCCEEECCCCCCHHHHHHHHHCCCEE-ECCCHHH
T ss_conf 48862648889999999984996-688799999999975999899855238778657999999999849978-2287899
Q ss_pred HHHHHHHHHHHCCCEEEEEEEE------------CCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEE-CCCCC
Q ss_conf 1344333333114303688970------------04665634657000122234431043110011101-15433
Q gi|254780801|r 106 ASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC-IPPAM 167 (222)
Q Consensus 106 a~~L~~~~~~~~~~~~vliQVN------------~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMt-i~p~~ 167 (222)
.++|.+.+ +..+|+|.|| +++..+|+|+.++++.++++.+++. +|++.||-+ +|+.-
T Consensus 119 L~~i~~~~----~~~~V~lRiNP~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~~~~~~-~l~~~GlH~HiGS~i 188 (412)
T PRK11165 119 LDQLGQVS----PGHRVWLRINPGFGHGHSQKTNTGGENSKHGIWHEDLPAALAVIQRY-GLKLVGIHMHIGSGV 188 (412)
T ss_pred HHHHHHHC----CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCCEEEEEEECCCCC
T ss_conf 99998646----68846999568868776643346887555678999999999999867-997898889538887
No 46
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=96.89 E-value=0.015 Score=38.52 Aligned_cols=153 Identities=17% Similarity=0.205 Sum_probs=90.0
Q ss_pred EEEECCCCCHHHHH-HHHHC--CCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCH-HHHHCCCCHHCCCCCCCCH
Q ss_conf 99871899999999-99972--98100012100011110000012587302302443200-1320111000012222200
Q gi|254780801|r 30 LVAVSKMVDSKKIR-VALSC--GQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK-VSEIVSLFDVIETVSREKT 105 (222)
Q Consensus 30 LiaVtK~~~~e~I~-~~~~~--G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQsNK-vk~i~~~~~~Ihsvds~~~ 105 (222)
--|| |--|...|. .+.++ |.... -..|+..-...++.-.+=+.=|-|+--+.+ ++++.+.--.+ ++||...
T Consensus 533 fYAV-KaN~~P~IL~~La~lG~GFDca---S~gEl~~vL~~~~Gv~p~rIifa~~~K~~~ei~~A~~~gV~~-t~Ds~~E 607 (865)
T PRK08961 533 YYAI-KANPHPAILRTLEEEGFGLECV---SIGELRRVFKALPELSPRRVLFTPSFAPRAEYEAAFALGVTV-TVDNVEA 607 (865)
T ss_pred EEEE-ECCCCHHHHHHHHHHCCCCEEC---CHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHCCCEE-EECCHHH
T ss_conf 8998-5089989999999838983666---999999999602795933189799999999999999779989-9838999
Q ss_pred HHHHHHHHHHHCCCEEEEEEEE------------CCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHH-EECCCCCCCCH-
Q ss_conf 1344333333114303688970------------046656346570001222344310431100111-01154334520-
Q gi|254780801|r 106 ASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL-MCIPPAMGNPK- 171 (222)
Q Consensus 106 a~~L~~~~~~~~~~~~vliQVN------------~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GL-Mti~p~~~d~~- 171 (222)
.+++.+.... .+++|-|| +++.++|+|+.++++.++++..++ .+|++.|+ +-+|..-.|+.
T Consensus 608 L~ki~~~~~~----a~v~LRInP~~~~g~h~~istGg~~sKFGi~~~~~~~ll~~Ak~-~gL~vvGihfHVGSg~~d~~~ 682 (865)
T PRK08961 608 LRNWPEVFRG----REVWLRIDLGHGDGHHEKVRTGGKESKFGLSSTRIDEFVDLAKT-LGITVTGLHAHLGSGVETGDH 682 (865)
T ss_pred HHHHHHHCCC----CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCCEEEEEEECCCCCCCHHH
T ss_conf 9999987789----85999975899988777513799988889889999999999987-699679999742778899899
Q ss_pred --HHHHHHHHHHHHCC-CCEECCC
Q ss_conf --58999999988758-9472247
Q gi|254780801|r 172 --PHFYLLSEIARECK-LTKLSMG 192 (222)
Q Consensus 172 --~~F~~l~~l~~~~~-~~~LSmG 192 (222)
..+..+.+++++++ +..|.+|
T Consensus 683 ~~~a~~~~~~la~~~~~l~~LDiG 706 (865)
T PRK08961 683 WRRMYDELAGFARRIGTVETIDIG 706 (865)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 999999999999852997099858
No 47
>cd06836 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases. This subfamily contains uncharacterized proteins with similarity to ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarbo
Probab=96.87 E-value=0.027 Score=36.77 Aligned_cols=176 Identities=13% Similarity=0.078 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHHH-HHHCCCCCCCCCCCHHHHHH-HHCCCCCCCCCEEEECCCCC
Q ss_conf 99999999999998198964418998718999999999-99729810001210001111-00000125873023024432
Q gi|254780801|r 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRV-ALSCGQVIFAENKLQEAKKK-WIPLRKEWDVQLRFIGSLQS 84 (222)
Q Consensus 7 l~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~~-~~~~G~~~fGENrvQE~~~K-~~~l~~~~~i~wHfIG~LQs 84 (222)
++.|+++++.....- |..+.+.=..|.-|...|.. +.+.|. .|==.-.+|+..- ...++ .=+--|-|+.-+
T Consensus 10 ~~~i~~~~~~~~~af---p~~~~~~YAvKaN~~p~il~~l~~~G~-g~DvaS~~El~~al~~G~~---~~~Ii~~gp~K~ 82 (379)
T cd06836 10 LDGFRALVARLTAAF---PAPVLHTFAVKANPLVPVLRLLAEAGA-GAEVASPGELELALAAGFP---PERIVFDSPAKT 82 (379)
T ss_pred HHHHHHHHHHHHHHC---CCCCEEEEEEECCCCHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCC---HHHEEECCCCCC
T ss_conf 999999999999858---998618999833899999999998499-7897399999999985999---899898899899
Q ss_pred -CHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHH-CCCEEEEEEEEC------------CCCCCCCCCCCCH--HHHHHHH
Q ss_conf -00132011100001222220013443333331-143036889700------------4665634657000--1222344
Q gi|254780801|r 85 -NKVSEIVSLFDVIETVSREKTASLLSLEMIKQ-SRFLPVYIQVNT------------GYEIQKSGIMPNQ--TKDFVIL 148 (222)
Q Consensus 85 -NKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~-~~~~~vliQVN~------------~~e~~K~G~~p~e--l~~l~~~ 148 (222)
.-++.++++=-.| ++||+..+++|++.+.+. .....|.|-||. +...+|+|+..++ ...++..
T Consensus 83 ~~~l~~A~~~Gv~i-~vDs~~El~~i~~l~~~~~~~~~~i~lRinp~~~~~~~~~~~~~~~~sKFG~~~~~~~~~~~~~~ 161 (379)
T cd06836 83 RAELREALELGVAI-NIDNFQELERIDALVAEFKEASSRIGLRVNPQVGAGKIGALSTATATSKFGVALEDGARDEIIDA 161 (379)
T ss_pred HHHHHHHHHCCCCC-CCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99999999739920-34898999999999986299752589997168776675434468998985888147789999999
Q ss_pred HHCCCCCCHHHHEE-CCCCCCCCH-------HHHHHHHHHHHHC---CCCEECCC
Q ss_conf 31043110011101-154334520-------5899999998875---89472247
Q gi|254780801|r 149 CRQKYQLNVEGLMC-IPPAMGNPK-------PHFYLLSEIAREC---KLTKLSMG 192 (222)
Q Consensus 149 i~~~~~L~i~GLMt-i~p~~~d~~-------~~F~~l~~l~~~~---~~~~LSmG 192 (222)
.. .++.+.||-. +|...-++. ..+....++.... ++..|.+|
T Consensus 162 ~~--~~~~l~GlhfHvGSq~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ldiG 214 (379)
T cd06836 162 FA--RRPWLNGLHVHVGSQGCELSLLAEGIRRVVDLAEEINRRVGRRQITRIDIG 214 (379)
T ss_pred HH--CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECC
T ss_conf 82--679700689877888889899999999999999999886087763265037
No 48
>cd06829 PLPDE_III_CANSDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Carboxynorspermidine Decarboxylase. Carboxynorspermidine decarboxylase (CANSDC) catalyzes the decarboxylation of carboxynorspermidine, the last step in the biosynthesis of norspermidine. It is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Based on this similarity, CANSDC may require homodimer formation and the presence of the PLP cofactor for its catalytic activity.
Probab=96.85 E-value=0.027 Score=36.79 Aligned_cols=111 Identities=12% Similarity=0.077 Sum_probs=66.3
Q ss_pred HHCEEEEECCCCCHHHHHHHHHC---CCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCC-CHHHHHCCCCHHCCCCC
Q ss_conf 44189987189999999999972---981000121000111100000125873023024432-00132011100001222
Q gi|254780801|r 26 DSVSLVAVSKMVDSKKIRVALSC---GQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS-NKVSEIVSLFDVIETVS 101 (222)
Q Consensus 26 ~~v~LiaVtK~~~~e~I~~~~~~---G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQs-NKvk~i~~~~~~Ihsvd 101 (222)
..+++.=..|..|...|..++.- |...-+ ..|+.-....+++ + -|+-++--+ ..+..+++....| ++|
T Consensus 25 ~~~~i~YA~KAN~~~~il~~l~~~g~G~d~~S---~~E~~la~~~~~~--~--~~~~~~~~~~~el~~~~~~~~~i-~~d 96 (346)
T cd06829 25 SGAKILLALKAFSMWSVFPLIREYLDGTTASS---LFEARLGREEFGG--E--VHTYSPAYRDDEIDEILRLADHI-IFN 96 (346)
T ss_pred CCCEEEEEEHHCCCHHHHHHHHHHCCEEEECC---HHHHHHHHHHCCC--C--CEEECCCCCHHHHHHHHHCCCEE-EEC
T ss_conf 89879998824288899999997499699749---9999997410687--6--46756879989999999729989-988
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEEEEECC------------CCCCCCCCCCCHHHHHH
Q ss_conf 2200134433333311430368897004------------66563465700012223
Q gi|254780801|r 102 REKTASLLSLEMIKQSRFLPVYIQVNTG------------YEIQKSGIMPNQTKDFV 146 (222)
Q Consensus 102 s~~~a~~L~~~~~~~~~~~~vliQVN~~------------~e~~K~G~~p~el~~l~ 146 (222)
|+...++|+..+.. ...+|.|-||.+ +..+|+|+.++++.+.+
T Consensus 97 s~~El~~i~~~~~~--~~~~V~lRINP~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~ 151 (346)
T cd06829 97 SLSQLERFKDRAKA--AGISVGLRINPEYSEVETDLYDPCAPGSRLGVTLDELEEED 151 (346)
T ss_pred CHHHHHHHHHHHCC--CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 99999999987405--89749999858987776766057898440378799987877
No 49
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=96.70 E-value=0.02 Score=37.68 Aligned_cols=173 Identities=10% Similarity=0.083 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHHH-HHHCCCCCCCCCCCHHHHHH-HHCCCCCCCCCEEEECCCCC
Q ss_conf 99999999999998198964418998718999999999-99729810001210001111-00000125873023024432
Q gi|254780801|r 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRV-ALSCGQVIFAENKLQEAKKK-WIPLRKEWDVQLRFIGSLQS 84 (222)
Q Consensus 7 l~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~~-~~~~G~~~fGENrvQE~~~K-~~~l~~~~~i~wHfIG~LQs 84 (222)
+..|++++++-...- ..|++.=..|.-|...|.. +.++|. -|==--..|+..- ...++ .=+-.|=|+..+
T Consensus 20 ~~~i~~~~~~~~~~l----p~v~~~YAvKaN~~~~il~~L~~~G~-g~DvaS~gEl~~al~aG~~---p~~Iif~gp~Kt 91 (394)
T cd06831 20 LGKIVKKHSQWQTVM----AQIKPFYTVRCNSTPAVLEILAALGT-GFACSSKNEMALVQELGVS---PENIIYTNPCKQ 91 (394)
T ss_pred HHHHHHHHHHHHHHC----CCCCEEEEECCCCCHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCC---HHHEEECCCCCC
T ss_conf 999999999999868----99857878624998999999997499-8898699999999986998---799797799999
Q ss_pred C-HHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCC------CCCCCCCCCCHHHHHHHHHHCCCCCCH
Q ss_conf 0-013201110000122222001344333333114303688970046------656346570001222344310431100
Q gi|254780801|r 85 N-KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGY------EIQKSGIMPNQTKDFVILCRQKYQLNV 157 (222)
Q Consensus 85 N-Kvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~------e~~K~G~~p~el~~l~~~i~~~~~L~i 157 (222)
. -++.+++.==-+-++||....++|.+.. ...++++.||+.. -.+|+|++++++.++++..+++ ++++
T Consensus 92 ~~ei~~A~~~GV~~~~~Ds~~EL~ki~r~~----~~~~v~lri~~~~~~~~~~~~~KFG~~~~~~~~ll~~~~~~-~l~~ 166 (394)
T cd06831 92 ASQIKYAAKVGVNIMTCDNEIELKKIARNH----PNAKLLLHIATEDNIGGEEMNMKFGTTLKNCRHLLECAKEL-DVQI 166 (394)
T ss_pred HHHHHHHHHCCCCEEECCCHHHHHHHHHHC----CCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEE
T ss_conf 999999998599778537689999999878----99960788734777777756765456799999999999864-9869
Q ss_pred HHH-EECCCCCCCCHHH---HHH---HHHHHHHCC--CCEECCC
Q ss_conf 111-0115433452058---999---999988758--9472247
Q gi|254780801|r 158 EGL-MCIPPAMGNPKPH---FYL---LSEIARECK--LTKLSMG 192 (222)
Q Consensus 158 ~GL-Mti~p~~~d~~~~---F~~---l~~l~~~~~--~~~LSmG 192 (222)
.|| +-++....++... ... +.++.++++ +..|.+|
T Consensus 167 ~Glh~HvGSq~~~~~~~~~a~~~~~~v~dl~~~~g~~~~~lDiG 210 (394)
T cd06831 167 VGVKFHVSSSCKEYQTYVHALSDARCVFDMAEEFGFKMNMLDIG 210 (394)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf 99853315776884999999999999999999719997489878
No 50
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=94.35 E-value=0.15 Score=31.76 Aligned_cols=156 Identities=14% Similarity=0.171 Sum_probs=85.1
Q ss_pred CCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHCCC-CHH--CCCCCCCCHHHHHHHHHHHHCCCEEEEEE-E-
Q ss_conf 000121000111100000125873023024432001320111-000--01222220013443333331143036889-7-
Q gi|254780801|r 52 IFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSL-FDV--IETVSREKTASLLSLEMIKQSRFLPVYIQ-V- 126 (222)
Q Consensus 52 ~fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQsNKvk~i~~~-~~~--Ihsvds~~~a~~L~~~~~~~~~~~~vliQ-V- 126 (222)
.+|..-+.++.++ .++=..|.++|=||+-=.+-++.+.++ +|+ ||+..-....+.+.+.+.+.+..+.++-= +
T Consensus 40 ~~G~~~i~~l~~~--g~~iFlDlKl~DIpnTv~~~~~~i~~~g~d~vtvH~~~G~~~l~a~~~~~~~~~~~~kll~Vt~L 117 (231)
T PRK00230 40 AGGPQFVRELKQR--GFKVFLDLKLHDIPNTVAKAVRAAAKLGVDMVTVHASGGARMMAAAREGLEPGGSRPLLIAVTVL 117 (231)
T ss_pred HCCHHHHHHHHHC--CCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEEE
T ss_conf 4189999999977--99689872022654589999999985799899982578599999999988714898759999962
Q ss_pred -ECCC-CCCCCCCCCCHHHHHHHHHHC-CCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHCC--CCEECCCC------CH
Q ss_conf -0046-656346570001222344310-4311001110115433452058999999988758--94722477------73
Q gi|254780801|r 127 -NTGY-EIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK--LTKLSMGM------TR 195 (222)
Q Consensus 127 -N~~~-e~~K~G~~p~el~~l~~~i~~-~~~L~i~GLMti~p~~~d~~~~F~~l~~l~~~~~--~~~LSmGM------S~ 195 (222)
..+. +-+..|+. ..+.+.+..... .....+.|+-| +| .+...+++.++ +-.++=|. ++
T Consensus 118 TS~~~~~l~~~~~~-~~~~~~v~~~a~~a~~~g~dGiVc-s~---------~e~~~ir~~~~~~~~ivTPGIr~~~~~~~ 186 (231)
T PRK00230 118 TSMDEEDLAELGIN-LSLEEQVLRLAKLAQEAGLDGVVC-SA---------QEAAALREATGPDFLLVTPGIRPAGSDAG 186 (231)
T ss_pred CCCCHHHHHHCCCC-CCHHHHHHHHHHHHHHHCCCEEEC-CH---------HHHHHHHHHCCCCCEEECCCCCCCCCCCC
T ss_conf 36898899866757-899999999999999969984863-88---------89999986459871898677277888756
Q ss_pred H------HHHHHHHCCCEEEECHHHCCCCCC
Q ss_conf 4------899998089889971132389999
Q gi|254780801|r 196 D------FELAIASGATSVRIGSGIFGERPC 220 (222)
Q Consensus 196 D------~~~Ai~~Gst~vRiGs~iFG~R~~ 220 (222)
| .+.|++.||+++=||+.|..+.+.
T Consensus 187 DQ~rv~TP~~Ai~~GAD~iVVGR~I~~s~dP 217 (231)
T PRK00230 187 DQKRVMTPAQAIAAGSDYIVVGRPITQAEDP 217 (231)
T ss_pred CCCCCCCHHHHHHCCCCEEEECCCCCCCCCH
T ss_conf 7465689999998799999989845689999
No 51
>KOG0622 consensus
Probab=92.53 E-value=0.28 Score=29.89 Aligned_cols=147 Identities=11% Similarity=0.060 Sum_probs=92.0
Q ss_pred HCEEEEECCCCCHHHHHH-HHHCCCCCCCCCC--CHHHHHHHHCCCCCCCCCEEEECCCCC-CHHHHHCCCCHHCCCCCC
Q ss_conf 418998718999999999-9972981000121--000111100000125873023024432-001320111000012222
Q gi|254780801|r 27 SVSLVAVSKMVDSKKIRV-ALSCGQVIFAENK--LQEAKKKWIPLRKEWDVQLRFIGSLQS-NKVSEIVSLFDVIETVSR 102 (222)
Q Consensus 27 ~v~LiaVtK~~~~e~I~~-~~~~G~~~fGENr--vQE~~~K~~~l~~~~~i~wHfIG~LQs-NKvk~i~~~~~~Ihsvds 102 (222)
.|+.-=..|--+.-.|.. +-++|.--+=-+. .+.+.. ..+ .+-+-=|.+|.-+ --+|+++.+=-.+-|+|+
T Consensus 79 rV~PfYAVKCN~dp~vl~~La~lG~gfdcaSk~E~~lvl~--~gv---~P~riIyanpcK~~s~IkyAa~~gV~~~tfDn 153 (448)
T KOG0622 79 RVRPFYAVKCNSDPKVLRLLASLGCGFDCASKNELDLVLS--LGV---SPERIIYANPCKQVSQIKYAAKHGVSVMTFDN 153 (448)
T ss_pred CCCCCEEEEECCCHHHHHHHHHCCCCCEECCHHHHHHHHH--CCC---CHHHEEECCCCCCHHHHHHHHHCCCEEEEECC
T ss_conf 6787616873797799999997086601037179999986--698---85666862787519999999975970786258
Q ss_pred CCHHHHHHHHHHHHCCCEEEEEEEECCCC------CCCCCCCCCHHHHHHHHHHCCCCCCHHHHEE-CCCCCCCCH---H
Q ss_conf 20013443333331143036889700466------5634657000122234431043110011101-154334520---5
Q gi|254780801|r 103 EKTASLLSLEMIKQSRFLPVYIQVNTGYE------IQKSGIMPNQTKDFVILCRQKYQLNVEGLMC-IPPAMGNPK---P 172 (222)
Q Consensus 103 ~~~a~~L~~~~~~~~~~~~vliQVN~~~e------~~K~G~~p~el~~l~~~i~~~~~L~i~GLMt-i~p~~~d~~---~ 172 (222)
.....++.+. ....+++|.|+++.. ..|+|++++++..+++..+++ +|++.|.=. +|+.-.|+. .
T Consensus 154 e~el~kv~~~----hP~a~llLrIatdds~a~~~l~~KFG~~~~~~~~lLd~ak~l-~lnvvGvsfHvGSgc~d~~~y~~ 228 (448)
T KOG0622 154 EEELEKVAKS----HPNANLLLRIATDDSTATCRLNLKFGCSLDNCRHLLDMAKEL-ELNVVGVSFHVGSGCTDLQAYRD 228 (448)
T ss_pred HHHHHHHHHH----CCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEEEEEECCCCCCHHHHHH
T ss_conf 9999999974----997338999736887455556675687778999999999871-86588899872588787899999
Q ss_pred HHHHHHHHHHH
Q ss_conf 89999999887
Q gi|254780801|r 173 HFYLLSEIARE 183 (222)
Q Consensus 173 ~F~~l~~l~~~ 183 (222)
.-...|.+++.
T Consensus 229 Ai~dAr~vfd~ 239 (448)
T KOG0622 229 AISDARNVFDM 239 (448)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 52
>COG1166 SpeA Arginine decarboxylase (spermidine biosynthesis) [Amino acid transport and metabolism]
Probab=91.00 E-value=1.1 Score=26.05 Aligned_cols=169 Identities=14% Similarity=0.116 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHCEEE-EECCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCC---C-------
Q ss_conf 89999999999999999819896441899-871899999999999729810001210001111000001---2-------
Q gi|254780801|r 3 LGNKLQVFKQKIENSAILAKRPKDSVSLV-AVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK---E------- 71 (222)
Q Consensus 3 i~~nl~~i~~~I~~a~~~~gR~~~~v~Li-aVtK~~~~e~I~~~~~~G~~~fGENrvQE~~~K~~~l~~---~------- 71 (222)
|.++++++....+.|.++++-+ +.-++| ++-=+|--.-|..+...| -|.|+-=||-.|.+-+.. .
T Consensus 90 L~~Rl~~ln~aF~~Ai~ey~Y~-g~Y~~VyPIKvNQ~r~vVe~Lv~~g---~~~~~GLEAGSK~ELm~vLA~~~~~~~~I 165 (652)
T COG1166 90 LQHRLRSLNAAFARAIEEYGYP-GGYFAVYPIKVNQHRRVVESLVASG---KGYPLGLEAGSKAELMAVLAHAGNPGSLI 165 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHCCC-CCEEEEEEEEECCHHHHHHHHHHCC---CCCCCCCCCCCHHHHHHHHHHCCCCCCEE
T ss_conf 9999999999999999980889-8605898766554188999998636---89877666788799999998338999717
Q ss_pred -----C---CCCEEEECCCCCCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEE-----------CCCCC
Q ss_conf -----5---8730230244320013201110000122222001344333333114303688970-----------04665
Q gi|254780801|r 72 -----W---DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN-----------TGYEI 132 (222)
Q Consensus 72 -----~---~i~wHfIG~LQsNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN-----------~~~e~ 132 (222)
+ =|+.-|||.==- -+.+= ++.-++..+.+-.++++.+.++.+=+.+. .+||.
T Consensus 166 vCNGyKDrEyI~lAlig~kLG------h~v~i---vIEklsEl~~Vl~eA~~lgvkP~lGvR~RL~sqGsGkW~~SgG~k 236 (652)
T COG1166 166 VCNGYKDREYIRLALIGEKLG------HKVYI---VIEKLSELDLVLEEAKQLGVKPRLGVRARLASQGSGKWQSSGGEK 236 (652)
T ss_pred EECCCCCHHHHHHHHHHHHHC------CCEEE---EEECHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCH
T ss_conf 845746099999999999827------95499---992267999999999973999763368886235567500046831
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCCHHHHEE--CCCCCCCCHH----------HHHHHHHHHHHC
Q ss_conf 634657000122234431043110011101--1543345205----------899999998875
Q gi|254780801|r 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMC--IPPAMGNPKP----------HFYLLSEIAREC 184 (222)
Q Consensus 133 ~K~G~~p~el~~l~~~i~~~~~L~i~GLMt--i~p~~~d~~~----------~F~~l~~l~~~~ 184 (222)
+|+|.+..++.++++.+++..-|.---+|- ||+.-.+.++ .|..|++|--++
T Consensus 237 sKFGLsa~qvL~~v~~Lre~~~Ld~l~llHFHlGSQisnI~~ik~~~rEA~r~YvEL~klGa~i 300 (652)
T COG1166 237 SKFGLSATQVLQVVERLREANLLDSLQLLHFHLGSQISNIRDIKTGVREAARFYVELRKLGANI 300 (652)
T ss_pred HCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 0148888999999999876265776678764100013456999999999999999999827886
No 53
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=89.48 E-value=1 Score=26.12 Aligned_cols=68 Identities=18% Similarity=0.342 Sum_probs=46.2
Q ss_pred CCCCHHHHEECCCCCC-CC--HHHHHHHHHHHHH---CCCC---EECCCCCHH-HHHHHHHCCCEEEECHHHCCCCCC
Q ss_conf 3110011101154334-52--0589999999887---5894---722477734-899998089889971132389999
Q gi|254780801|r 153 YQLNVEGLMCIPPAMG-NP--KPHFYLLSEIARE---CKLT---KLSMGMTRD-FELAIASGATSVRIGSGIFGERPC 220 (222)
Q Consensus 153 ~~L~i~GLMti~p~~~-d~--~~~F~~l~~l~~~---~~~~---~LSmGMS~D-~~~Ai~~Gst~vRiGs~iFG~R~~ 220 (222)
+.+...-+||+.|-.. .+ ...+.+.+++++- .+.. +.-=|.+.+ ....++.|++.+=.||+||+.-++
T Consensus 126 ~~~D~vliMtV~PGf~GQ~f~~~~~~ki~~l~~~~~~~~~~~~I~vDGGI~~~~i~~l~~~Gad~~V~GS~iF~~~d~ 203 (211)
T cd00429 126 DEVDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGINLETIPLLAEAGADVLVAGSALFGSDDY 203 (211)
T ss_pred HHHCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCH
T ss_conf 751522798746887887545679999999999998649985999967859899999998599999979377589999
No 54
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=88.47 E-value=0.67 Score=27.38 Aligned_cols=170 Identities=15% Similarity=0.254 Sum_probs=88.4
Q ss_pred CEEEEECCCCCHHHHHHHHHCCCCC---------------CCCCCCHHHHHHHHCCCCCCCCCEE-EECCCCCCHHHHHC
Q ss_conf 1899871899999999999729810---------------0012100011110000012587302-30244320013201
Q gi|254780801|r 28 VSLVAVSKMVDSKKIRVALSCGQVI---------------FAENKLQEAKKKWIPLRKEWDVQLR-FIGSLQSNKVSEIV 91 (222)
Q Consensus 28 v~LiaVtK~~~~e~I~~~~~~G~~~---------------fGENrvQE~~~K~~~l~~~~~i~wH-fIG~LQsNKvk~i~ 91 (222)
+.|++.-..+--++++.+.++|.+. ||=-.++.++. ...+ .+.-| ||-+- ..-+...+
T Consensus 8 pSILsaD~~~l~~el~~~~~agad~iH~DVMDghFVPNiTfGp~~v~~l~~-~t~~----p~DvHLMV~~p-~~~i~~fa 81 (220)
T COG0036 8 PSILSADFARLGEELKALEAAGADLIHIDVMDGHFVPNITFGPPVVKALRK-ITDL----PLDVHLMVENP-DRYIEAFA 81 (220)
T ss_pred EEHHHCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHH-CCCC----CEEEEEECCCH-HHHHHHHH
T ss_conf 156427776799999999976998799964578767873348999998863-6897----35899732898-99999999
Q ss_pred CC-CHH--CCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCC--CCHHHHHHHHHHCCCCCCHHHHEECCCC
Q ss_conf 11-000--012222200134433333311430368897004665634657--0001222344310431100111011543
Q gi|254780801|r 92 SL-FDV--IETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM--PNQTKDFVILCRQKYQLNVEGLMCIPPA 166 (222)
Q Consensus 92 ~~-~~~--Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~--p~el~~l~~~i~~~~~L~i~GLMti~p~ 166 (222)
.. +|+ +|.=+...+.+.|+. ..+.+ -|.|+. |+-=.+.++.+ ++.+.+.=+||+.|-
T Consensus 82 ~agad~It~H~E~~~~~~r~i~~-Ik~~G---------------~kaGv~lnP~Tp~~~i~~~--l~~vD~VllMsVnPG 143 (220)
T COG0036 82 KAGADIITFHAEATEHIHRTIQL-IKELG---------------VKAGLVLNPATPLEALEPV--LDDVDLVLLMSVNPG 143 (220)
T ss_pred HHCCCEEEEEECCCCCHHHHHHH-HHHCC---------------CEEEEEECCCCCHHHHHHH--HHHCCEEEEEEECCC
T ss_conf 81999899971277689999999-99759---------------8577997899977899989--865789999857799
Q ss_pred CCC---CHHHHHHHHHHHHHCC-----CCEECCCCCHH-HHHHHHHCCCEEEECHHHCCCCCCC
Q ss_conf 345---2058999999988758-----94722477734-8999980898899711323899999
Q gi|254780801|r 167 MGN---PKPHFYLLSEIARECK-----LTKLSMGMTRD-FELAIASGATSVRIGSGIFGERPCQ 221 (222)
Q Consensus 167 ~~d---~~~~F~~l~~l~~~~~-----~~~LSmGMS~D-~~~Ai~~Gst~vRiGs~iFG~R~~~ 221 (222)
..- ....+.+++++++-+. .-|.-=|.+.+ .+.+.+.|++++=.||++|+...|.
T Consensus 144 fgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~~~t~~~~~~AGad~~VaGSalF~~~d~~ 207 (220)
T COG0036 144 FGGQKFIPEVLEKIRELRAMIDERLDILIEVDGGINLETIKQLAAAGADVFVAGSALFGADDYK 207 (220)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEEEEEEECCCCHH
T ss_conf 8663147999999999999740247759999689698889999973999999977786781199
No 55
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=87.35 E-value=1.7 Score=24.68 Aligned_cols=69 Identities=22% Similarity=0.368 Sum_probs=44.9
Q ss_pred CCCCHHHHEECCCCCC-CC--HHHHHHHHHHHH---HCCCC---EECCCCC-HHHHHHHHHCCCEEEECHHHCCCCCCC
Q ss_conf 3110011101154334-52--058999999988---75894---7224777-348999980898899711323899999
Q gi|254780801|r 153 YQLNVEGLMCIPPAMG-NP--KPHFYLLSEIAR---ECKLT---KLSMGMT-RDFELAIASGATSVRIGSGIFGERPCQ 221 (222)
Q Consensus 153 ~~L~i~GLMti~p~~~-d~--~~~F~~l~~l~~---~~~~~---~LSmGMS-~D~~~Ai~~Gst~vRiGs~iFG~R~~~ 221 (222)
+.+...=+||+-|-.. .+ ...+.+.+++++ +-+.. +.-=|.+ .-....++.|++.+=.||+||+.-+|.
T Consensus 130 ~~iD~VlvMtV~PGf~GQ~f~~~~l~ki~~l~~~~~~~~~~~~I~VDGGIn~~~i~~l~~~Gad~~V~GS~iF~~~d~~ 208 (220)
T PRK05581 130 PLLDLVLLMSVNPGFGGQKFIPEVLEKIREVRKLIDERGLDILIEVDGGVNAENIKECAEAGADVFVAGSAVFGAPDYK 208 (220)
T ss_pred HHHCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHH
T ss_conf 7415258998658878764556699999999999984599755999789898999999977999999794885799999
No 56
>PRK05354 arginine decarboxylase; Provisional
Probab=86.60 E-value=3.1 Score=22.85 Aligned_cols=156 Identities=15% Similarity=0.138 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHHHHHHCCCC-CCCCCCCHHHHHHHHCCCC-----CC----
Q ss_conf 8999999999999999981989644189987189999999999972981-0001210001111000001-----25----
Q gi|254780801|r 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQV-IFAENKLQEAKKKWIPLRK-----EW---- 72 (222)
Q Consensus 3 i~~nl~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~~~~~~G~~-~fGENrvQE~~~K~~~l~~-----~~---- 72 (222)
|.++++.+.+-...|.+.+|-...---+-++-=+|--+.|+++.++|.. .|| =|+-.|.+-+.. .+
T Consensus 74 L~~ri~~l~~aF~~Ai~e~~Y~g~y~gVyPIKVNQ~r~VVeeI~~~G~~~~~G----LEAGSKpEL~a~la~~~~~~ali 149 (634)
T PRK05354 74 LQDRVRSLNAAFKKAIEEYGYQGDYQGVYPIKVNQQRHVVEEIVASGKPYNLG----LEAGSKPELMAVLALANDPGSLI 149 (634)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCEECCEEECCHHHHHHHHHHHCCCCCCC----CCCCCHHHHHHHHHHCCCCCCEE
T ss_conf 99999999999999999829888663042234365289999999727656555----53586899999986237999559
Q ss_pred ------C---CCEEEECCCCCCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEE-----------CCCCC
Q ss_conf ------8---730230244320013201110000122222001344333333114303688970-----------04665
Q gi|254780801|r 73 ------D---VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN-----------TGYEI 132 (222)
Q Consensus 73 ------~---i~wHfIG~LQsNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN-----------~~~e~ 132 (222)
| |+.-++|. |. -..+|=.|..++.++.|-..+.+.+..+.+=+.+. ++||.
T Consensus 150 iCNGyKD~eyI~LAl~a~----kl-----G~~v~iViEk~~EL~~il~~a~~l~v~P~iGvR~kL~s~gsGkW~~SgGd~ 220 (634)
T PRK05354 150 VCNGYKDREYIRLALIGR----KL-----GHKVFIVIEKLSELELILEEAKELGVKPRLGVRARLASQGSGKWQSSGGEK 220 (634)
T ss_pred EECCCCCHHHHHHHHHHH----HC-----CCCEEEEECCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCC
T ss_conf 956827699999999999----76-----996699974689999999999974999850579986256576106778741
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCCHHHHEE--CCCCCCCCH
Q ss_conf 634657000122234431043110011101--154334520
Q gi|254780801|r 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMC--IPPAMGNPK 171 (222)
Q Consensus 133 ~K~G~~p~el~~l~~~i~~~~~L~i~GLMt--i~p~~~d~~ 171 (222)
+|+|.+..++.++++.+++..-+..-=|.- ||+.-.+.+
T Consensus 221 sKFGLs~~eil~~v~~Lk~~~~ld~L~LLHfHiGSQI~~I~ 261 (634)
T PRK05354 221 SKFGLSATEILEAVERLREAGLLDCLQLLHFHLGSQIANIR 261 (634)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCHHHHHHHEECCCCCCCCHH
T ss_conf 21588899999999998865845324331132455553499
No 57
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=86.21 E-value=3 Score=22.96 Aligned_cols=153 Identities=13% Similarity=0.099 Sum_probs=82.0
Q ss_pred CCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHC---CCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEE
Q ss_conf 10001210001111000001258730230244320013201---110000122222001344333333114303688970
Q gi|254780801|r 51 VIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIV---SLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN 127 (222)
Q Consensus 51 ~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQsNKvk~i~---~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN 127 (222)
..+|.+-++++.+..+-| .|.++|=||+--..-++.+. ..+-.||+....+..+...+.+.+.+. .+++...
T Consensus 40 ~~~G~~~i~~l~~~~~If---~DlK~~DIpnTv~~~~~~~~~~ga~~vTvh~~~g~~~i~~a~~~~~~~~~--~v~~v~~ 114 (215)
T PRK13813 40 LASGLSIIRELKQYTPVI---ADLKVADIPNTNRLICEKVFEAGADGIIVHGFTGRDSLKAVVEAAKRYGK--KVFVVVE 114 (215)
T ss_pred HHCCHHHHHHHHHHCCEE---EEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCC--CEEEEEE
T ss_conf 754999999999858907---99862446379999999999629999999256889999999998764198--4599998
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHC-CCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHCC--CCEECCCC---CHHHHHHH
Q ss_conf 046656346570001222344310-4311001110115433452058999999988758--94722477---73489999
Q gi|254780801|r 128 TGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK--LTKLSMGM---TRDFELAI 201 (222)
Q Consensus 128 ~~~e~~K~G~~p~el~~l~~~i~~-~~~L~i~GLMti~p~~~d~~~~F~~l~~l~~~~~--~~~LSmGM---S~D~~~Ai 201 (222)
++.+ |.. +.+.+.+..... ..+..+.|+-|=+.. ...++.+++.++ +..++=|- .++-..||
T Consensus 115 ls~~----g~~-~~~~~~~~~~~~~a~~~g~~Gvv~~~~~-------~~~~~~ir~~~~~~~~ivtPGI~~~~~~~~~ai 182 (215)
T PRK13813 115 MSHP----GAL-EFINPVADKLAKLANEAGAFGVVAPATR-------PERVRAIRRRLGDDLKIISPGIGAQGGKASDAI 182 (215)
T ss_pred ECCC----CHH-HHHHHHHHHHHHHHHHCCCCEEEECCCC-------HHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHH
T ss_conf 4687----746-5699999999999998699989978988-------799999998628874698576167999989999
Q ss_pred HHCCCEEEECHHHCCCCCC
Q ss_conf 8089889971132389999
Q gi|254780801|r 202 ASGATSVRIGSGIFGERPC 220 (222)
Q Consensus 202 ~~Gst~vRiGs~iFG~R~~ 220 (222)
+.||+++=||+.|+.+.+.
T Consensus 183 ~~Gad~iVVGR~It~A~dP 201 (215)
T PRK13813 183 KAGADYVIVGRSIYNAADP 201 (215)
T ss_pred HHCCCEEEECCCCCCCCCH
T ss_conf 8189999989433589999
No 58
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=84.32 E-value=2 Score=24.12 Aligned_cols=70 Identities=20% Similarity=0.281 Sum_probs=47.1
Q ss_pred CCCCCHHHHEECCCCCCC---CHHHHHHHHHHHH---HCCC---CEECCCCCH-HHHHHHHHCCCEEEECHHHCCCCCCC
Q ss_conf 431100111011543345---2058999999988---7589---472247773-48999980898899711323899999
Q gi|254780801|r 152 KYQLNVEGLMCIPPAMGN---PKPHFYLLSEIAR---ECKL---TKLSMGMTR-DFELAIASGATSVRIGSGIFGERPCQ 221 (222)
Q Consensus 152 ~~~L~i~GLMti~p~~~d---~~~~F~~l~~l~~---~~~~---~~LSmGMS~-D~~~Ai~~Gst~vRiGs~iFG~R~~~ 221 (222)
++.+...=+||+-|-..- ......+.+.+++ ..+. -+.-=|.+. -.+...+.|++.+=.||+||+.-+|.
T Consensus 130 l~~~D~VliMtV~PGf~GQ~f~~~~l~KI~~l~~~~~~~~~~~~I~VDGGI~~~ti~~l~~aGad~~V~GSaiF~~~d~~ 209 (223)
T PRK08745 130 LPELDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVKADNIGAIAAAGADTFVAGSAIFNAPDYA 209 (223)
T ss_pred HHHCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHH
T ss_conf 86479899987569988754568899999999999986499945999788798999999986999999741775799999
No 59
>PRK08005 ribulose-phosphate 3-epimerase; Validated
Probab=84.03 E-value=3.7 Score=22.34 Aligned_cols=70 Identities=20% Similarity=0.165 Sum_probs=47.3
Q ss_pred CCCCCHHHHEECCCCCCC---CHHHHHHHHHHHHHCCCC--EECCCCCH-HHHHHHHHCCCEEEECHHHCCCCCCC
Q ss_conf 431100111011543345---205899999998875894--72247773-48999980898899711323899999
Q gi|254780801|r 152 KYQLNVEGLMCIPPAMGN---PKPHFYLLSEIARECKLT--KLSMGMTR-DFELAIASGATSVRIGSGIFGERPCQ 221 (222)
Q Consensus 152 ~~~L~i~GLMti~p~~~d---~~~~F~~l~~l~~~~~~~--~LSmGMS~-D~~~Ai~~Gst~vRiGs~iFG~R~~~ 221 (222)
++.+...=+||+-|-..- ....+.+.+++++...-. +.-=|.+. -.....+.|++.+=+||+||++-+|.
T Consensus 126 l~~vD~VLvMtV~PGf~GQ~Fi~~~~~KI~~~r~~~~~~~I~vDGGIn~~t~~~~~~aGad~~V~GSaiF~~~d~~ 201 (210)
T PRK08005 126 ALQLDALMIMTSEPDGRGQQFIAAMCEKVSQSREHFPAAECWADGGITLRAARLLAAAGAQHLVIGRALFTTANYD 201 (210)
T ss_pred HHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHH
T ss_conf 4007989998778999872117889999999996287788899788788999999986999999790653699999
No 60
>KOG3111 consensus
Probab=82.96 E-value=3.4 Score=22.66 Aligned_cols=79 Identities=16% Similarity=0.273 Sum_probs=50.4
Q ss_pred CCCCCHHHHHHHHHHCCCCCCHHHHEECCCCC-CCC--HHHHHHHHHHHHHCC-CCE-E--CCCCCHHHHHHHHHCCCEE
Q ss_conf 65700012223443104311001110115433-452--058999999988758-947-2--2477734899998089889
Q gi|254780801|r 136 GIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM-GNP--KPHFYLLSEIARECK-LTK-L--SMGMTRDFELAIASGATSV 208 (222)
Q Consensus 136 G~~p~el~~l~~~i~~~~~L~i~GLMti~p~~-~d~--~~~F~~l~~l~~~~~-~~~-L--SmGMS~D~~~Ai~~Gst~v 208 (222)
|-+.+++..++ +++.+.=+||+-|-- ... .+...+.+.|+.+.. +.. . -.|||.= ..|.+.||+++
T Consensus 122 gT~Ve~~~~~~------~~~D~vLvMtVePGFGGQkFme~mm~KV~~lR~kyp~l~ieVDGGv~p~ti-~~~a~AGAN~i 194 (224)
T KOG3111 122 GTPVEDLEPLA------EHVDMVLVMTVEPGFGGQKFMEDMMPKVEWLREKYPNLDIEVDGGVGPSTI-DKAAEAGANMI 194 (224)
T ss_pred CCCHHHHHHHH------HHCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHH-HHHHHCCCCEE
T ss_conf 99589999764------102579999854897504578999899999998689843885488682137-79987588879
Q ss_pred EECHHHCCCCCCC
Q ss_conf 9711323899999
Q gi|254780801|r 209 RIGSGIFGERPCQ 221 (222)
Q Consensus 209 RiGs~iFG~R~~~ 221 (222)
=.||++||+-.++
T Consensus 195 VaGsavf~a~d~~ 207 (224)
T KOG3111 195 VAGSAVFGAADPS 207 (224)
T ss_pred EECCEEECCCCHH
T ss_conf 8633345279989
No 61
>pfam00834 Ribul_P_3_epim Ribulose-phosphate 3 epimerase family. This enzyme catalyses the conversion of D-ribulose 5-phosphate into D-xylulose 5-phosphate.
Probab=81.23 E-value=3.5 Score=22.55 Aligned_cols=65 Identities=22% Similarity=0.380 Sum_probs=41.6
Q ss_pred CCCCHHHHEECCCCCC-CC--HHHHHHHHHHHHHC---CCC---EECCCCCHH-HHHHHHHCCCEEEECHHHCCC
Q ss_conf 3110011101154334-52--05899999998875---894---722477734-899998089889971132389
Q gi|254780801|r 153 YQLNVEGLMCIPPAMG-NP--KPHFYLLSEIAREC---KLT---KLSMGMTRD-FELAIASGATSVRIGSGIFGE 217 (222)
Q Consensus 153 ~~L~i~GLMti~p~~~-d~--~~~F~~l~~l~~~~---~~~---~LSmGMS~D-~~~Ai~~Gst~vRiGs~iFG~ 217 (222)
+.+...=+||+-|-.. .+ ...+.+.+++++-+ +.. +.-=|.+.+ .....+.|++.+=.||+|||+
T Consensus 126 ~~iD~VLvMtV~PGf~GQ~f~~~~l~KI~~lr~~~~~~~~~~~I~vDGGIn~~ti~~l~~~Gad~~V~GSaiF~s 200 (201)
T pfam00834 126 DDLDLVLLMSVNPGFGGQSFIPSVLPKIRKVRKMIDEGGLDTLIEVDGGVNLDNIPQIAEAGADVLVAGSAVFGA 200 (201)
T ss_pred HHCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCEECCC
T ss_conf 427989998866898876456779999999999998269980799989888999999998799999978002459
No 62
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=80.60 E-value=4.8 Score=21.61 Aligned_cols=69 Identities=19% Similarity=0.229 Sum_probs=43.8
Q ss_pred CCCCCHHHHEECCCCCC-CC--HHHHHHHH---HHHHHCCC---CEECCCCCH-HHHHHHHHCCCEEEECHHHCCCCCC
Q ss_conf 43110011101154334-52--05899999---99887589---472247773-4899998089889971132389999
Q gi|254780801|r 152 KYQLNVEGLMCIPPAMG-NP--KPHFYLLS---EIARECKL---TKLSMGMTR-DFELAIASGATSVRIGSGIFGERPC 220 (222)
Q Consensus 152 ~~~L~i~GLMti~p~~~-d~--~~~F~~l~---~l~~~~~~---~~LSmGMS~-D~~~Ai~~Gst~vRiGs~iFG~R~~ 220 (222)
++.+...=+||+-|-.. .. .....+.+ ++.++.+. -+.-=|.+. -...+.+.|++.+=.||+||+.-+|
T Consensus 145 L~~vD~VLvMtV~PGfgGQ~fi~~~l~KI~~l~~~~~~~~~~~~I~VDGGI~~~ti~~~~~aGad~~V~GS~iF~~~d~ 223 (235)
T PRK08091 145 LSDVDVIQLLTLDPRYGSKMRSSDLHERVAQLLCLLGDKREGKLIVIDGSMTQDQLPSLIAQGIDWVVSGSALFSDDRL 223 (235)
T ss_pred HHHCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHCCCCCH
T ss_conf 7053999998766898888678789999999999999649991599848989888999998399999978243379999
No 63
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=80.44 E-value=3.3 Score=22.68 Aligned_cols=69 Identities=19% Similarity=0.323 Sum_probs=44.5
Q ss_pred CCCCHHHHEECCCCCCC-C--HHHHHHHHHHHH---HCCCC---EECCCCCH-HHHHHHHHCCCEEEECHHHCCCCCCC
Q ss_conf 31100111011543345-2--058999999988---75894---72247773-48999980898899711323899999
Q gi|254780801|r 153 YQLNVEGLMCIPPAMGN-P--KPHFYLLSEIAR---ECKLT---KLSMGMTR-DFELAIASGATSVRIGSGIFGERPCQ 221 (222)
Q Consensus 153 ~~L~i~GLMti~p~~~d-~--~~~F~~l~~l~~---~~~~~---~LSmGMS~-D~~~Ai~~Gst~vRiGs~iFG~R~~~ 221 (222)
+.+...=+||+-|-..- . ...+.+.+++++ +-+.. +.-=|.+. -....++.|++.+=.||+||+.-+|+
T Consensus 127 ~~~D~VLvMtV~PGf~GQ~f~~~~l~Ki~~l~~~~~~~~~~~~I~VDGGI~~~ti~~l~~aGad~~V~GS~iF~~~d~~ 205 (220)
T PRK08883 127 DKVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDASGRDIRLEIDGGVKVDNIREIAEAGADMFVAGSAIFGQPDYK 205 (220)
T ss_pred HHCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHH
T ss_conf 7469799987458988754557799999999998874499807999898789999999987999999682674899999
No 64
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=79.73 E-value=3.9 Score=22.19 Aligned_cols=154 Identities=13% Similarity=0.040 Sum_probs=83.1
Q ss_pred CCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCC
Q ss_conf 00012100011110000012587302302443200132011100001222220013443333331143036889700466
Q gi|254780801|r 52 IFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE 131 (222)
Q Consensus 52 ~fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQsNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e 131 (222)
.+|-+=+.+++++++..+=..|++.|=+|.+=...+...-..+-.+|+.-.....+..-+.+.+.++ .+++.+.+-
T Consensus 37 ~~G~~~v~~lk~~~p~~~I~~DlK~~D~g~~~~~~~~~~Gad~itVh~~~~~~ti~~a~~~a~~~~~----~v~vdl~~~ 112 (206)
T TIGR03128 37 NEGIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADIVTVLGVADDATIKGAVKAAKKHGK----EVQVDLINV 112 (206)
T ss_pred HHCHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCC----EEEEEECCC
T ss_conf 7689999999987899979999504474389999999728989999434897999999999997399----799997478
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCHHHHEECCCCCCC--CHHHHHHHHHHHHHCCCCEEC-CC-C-CHHHHHHHHHCCC
Q ss_conf 56346570001222344310431100111011543345--205899999998875894722-47-7-7348999980898
Q gi|254780801|r 132 IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN--PKPHFYLLSEIARECKLTKLS-MG-M-TRDFELAIASGAT 206 (222)
Q Consensus 132 ~~K~G~~p~el~~l~~~i~~~~~L~i~GLMti~p~~~d--~~~~F~~l~~l~~~~~~~~LS-mG-M-S~D~~~Ai~~Gst 206 (222)
.+....++.+.+ +-+.++-.-.+.+.. ....+..+..+....+-...+ .| - -..-+.|++.|++
T Consensus 113 --------~~~~~~a~~~~~---~g~d~v~~h~g~d~~~~~~~~~~~~~~~~~~~~~~~i~v~gGi~~~t~~~ai~~Gad 181 (206)
T TIGR03128 113 --------KDKVKRAKELKE---LGADYIGVHTGLDEQAKGQNPFEDLQTILKLVKEARVAVAGGINLDTIPDVIKLGPD 181 (206)
T ss_pred --------CCHHHHHHHHHH---CCCCEEEEECCCCHHHCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHCCCC
T ss_conf --------988999999997---589889950250044326798899999986257873636798683569999866999
Q ss_pred EEEECHHHCCCCCC
Q ss_conf 89971132389999
Q gi|254780801|r 207 SVRIGSGIFGERPC 220 (222)
Q Consensus 207 ~vRiGs~iFG~R~~ 220 (222)
+|=||++|+++.+.
T Consensus 182 ~vVVGR~It~A~dP 195 (206)
T TIGR03128 182 IVIVGGAITKAADP 195 (206)
T ss_pred EEEECCCCCCCCCH
T ss_conf 99989612479999
No 65
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=78.02 E-value=6.6 Score=20.70 Aligned_cols=68 Identities=18% Similarity=0.321 Sum_probs=46.5
Q ss_pred CCCCHHHHEECCCCC-CC--CHHHHHHHHHHHHHCC-C-CEECCCCCH-HHHHHHHHCCCEEEECHHHCCCCCC
Q ss_conf 311001110115433-45--2058999999988758-9-472247773-4899998089889971132389999
Q gi|254780801|r 153 YQLNVEGLMCIPPAM-GN--PKPHFYLLSEIARECK-L-TKLSMGMTR-DFELAIASGATSVRIGSGIFGERPC 220 (222)
Q Consensus 153 ~~L~i~GLMti~p~~-~d--~~~~F~~l~~l~~~~~-~-~~LSmGMS~-D~~~Ai~~Gst~vRiGs~iFG~R~~ 220 (222)
+.+...=+||+-|-. .. ....+.+.+++++... + -+.-=|.+. -....++.|++.+=.||+||+.-+|
T Consensus 134 ~~iD~VLlMsV~PGf~GQ~Fi~~~l~KI~~lr~~~~~~~I~VDGGIn~~ti~~l~~aGad~~V~GSaiF~~~d~ 207 (224)
T PTZ00170 134 GLVDMVLVMTVEPGFGGQSFMHDMMPKVRQLRQRYPHLNIQVDGGINPDTIDLAAEAGANVIVAGTSIFKANDR 207 (224)
T ss_pred CCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCH
T ss_conf 44578999855699876214588999999998548997599958999899999998699999978588679999
No 66
>TIGR01508 rib_reduct_arch diaminohydroxyphosphoribosylaminopyrimidine reductase; InterPro: IPR006401 These sequences represent a specific reductase of riboflavin biosynthesis in the archaea, diaminohydroxyphosphoribosylaminopyrimidine reductase. It should not be confused with bacterial 5-amino-6-(5-phosphoribosylamino)uracil reductase. The intermediate 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine in riboflavin biosynthesis is reduced first and then deaminated in both archaea and fungi, opposite to the order in bacteria. The subsequent deaminase is not presently known and is not closely homologous to the deaminase domain fused to the reductase domain, which is similar to this protein but found in most bacteria. .
Probab=71.49 E-value=3.5 Score=22.57 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=29.1
Q ss_pred HHCEEEEECCCCCHHH---HHHHHHCCCC--CCCCCCCH
Q ss_conf 4418998718999999---9999972981--00012100
Q gi|254780801|r 26 DSVSLVAVSKMVDSKK---IRVALSCGQV--IFAENKLQ 59 (222)
Q Consensus 26 ~~v~LiaVtK~~~~e~---I~~~~~~G~~--~fGENrvQ 59 (222)
+.=++|+||.+.|.|. |+++.+.|.. -||||||+
T Consensus 99 ~A~T~v~~s~~~~~Ekekk~~~l~~~gv~V~~~G~~~v~ 137 (224)
T TIGR01508 99 EAKTVVAVSEAEPEEKEKKVEELEKKGVEVVKFGEERVD 137 (224)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 984599960478730367888777497489992478534
No 67
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=71.47 E-value=9.5 Score=19.61 Aligned_cols=66 Identities=20% Similarity=0.356 Sum_probs=43.0
Q ss_pred CCCCHHHHEECCCCCC-CC--HHHHHHHHHHHH---HCCC---CEECCCCCHH-HHHHHHHCCCEEEEC-HHHCCCC
Q ss_conf 3110011101154334-52--058999999988---7589---4722477734-899998089889971-1323899
Q gi|254780801|r 153 YQLNVEGLMCIPPAMG-NP--KPHFYLLSEIAR---ECKL---TKLSMGMTRD-FELAIASGATSVRIG-SGIFGER 218 (222)
Q Consensus 153 ~~L~i~GLMti~p~~~-d~--~~~F~~l~~l~~---~~~~---~~LSmGMS~D-~~~Ai~~Gst~vRiG-s~iFG~R 218 (222)
+.+...=+|++-|-.. .. ...+.+.+++++ +.++ -+.-=|.+.+ ....++.|++.+=.| |+||+..
T Consensus 127 ~~vD~VLvMsV~PGf~GQ~Fi~~~l~KI~~lr~~~~~~~~~~~I~VDGGI~~~~i~~~~~aGAd~~V~GssaiF~~~ 203 (227)
T PRK09722 127 HLADKVTVMTVDPGFAGQPFIPEMLDKIAELKAWREREGLEYEIEVDGSCNQKTYEKLMAAGADVFIVGTSGLFNHA 203 (227)
T ss_pred HHCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCHHHCCCC
T ss_conf 43798999988899987656688999999999999825998269998988899999999869999997748974899
No 68
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=67.47 E-value=11 Score=19.06 Aligned_cols=113 Identities=18% Similarity=0.218 Sum_probs=64.9
Q ss_pred CCCHHHHHHHHH-HHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCC--CCCCHHH------HEECCCCCC--CC
Q ss_conf 220013443333-331143036889700466563465700012223443104--3110011------101154334--52
Q gi|254780801|r 102 REKTASLLSLEM-IKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK--YQLNVEG------LMCIPPAMG--NP 170 (222)
Q Consensus 102 s~~~a~~L~~~~-~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~--~~L~i~G------LMti~p~~~--d~ 170 (222)
|.++..++-++. ...+...+|.+-+|. .|..+.|.+++|...+++.+.+. .-+++.+ -+.+++... ..
T Consensus 198 R~Rf~lEii~avr~~vg~d~~v~~Ris~-~d~~~~G~~~~d~~~~~~~l~~~GvD~i~vs~G~~~~~~~~~~~~~~~~~~ 276 (338)
T cd04733 198 RARLLLEIYDAIRAAVGPGFPVGIKLNS-ADFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAR 276 (338)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECH-HHHCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 9889999999999971998869998453-542479999899999999998769988994688545732247765444567
Q ss_pred HHHHHHH-HHHHHHCCCCEECCCCCH---HHHHHHHHC-CCEEEECHHHC
Q ss_conf 0589999-999887589472247773---489999808-98899711323
Q gi|254780801|r 171 KPHFYLL-SEIARECKLTKLSMGMTR---DFELAIASG-ATSVRIGSGIF 215 (222)
Q Consensus 171 ~~~F~~l-~~l~~~~~~~~LSmGMS~---D~~~Ai~~G-st~vRiGs~iF 215 (222)
..+|..+ +.+++....+.+.-|-=. +.+.+|++| +.+|=+|+.+.
T Consensus 277 ~~~~~~~a~~ik~~~~~Pvi~~G~i~~~~~ae~~l~~g~~DlV~~gR~~i 326 (338)
T cd04733 277 EAYFLEFAEKIRKVTKTPLMVTGGFRTRAAMEQALASGAVDGIGLARPLA 326 (338)
T ss_pred CCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEHHHHHHHH
T ss_conf 51059999999998499799989989999999999879951089889999
No 69
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II; InterPro: IPR006436 This family describes the type II glyceraldehyde-3-phosphate dehydrogenases which are limited to archaea. These enzymes catalyze the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. In archaea, either NAD or NADP may be utilised as the cofactor.; GO: 0008943 glyceraldehyde-3-phosphate dehydrogenase activity, 0050661 NADP binding, 0051287 NAD binding, 0006096 glycolysis, 0005737 cytoplasm.
Probab=67.34 E-value=3.3 Score=22.68 Aligned_cols=43 Identities=21% Similarity=0.310 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHHHHHHCCCCCCC
Q ss_conf 99999999999981989644189987189999999999972981000
Q gi|254780801|r 8 QVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFA 54 (222)
Q Consensus 8 ~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~~~~~~G~~~fG 54 (222)
-.|=+|++.|..+ -++-+||.|||+.|.=+-..|.+.|++.+-
T Consensus 7 GTIGKRVAdAv~k----QdDMklvGVtKtsPdfEA~~A~e~Gi~~Y~ 49 (335)
T TIGR01546 7 GTIGKRVADAVIK----QDDMKLVGVTKTSPDFEAFIAKEKGIDIYV 49 (335)
T ss_pred CCCCHHHHHHHCC----CCCCEEEEECCCCCCHHHHHHHHCCCEEEE
T ss_conf 5622244444136----998237741168983888888767932642
No 70
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=65.61 E-value=7.9 Score=20.16 Aligned_cols=154 Identities=14% Similarity=0.137 Sum_probs=78.4
Q ss_pred CCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHCC-CCHH--CCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECC
Q ss_conf 0012100011110000012587302302443200132011-1000--012222200134433333311430368897004
Q gi|254780801|r 53 FAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVS-LFDV--IETVSREKTASLLSLEMIKQSRFLPVYIQVNTG 129 (222)
Q Consensus 53 fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQsNKvk~i~~-~~~~--Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~ 129 (222)
+|+.-++++.+.- ++=..|.++|=||+--..-++.+.+ .+|+ ||+.--....+.....+.+.++ .+|.=..++
T Consensus 37 ~g~~~i~~l~~~~--~~iflDlK~~DI~nTv~~~~~~~~~~~~d~~Tvh~~~G~~~l~~~~~~~~~~~~--~vl~V~~lt 112 (216)
T cd04725 37 AGPEIVKELRELG--FLVFLDLKLGDIPNTVAAAAEALLGLGADAVTVHPYGGSDMLKAALEAAEEKGK--GLFAVTVLS 112 (216)
T ss_pred CCHHHHHHHHHCC--CEEEEEHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCC--EEEEEEEEC
T ss_conf 3999999998679--778630353780589999999998459889998467879999999998643598--069999716
Q ss_pred C---CCCCCCCCCCHHHHHHHHHHC-CCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHCCCCEECCCC-----------C
Q ss_conf 6---656346570001222344310-431100111011543345205899999998875894722477-----------7
Q gi|254780801|r 130 Y---EIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGM-----------T 194 (222)
Q Consensus 130 ~---e~~K~G~~p~el~~l~~~i~~-~~~L~i~GLMti~p~~~d~~~~F~~l~~l~~~~~~~~LSmGM-----------S 194 (222)
. +.-+.|+.. ...+++..+.. .....+.|+-|=|.. +... .+....+ +..++=|- .
T Consensus 113 s~~~~~l~~~~~~-~~~~~~~~~~~~a~~~g~~G~V~~~~~---~~~i---~~~~~~~--~~iltPGI~~~~~~~dq~r~ 183 (216)
T cd04725 113 SPGALDLQEGIPG-SLEDLVERLAKLAREAGVDGVVCGATE---PEAL---RRALGPD--FLILTPGIGAQGSGDDQKRG 183 (216)
T ss_pred CCCHHHHHHHHCC-CHHHHHHHHHHHHHHHCCCEEEECCCH---HHHH---HHHCCCC--CEEECCCCCCCCCCCCCCCC
T ss_conf 8887899988537-789999999999986189779988624---8999---9850886--17973560577776688266
Q ss_pred HHHHHHHHHCCCEEEECHHHCCCCC
Q ss_conf 3489999808988997113238999
Q gi|254780801|r 195 RDFELAIASGATSVRIGSGIFGERP 219 (222)
Q Consensus 195 ~D~~~Ai~~Gst~vRiGs~iFG~R~ 219 (222)
.+.+.|++.|++++=||++|..+.+
T Consensus 184 ~tp~~a~~~gad~ivVGR~I~~a~~ 208 (216)
T cd04725 184 GTPEDAIRAGADYIVVGRPITQAAD 208 (216)
T ss_pred CCHHHHHHCCCCEEEECCCCCCCCC
T ss_conf 8999999879999998910148999
No 71
>TIGR02349 DnaJ_bact chaperone protein DnaJ; InterPro: IPR012724 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold . DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation . Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. DnaJ comprises a 70-residue N-terminal domain (the J-domain); a 30-residue glycine-rich region (the G-domain); a central domain containing 4 repeats of a CxxCxGxG motif (the CRR-domain); and a 120-170 residue C-terminal region. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins , either together or separately. This entry mostly consists of bacterial forms of DnaJ. The three components of the DnaK-DnaJ-GrpE system are typically encoded by consecutive genes. DnaJ homologues occur in many genomes, typically not encoded near DnaK and GrpE-like genes. Most such proteins are not included in this family, though some chloroplast homologues are included; GO: 0005524 ATP binding, 0051082 unfolded protein binding, 0006457 protein folding, 0009408 response to heat.
Probab=64.15 E-value=5.1 Score=21.46 Aligned_cols=45 Identities=22% Similarity=0.324 Sum_probs=34.9
Q ss_pred EEEEECCCCCHHHHHHHHH--CCCCCCCCCC--CHHHHHHHHCCCCCCC
Q ss_conf 8998718999999999997--2981000121--0001111000001258
Q gi|254780801|r 29 SLVAVSKMVDSKKIRVALS--CGQVIFAENK--LQEAKKKWIPLRKEWD 73 (222)
Q Consensus 29 ~LiaVtK~~~~e~I~~~~~--~G~~~fGENr--vQE~~~K~~~l~~~~~ 73 (222)
.+|.|||..+.++|+.||+ |=..|===|. --||++|+-+..+.++
T Consensus 4 eiLGVsK~A~~~EIKKAYRkLA~kYHPD~Nkgn~~~AEeKFKEi~EAYe 52 (386)
T TIGR02349 4 EILGVSKDASEEEIKKAYRKLAKKYHPDRNKGNDKEAEEKFKEINEAYE 52 (386)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 5624279989899999999888851788888888375676578887753
No 72
>pfam00215 OMPdecase Orotidine 5'-phosphate decarboxylase / HUMPS family. This family includes Orotidine 5'-phosphate decarboxylase enzymes EC:4.1.1.23 that are involved in the final step of pyrimidine biosynthesis. The family also includes enzymes such as hexulose-6-phosphate synthase. This family appears to be distantly related to pfam00834.
Probab=64.00 E-value=2.3 Score=23.79 Aligned_cols=154 Identities=18% Similarity=0.188 Sum_probs=76.5
Q ss_pred CCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHCCC-CHH--CCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEC
Q ss_conf 000121000111100000125873023024432001320111-000--01222220013443333331143036889700
Q gi|254780801|r 52 IFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSL-FDV--IETVSREKTASLLSLEMIKQSRFLPVYIQVNT 128 (222)
Q Consensus 52 ~fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQsNKvk~i~~~-~~~--Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~ 128 (222)
.+|.+-+.++++.- ++=..|.++|=||+.-.+-++.+... +|+ ||+.-.....+...+.+.+.+. ..+|.=..+
T Consensus 38 ~~G~~~i~~l~~~~--~~iflDlKl~DI~~Tv~~~~~~~~~~~~d~~Tvh~~~G~~~l~~a~~~a~~~~~-~~vl~v~~l 114 (218)
T pfam00215 38 AFGLKLVAELRKHG--FLIFLDLKFADIGNTVAKQAKYKAKLGADIVTVHAYAGDGTLKAAKEAAEEYGG-RGLLLVAEL 114 (218)
T ss_pred HCCHHHHHHHHHCC--CEEEEEEHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCC-CEEEEEEEC
T ss_conf 46999999999869--939997212270789999999998569989999157997999999999874399-708999946
Q ss_pred CCC----CCCCCCCCCHHHHHHHHHHCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHCCCCEEC------CCCCHH--
Q ss_conf 466----56346570001222344310431100111011543345205899999998875894722------477734--
Q gi|254780801|r 129 GYE----IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLS------MGMTRD-- 196 (222)
Q Consensus 129 ~~e----~~K~G~~p~el~~l~~~i~~~~~L~i~GLMti~p~~~d~~~~F~~l~~l~~~~~~~~LS------mGMS~D-- 196 (222)
+.. -+..|.. ......+....... ..+.|+-|=+... ...+....++ ..++ -+-++|
T Consensus 115 ts~~~~~~~~~~~~-~~~~~~v~~~~~~~-~~~~G~V~s~~~~-------~~~~~~~~~~--~~vtPGI~~~~~~~~dq~ 183 (218)
T pfam00215 115 SSKGSLDLQEEGDL-GYTQEIVHRAADLA-AGVDGVVASATEP-------EALREIRPDF--LILTPGIGLQGGDAGGQQ 183 (218)
T ss_pred CCCCHHHHHHHHCC-CCHHHHHHHHHHHH-CCCCEEECCHHHH-------HHHHHHHCCC--EEECCCCCCCCCCCCCCC
T ss_conf 99998999987514-72999999999745-6785576571677-------8887651454--485377687654378973
Q ss_pred ----HHHHHHHCCCEEEECHHHCCCCC
Q ss_conf ----89999808988997113238999
Q gi|254780801|r 197 ----FELAIASGATSVRIGSGIFGERP 219 (222)
Q Consensus 197 ----~~~Ai~~Gst~vRiGs~iFG~R~ 219 (222)
...|++.|++++=||++|.++.+
T Consensus 184 r~~~~~~a~~~Gad~iIVGR~I~~a~d 210 (218)
T pfam00215 184 RVTTPAVAKEAGADIIIVGRGITGAGD 210 (218)
T ss_pred CCCCHHHHHHCCCCEEEECHHCCCCCC
T ss_conf 258999999869999998910057999
No 73
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=62.41 E-value=6.7 Score=20.64 Aligned_cols=71 Identities=17% Similarity=0.087 Sum_probs=50.5
Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHCCCCHH-CCCCCCCCHHHHHHHHHHHHCCCE
Q ss_conf 2981000121000111100000125873023024432001320111000-012222200134433333311430
Q gi|254780801|r 48 CGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDV-IETVSREKTASLLSLEMIKQSRFL 120 (222)
Q Consensus 48 ~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQsNKvk~i~~~~~~-Ihsvds~~~a~~L~~~~~~~~~~~ 120 (222)
....+.|.+|+.-+.+|..++.. +++.+-+-.--+.+....+..+|+ |.+.|+......||+.|.+.+++.
T Consensus 67 ~~~~diG~~Ka~~a~~~l~~lNp--~v~i~~~~~~~~~~~~~~i~~~D~Vvd~~dn~~~r~~iN~~c~~~~ipl 138 (197)
T cd01492 67 IPAEDLGQNRAEASLERLRALNP--RVKVSVDTDDISEKPEEFFSQFDVVVATELSRAELVKINELCRKLGVKF 138 (197)
T ss_pred CCCCCCCCCHHHHHHHHHHHHCC--CCEEEEEECCCCHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHCCCCE
T ss_conf 32334788859999999997389--9728987045857689998289999999999999999999999819978
No 74
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=61.96 E-value=11 Score=19.22 Aligned_cols=44 Identities=18% Similarity=0.360 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHCC--CCEECCCCCHHHHHHHH---HCCCEEEECHHHC
Q ss_conf 58999999988758--94722477734899998---0898899711323
Q gi|254780801|r 172 PHFYLLSEIARECK--LTKLSMGMTRDFELAIA---SGATSVRIGSGIF 215 (222)
Q Consensus 172 ~~F~~l~~l~~~~~--~~~LSmGMS~D~~~Ai~---~Gst~vRiGs~iF 215 (222)
...+.+++++++++ ++...+|==.+++.|+| .||++|-|||++|
T Consensus 226 ~al~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~ 274 (310)
T COG0167 226 IALRVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQVGTALI 274 (310)
T ss_pred HHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCHHEEEEEEE
T ss_conf 8999999999842899748984686969999999982975640411210
No 75
>pfam00899 ThiF ThiF family. This family contains a repeated domain in ubiquitin activating enzyme E1 and members of the bacterial ThiF/MoeB/HesA family.
Probab=59.90 E-value=5.5 Score=21.23 Aligned_cols=103 Identities=15% Similarity=0.181 Sum_probs=59.7
Q ss_pred HHHHHHHCCCCHHHCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHCCC
Q ss_conf 99999981989644189987189999999999972981000121000111100000125873023024432001320111
Q gi|254780801|r 14 IENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSL 93 (222)
Q Consensus 14 I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQsNKvk~i~~~ 93 (222)
+.....++|- ..++|+== -....+.+..-+-+...+.|+++++-+.++...+....+++. +-..+-+..+...+..
T Consensus 16 ~~~~La~~Gv--g~i~lvD~-D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~-~~~~i~~~~~~~~~~~ 91 (134)
T pfam00899 16 AAEYLARAGV--GKLTLVDF-DTVELSNLNRQILFTESDIGKPKAEVAKERLRAINPDVEVEA-YPERLTPENLEELLKG 91 (134)
T ss_pred HHHHHHHHCC--CEEEEEEC-CCCCCCCCCCEEECCHHHCCCEEHHHHHHHHHHHCCCCEEEE-EECCCCHHHHHHCCCC
T ss_conf 9999999389--74999989-567632227224233646688107999999997789958999-9256797787642644
Q ss_pred CHH-CCCCCCCCHHHHHHHHHHHHCCCE
Q ss_conf 000-012222200134433333311430
Q gi|254780801|r 94 FDV-IETVSREKTASLLSLEMIKQSRFL 120 (222)
Q Consensus 94 ~~~-Ihsvds~~~a~~L~~~~~~~~~~~ 120 (222)
+|+ |.++|+...-..|+..|.+.++|.
T Consensus 92 ~DvVi~~~Dn~~~r~~ln~~c~~~~ip~ 119 (134)
T pfam00899 92 ADLVVDALDNFAARYLLNDACVKRGIPL 119 (134)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHCCCCE
T ss_conf 8899999899999999999999859989
No 76
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=59.73 E-value=12 Score=18.94 Aligned_cols=46 Identities=20% Similarity=0.364 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf 99999999999998198964418998718999999999997298100012
Q gi|254780801|r 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56 (222)
Q Consensus 7 l~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~~~~~~G~~~fGEN 56 (222)
|-.|=++++.|... .++..|++|+|+.|......+.+-|+..++-.
T Consensus 10 yGtIGkRVAdav~~----q~DmelVGV~k~~pd~~a~~a~~kG~~vy~~~ 55 (338)
T PRK04207 10 YGTIGKRVADAVAA----QDDMEVVGVSKTKPDYEARVAVERGYPLYVAD 55 (338)
T ss_pred CCCHHHHHHHHHHC----CCCCEEEEEECCCCCHHHHHHHHCCCCEEECC
T ss_conf 86055899888735----99818997867999778999998699678537
No 77
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase family protein; InterPro: IPR005720 Dihydroorotate dehydrogenase (1.3.3.1 from EC) (DHOdehase) catalyzes the fourth step in the de novo biosynthesis of pyrimidine, the conversion of dihydroorotate into orotate. DHOdehase is a ubiquitous FAD flavoprotein. In bacteria (gene pyrD), DHOdease is located on the inner side of the cytosolic membrane. In some yeasts, such as in Saccharomyces cerevisiae (gene URA1, subfamily 2), it is a cytosolic protein while in other eukaryotes it is found in the mitochondria . This describes dihydroorotate dehydrogenases subfamily 1 that includes a number of uncharacterised proteins and a domain of dihydropyrimidine dehydrogenase.; GO: 0004158 dihydroorotate oxidase activity, 0006207 'de novo' pyrimidine base biosynthetic process, 0005737 cytoplasm.
Probab=55.03 E-value=11 Score=19.16 Aligned_cols=144 Identities=21% Similarity=0.336 Sum_probs=78.4
Q ss_pred CCCCHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCC-
Q ss_conf 1210001111000001258730230244320013201110000122222001344333333114303688970046656-
Q gi|254780801|r 55 ENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQ- 133 (222)
Q Consensus 55 ENrvQE~~~K~~~l~~~~~i~wHfIG~LQsNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~- 133 (222)
|.+..|+.++..+++.+ ...+|+.+-=...-.-+..++-+++-+.+= ..+++|+|=---
T Consensus 76 e~fl~E~~~~~~e~~t~---dvr~I~svyG~~~EEfa~va~~~e~A~~y~-----------------~~~ELN~SCPhvK 135 (308)
T TIGR01037 76 EAFLEELKDVREEVPTH---DVRLIASVYGESEEEFAEVAEKLEDADPYV-----------------DAYELNVSCPHVK 135 (308)
T ss_pred HHHHHHHHHHHHCCCCC---CEEEEEEECCCCCHHHHHHHHHHHHHHHHH-----------------EEEECCCCCCCCC
T ss_conf 99998632566438987---528999831888225899999872113440-----------------0001047774434
Q ss_pred -----CCCCCCCHHHHHHHHHHCC----------CCCC-------------------HHHHE-ECC-------CCCCC--
Q ss_conf -----3465700012223443104----------3110-------------------01110-115-------43345--
Q gi|254780801|r 134 -----KSGIMPNQTKDFVILCRQK----------YQLN-------------------VEGLM-CIP-------PAMGN-- 169 (222)
Q Consensus 134 -----K~G~~p~el~~l~~~i~~~----------~~L~-------------------i~GLM-ti~-------p~~~d-- 169 (222)
..|-.|+-..++++.+++- ||+. +.-|| .|. |.-.+
T Consensus 136 ~G~G~~iG~dP~l~~~vv~avK~~~d~Pv~aKLsPNV~Di~eiA~a~eeaGaDGlt~INTl~PGMkIDI~~~kPiLaNk~ 215 (308)
T TIGR01037 136 GGGGIEIGQDPELSADVVKAVKDKVDVPVFAKLSPNVTDITEIAKAAEEAGADGLTLINTLRPGMKIDIKAKKPILANKT 215 (308)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHCCCCCCEECC
T ss_conf 23465547787799999999830007865786486566899998887532776164001203467773420787000045
Q ss_pred -----C--HH-HHHHHHHHHHHCC--CCEECCCCCHHHHHHHHH---CCCEEEECHHHCCCC
Q ss_conf -----2--05-8999999988758--947224777348999980---898899711323899
Q gi|254780801|r 170 -----P--KP-HFYLLSEIARECK--LTKLSMGMTRDFELAIAS---GATSVRIGSGIFGER 218 (222)
Q Consensus 170 -----~--~~-~F~~l~~l~~~~~--~~~LSmGMS~D~~~Ai~~---Gst~vRiGs~iFG~R 218 (222)
| ++ .-+-..+|++.+. .+..=||==.+||.|+|+ ||-=|-|||++|=.+
T Consensus 216 GGlSGPAIKPiA~r~VYdly~~~ddriPIiGvGGi~~~eDA~Efl~AGAsAVQvGtAvyy~g 277 (308)
T TIGR01037 216 GGLSGPAIKPIAVRMVYDLYKEVDDRIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRG 277 (308)
T ss_pred CCCCCCCCCCEEEEEHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCEEEEEEEEECCC
T ss_conf 88507501422121000047773782346863274558999999985220220002221177
No 78
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=54.59 E-value=19 Score=17.57 Aligned_cols=99 Identities=17% Similarity=0.327 Sum_probs=53.3
Q ss_pred HHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEECCC----------CCCC-----CH
Q ss_conf 34433333311430368897004665634657000122234431043110011101154----------3345-----20
Q gi|254780801|r 107 SLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP----------AMGN-----PK 171 (222)
Q Consensus 107 ~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMti~p----------~~~d-----~~ 171 (222)
..+.....+.++..|+|+-|-.+-+ .+++.++++.+.+ -.+.|+.+.-. .... =+
T Consensus 196 ~~v~~~~~~~~~~~PI~vKisPDl~-------~~~l~~i~~~~~~---~~idGii~tNTt~~r~~l~~~~~~~~GGLSG~ 265 (336)
T PRK05286 196 AALKEAQAELGKYVPLLLKIAPDLS-------DEELDDIADLALE---HGIDGIIATNTTLDRSGLEGPNAEEAGGLSGR 265 (336)
T ss_pred HHHHHHHHHCCCCCCEEEECCCCCC-------HHHHHHHHHHHHH---HCCCEEEEECCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 9999999843788864883288888-------7899999999998---19868999588676644566555666874640
Q ss_pred H----HHHHHHHHHHHCC--CCEECCCCC---HHHHHHHHHCCCEEEECHHHC
Q ss_conf 5----8999999988758--947224777---348999980898899711323
Q gi|254780801|r 172 P----HFYLLSEIARECK--LTKLSMGMT---RDFELAIASGATSVRIGSGIF 215 (222)
Q Consensus 172 ~----~F~~l~~l~~~~~--~~~LSmGMS---~D~~~Ai~~Gst~vRiGs~iF 215 (222)
+ +-..++.+++..+ +...+.|== .|...-|..||++|-|.|++-
T Consensus 266 pl~~~s~~~v~~~~~~~~~~~pIIgvGGI~s~~da~~~i~aGAslVQlyTgli 318 (336)
T PRK05286 266 PLFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLI 318 (336)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 67899999999999973999709998998999999999986996887416787
No 79
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=54.34 E-value=19 Score=17.54 Aligned_cols=101 Identities=20% Similarity=0.302 Sum_probs=59.4
Q ss_pred HCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCC--CCCCHHHHEECC-----CCCCCCHHHHH-HHHHHHHHCCCC
Q ss_conf 1143036889700466563465700012223443104--311001110115-----43345205899-999998875894
Q gi|254780801|r 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK--YQLNVEGLMCIP-----PAMGNPKPHFY-LLSEIARECKLT 187 (222)
Q Consensus 116 ~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~--~~L~i~GLMti~-----p~~~d~~~~F~-~l~~l~~~~~~~ 187 (222)
.+...+|-+-+|.. |....|..++|..++++.+.+. .-|++.+=+.-. |....+...|. ....+++....+
T Consensus 205 vg~df~vgvRls~~-d~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~p 283 (327)
T cd02803 205 VGPDFPVGVRLSAD-DFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIP 283 (327)
T ss_pred CCCCCCEEEEECHH-HCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 39887617997702-12689999899999999998559998997778456675446787777522389999999976981
Q ss_pred EECCCCCH---HHHHHHHHC-CCEEEECHHHCCC
Q ss_conf 72247773---489999808-9889971132389
Q gi|254780801|r 188 KLSMGMTR---DFELAIASG-ATSVRIGSGIFGE 217 (222)
Q Consensus 188 ~LSmGMS~---D~~~Ai~~G-st~vRiGs~iFG~ 217 (222)
.+.-|.=. +.+.+|++| +++|=+|+.+.-.
T Consensus 284 vi~~G~i~~~~~a~~~l~~g~~D~V~~gR~~iad 317 (327)
T cd02803 284 VIAVGGIRDPEVAEEILAEGKADLVALGRALLAD 317 (327)
T ss_pred EEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHC
T ss_conf 9998998999999999988993125866999979
No 80
>PRK08223 hypothetical protein; Validated
Probab=53.65 E-value=11 Score=19.12 Aligned_cols=121 Identities=9% Similarity=0.018 Sum_probs=74.1
Q ss_pred HHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEE-CCCCCCHHHHHCCCCHH-CCCCCCC--CHHHHHHHHHH
Q ss_conf 99999999729810001210001111000001258730230-24432001320111000-0122222--00134433333
Q gi|254780801|r 39 SKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFI-GSLQSNKVSEIVSLFDV-IETVSRE--KTASLLSLEMI 114 (222)
Q Consensus 39 ~e~I~~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfI-G~LQsNKvk~i~~~~~~-Ihsvds~--~~a~~L~~~~~ 114 (222)
.+.+.-=+-++..++|.++++-+.++..++.. +++..-+ ..|-..-+..++..+|+ |+..|.. ..-..++.+|.
T Consensus 64 lSNLnRQi~~~~~diG~~Kveva~e~l~~INP--~v~V~~~~~~lt~~N~~~~l~~~DvVvDg~DnF~~~tR~ll~~ac~ 141 (287)
T PRK08223 64 LVNSNRQYGAMMSSNGRPKVEVMREIALDINP--ELEIRAFPEGIGKENLDTFLDGVDVYVDGLDFFVFDIRRLLFREAQ 141 (287)
T ss_pred CCCCCHHHCCCHHHCCCCHHHHHHHHHHHHCC--CCEEEEECCCCCHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 34402223447434498589999999998698--9879995878998999999867999997966788318999999999
Q ss_pred HHCCCEEE------EEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEECCC
Q ss_conf 31143036------8897004665634657000122234431043110011101154
Q gi|254780801|r 115 KQSRFLPV------YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP 165 (222)
Q Consensus 115 ~~~~~~~v------liQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMti~p 165 (222)
+.+++.-- ==|+-+= .+.|.+.++..++-+..... ..-++.+|..+|
T Consensus 142 ~~giP~v~~a~l~f~gq~~vF---~P~g~~f~~yf~~~~~~~~~-e~~~~f~~Gl~P 194 (287)
T PRK08223 142 ARGIPALTAAPLGFSTAWLVF---DPGGMSFDRYFDLSDGMNEV-EKAVRFIAGLAP 194 (287)
T ss_pred HHCCCEEEECCCCCCCEEEEE---CCCCCCHHHHCCCCCCCCHH-HHHHHHHCCCCC
T ss_conf 859984983154103069998---89997898845899899879-987754235794
No 81
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=53.05 E-value=7.7 Score=20.24 Aligned_cols=71 Identities=11% Similarity=0.236 Sum_probs=53.6
Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCCCCCCEEE-ECCCCCCHHHHHCCCCHH-CCCCCCCCHHHHHHHHHHHHCCCE
Q ss_conf 2981000121000111100000125873023-024432001320111000-012222200134433333311430
Q gi|254780801|r 48 CGQVIFAENKLQEAKKKWIPLRKEWDVQLRF-IGSLQSNKVSEIVSLFDV-IETVSREKTASLLSLEMIKQSRFL 120 (222)
Q Consensus 48 ~G~~~fGENrvQE~~~K~~~l~~~~~i~wHf-IG~LQsNKvk~i~~~~~~-Ihsvds~~~a~~L~~~~~~~~~~~ 120 (222)
+-..++|.++++-+.++...+.. +++... =..+....+..++..+|+ |...|+...-..|++.+.+.+++.
T Consensus 78 ~~~~diG~~Kv~~a~~~l~~inp--~i~i~~~~~~i~~~n~~~li~~~DlViD~~Dn~~~R~~ln~~c~~~~~P~ 150 (245)
T PRK05690 78 HDDATIGQPKVESAKAALARINP--HIAIETINARLDDDELAALIAAHDLVLDCTDNVATRNQLNAACFAAKKPL 150 (245)
T ss_pred CCHHHCCCCHHHHHHHHHHHHCC--CCCEEEEHHCCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHCCCCE
T ss_conf 59877898879999999997588--75226333144888998875078889987899999999999999719987
No 82
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=52.31 E-value=10 Score=19.48 Aligned_cols=38 Identities=26% Similarity=0.423 Sum_probs=29.9
Q ss_pred EEEEEEECCCCCCCCCCCC--CHHHHHHHHHHCCCCCCHHHHEE
Q ss_conf 3688970046656346570--00122234431043110011101
Q gi|254780801|r 121 PVYIQVNTGYEIQKSGIMP--NQTKDFVILCRQKYQLNVEGLMC 162 (222)
Q Consensus 121 ~vliQVN~~~e~~K~G~~p--~el~~l~~~i~~~~~L~i~GLMt 162 (222)
+|+|=||+ .||.|+.| +.++.+++.... .++.|.|+=|
T Consensus 26 kVlLIVNt---ASkCGfTpQYegLe~Ly~ky~~-~Gf~VLgFPc 65 (162)
T COG0386 26 KVLLIVNT---ASKCGFTPQYEGLEALYKKYKD-KGFEVLGFPC 65 (162)
T ss_pred CEEEEEEC---CCCCCCCHHHHHHHHHHHHHHH-CCCEEEECCC
T ss_conf 68999974---5446886758999999999864-8968993145
No 83
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=51.64 E-value=8.2 Score=20.04 Aligned_cols=72 Identities=13% Similarity=0.243 Sum_probs=51.4
Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHCCCCHH-CCCCCCCCHHHHHHHHHHHHCCCE
Q ss_conf 2981000121000111100000125873023024432001320111000-012222200134433333311430
Q gi|254780801|r 48 CGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDV-IETVSREKTASLLSLEMIKQSRFL 120 (222)
Q Consensus 48 ~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQsNKvk~i~~~~~~-Ihsvds~~~a~~L~~~~~~~~~~~ 120 (222)
+...+.|.++++-+.++...+....+++. +-..+...-+..+++.+|+ |...|+...-..|++.|.+.+++.
T Consensus 67 ~~~~diG~~K~~~a~~~l~~iNp~i~i~~-~~~~i~~~~~~~~~~~~DlVid~~Dn~~~R~~ln~~~~~~~iP~ 139 (228)
T cd00757 67 HTEADVGQPKAEAAAERLRAINPDVEIEA-YNERLDAENAEELIAGYDLVLDCTDNFATRYLINDACVKLGKPL 139 (228)
T ss_pred ECHHHCCCCHHHHHHHHHHHHCCCCCCEE-HHHCCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHCCCCE
T ss_conf 37866878959999999985488753031-32100575699887379899987799889999999999839988
No 84
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=50.30 E-value=22 Score=17.12 Aligned_cols=47 Identities=28% Similarity=0.420 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHCCCCEECCCC---CHHHHHHHHHCCCEEEECHHHCCC
Q ss_conf 05899999998875894722477---734899998089889971132389
Q gi|254780801|r 171 KPHFYLLSEIARECKLTKLSMGM---TRDFELAIASGATSVRIGSGIFGE 217 (222)
Q Consensus 171 ~~~F~~l~~l~~~~~~~~LSmGM---S~D~~~Ai~~Gst~vRiGs~iFG~ 217 (222)
.+.|..+++|.+.++....-=|- -.+...|++.|+..|=|||+|-.|
T Consensus 163 ~PD~~lv~~l~~~~~~pvIaEGri~tPe~a~~a~~~GA~aVVVGsAITrP 212 (219)
T cd04729 163 DPDFELLKELRKALGIPVIAEGRINSPEQAAKALELGADAVVVGSAITRP 212 (219)
T ss_pred CCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCH
T ss_conf 98789999999975993997069899999999998399899989543888
No 85
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=50.04 E-value=22 Score=17.10 Aligned_cols=100 Identities=14% Similarity=0.234 Sum_probs=58.2
Q ss_pred HHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCC--CCCCHH-HHEECCCCCCCCHHHH--HHHHHHHHHCCCCEE
Q ss_conf 31143036889700466563465700012223443104--311001-1101154334520589--999999887589472
Q gi|254780801|r 115 KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK--YQLNVE-GLMCIPPAMGNPKPHF--YLLSEIARECKLTKL 189 (222)
Q Consensus 115 ~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~--~~L~i~-GLMti~p~~~d~~~~F--~~l~~l~~~~~~~~L 189 (222)
..+...+|.+.+|.. |-...|..++|...++..+.+. .-|++. |-+.-... ....+.| ...+.+++....+..
T Consensus 217 ~vg~d~~vgvRis~~-d~~~~g~~~~e~~~~a~~l~~~gvd~i~vs~G~~~~~~~-~~~~~~~~~~~a~~ik~~~~ipvi 294 (336)
T cd02932 217 VWPEDKPLFVRISAT-DWVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQK-IPVGPGYQVPFAERIRQEAGIPVI 294 (336)
T ss_pred HHCCCCCEEEEECCC-CCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC-CCCCCCCCHHHHHHHHHHCCCCEE
T ss_conf 839988706896452-357899899999999999997599789955898776666-777864267999999987898399
Q ss_pred CCCCCH---HHHHHHHHC-CCEEEECHHHCC
Q ss_conf 247773---489999808-988997113238
Q gi|254780801|r 190 SMGMTR---DFELAIASG-ATSVRIGSGIFG 216 (222)
Q Consensus 190 SmGMS~---D~~~Ai~~G-st~vRiGs~iFG 216 (222)
.-|.=. +-+.+|+.| +++|=+|+.+.-
T Consensus 295 ~~G~i~~p~~ae~~l~~G~~DlV~~gR~~ia 325 (336)
T cd02932 295 AVGLITDPEQAEAILESGRADLVALGRELLR 325 (336)
T ss_pred EECCCCCHHHHHHHHHCCCCEEHHHHHHHHH
T ss_conf 9799899999999998799400686799997
No 86
>pfam11399 DUF3192 Protein of unknown function (DUF3192). Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=49.96 E-value=16 Score=18.05 Aligned_cols=43 Identities=23% Similarity=0.364 Sum_probs=27.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCEECCCCCH----------HHHHHHHHCCCEEEE
Q ss_conf 4520589999999887589472247773----------489999808988997
Q gi|254780801|r 168 GNPKPHFYLLSEIARECKLTKLSMGMTR----------DFELAIASGATSVRI 210 (222)
Q Consensus 168 ~d~~~~F~~l~~l~~~~~~~~LSmGMS~----------D~~~Ai~~Gst~vRi 210 (222)
++|.....+-++..++-.+..||+|||- ||-.|-..+-..++|
T Consensus 10 ~~~~~~~Wedrq~~Nr~~i~~L~lg~s~~~V~~~lG~aDfsEa~~~~~~~~qV 62 (102)
T pfam11399 10 GDPDDMDWEDRQAYNRQKIAKLSLGQSKDQVLTLLGTADFSEAKTKDDKQYQV 62 (102)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHCCCCEEEE
T ss_conf 99442668999999999887535689699999983898638884238968999
No 87
>TIGR00762 DegV degV family protein; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function..
Probab=49.50 E-value=14 Score=18.50 Aligned_cols=76 Identities=18% Similarity=0.166 Sum_probs=37.0
Q ss_pred EEEEEECCCCCCC-CCCC--CCHHHHHHHHHHCCCCCCHHHHEECCCCCCCCHHHHHHHH--HHHHHCCCCEECC--CCC
Q ss_conf 6889700466563-4657--0001222344310431100111011543345205899999--9988758947224--777
Q gi|254780801|r 122 VYIQVNTGYEIQK-SGIM--PNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS--EIARECKLTKLSM--GMT 194 (222)
Q Consensus 122 vliQVN~~~e~~K-~G~~--p~el~~l~~~i~~~~~L~i~GLMti~p~~~d~~~~F~~l~--~l~~~~~~~~LSm--GMS 194 (222)
+=|||-..++... .|+. |+.+.+.++.-.+.||+ -|-+|..++-...|.... +-.|..-.-+||= |.|
T Consensus 24 ~PL~V~~~g~~~~rd~~~l~~~~~~~~~~~~~~~pNi-----~Ts~p~~~~~~~~y~~~~a~~~~D~v~~lhlSsGs~LS 98 (300)
T TIGR00762 24 LPLQVLLEGQDYERDGVELDPDQLYELIRENGEGPNI-----STSQPSPEELKAVYEQALADEKYDEVLSLHLSSGSGLS 98 (300)
T ss_pred EEEEEEECCEEECCCCCCCCHHHHHHHHHHCCCCCCE-----EECCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCC
T ss_conf 7769997581435765426889999999847998713-----66689989999999997210569848999842777766
Q ss_pred HHHHHHHH
Q ss_conf 34899998
Q gi|254780801|r 195 RDFELAIA 202 (222)
Q Consensus 195 ~D~~~Ai~ 202 (222)
+-|..|..
T Consensus 99 GTf~~a~~ 106 (300)
T TIGR00762 99 GTFDSAVL 106 (300)
T ss_pred HHHHHHHH
T ss_conf 43899999
No 88
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=49.11 E-value=23 Score=17.00 Aligned_cols=93 Identities=18% Similarity=0.185 Sum_probs=50.8
Q ss_pred EEEEEEECCCCCCCCCCCCCHHHHHHHHHHCC--CCCCHH--HHEECCCCCCCCHHHHHHHHHHHHHC--CCCEECCCC-
Q ss_conf 36889700466563465700012223443104--311001--11011543345205899999998875--894722477-
Q gi|254780801|r 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK--YQLNVE--GLMCIPPAMGNPKPHFYLLSEIAREC--KLTKLSMGM- 193 (222)
Q Consensus 121 ~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~--~~L~i~--GLMti~p~~~d~~~~F~~l~~l~~~~--~~~~LSmGM- 193 (222)
.|-+-++. .|....|++++|...++..+.+. .-|++. +....++........+. ..+.+.. +.+.+.-|.
T Consensus 217 ~vgvRis~-~e~~~~G~~~~e~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~iPvi~~G~i 293 (353)
T cd04735 217 ILGYRFSP-EEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIM--ELVKERIAGRLPLIAVGSI 293 (353)
T ss_pred EEEEECCH-HHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHH--HHHHHHHCCCCCEEEECCC
T ss_conf 36751586-54147999999999999999847998899603776677766777535589--9999996789809998999
Q ss_pred --CHHHHHHHHHCCCEEEECHHHCC
Q ss_conf --73489999808988997113238
Q gi|254780801|r 194 --TRDFELAIASGATSVRIGSGIFG 216 (222)
Q Consensus 194 --S~D~~~Ai~~Gst~vRiGs~iFG 216 (222)
-.+.+.+|++|+++|=+|+.+.-
T Consensus 294 ~~~~~ae~~l~~gaD~V~~gR~lia 318 (353)
T cd04735 294 NTPDDALEALETGADLVAIGRGLLV 318 (353)
T ss_pred CCHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 9899999999869982998699997
No 89
>PRK11170 nagA N-acetylglucosamine-6-phosphate deacetylase; Provisional
Probab=48.98 E-value=23 Score=16.99 Aligned_cols=77 Identities=14% Similarity=0.211 Sum_probs=41.3
Q ss_pred EEEECCC---CCCCCCCCCCHH-----HHHHHHHHCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHCCCCEECCCCCH
Q ss_conf 8970046---656346570001-----22234431043110011101154334520589999999887589472247773
Q gi|254780801|r 124 IQVNTGY---EIQKSGIMPNQT-----KDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTR 195 (222)
Q Consensus 124 iQVN~~~---e~~K~G~~p~el-----~~l~~~i~~~~~L~i~GLMti~p~~~d~~~~F~~l~~l~~~~~~~~LSmGMS~ 195 (222)
+=+++-| .+.|-|..+.+. .++++.+.+..+ ..-+||++|...+. ...+.|.+. + -..|+|=|+
T Consensus 126 lGiHlEGPfis~~k~Gah~~~~i~~p~~e~~~~l~~~~~--~i~~vTlAPE~~~~----e~i~~l~~~-G-I~vs~GHS~ 197 (381)
T PRK11170 126 LGLHLEGPYLNLVKKGTHNPEFIRKPDAEMVDFLCENAD--VITKVTLAPEMVDA----EVISKLVKA-G-IVVSAGHSN 197 (381)
T ss_pred EEEECCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHCCC--CEEEEEECCCCCCH----HHHHHHHHC-C-CEEEEECCC
T ss_conf 689752585685557889978837989999999985169--75799978888888----999999988-9-989885588
Q ss_pred ----HHHHHHHHCCCEE
Q ss_conf ----4899998089889
Q gi|254780801|r 196 ----DFELAIASGATSV 208 (222)
Q Consensus 196 ----D~~~Ai~~Gst~v 208 (222)
+...|++.|++++
T Consensus 198 A~y~~~~~A~~~Ga~~~ 214 (381)
T PRK11170 198 ATYKEAKAGFRAGITFA 214 (381)
T ss_pred CCHHHHHHHHHCCCCEE
T ss_conf 99999999998699861
No 90
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=48.07 E-value=24 Score=16.90 Aligned_cols=109 Identities=21% Similarity=0.231 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHCCCEEEEEEEECCCC---CCCC----CCCCCHHHHHHHHHHC-CCCCCHHH-----HEECC-CCCCC-
Q ss_conf 013443333331143036889700466---5634----6570001222344310-43110011-----10115-43345-
Q gi|254780801|r 105 TASLLSLEMIKQSRFLPVYIQVNTGYE---IQKS----GIMPNQTKDFVILCRQ-KYQLNVEG-----LMCIP-PAMGN- 169 (222)
Q Consensus 105 ~a~~L~~~~~~~~~~~~vliQVN~~~e---~~K~----G~~p~el~~l~~~i~~-~~~L~i~G-----LMti~-p~~~d- 169 (222)
.++++..+|.+.+ ++.||++=+=.. ..++ -..|+-+.+.+++... -.++.+-= =|-.- .+.++
T Consensus 146 ~verig~eC~~~d--ipf~lE~l~Y~~~~~d~~~~eyak~Kp~~V~~a~kefs~~~ygvDvlKvE~Pvn~~~veg~~~~~ 223 (340)
T PRK12858 146 FVERVGAECRAND--IPFFLELLTYDFKISDKKSEEFAKVKPELVIATMKEFSKPRYGVDVLKVEVPVDMKFVEGRDGFA 223 (340)
T ss_pred HHHHHHHHHHHCC--CCEEEEEEECCCCCCCCCCHHHHHHCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCC
T ss_conf 9999999998779--98078874016888876579899867388999999863766698679962666612022456753
Q ss_pred ----CHHHHHHHHHHHH--HCCCCEECCCCCHH-----HHHHHHHCC--CEEEECHHHC
Q ss_conf ----2058999999988--75894722477734-----899998089--8899711323
Q gi|254780801|r 170 ----PKPHFYLLSEIAR--ECKLTKLSMGMTRD-----FELAIASGA--TSVRIGSGIF 215 (222)
Q Consensus 170 ----~~~~F~~l~~l~~--~~~~~~LSmGMS~D-----~~~Ai~~Gs--t~vRiGs~iF 215 (222)
..+.+..++++.+ .+.+-.||-|||.| .++|-+.|| .=+=-|++++
T Consensus 224 ~~yt~~ea~~~fk~~~~a~~~Pwv~LSAGV~~~~F~~~l~~A~~aGa~fsG~L~GRA~W 282 (340)
T PRK12858 224 AAYTQEEAFKLFREQSDATPLPFIFLSAGVTPELFLRELEFAKQAGADFNGVLCGRATW 282 (340)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEECHHHH
T ss_conf 21359999999999973549997998189998999999999998599723553457877
No 91
>PRK07329 hypothetical protein; Provisional
Probab=48.01 E-value=24 Score=16.89 Aligned_cols=101 Identities=14% Similarity=0.140 Sum_probs=54.2
Q ss_pred CEEEECCCCCCHHHHHCCCCHHC-CCCCC-CCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCC-CCCHHHHHHHHHHC
Q ss_conf 30230244320013201110000-12222-20013443333331143036889700466563465-70001222344310
Q gi|254780801|r 75 QLRFIGSLQSNKVSEIVSLFDVI-ETVSR-EKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-MPNQTKDFVILCRQ 151 (222)
Q Consensus 75 ~wHfIG~LQsNKvk~i~~~~~~I-hsvds-~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~-~p~el~~l~~~i~~ 151 (222)
.++.+|||- ++++.++.- ...+. ..+.+++-+...+. ..-|+|||++= .|.+- .|- ...+....+
T Consensus 139 ~fdvlgHlD-----~~~R~~~~~~~~~~~~~~~i~~ilk~li~~----g~~iEiNTsgl-~~~~~~~~~--~~~l~~y~~ 206 (246)
T PRK07329 139 DADVLAHFD-----YGFRLFDLTVDELKAFEKQLKRIFKKMIDN----DLAFELNTKSM-YLYGNEGLY--RYAIELYKK 206 (246)
T ss_pred CCEEEECCC-----HHHHCCCCCCCCHHHHHHHHHHHHHHHHHC----CCEEEEECCCC-CCCCCCCCC--HHHHHHHHH
T ss_conf 911831757-----887648888640788899999999999982----98999988666-678877788--899999999
Q ss_pred CCCCCHHHHEECCCCCCCC---HHHHHHHHHHHHHCCCCEECC
Q ss_conf 4311001110115433452---058999999988758947224
Q gi|254780801|r 152 KYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECKLTKLSM 191 (222)
Q Consensus 152 ~~~L~i~GLMti~p~~~d~---~~~F~~l~~l~~~~~~~~LSm 191 (222)
+-+. ..|+|+..-.| ...|....++.+++++++++|
T Consensus 207 lgG~----~iTiGSDAH~pe~vg~~f~~a~~lLk~~Gf~~iav 245 (246)
T PRK07329 207 LGGK----LFSIGSDAHKLEHYRYNFDDAQKLLKSHGIKEIAL 245 (246)
T ss_pred HCCE----EEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 6990----89984698998999977999999999849926873
No 92
>TIGR01163 rpe ribulose-phosphate 3-epimerase; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Alcaligenes eutrophus two copies of the gene coding for PPE are known , one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process.
Probab=48.00 E-value=9.7 Score=19.55 Aligned_cols=87 Identities=22% Similarity=0.321 Sum_probs=51.4
Q ss_pred CCCC--CCCHHHHHHHHHHCCCCCCHHHHEECCC-CCCCC--HHHHHHHHHHHHH-----CCC---CEECCCCCHH-HHH
Q ss_conf 3465--7000122234431043110011101154-33452--0589999999887-----589---4722477734-899
Q gi|254780801|r 134 KSGI--MPNQTKDFVILCRQKYQLNVEGLMCIPP-AMGNP--KPHFYLLSEIARE-----CKL---TKLSMGMTRD-FEL 199 (222)
Q Consensus 134 K~G~--~p~el~~l~~~i~~~~~L~i~GLMti~p-~~~d~--~~~F~~l~~l~~~-----~~~---~~LSmGMS~D-~~~ 199 (222)
|.|+ +|.-=.++++.+ ++.+.+.=||.+-| +.+.. -....+.|++++- .+. -|-==|--.| =..
T Consensus 108 ~AG~v~NP~TPl~~~~~~--L~~~D~VLlMSVnPGFgGQkFIP~~~~Kir~~R~~id~~~~~~~~~ieVDGGv~~~ni~~ 185 (216)
T TIGR01163 108 KAGIVLNPATPLEALEYV--LEDVDLVLLMSVNPGFGGQKFIPETLEKIRELRKMIDKLELGLSILIEVDGGVNEDNIAE 185 (216)
T ss_pred CEEEEECCCCCHHHHHHH--HHHCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHH
T ss_conf 706886799998789989--876298998876079988411057899999999999860279955899717989767999
Q ss_pred HHHHCCCEEEECHHHCCCC--CCCC
Q ss_conf 9980898899711323899--9998
Q gi|254780801|r 200 AIASGATSVRIGSGIFGER--PCQT 222 (222)
Q Consensus 200 Ai~~Gst~vRiGs~iFG~R--~~~t 222 (222)
..+.|||.+=-||+|||.- +|++
T Consensus 186 ~~~AGAD~~VaGSaiF~~~s~d~~~ 210 (216)
T TIGR01163 186 VAEAGADILVAGSAIFGADSLDYKE 210 (216)
T ss_pred HHHCCCCEEEEEEEEECCCCCCHHH
T ss_conf 9975898999831020888668799
No 93
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=47.99 E-value=20 Score=17.48 Aligned_cols=44 Identities=18% Similarity=0.250 Sum_probs=31.7
Q ss_pred HHHHHHHHHHH--HCCCCEECCCCCHH-----HHHHHHHCCC--EEEECHHHC
Q ss_conf 58999999988--75894722477734-----8999980898--899711323
Q gi|254780801|r 172 PHFYLLSEIAR--ECKLTKLSMGMTRD-----FELAIASGAT--SVRIGSGIF 215 (222)
Q Consensus 172 ~~F~~l~~l~~--~~~~~~LSmGMS~D-----~~~Ai~~Gst--~vRiGs~iF 215 (222)
+....++++.+ .+.+-.||-|||.| .++|-+.||+ =+=-|++++
T Consensus 229 ea~~~fk~~~~a~~~Pwv~LSAGV~~~~F~~~l~~A~~aGasf~G~L~GRA~W 281 (326)
T PRK04161 229 EAIKAFKDQEAATHLPYIYLSAGVSAKLFQETLYFAAEAGAQFNGVLCGRATW 281 (326)
T ss_pred HHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEECHHHH
T ss_conf 99999999873539997998399998999999999998699845676536877
No 94
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=47.55 E-value=25 Score=16.84 Aligned_cols=116 Identities=16% Similarity=0.164 Sum_probs=61.3
Q ss_pred CCCCHHHHHHHHH-HHHCCCEEEEEEEECCC-------------CCCCCCCCCCHHHHHHHHHHC--CCCCCHHH-----
Q ss_conf 2220013443333-33114303688970046-------------656346570001222344310--43110011-----
Q gi|254780801|r 101 SREKTASLLSLEM-IKQSRFLPVYIQVNTGY-------------EIQKSGIMPNQTKDFVILCRQ--KYQLNVEG----- 159 (222)
Q Consensus 101 ds~~~a~~L~~~~-~~~~~~~~vliQVN~~~-------------e~~K~G~~p~el~~l~~~i~~--~~~L~i~G----- 159 (222)
.|.+++.++-++. +..+...+|.+.++... |-...|...+|...+++.+.+ ..-|.+.+
T Consensus 199 nR~Rf~~Evi~aVR~~vg~d~~v~~R~s~~~~~~~~~~g~~~~~~~~~~g~~l~e~~~~~~~l~~~G~D~l~vs~g~~~~ 278 (382)
T cd02931 199 NRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDA 278 (382)
T ss_pred HHCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCC
T ss_conf 85618999999999970988738999656334566545788577788876359999999999998398889647774211
Q ss_pred -HEECCCCCCCCHHHHHHHHHHHHHCCCCEECCCCCH---HHHHHHHHC-CCEEEECHHHCC
Q ss_conf -101154334520589999999887589472247773---489999808-988997113238
Q gi|254780801|r 160 -LMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTR---DFELAIASG-ATSVRIGSGIFG 216 (222)
Q Consensus 160 -LMti~p~~~d~~~~F~~l~~l~~~~~~~~LSmGMS~---D~~~Ai~~G-st~vRiGs~iFG 216 (222)
.++.+|....+.-.-...+.+++....+.+.-|+=. +.+.+|++| +.+|=+|+.+.-
T Consensus 279 ~~~~~~~~~~~~g~~~~~a~~ik~~~~iPvi~~G~i~~p~~ae~~l~~g~aD~V~~gR~~ia 340 (382)
T cd02931 279 WYWNHPPMYQKKGMYLPYCKALKEVVDVPVIMAGRMEDPELASEAINEGIADMISLGRPLLA 340 (382)
T ss_pred HHCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 01037975467631489999999873998899689699999999998699654362289886
No 95
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=47.37 E-value=23 Score=17.05 Aligned_cols=41 Identities=20% Similarity=0.156 Sum_probs=32.9
Q ss_pred HHHHHHHHHCCCCEECCCCCHHHHHHHHH---CCCEEEECHHHC
Q ss_conf 99999988758947224777348999980---898899711323
Q gi|254780801|r 175 YLLSEIARECKLTKLSMGMTRDFELAIAS---GATSVRIGSGIF 215 (222)
Q Consensus 175 ~~l~~l~~~~~~~~LSmGMS~D~~~Ai~~---Gst~vRiGs~iF 215 (222)
+....++....++..-+|==.+++.|+|. ||+.|-|||++|
T Consensus 229 r~v~~v~~~~~ipIiG~GGI~sg~DaiE~ilAGAsaVQv~Ta~~ 272 (333)
T PRK07565 229 RWIAILSGRVGADLAATTGVHDAEDVIKMLLAGADVVMIASALL 272 (333)
T ss_pred HHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCHHEEEHHHH
T ss_conf 99999960469898888895989999999980988633622366
No 96
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=46.54 E-value=15 Score=18.30 Aligned_cols=69 Identities=12% Similarity=0.166 Sum_probs=48.5
Q ss_pred CCCCCCCCCHHHHHHHHCCCCCCCCCEEEE-CCCCCCHHHHHCCCCHH-CCCCCCCCHHHHHHHHHHHHCCCE
Q ss_conf 810001210001111000001258730230-24432001320111000-012222200134433333311430
Q gi|254780801|r 50 QVIFAENKLQEAKKKWIPLRKEWDVQLRFI-GSLQSNKVSEIVSLFDV-IETVSREKTASLLSLEMIKQSRFL 120 (222)
Q Consensus 50 ~~~fGENrvQE~~~K~~~l~~~~~i~wHfI-G~LQsNKvk~i~~~~~~-Ihsvds~~~a~~L~~~~~~~~~~~ 120 (222)
..++|.++++-+.++...+.. +++++-+ ..+..-.....++.+|+ |.++|+...-..|++.+.+.+++.
T Consensus 47 ~~dvG~~Ka~~a~~~l~~~np--~v~i~~~~~~~~~~~~~~~~~~~dvvi~~~D~~~~r~~l~~~~~~~~ip~ 117 (143)
T cd01483 47 QADIGKPKAEVAARRLNELNP--GVNVTAVPEGISEDNLDDFLDGVDLVIDAIDNIAVRRALNRACKELGIPV 117 (143)
T ss_pred HHHHCCHHHHHHHHHHHHHCC--CCEEEEEECCCCHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCE
T ss_conf 889492248999999985689--83899994568964699997599999987799999999999999869988
No 97
>PRK07328 histidinol-phosphatase; Provisional
Probab=46.30 E-value=26 Score=16.72 Aligned_cols=74 Identities=11% Similarity=0.129 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCC---CCCHHHHHHHHHHCCCCCCHHHHEECCCCCCCC---HHHHHHH
Q ss_conf 0013443333331143036889700466563465---700012223443104311001110115433452---0589999
Q gi|254780801|r 104 KTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI---MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177 (222)
Q Consensus 104 ~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~---~p~el~~l~~~i~~~~~L~i~GLMti~p~~~d~---~~~F~~l 177 (222)
.+.+++-+.+.+. .+.|+||+++- +.|+ .|. .++++.+.++ ++. .|+++..-.+ ...|...
T Consensus 176 ~~~~~il~~~~~~----g~~lEiNt~gl--r~~~~e~yP~--~~il~~~~~~-G~~----it~gSDAH~~~~vg~~f~~a 242 (268)
T PRK07328 176 ELYEPALDVIARA----GLCLDVNTAGL--RKPAAEVYPA--PALLRAARER-GIP----VVLGSDAHRPEEVGFGFAEA 242 (268)
T ss_pred HHHHHHHHHHHHC----CCEEEEECCCC--CCCCCCCCCH--HHHHHHHHHC-CCE----EEEECCCCCHHHHHHHHHHH
T ss_conf 9999999999972----97799877867--7888888862--9999999987-997----99905989888988689999
Q ss_pred HHHHHHCCCCEEC
Q ss_conf 9998875894722
Q gi|254780801|r 178 SEIARECKLTKLS 190 (222)
Q Consensus 178 ~~l~~~~~~~~LS 190 (222)
.++.+++++++++
T Consensus 243 ~~~lk~~Gf~~~~ 255 (268)
T PRK07328 243 VALLKEAGYREVA 255 (268)
T ss_pred HHHHHHCCCCEEE
T ss_conf 9999986998899
No 98
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=44.77 E-value=14 Score=18.45 Aligned_cols=74 Identities=15% Similarity=0.096 Sum_probs=53.4
Q ss_pred HHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECC-CCC--CHHHHHCCCCHH-CCCCCCCCHHHHHHHHHHHHCCCE
Q ss_conf 9972981000121000111100000125873023024-432--001320111000-012222200134433333311430
Q gi|254780801|r 45 ALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGS-LQS--NKVSEIVSLFDV-IETVSREKTASLLSLEMIKQSRFL 120 (222)
Q Consensus 45 ~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~-LQs--NKvk~i~~~~~~-Ihsvds~~~a~~L~~~~~~~~~~~ 120 (222)
+|.....+.|.+++.-+.++..++.. +++...+-. ... ..+..+++.+|+ |.+.|+...--.|+..|.+.+++.
T Consensus 64 l~~~~~~diG~~Ka~~a~~~l~~lNp--~v~i~~~~~~~~~~~~n~~~~~~~~DlVvd~~dn~~~r~~in~~c~~~~iPl 141 (198)
T cd01485 64 FLDAEVSNSGMNRAAASYEFLQELNP--NVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEENYERTAKVNDVCRKHHIPF 141 (198)
T ss_pred EECCCCCCCCCCHHHHHHHHHHHHCC--CCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCE
T ss_conf 02654111687299999999997799--9779998224457786899998489999999999999999999999929988
No 99
>TIGR00587 nfo apurinic endonuclease (APN1); InterPro: IPR001719 DNA damaging agents such as the anti-tumour drugs bleomycin and neocarzinostatin or those that generate oxygen radicals produce a variety of lesions in DNA. Amongst these is base-loss which forms apurinic/apyrimidinic (AP) sites or strand breaks with atypical 3' termini. DNA repair at the AP sites is initiated by specific endonuclease cleavage of the phosphodiester backbone. Such endonucleases are also generally capable of removing blocking groups from the 3' terminus of DNA strand breaks. AP endonucleases can be classified into two families based on sequence similarity. Family 2 groups the enzymes listed below , . Bacterial endonuclease IV (3.1.21.2 from EC) (gene nfo). Mycobacterium leprae probable endonuclease (gene end) . Yeast apurinic endonuclease APN1 (4.2.99.18 from EC). Caenorhabditis elegans hypothetical protein APN-1 or T05H10.2. Escherichia coli endonuclease IV and its Saccharomyces cerevisiae homologue Apn1 have been shown to be transition metalloproteins that require zinc and manganese for activity .; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0006281 DNA repair, 0005622 intracellular.
Probab=44.41 E-value=24 Score=16.95 Aligned_cols=85 Identities=13% Similarity=0.056 Sum_probs=55.1
Q ss_pred CHHHHHHHHHHHHCC--CEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEE---C-CCCCCCCHHHHHH-
Q ss_conf 001344333333114--30368897004665634657000122234431043110011101---1-5433452058999-
Q gi|254780801|r 104 KTASLLSLEMIKQSR--FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC---I-PPAMGNPKPHFYL- 176 (222)
Q Consensus 104 ~~a~~L~~~~~~~~~--~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMt---i-~p~~~d~~~~F~~- 176 (222)
++|+-|+....+... ++-|+|+ |++|.-+.-|-+.+||..++..+...+.|.|+ |=| - +-++-.+.+.|..
T Consensus 152 ~~i~~ln~v~~~t~~n~~v~i~LE-tmAG~Gn~~G~~f~eLk~iI~~i~~~~r~GVC-lDTCH~FAaGYDI~T~~~~~~v 229 (318)
T TIGR00587 152 NLIESLNEVIEETKNNKFVIIVLE-TMAGQGNEIGRSFEELKYIIDGIKDKSRIGVC-LDTCHTFAAGYDIRTVEDFEKV 229 (318)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEE-CCCCCCCCCCCCHHHHHHHHHHHEECCCEEEE-CCHHHHHHCCCCCCCHHHHHHH
T ss_conf 999999998653169982899970-66875667788889999998532004730452-2222041214677777779999
Q ss_pred HHHHHHHCCCCEEC
Q ss_conf 99998875894722
Q gi|254780801|r 177 LSEIARECKLTKLS 190 (222)
Q Consensus 177 l~~l~~~~~~~~LS 190 (222)
++++.+.+++..|+
T Consensus 230 ~~~f~~~vG~~ylk 243 (318)
T TIGR00587 230 LKEFDKVVGFKYLK 243 (318)
T ss_pred HHHHHHHCCCEEEE
T ss_conf 98772201510033
No 100
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=42.66 E-value=29 Score=16.35 Aligned_cols=102 Identities=12% Similarity=0.120 Sum_probs=61.4
Q ss_pred HHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCC--CCCCHHHHE--E-CCCC-CCCCHHHHHHH-HHHHHHCCC
Q ss_conf 331143036889700466563465700012223443104--311001110--1-1543-34520589999-999887589
Q gi|254780801|r 114 IKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK--YQLNVEGLM--C-IPPA-MGNPKPHFYLL-SEIARECKL 186 (222)
Q Consensus 114 ~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~--~~L~i~GLM--t-i~p~-~~d~~~~F~~l-~~l~~~~~~ 186 (222)
...+...+|.+-+|.. |.-..|.+++|..+++..+... .-+++-+-. . ++.. ..-++..|..+ +.+++.+..
T Consensus 199 ~~vg~d~~v~~Ris~~-d~~~~G~~~~e~~~~~~~l~~~GvD~i~vs~G~~~~~~~~~~~~~p~g~~~~~a~~ir~~~~~ 277 (353)
T cd02930 199 AAVGEDFIIIYRLSML-DLVEGGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVDI 277 (353)
T ss_pred HHHCCCCEEEEECCCC-CCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 9709987499973601-268999899999999999998199999963774446687533457723669999998875483
Q ss_pred CEECCCCC---HHHHHHHHHC-CCEEEECHHHCC
Q ss_conf 47224777---3489999808-988997113238
Q gi|254780801|r 187 TKLSMGMT---RDFELAIASG-ATSVRIGSGIFG 216 (222)
Q Consensus 187 ~~LSmGMS---~D~~~Ai~~G-st~vRiGs~iFG 216 (222)
+.+.-|.= ...+.+|++| +++|=+|+.+.=
T Consensus 278 Pvi~~G~i~~p~~ae~~l~~g~aD~V~~gR~lia 311 (353)
T cd02930 278 PVIASNRINTPEVAERLLADGDADMVSMARPFLA 311 (353)
T ss_pred CEEECCCCCCHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 4896599798999999998799624784099876
No 101
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=41.82 E-value=30 Score=16.27 Aligned_cols=96 Identities=11% Similarity=0.256 Sum_probs=57.1
Q ss_pred EEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCC--CCCCHHHHEECCC-CCCCCHHHHHHHHHHHHHCCCCEECCCCCH-
Q ss_conf 036889700466563465700012223443104--3110011101154-334520589999999887589472247773-
Q gi|254780801|r 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK--YQLNVEGLMCIPP-AMGNPKPHFYLLSEIARECKLTKLSMGMTR- 195 (222)
Q Consensus 120 ~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~--~~L~i~GLMti~p-~~~d~~~~F~~l~~l~~~~~~~~LSmGMS~- 195 (222)
-++++-++.. |-...|+.++|...++..+.+. .-|++-+-..++. ....+.-.......+++....+...-|.=.
T Consensus 208 ~~v~vRis~~-d~~~gG~~~~d~~~~~~~l~~~GvD~i~vs~G~~~~~~~~~~~g~~~~~a~~ik~~~~ipvi~vG~i~~ 286 (337)
T PRK13523 208 GPLFVRISAS-DYHPDGLTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIKEHANIATGAVGLITT 286 (337)
T ss_pred CCEEEEECCC-CCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 8639993365-557899898999999999997499989957885547767778753348999999876970999838699
Q ss_pred --HHHHHHHHC-CCEEEECHHHCC
Q ss_conf --489999808-988997113238
Q gi|254780801|r 196 --DFELAIASG-ATSVRIGSGIFG 216 (222)
Q Consensus 196 --D~~~Ai~~G-st~vRiGs~iFG 216 (222)
+-+.+|++| +.+|=+|+.+.-
T Consensus 287 ~~~ae~~l~~G~aD~V~~gR~~ia 310 (337)
T PRK13523 287 GAQAEEILNNNRADLIFIGRELLR 310 (337)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 999999998799479998999998
No 102
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=41.09 E-value=31 Score=16.19 Aligned_cols=41 Identities=24% Similarity=0.280 Sum_probs=25.8
Q ss_pred HHHHHHHHHC--CCCEECCCCCH---HHHHHHHHCCCEEEECHHHC
Q ss_conf 9999998875--89472247773---48999980898899711323
Q gi|254780801|r 175 YLLSEIAREC--KLTKLSMGMTR---DFELAIASGATSVRIGSGIF 215 (222)
Q Consensus 175 ~~l~~l~~~~--~~~~LSmGMS~---D~~~Ai~~Gst~vRiGs~iF 215 (222)
...+.+++.. .+.....|==. |....|..||+.|-|+|+++
T Consensus 240 ~~v~~i~~~~~~~i~Iig~GGI~s~~Da~e~i~aGAs~Vqv~Tal~ 285 (299)
T cd02940 240 RAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQVCTAVM 285 (299)
T ss_pred HHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 9999999964899778998995999999999984998999989999
No 103
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=40.59 E-value=31 Score=16.14 Aligned_cols=70 Identities=17% Similarity=0.313 Sum_probs=48.4
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHCCCCEECCCC------CHHHHHHHHHCC
Q ss_conf 346570001222344310431100111011543345205899999998875894722477------734899998089
Q gi|254780801|r 134 KSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGM------TRDFELAIASGA 205 (222)
Q Consensus 134 K~G~~p~el~~l~~~i~~~~~L~i~GLMti~p~~~d~~~~F~~l~~l~~~~~~~~LSmGM------S~D~~~Ai~~Gs 205 (222)
|=|+..++..+.++.+++. +|.+.|.+.+|-. .++.+.+..+-+++.+++.+..++.+ |.=|+.|.++|-
T Consensus 317 ~K~~t~e~~~~av~~~k~~-GI~v~~~FIiG~P-gET~Eti~~Ti~fa~~l~~d~~~~si~tPyPGT~ly~~~~e~g~ 392 (472)
T TIGR03471 317 KKGLTVEIARRFTRDCHKL-GIKVHGTFILGLP-GETRETIRKTIDFAKELNPHTIQVSLAAPYPGTELYDQAKQNGW 392 (472)
T ss_pred CCCCCHHHHHHHHHHHHHC-CCEEEEEEEECCC-CCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHCCC
T ss_conf 3899899999999988757-9879999987799-99889999999999975989089987258899699999998398
No 104
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=39.59 E-value=27 Score=16.55 Aligned_cols=39 Identities=10% Similarity=0.141 Sum_probs=30.6
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 1430368897004665634657000122234431043110
Q gi|254780801|r 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLN 156 (222)
Q Consensus 117 ~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~ 156 (222)
...+.++|+ |+++..+.-|-.++++.++++.+...+++.
T Consensus 134 ~~~v~l~lE-n~ag~g~~~g~~~eel~~i~~~~~~~~~~g 172 (279)
T cd00019 134 TKGVVIALE-TMAGQGNEIGSSFEELKEIIDLIKEKPRVG 172 (279)
T ss_pred CCCCEEEEE-CCCCCCCCHHCCHHHHHHHHHHCCCCCCEE
T ss_conf 578579983-489877622117999999998456877648
No 105
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=38.53 E-value=21 Score=17.31 Aligned_cols=70 Identities=10% Similarity=0.200 Sum_probs=52.7
Q ss_pred CCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHCCCCHH-CCCCCCCCHHHHHHHHHHH-HCCCE
Q ss_conf 81000121000111100000125873023024432001320111000-0122222001344333333-11430
Q gi|254780801|r 50 QVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDV-IETVSREKTASLLSLEMIK-QSRFL 120 (222)
Q Consensus 50 ~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQsNKvk~i~~~~~~-Ihsvds~~~a~~L~~~~~~-~~~~~ 120 (222)
..+.|.++++-+.++...+....+|+ -+-..|....+..+++.+|+ ++..|+...-..|++.+.+ .++++
T Consensus 74 ~~diG~~Ka~~a~~~l~~iNp~v~I~-~~~~~l~~~n~~~l~~~~DiViDctDN~~tR~li~~~c~~~~~~pl 145 (209)
T PRK08644 74 ISQIGMFKVEALKENLLRINPFVKIE-VHQVKIDEDNIEELFKDCDIVVEAFDNAETKAMLVETVLEKKGKKV 145 (209)
T ss_pred HHHCCCCHHHHHHHHHHHHCCCEEEE-EEECCCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 87759756999999987448982899-9722489899999985799999999999999999999999779968
No 106
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase; InterPro: IPR010237 This family of proteins includes the SDT1/SSM1 gene from yeast, which has been shown to code for a pyrimidine (UMP/CMP) 5'nucleotidase. The family spans plants, fungi and bacteria. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily..
Probab=37.80 E-value=9.2 Score=19.72 Aligned_cols=35 Identities=14% Similarity=0.214 Sum_probs=29.7
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCHHHHEECCCC
Q ss_conf 56346570001222344310431100111011543
Q gi|254780801|r 132 IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA 166 (222)
Q Consensus 132 ~~K~G~~p~el~~l~~~i~~~~~L~i~GLMti~p~ 166 (222)
.+|-|+++||+..+=+..-...+.-++|||++++.
T Consensus 31 ~~~L~l~~eeA~~L~~~yY~~YG~tl~GL~~~gh~ 65 (205)
T TIGR01993 31 AAKLKLSEEEARKLRKDYYKEYGTTLAGLMILGHE 65 (205)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 98708998899999999878575899999985799
No 107
>pfam00218 IGPS Indole-3-glycerol phosphate synthase.
Probab=36.95 E-value=35 Score=15.77 Aligned_cols=172 Identities=16% Similarity=0.151 Sum_probs=80.1
Q ss_pred HHHCEEEEECCCC-----------CHHHHHHHHHCC-C---------CCCCCCC--CHHHHHHHHCCCCCCCCCEE-EEC
Q ss_conf 6441899871899-----------999999999729-8---------1000121--00011110000012587302-302
Q gi|254780801|r 25 KDSVSLVAVSKMV-----------DSKKIRVALSCG-Q---------VIFAENK--LQEAKKKWIPLRKEWDVQLR-FIG 80 (222)
Q Consensus 25 ~~~v~LiaVtK~~-----------~~e~I~~~~~~G-~---------~~fGENr--vQE~~~K~~~l~~~~~i~wH-fIG 80 (222)
.+.+.+||=-|.. ++.++...|+.| . +.||=+. .++.+. ...+| =++-. +|-
T Consensus 45 ~~~~~iIAEiKraSPS~G~i~~~~dp~~iA~~Y~~~GA~aiSVLTd~~~F~Gs~~~L~~vr~-~v~lP---iLrKDFIid 120 (254)
T pfam00218 45 RGRPALIAEVKKASPSKGLIREDFDPAEIARAYEAAGASAISVLTEPKYFQGSLEYLREVRE-AVSLP---VLRKDFIID 120 (254)
T ss_pred CCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHH-HCCCC---EECCHHEEE
T ss_conf 99953898772689999986898999999999997798379984267867987999999998-64885---111410465
Q ss_pred CCCCCHHHHH-CCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHH
Q ss_conf 4432001320-111000012222200134433333311430368897004665634657000122234431043110011
Q gi|254780801|r 81 SLQSNKVSEI-VSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEG 159 (222)
Q Consensus 81 ~LQsNKvk~i-~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~G 159 (222)
+.|=--.+.. +..+=+|-++=+.+.+..+...+...+ +++|++|+.-.| +...++.-..+-+++=|-
T Consensus 121 ~yQI~ear~~GADaiLLI~~~L~~~~l~~l~~~a~~lg--l~~LvEvh~~~E----------l~~al~~~a~iIGINNRn 188 (254)
T pfam00218 121 EYQIYEARAYGADTVLLIVAVLSDELLEELYEYARSLG--MEPLVEVHNEEE----------LERALALGAKLIGVNNRN 188 (254)
T ss_pred HHHHHHHHHCCCCEEEHHHHCCCHHHHHHHHHHHHHHC--CEEEEEECCHHH----------HHHHHHCCCCEEEECCCC
T ss_conf 99999999808886314471199999999999999848--867988689999----------999984899789632788
Q ss_pred HEECCCCCCCCHHHHHHHHHHHHHCCCCE---ECCCCC--HHHHHHHHHCCCEEEECHHHCCCCC
Q ss_conf 10115433452058999999988758947---224777--3489999808988997113238999
Q gi|254780801|r 160 LMCIPPAMGNPKPHFYLLSEIARECKLTK---LSMGMT--RDFELAIASGATSVRIGSGIFGERP 219 (222)
Q Consensus 160 LMti~p~~~d~~~~F~~l~~l~~~~~~~~---LSmGMS--~D~~~Ai~~Gst~vRiGs~iFG~R~ 219 (222)
|=|+- -| .....+|...+.-.. ---|.+ .|....-+.|..-+-||+++.-..+
T Consensus 189 L~tf~---vd----~~~t~~L~~~ip~~~~~VsESGI~~~~di~~l~~~G~~~~LIGe~lm~~~d 246 (254)
T pfam00218 189 LKTFE---VD----LNTTRRLAPMVPEDVLLVAESGISTPEDVEKLAKHGANAFLVGESLMRAPD 246 (254)
T ss_pred HHHHH---CC----HHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHCCCCEEEECHHHHCCCC
T ss_conf 46510---05----799999995589898799838999999999999879999998968757999
No 108
>PRK08185 hypothetical protein; Provisional
Probab=36.91 E-value=35 Score=15.77 Aligned_cols=181 Identities=14% Similarity=0.218 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHHHHHHCCCCCCCCCCC---HHHHHHHHCCCCCCCCCEEEECCC
Q ss_conf 99999999999999819896441899871899999999999729810001210---001111000001258730230244
Q gi|254780801|r 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKL---QEAKKKWIPLRKEWDVQLRFIGSL 82 (222)
Q Consensus 6 nl~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~~~~~~G~~~fGENrv---QE~~~K~~~l~~~~~i~wHfIG~L 82 (222)
|++.++.-|+.|.+ . +++-+|.++-.. +. ..|...+ -++.+++. . ++-.|+ -|=
T Consensus 22 ~~e~~~avi~AAee-~----~sPvIiq~s~~~----~~--------~~g~~~~~~~~~~a~~~~-V----pV~lHL-DH~ 78 (283)
T PRK08185 22 DSCFLRAVVEEAEA-N----NAPAIIAIHPNE----LD--------FVGDDFFAYVRERAQRSP-V----PFVIHL-DHG 78 (283)
T ss_pred CHHHHHHHHHHHHH-H----CCCEEEEECCCH----HH--------HHHHHHHHHHHHHHHHCC-C----CEEEEC-CCC
T ss_conf 99999999999999-7----879899938128----87--------711999999999998779-9----899989-999
Q ss_pred CC-CHHHHHCCC-CHHCCCCC--------CCCHHHHHHHHHHHHCCCEEEEEEEECC---C-CCCCC-C------CCCCH
Q ss_conf 32-001320111-00001222--------2200134433333311430368897004---6-65634-6------57000
Q gi|254780801|r 83 QS-NKVSEIVSL-FDVIETVS--------REKTASLLSLEMIKQSRFLPVYIQVNTG---Y-EIQKS-G------IMPNQ 141 (222)
Q Consensus 83 Qs-NKvk~i~~~-~~~Ihsvd--------s~~~a~~L~~~~~~~~~~~~vliQVN~~---~-e~~K~-G------~~p~e 141 (222)
++ .-++..++. |+.|. +| +++..+++-+.+.+ ..+.++.-+| + |..-. + -.|++
T Consensus 79 ~~~e~~~~ai~~GFsSVM-~DgS~lp~eeNi~~Tk~vv~~ah~----~gv~VEaElG~vg~~e~~~~~~~~~~~~T~pee 153 (283)
T PRK08185 79 ASVEDVMRAIRCGFTSVM-IDGSLLPYEENVALTKEVVELAHK----VGVSVEGELGTIGNTGTSVEGGVSQIIYTDPEQ 153 (283)
T ss_pred CCHHHHHHHHHCCCCEEE-EECCCCCHHHHHHHHHHHHHHHHH----CCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 999999999982998798-638989999999999999999986----598389986236776877666642000489999
Q ss_pred HHHHHHHHH-CCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHCCCCEECCCCCH----HHHHHHHHCCCEEEECHHH
Q ss_conf 122234431-043110011101154334520589999999887589472247773----4899998089889971132
Q gi|254780801|r 142 TKDFVILCR-QKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTR----DFELAIASGATSVRIGSGI 214 (222)
Q Consensus 142 l~~l~~~i~-~~~~L~i~GLMti~p~~~d~~~~F~~l~~l~~~~~~~~LSmGMS~----D~~~Ai~~Gst~vRiGs~i 214 (222)
+.+|++..- ..--+.+--...+=+....|+-.|..+.++.+.+..+---=|-|| |+.-||+.|-+=|-|||.+
T Consensus 154 a~~Fv~~TgvD~LAvaiGn~HG~Yk~~~~p~l~~~~l~~I~~~~~vPLVLHGgSG~~~e~i~~ai~~Gv~KiNi~T~l 231 (283)
T PRK08185 154 AEDFVSRTGVDTLAVAIGTAHGIYPKDKKPKLQMDILKEINERVDIPLVLHGGSANPDAEIAESVTLGVGKINISSDM 231 (283)
T ss_pred HHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCEEEEEECHHH
T ss_conf 999999879997863325545555788984237899999998649998975899999999999998693799848679
No 109
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=35.76 E-value=20 Score=17.41 Aligned_cols=71 Identities=18% Similarity=0.221 Sum_probs=54.2
Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEE-CCCCCCHHHHHCCCCHH-CCCCCCCCHHHHHHHHHHHHCCCE
Q ss_conf 29810001210001111000001258730230-24432001320111000-012222200134433333311430
Q gi|254780801|r 48 CGQVIFAENKLQEAKKKWIPLRKEWDVQLRFI-GSLQSNKVSEIVSLFDV-IETVSREKTASLLSLEMIKQSRFL 120 (222)
Q Consensus 48 ~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfI-G~LQsNKvk~i~~~~~~-Ihsvds~~~a~~L~~~~~~~~~~~ 120 (222)
+-..++|.++++-+.++...+.. +++..-+ ..+-..-+..++..+|+ |+..|+...-..||..+.+.++++
T Consensus 184 ~~~~diG~~Ka~~a~~~L~~~Np--~i~i~~~~~~l~~~n~~~li~~~DlViDctDN~~tR~liN~~c~~~~~Pl 256 (379)
T PRK08762 184 HTEDSVGQPKVDSAAQRIAALNP--RVQVEAVQTRVTSSNVEALLQDVDVVVDGADNFPARYLLNDACVKLGKPL 256 (379)
T ss_pred CCHHHCCCHHHHHHHHHHHHHCC--CCCEEEEHHCCCHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCE
T ss_conf 46433555589999999998689--97338502108989999998628899986887788999999999979997
No 110
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=35.35 E-value=35 Score=15.76 Aligned_cols=39 Identities=21% Similarity=0.228 Sum_probs=29.8
Q ss_pred HHHHHHHCCCCEECCCCCHHHHHHHHH---CCCEEEECHHHC
Q ss_conf 999988758947224777348999980---898899711323
Q gi|254780801|r 177 LSEIARECKLTKLSMGMTRDFELAIAS---GATSVRIGSGIF 215 (222)
Q Consensus 177 l~~l~~~~~~~~LSmGMS~D~~~Ai~~---Gst~vRiGs~iF 215 (222)
...++....++..-+|==.+++.|++. ||+.|-|||++|
T Consensus 229 v~~~~~~~~ipIiG~GGI~s~~Da~e~ilAGAsaVQv~TA~~ 270 (325)
T cd04739 229 IAILSGRVKASLAASGGVHDAEDVVKYLLAGADVVMTTSALL 270 (325)
T ss_pred HHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHEEHHHH
T ss_conf 999964689898888895989999999980988761432346
No 111
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=34.89 E-value=24 Score=16.95 Aligned_cols=72 Identities=15% Similarity=0.201 Sum_probs=53.0
Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHCCCCHH-CCCCCCCCHHHHHHHHHHHHCCCE
Q ss_conf 2981000121000111100000125873023024432001320111000-012222200134433333311430
Q gi|254780801|r 48 CGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDV-IETVSREKTASLLSLEMIKQSRFL 120 (222)
Q Consensus 48 ~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQsNKvk~i~~~~~~-Ihsvds~~~a~~L~~~~~~~~~~~ 120 (222)
+...++|.+++.-+.++...+....++.- +-.+|-..-+..+++.+|+ |+.-|+...--.||..|.+.++++
T Consensus 88 ~~~~dvG~~K~~~a~~~l~~~Np~v~v~~-~~~~l~~~n~~~li~~~DvViD~tDN~~tR~lindac~~~~~Pl 160 (392)
T PRK07878 88 HGQSDVGRSKAQSARDSIVEINPLVNVRL-HEFRLEPSNAVDLFAQYDLILDGTDNFATRYLVNDAAVLAGKPY 160 (392)
T ss_pred CCHHHCCCCHHHHHHHHHHHHCCCCCCEE-HHHCCCHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCE
T ss_conf 68433587079999999998789853121-13137888987643177689866899899999999999969987
No 112
>cd04316 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. P. kodakaraensis AspRS is a class 2b aaRS. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. P. kodakaraensis ND-AspRS can charge both tRNAAsp and tRNAAsn. Some of the enzymes in this group may be discriminating, based on the presence of homologs of asparaginyl-tRNA synthetase (AsnRS) in their completed genomes.
Probab=34.39 E-value=14 Score=18.47 Aligned_cols=75 Identities=11% Similarity=0.084 Sum_probs=52.1
Q ss_pred EEECCCCCCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 23024432001320111000012222200134433333311430368897004665634657000122234431043110
Q gi|254780801|r 77 RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLN 156 (222)
Q Consensus 77 HfIG~LQsNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~ 156 (222)
|++|.|.++-+.+-+...-|||++-...-..-|.-+ .. ...+|+=+..+ -..+++.++++.+..-+-+.
T Consensus 1 H~~g~l~~~~~G~~V~i~Gwv~~~R~~g~~~Fi~LR-D~-----~G~vQ~v~~~~-----~~~~~~~~~~~~l~~EsvV~ 69 (108)
T cd04316 1 HYSAEITPELDGEEVTVAGWVHEIRDLGGIKFVILR-DR-----EGIVQVTAPKK-----KVDKELFKTVRKLSRESVIS 69 (108)
T ss_pred CCCCCCCHHHCCCEEEEEEEEEEEECCCCEEEEEEE-CC-----CEEEEEEEECC-----CCCHHHHHHHHCCCCCEEEE
T ss_conf 934759838999999998999823217987999998-09-----87799999378-----88989999986599944999
Q ss_pred HHHHEE
Q ss_conf 011101
Q gi|254780801|r 157 VEGLMC 162 (222)
Q Consensus 157 i~GLMt 162 (222)
+.|.-.
T Consensus 70 V~G~V~ 75 (108)
T cd04316 70 VTGTVK 75 (108)
T ss_pred EEEEEE
T ss_conf 999999
No 113
>PRK08195 4-hydroxy-2-ketovalerate aldolase; Validated
Probab=33.91 E-value=39 Score=15.45 Aligned_cols=83 Identities=13% Similarity=0.109 Sum_probs=43.9
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCHHHHEE-CCCCCCCCHHHHHHHHHHHHHCC----C-----CEECCCCCHHHHHHHHHC
Q ss_conf 4657000122234431043110011101-15433452058999999988758----9-----472247773489999808
Q gi|254780801|r 135 SGIMPNQTKDFVILCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIARECK----L-----TKLSMGMTRDFELAIASG 204 (222)
Q Consensus 135 ~G~~p~el~~l~~~i~~~~~L~i~GLMt-i~p~~~d~~~~F~~l~~l~~~~~----~-----~~LSmGMS~D~~~Ai~~G 204 (222)
+-.+|+.+.+.++.+.+. +.....|+- .|- ..|.+.....+.+++.+. + +.++|+..+- -.||++|
T Consensus 139 ~~~~~e~l~~~a~~~~~~-Gad~I~l~DT~G~--~~P~~v~~~v~~l~~~l~~~i~igfH~HNnlGlAvANs-laAveaG 214 (337)
T PRK08195 139 HMASPEKLAEQAKLMESY-GAQCVYVVDSAGA--LLPDDVRARVRALRAALKPDTQVGFHGHHNLGLGVANS-LAAVEAG 214 (337)
T ss_pred CCCCHHHHHHHHHHHHHC-CCCEEEECCCCCC--CCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHH-HHHHHCC
T ss_conf 248999999999999865-9999997898766--79999999999999864998549998538867599999-9999809
Q ss_pred CCEEEECHHHCCCCCCC
Q ss_conf 98899711323899999
Q gi|254780801|r 205 ATSVRIGSGIFGERPCQ 221 (222)
Q Consensus 205 st~vRiGs~iFG~R~~~ 221 (222)
++.|=---.=+|+|.=+
T Consensus 215 A~~ID~Ti~GlGegAGN 231 (337)
T PRK08195 215 ADRIDASLAGFGAGAGN 231 (337)
T ss_pred CCEEEEECCCCCCCCCC
T ss_conf 99998505344888787
No 114
>PRK12857 putative aldolase; Reviewed
Probab=33.78 E-value=40 Score=15.44 Aligned_cols=77 Identities=23% Similarity=0.286 Sum_probs=48.6
Q ss_pred CCCCHHHHHHHHHHCCCCCCHHHHEE-CCCCCCCCHHHHHHHHHHHHHCCCCEECCCCC----HHHHHHHHHCCCEEEEC
Q ss_conf 57000122234431043110011101-15433452058999999988758947224777----34899998089889971
Q gi|254780801|r 137 IMPNQTKDFVILCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIARECKLTKLSMGMT----RDFELAIASGATSVRIG 211 (222)
Q Consensus 137 ~~p~el~~l~~~i~~~~~L~i~GLMt-i~p~~~d~~~~F~~l~~l~~~~~~~~LSmGMS----~D~~~Ai~~Gst~vRiG 211 (222)
-.|+++.+|++.. ...-|-+ .+=| -|.+...|+-.|..|+++++....+---=|-| .|+.-||+.|-+-|-||
T Consensus 155 T~peea~~Fv~~T-gvD~LAv-aiGn~HG~yk~~p~L~~~~L~~I~~~~~vPLVLHGgSGi~~e~i~~ai~~Gi~KiNi~ 232 (284)
T PRK12857 155 TDPEEARRFVEET-GVDALAI-AIGTAHGPYKGVPKLDFDRLAKIRELVNIPLVLHGSSGVPDEAIRKAISLGVRKVNID 232 (284)
T ss_pred CCHHHHHHHHHHH-CCCEEEH-HHCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCEEEEEC
T ss_conf 8999999999987-9787701-2056667768988569999999986169998976899999999999998097599748
Q ss_pred HHHC
Q ss_conf 1323
Q gi|254780801|r 212 SGIF 215 (222)
Q Consensus 212 s~iF 215 (222)
|.+.
T Consensus 233 T~l~ 236 (284)
T PRK12857 233 TNIR 236 (284)
T ss_pred HHHH
T ss_conf 7999
No 115
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=33.57 E-value=40 Score=15.42 Aligned_cols=109 Identities=16% Similarity=0.244 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHCCCEEEEEEEECCCC---C--CC--CCCCCCHHHHHHHHHHC-CCCCCHH-----HHEECCC--CCCC
Q ss_conf 013443333331143036889700466---5--63--46570001222344310-4311001-----1101154--3345
Q gi|254780801|r 105 TASLLSLEMIKQSRFLPVYIQVNTGYE---I--QK--SGIMPNQTKDFVILCRQ-KYQLNVE-----GLMCIPP--AMGN 169 (222)
Q Consensus 105 ~a~~L~~~~~~~~~~~~vliQVN~~~e---~--~K--~G~~p~el~~l~~~i~~-~~~L~i~-----GLMti~p--~~~d 169 (222)
.++++..+|.+.+ ++.||++=+=.. . ++ ....|+-+.+.++.... -.++.+- +=|-.-. ...+
T Consensus 143 ~Verig~eC~~~d--ipf~lE~l~Y~~~~~~~~~~eya~~Kp~~V~~~~kefs~~~ygvDvlKvE~Pvn~~~veg~~~ge 220 (324)
T PRK12399 143 YIERIGSECVAED--IPFFLEILTYDEKIADNGSVEYAKVKPHKVNEAMKVFSKPRFNVDVLKVEVPVNMKYVEGFAEGE 220 (324)
T ss_pred HHHHHHHHHHHCC--CCCEEEEECCCCCCCCCCCHHHHHHCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCC
T ss_conf 9999999999769--97157651136777787668898766489999999970335698769861576601013556675
Q ss_pred C----HHHHHHHHHHHH--HCCCCEECCCCCHH-----HHHHHHHCC--CEEEECHHHC
Q ss_conf 2----058999999988--75894722477734-----899998089--8899711323
Q gi|254780801|r 170 P----KPHFYLLSEIAR--ECKLTKLSMGMTRD-----FELAIASGA--TSVRIGSGIF 215 (222)
Q Consensus 170 ~----~~~F~~l~~l~~--~~~~~~LSmGMS~D-----~~~Ai~~Gs--t~vRiGs~iF 215 (222)
+ .+....++++.+ .+.+-.||.|||.| .+.|-+.|| +=+=-|++++
T Consensus 221 ~~yt~~ea~~~fke~~~a~~~Pwv~LSAGV~~~~F~~~l~~A~~aGa~fsG~L~GRA~W 279 (324)
T PRK12399 221 VVYTKEEAAQHFKDQDAATDLPYIYLSAGVSAELFQETLVFAHEAGAKFNGVLCGRATW 279 (324)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEECHHHH
T ss_conf 21129999999999874459997998089998999999999998599733553458888
No 116
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein; InterPro: IPR005992 This family of proteins, often annotated as a putative IMP dehydrogenase, are related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria..
Probab=33.35 E-value=11 Score=19.09 Aligned_cols=26 Identities=35% Similarity=0.455 Sum_probs=23.6
Q ss_pred ECCCCCHHHHHHHHHCCCEEEECHHH
Q ss_conf 22477734899998089889971132
Q gi|254780801|r 189 LSMGMTRDFELAIASGATSVRIGSGI 214 (222)
Q Consensus 189 LSmGMS~D~~~Ai~~Gst~vRiGs~i 214 (222)
=+.+.|||.--||.|||.-|=+||=|
T Consensus 267 G~i~~sGd~~KAIACGADAV~lGSPL 292 (376)
T TIGR01304 267 GGIETSGDLAKAIACGADAVVLGSPL 292 (376)
T ss_pred CCCCCCCCHHHHEECCCCHHHHCCCH
T ss_conf 87055463001001377602007802
No 117
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=32.79 E-value=41 Score=15.33 Aligned_cols=94 Identities=13% Similarity=0.128 Sum_probs=45.5
Q ss_pred EEEECCCCC---CHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHC--CCEEEEE---EEECCCCCCCCCCCCCHHHHHHH
Q ss_conf 023024432---001320111000012222200134433333311--4303688---97004665634657000122234
Q gi|254780801|r 76 LRFIGSLQS---NKVSEIVSLFDVIETVSREKTASLLSLEMIKQS--RFLPVYI---QVNTGYEIQKSGIMPNQTKDFVI 147 (222)
Q Consensus 76 wHfIG~LQs---NKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~--~~~~vli---QVN~~~e~~K~G~~p~el~~l~~ 147 (222)
++|+=.+.- .||..|++...--..|+=-..|++=-+..++.+ ..+||++ |-..|.+|+.-|. |++..=-+.
T Consensus 463 f~~lY~~~~si~eKIe~IA~~IYgA~~V~~s~~A~~~l~~~e~~G~~~~lPVCmAKTqySfS~Dp~l~Ga-P~gf~l~Vr 541 (587)
T PRK13507 463 FHFLYPLEMPLRERIETIAREVYGADGVSYTPEALEKLARLESDPNTQDFATCMVKTHLSLSHDPALKGV-PKGWTLPIR 541 (587)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHCC-CCCCEEEEE
T ss_conf 6425799999999999999971599867789999999999997489889877787478775779153199-999868740
Q ss_pred HHHCCCC----CCHHH-HEECCCCCCCC
Q ss_conf 4310431----10011-10115433452
Q gi|254780801|r 148 LCRQKYQ----LNVEG-LMCIPPAMGNP 170 (222)
Q Consensus 148 ~i~~~~~----L~i~G-LMti~p~~~d~ 170 (222)
.++-..+ +-+.| +||||-....|
T Consensus 542 evrlsaGAGFiV~l~G~ImTMPGLPk~P 569 (587)
T PRK13507 542 DILTYMGAGFVVPVAGDISLMPGTGSDP 569 (587)
T ss_pred EEEECCCCCEEEEEECCCCCCCCCCCCC
T ss_conf 7998788866989967522179999975
No 118
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=32.33 E-value=42 Score=15.28 Aligned_cols=69 Identities=16% Similarity=0.164 Sum_probs=42.7
Q ss_pred CH--HCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCC-CCCCCCCCCHHHHHHHHHHCCCCCCHHHHEECCCC
Q ss_conf 00--001222220013443333331143036889700466-56346570001222344310431100111011543
Q gi|254780801|r 94 FD--VIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE-IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA 166 (222)
Q Consensus 94 ~~--~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e-~~K~G~~p~el~~l~~~i~~~~~L~i~GLMti~p~ 166 (222)
+| +++|+.++..++.+...+.+ ...+++.+.+.+..+ ...+|.+.+ +.+..+...+.+...|++|.+|.
T Consensus 159 vD~il~ET~~~~~E~~~~~~~~~~-~~~~pv~~s~t~~~~~~l~~G~~l~---~a~~~~~~~~~v~~vGiNC~~p~ 230 (308)
T PRK09485 159 ADLLALETIPNLDEAEALVELLKE-FPQVPAWLSFTLRDGTHISDGTPLA---EAAAALAAYPQVVAVGINCTAPE 230 (308)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHH-CCCCCEEEEEEECCCCCCCCCCCHH---HHHHHHHHCCCCCEEEECCCCHH
T ss_conf 988999603999999999999985-5799689999976898418999199---99999973788536863178999
No 119
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=32.15 E-value=22 Score=17.11 Aligned_cols=102 Identities=7% Similarity=0.072 Sum_probs=59.6
Q ss_pred HHHHHHHCCCCHHHCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEE-EECCCCCCHHHHHC-
Q ss_conf 9999998198964418998718999999999997298100012100011110000012587302-30244320013201-
Q gi|254780801|r 14 IENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLR-FIGSLQSNKVSEIV- 91 (222)
Q Consensus 14 I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wH-fIG~LQsNKvk~i~- 91 (222)
+..+..++| ...+.|+=--. ...+.+.-=+-+-..++|.++++-+.++...+.. +++.+ +--.+-..-+..++
T Consensus 26 ~a~~LarsG--VG~l~lvD~D~-v~~SNLnRQ~~a~~~~iG~~K~~~~~~rl~~iNP--~~~v~~~~~~~~~~n~~~ll~ 100 (231)
T cd00755 26 AAEALARSG--VGKLTLIDFDV-VCVSNLNRQIHALLSTVGKPKVEVMAERIRDINP--ECEVDAVEEFLTPDNSEDLLG 100 (231)
T ss_pred HHHHHHHCC--CCEEEEEECCE-ECCCCHHHHHCCCHHHCCCCCHHHHHHHHHHHCC--CCEEEEEHHHCCHHHHHHHHC
T ss_conf 999999809--97599971999-0454444330165633699728999999998799--988998625159989999845
Q ss_pred CCCHH-CCCCCCCCHHHHHHHHHHHHCCCE
Q ss_conf 11000-012222200134433333311430
Q gi|254780801|r 92 SLFDV-IETVSREKTASLLSLEMIKQSRFL 120 (222)
Q Consensus 92 ~~~~~-Ihsvds~~~a~~L~~~~~~~~~~~ 120 (222)
..+|+ |+.+|++..=-.|+..+.+.+.++
T Consensus 101 ~~~D~VvDaiD~~~~K~~l~~~c~~~~ipl 130 (231)
T cd00755 101 GDPDFVVDAIDSIRAKVALIAYCRKRKIPV 130 (231)
T ss_pred CCCCEEEECCCCHHHHHHHHHHHHHCCCEE
T ss_conf 477778534424877999999999829908
No 120
>PRK05588 histidinol-phosphatase; Provisional
Probab=31.82 E-value=43 Score=15.23 Aligned_cols=63 Identities=17% Similarity=0.138 Sum_probs=39.8
Q ss_pred EEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHH-EECCCCCCCC---HHHHHHHHHHHHHCCCCEE
Q ss_conf 03688970046656346570001222344310431100111-0115433452---0589999999887589472
Q gi|254780801|r 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL-MCIPPAMGNP---KPHFYLLSEIARECKLTKL 189 (222)
Q Consensus 120 ~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GL-Mti~p~~~d~---~~~F~~l~~l~~~~~~~~L 189 (222)
-...|+|||++=-.+..+ ....++++...++ .|- .|+|+..-.| ...|.+..++.+++++.++
T Consensus 179 ~g~~lEiNTsgl~~~~~~--~~~~~i~~~~~el-----GG~~itiGSDAH~p~~vg~~f~~a~~ll~~~Gf~~v 245 (256)
T PRK05588 179 KGKVLEINTRRLDHKTAF--ENLVKIYKRFYEL-----GGKYITLGSDSHNIEDIGNNFKNALEIAEYCNLKPV 245 (256)
T ss_pred CCCEEEEECCCCCCCCCC--CCHHHHHHHHHHH-----CCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 698599865234789887--8879999999985-----994799727989889988639999999998599899
No 121
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=31.78 E-value=43 Score=15.22 Aligned_cols=75 Identities=16% Similarity=0.257 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHHHCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHCCC---------------CEECCCCCH-----HH
Q ss_conf 7000122234431043110011101154334520589999999887589---------------472247773-----48
Q gi|254780801|r 138 MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKL---------------TKLSMGMTR-----DF 197 (222)
Q Consensus 138 ~p~el~~l~~~i~~~~~L~i~GLMti~p~~~d~~~~F~~l~~l~~~~~~---------------~~LSmGMS~-----D~ 197 (222)
.++.+.++++.+....+ .++.+|.-. ........+.+|++.+++ ..|++|+-+ .-
T Consensus 197 ~~~~i~~a~~~L~~A~r----Pviv~G~g~-~~~~a~~~~~~lae~l~~Pv~tt~~~kg~~p~~hpl~~G~~g~~~~~~~ 271 (564)
T PRK08155 197 SEESIRDAAAMINAAKR----PVLYLGGGV-INAPARVRAIELAEKAQLPTTMTLMALGMLPKAHPLSLGMLGMHGARST 271 (564)
T ss_pred CHHHHHHHHHHHHHCCC----CEEEECCCC-CCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 99999999999985449----889706874-5501999999999986989773324567776668533465436662889
Q ss_pred HHHHHHCCCEEEECHHHCCCC
Q ss_conf 999980898899711323899
Q gi|254780801|r 198 ELAIASGATSVRIGSGIFGER 218 (222)
Q Consensus 198 ~~Ai~~Gst~vRiGs~iFG~R 218 (222)
..++++--.+|.+|+. |+.+
T Consensus 272 ~~~l~~aDlvl~lG~~-l~~~ 291 (564)
T PRK08155 272 NYILQEADLLIVLGAR-FDDR 291 (564)
T ss_pred HHHHHCCCEEEEEEEC-CCCC
T ss_conf 9998428736887201-6765
No 122
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=30.38 E-value=45 Score=15.07 Aligned_cols=57 Identities=14% Similarity=0.197 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHCEE-----EEECCCCCHHHHHHHHHCCCCCCCCCCCH
Q ss_conf 8999999999999999981989644189-----98718999999999997298100012100
Q gi|254780801|r 3 LGNKLQVFKQKIENSAILAKRPKDSVSL-----VAVSKMVDSKKIRVALSCGQVIFAENKLQ 59 (222)
Q Consensus 3 i~~nl~~i~~~I~~a~~~~gR~~~~v~L-----iaVtK~~~~e~I~~~~~~G~~~fGENrvQ 59 (222)
+++..+..+++|.+.............+ .-..+....+-|..+|+.|+--|||=..-
T Consensus 247 ~~~~~~~l~~~in~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~L~dig~lkFGeFtLk 308 (478)
T PRK05500 247 LKEQVKSLREEINQIRQQIVQESSSCDLWTPDVCFLNQHPHQDLILQLYDIGCILFGEYVQA 308 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHCCCEEEECEEEC
T ss_conf 89999999999999998751378763214764232157846899999974585785046876
No 123
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=29.98 E-value=46 Score=15.03 Aligned_cols=181 Identities=15% Similarity=0.185 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHCEEEEEC----CCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECC
Q ss_conf 99999999999999819896441899871----89999999999972981000121000111100000125873023024
Q gi|254780801|r 6 KLQVFKQKIENSAILAKRPKDSVSLVAVS----KMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGS 81 (222)
Q Consensus 6 nl~~i~~~I~~a~~~~gR~~~~v~LiaVt----K~~~~e~I~~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~ 81 (222)
|++.++.-|+.|.+ .+++-+|.++ |+.+.+.+..+... +.++ ... ++-.|+==.
T Consensus 27 n~e~~~avi~AAee-----~~sPvIiq~s~~~~~~~~~~~~~~~~~~------------~a~~-~~V----PV~lHLDHg 84 (281)
T PRK06806 27 NMEMVMGAIKAAEE-----LSSPLILQIAEVRLNHSPLHMIGPLMVA------------AAKK-ATV----PVAVHFDHG 84 (281)
T ss_pred CHHHHHHHHHHHHH-----HCCCEEEECCHHHHCCCCHHHHHHHHHH------------HHHH-CCC----CEEEECCCC
T ss_conf 99999999999999-----6999899956433324609999999999------------9974-799----889973898
Q ss_pred CCCCHHHHHCCC-CHHCCCCC--------CCCHHHHHHHHHHHHCCCEEEEEEEECC---CCC----C-C-CCCCCCHHH
Q ss_conf 432001320111-00001222--------2200134433333311430368897004---665----6-3-465700012
Q gi|254780801|r 82 LQSNKVSEIVSL-FDVIETVS--------REKTASLLSLEMIKQSRFLPVYIQVNTG---YEI----Q-K-SGIMPNQTK 143 (222)
Q Consensus 82 LQsNKvk~i~~~-~~~Ihsvd--------s~~~a~~L~~~~~~~~~~~~vliQVN~~---~e~----~-K-~G~~p~el~ 143 (222)
---.-+++.++. |+.|- +| +++..+++-..+.. ..+.++.-+| +.+ . . .=-.|+++.
T Consensus 85 ~~~e~i~~ai~~GfsSVM-~DgS~l~~eeNi~~Tkevve~Ah~----~gv~VEaElG~igg~ed~~~~~~~~~T~peea~ 159 (281)
T PRK06806 85 MTFEKIKEALEIGFTSVM-FDGSHYPLEENIQKTKEIVELAKQ----YGATVEAEIGRVGGSEDGSEDIEMLLTSTEEAK 159 (281)
T ss_pred CCHHHHHHHHHCCCCEEE-EECCCCCHHHHHHHHHHHHHHHHH----CCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 999999999982998799-609989999999999999999988----598699973333774677666675668989999
Q ss_pred HHHHHHHCCCCCCHHHHEE-CCCCCCCCHHHHHHHHHHHHHCCCCEECCCCCH----HHHHHHHHCCCEEEECHHHC
Q ss_conf 2234431043110011101-154334520589999999887589472247773----48999980898899711323
Q gi|254780801|r 144 DFVILCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIARECKLTKLSMGMTR----DFELAIASGATSVRIGSGIF 215 (222)
Q Consensus 144 ~l~~~i~~~~~L~i~GLMt-i~p~~~d~~~~F~~l~~l~~~~~~~~LSmGMS~----D~~~Ai~~Gst~vRiGs~iF 215 (222)
+|++.. ...-|-+ .+=| -|.+...|+-.|..|+++.+.+..+---=|-|| |+.-||+.|=.=|-|+|.++
T Consensus 160 ~Fv~~T-gvD~LAv-aiGt~HG~yk~~p~L~~d~L~~I~~~~~iPLVLHGgSG~~~e~i~~ai~~Gi~KiNi~T~l~ 234 (281)
T PRK06806 160 RFAEET-DVDALAV-AIGNAHGMYNGDPNLRLDRLQEINDNVHIPLVLHGGSGISPEDFKQCIQHGIRKINVATATF 234 (281)
T ss_pred HHHHHH-CCCEEEE-ECCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCEEEEECHHHH
T ss_conf 999985-9989987-43755456589986699999999972899989649999999999999986983898675789
No 124
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=29.87 E-value=25 Score=16.84 Aligned_cols=78 Identities=14% Similarity=0.171 Sum_probs=58.5
Q ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEE-EECCCCCCHHHHHCCCCHH-CCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 9999997298100012100011110000012587302-3024432001320111000-0122222001344333333114
Q gi|254780801|r 41 KIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLR-FIGSLQSNKVSEIVSLFDV-IETVSREKTASLLSLEMIKQSR 118 (222)
Q Consensus 41 ~I~~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wH-fIG~LQsNKvk~i~~~~~~-Ihsvds~~~a~~L~~~~~~~~~ 118 (222)
...-=.-++..++|.++++-+.++...+.. +++.. +-.+|..+-+..+++.+|+ ++.-|+...--.||..|.+.++
T Consensus 80 NL~RQil~~~~diG~~K~~~A~~~l~~lNp--~i~i~~~~~~l~~~n~~~li~~~DvVvD~tDNf~tRylindaC~~~~~ 157 (370)
T PRK05600 80 NIHRQILFGASDVGRPKVEVAAERLKEIQP--DIRVNALRERLTAENAVELLNGVDLVLDGSDSFATKFLVADAAEITGT 157 (370)
T ss_pred CHHHHHCCCHHHCCCCHHHHHHHHHHHHCC--CCCEEEHHHHCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCC
T ss_conf 105554269766697579999999998789--971573566469999998763687899778887999999999998499
Q ss_pred CE
Q ss_conf 30
Q gi|254780801|r 119 FL 120 (222)
Q Consensus 119 ~~ 120 (222)
++
T Consensus 158 Pl 159 (370)
T PRK05600 158 PL 159 (370)
T ss_pred CE
T ss_conf 76
No 125
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=29.80 E-value=46 Score=15.01 Aligned_cols=75 Identities=23% Similarity=0.278 Sum_probs=49.2
Q ss_pred CCCHHHHHHHHHHCCCCCC--HHHHEECCCCC-CCCHHHHHHHHHHHHHCCCCEECCCCCH----HHHHHHHHCCCEEEE
Q ss_conf 7000122234431043110--01110115433-4520589999999887589472247773----489999808988997
Q gi|254780801|r 138 MPNQTKDFVILCRQKYQLN--VEGLMCIPPAM-GNPKPHFYLLSEIARECKLTKLSMGMTR----DFELAIASGATSVRI 210 (222)
Q Consensus 138 ~p~el~~l~~~i~~~~~L~--i~GLMti~p~~-~d~~~~F~~l~~l~~~~~~~~LSmGMS~----D~~~Ai~~Gst~vRi 210 (222)
.|+++.+|++.-- ..-|- +--.- |.+. ..|+-.|..|+++++.+..+---=|-|| |+.-||+.|-+-|-|
T Consensus 149 ~peea~~Fv~~Tg-vD~LAvaiGn~H--G~yk~~~p~L~~~~L~~I~~~~~vPLVlHGgSG~~~e~i~~ai~~Gi~KiNi 225 (276)
T cd00947 149 DPEEAEEFVEETG-VDALAVAIGTSH--GAYKGGEPKLDFDRLKEIAERVNVPLVLHGGSGIPDEQIRKAIKLGVCKINI 225 (276)
T ss_pred CHHHHHHHHHHHC-CCEEEEECCCCC--CCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCEEEEE
T ss_conf 9999999999859-887876416434--4568999864889999999973998797579999999999999849759986
Q ss_pred CHHHC
Q ss_conf 11323
Q gi|254780801|r 211 GSGIF 215 (222)
Q Consensus 211 Gs~iF 215 (222)
+|.+.
T Consensus 226 ~T~l~ 230 (276)
T cd00947 226 NTDLR 230 (276)
T ss_pred CHHHH
T ss_conf 73899
No 126
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion]
Probab=29.76 E-value=31 Score=16.15 Aligned_cols=26 Identities=8% Similarity=0.178 Sum_probs=20.1
Q ss_pred EECCCCCHHHH----HHHHHCCCCCCCCCC
Q ss_conf 87189999999----999972981000121
Q gi|254780801|r 32 AVSKMVDSKKI----RVALSCGQVIFAENK 57 (222)
Q Consensus 32 aVtK~~~~e~I----~~~~~~G~~~fGENr 57 (222)
...+++|.|+| .++|++|+|+|-=-|
T Consensus 210 g~~~~R~~e~Vv~EVkaLY~~GvrhFRlGR 239 (560)
T COG1031 210 GRPEFRPPEDVVEEVKALYRAGVRHFRLGR 239 (560)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCEEEECC
T ss_conf 884658989999999999970603056156
No 127
>PRK10693 response regulator of RpoS; Provisional
Probab=29.28 E-value=47 Score=14.95 Aligned_cols=36 Identities=17% Similarity=0.181 Sum_probs=29.9
Q ss_pred HHHCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCHH
Q ss_conf 644189987189999999999972981000121000
Q gi|254780801|r 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60 (222)
Q Consensus 25 ~~~v~LiaVtK~~~~e~I~~~~~~G~~~fGENrvQE 60 (222)
...+-+|.+|-+-..+++..++++|..+|=---+.+
T Consensus 77 ~~~~PVIvlTa~~~~~d~v~al~~GA~DyL~KPI~d 112 (337)
T PRK10693 77 GDQTPVLVISATENMADIAKALRLGVEDVLLKPVKD 112 (337)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCC
T ss_conf 899649999868999999999974995899789699
No 128
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=29.16 E-value=47 Score=14.94 Aligned_cols=76 Identities=21% Similarity=0.216 Sum_probs=47.1
Q ss_pred CCCCHHHHHHHHHHCCCCCCHHHHEE-CCCCCCCCHHHHHHHHHHHHHCCCCEECCCCCH----HHHHHHHHCCCEEEEC
Q ss_conf 57000122234431043110011101-154334520589999999887589472247773----4899998089889971
Q gi|254780801|r 137 IMPNQTKDFVILCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIARECKLTKLSMGMTR----DFELAIASGATSVRIG 211 (222)
Q Consensus 137 ~~p~el~~l~~~i~~~~~L~i~GLMt-i~p~~~d~~~~F~~l~~l~~~~~~~~LSmGMS~----D~~~Ai~~Gst~vRiG 211 (222)
-.|+++.+|++.- ...-|-+ .+=| =|.+...|+-.|..++++.+..+.+---=|-|| |+.-||+.|-.-|-|+
T Consensus 156 T~pe~a~~Fv~~T-gvD~LAv-aiGn~HG~yk~~p~l~~~~l~~i~~~~~vPLVLHGgSG~~~e~i~~ai~~Gv~KiNi~ 233 (285)
T PRK07709 156 ADPAECKHLVEAT-GIDCLAP-ALGSVHGPYKGEPNLGFAEMEQVRDFTGVPLVLHGGTGIPTADIEKAISLGTSKINVN 233 (285)
T ss_pred CCHHHHHHHHHHH-CCCEEEH-HHCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHCCCEEEEEC
T ss_conf 7999999999731-8788842-2055557768988766999999984059987964999999999999998598599988
Q ss_pred HHH
Q ss_conf 132
Q gi|254780801|r 212 SGI 214 (222)
Q Consensus 212 s~i 214 (222)
|.+
T Consensus 234 T~l 236 (285)
T PRK07709 234 TEN 236 (285)
T ss_pred HHH
T ss_conf 288
No 129
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit; InterPro: IPR012062 Escherichia coli and other enteric bacteria contain two closely related D-tagatose 1,6-bisphosphate (TagBP)-specific aldolases involved in catabolism of galactitol (genes gatY gatZ) and of N-acetyl-galactosamine and D-galactosamine (genes kbaY, kbaZ, also called agaY, agaZ). The catalytic subunits GatY/KbaY alone are sufficient to show aldolase activity and contain most or all of the residues that have been identified as essential in substrate/product recognition and catalysis for class II aldolases , . However, these aldolases differ from other Class II aldolases (which are homodimeric enzymes) in that they require subunits GatZ/KbaZ for full activity and for good in vivo and in vitro stability. The Z subunits alone do not show any aldolase activity . It should be noted that the previous suggestion of a tagatose 6P-kinase function for AgaZ and other members of this family turned out to be erroneous , .; GO: 0009024 tagatose-6-phosphate kinase activity, 0019402 galactitol metabolic process.
Probab=28.69 E-value=48 Score=14.88 Aligned_cols=77 Identities=23% Similarity=0.259 Sum_probs=53.2
Q ss_pred CCCEEEEE-----EEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEE----CCCCC---CCCHHHHHHHHHHHH--
Q ss_conf 14303688-----97004665634657000122234431043110011101----15433---452058999999988--
Q gi|254780801|r 117 SRFLPVYI-----QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC----IPPAM---GNPKPHFYLLSEIAR-- 182 (222)
Q Consensus 117 ~~~~~vli-----QVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMt----i~p~~---~d~~~~F~~l~~l~~-- 182 (222)
....+||| |||=- -.=.|..|.++.+|+..|.+--|+--.=||- .||+- ..+.+...+-..|=+
T Consensus 35 ~~~~~VLIEATsNQVNQf--GGYTGMtP~DFr~fV~~IA~~~gfP~~rl~LGGDHLGPN~Wq~lpA~~AM~~A~~lv~aY 112 (430)
T TIGR02810 35 ASGTPVLIEATSNQVNQF--GGYTGMTPADFRDFVETIADRIGFPRERLILGGDHLGPNPWQHLPAEEAMEKAEALVKAY 112 (430)
T ss_pred HCCCCCEEEECCCCCCCC--CCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 528971377311430357--888799707899999999973157379886067757878876776799999999999999
Q ss_pred ------HCCCCEECCCCCHH
Q ss_conf ------75894722477734
Q gi|254780801|r 183 ------ECKLTKLSMGMTRD 196 (222)
Q Consensus 183 ------~~~~~~LSmGMS~D 196 (222)
|++|+ +|||=-||
T Consensus 113 v~AGF~KIHLD-aSM~CagD 131 (430)
T TIGR02810 113 VEAGFTKIHLD-ASMSCAGD 131 (430)
T ss_pred HHHCCCCCCCC-CCCCCCCC
T ss_conf 98588501011-66457887
No 130
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=28.34 E-value=16 Score=18.03 Aligned_cols=42 Identities=21% Similarity=0.219 Sum_probs=27.6
Q ss_pred CEEEEECCCCCHHHHHHHHHC--CCCCCCCCC-CHHHHHHHHCCC
Q ss_conf 189987189999999999972--981000121-000111100000
Q gi|254780801|r 28 VSLVAVSKMVDSKKIRVALSC--GQVIFAENK-LQEAKKKWIPLR 69 (222)
Q Consensus 28 v~LiaVtK~~~~e~I~~~~~~--G~~~fGENr-vQE~~~K~~~l~ 69 (222)
-.++.|+|+.+.++|+.||+- =..|=--|. -.|+.+|+.+..
T Consensus 7 YeiLGV~k~As~~EIKkAYRKLA~kyHPD~n~g~~~AeeKFKEI~ 51 (371)
T COG0484 7 YEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEIN 51 (371)
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 642098889999999999999999868898989877999999999
No 131
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=28.19 E-value=49 Score=14.83 Aligned_cols=42 Identities=26% Similarity=0.486 Sum_probs=31.0
Q ss_pred HHHHHHHHHHCCCCEECCCCCHHHHHHHH---HCCCEEEECHHHC
Q ss_conf 99999998875894722477734899998---0898899711323
Q gi|254780801|r 174 FYLLSEIARECKLTKLSMGMTRDFELAIA---SGATSVRIGSGIF 215 (222)
Q Consensus 174 F~~l~~l~~~~~~~~LSmGMS~D~~~Ai~---~Gst~vRiGs~iF 215 (222)
.+..+.++..++++....|==.+++.|++ .||+.|-|+|++|
T Consensus 223 l~~v~~~~~~~~ipIig~GGI~s~~da~e~i~aGAs~VQv~Tav~ 267 (301)
T PRK07259 223 LRMVYQVAKAVDIPIIGMGGISTAEDAIEFMMAGASAVQVGTANF 267 (301)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 999999985169888976797999999999983987987212331
No 132
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase; InterPro: IPR012813 Members of this family are mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC). It acts sequentially after mannosyl-3-phosphoglycerate synthase (2.4.1.217 from EC) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.; GO: 0050531 mannosyl-3-phosphoglycerate phosphatase activity, 0051479 mannosylglycerate biosynthetic process, 0005737 cytoplasm.
Probab=27.84 E-value=20 Score=17.44 Aligned_cols=11 Identities=9% Similarity=0.069 Sum_probs=4.5
Q ss_pred CCCCCCCCCHH
Q ss_conf 81000121000
Q gi|254780801|r 50 QVIFAENKLQE 60 (222)
Q Consensus 50 ~~~fGENrvQE 60 (222)
...||+.-+.|
T Consensus 128 ~~~yg~~t~Ee 138 (248)
T TIGR02461 128 IKGYGDMTAEE 138 (248)
T ss_pred HHHCCCCCHHH
T ss_conf 11227888889
No 133
>PRK06843 inositol-5-monophosphate dehydrogenase; Validated
Probab=27.71 E-value=50 Score=14.77 Aligned_cols=50 Identities=24% Similarity=0.371 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHH---CCCCEE---CCCCCHHHHHHHHHCCCEEEECHHHCCCCCC
Q ss_conf 0589999999887---589472---2477734899998089889971132389999
Q gi|254780801|r 171 KPHFYLLSEIARE---CKLTKL---SMGMTRDFELAIASGATSVRIGSGIFGERPC 220 (222)
Q Consensus 171 ~~~F~~l~~l~~~---~~~~~L---SmGMS~D~~~Ai~~Gst~vRiGs~iFG~R~~ 220 (222)
.|.+....+.++. ...+.+ .+..|+|.--||.+||..|=+|+.|=|....
T Consensus 239 vPq~tAi~d~~~~a~~~~v~IIADGGI~~sGDi~KAlA~GAdaVMlGs~lAgt~Ea 294 (404)
T PRK06843 239 VPQITAICDVYEVCKNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKES 294 (404)
T ss_pred CCHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHCCCCEEEECCHHCCCCCC
T ss_conf 74899999999996057997883687465327999997189888867131367669
No 134
>cd00674 LysRS_core_class_I This is the catalytic core domain of lysyl tRNA synthetase (LysRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=27.66 E-value=50 Score=14.76 Aligned_cols=131 Identities=15% Similarity=0.122 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHH---------------HHHCCCCHHHCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 99999999999999---------------998198964418998718999999999997298100012100011110000
Q gi|254780801|r 4 GNKLQVFKQKIENS---------------AILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL 68 (222)
Q Consensus 4 ~~nl~~i~~~I~~a---------------~~~~gR~~~~v~LiaVtK~~~~e~I~~~~~~G~~~fGENrvQE~~~K~~~l 68 (222)
-+|.+.|++-|... |..+|+ ..++++.+-.-.+ . .-|.|.+-+-|+.-+--..-|. .+
T Consensus 143 l~~~~~I~~Il~~~~g~e~~~~y~P~~piC~~cGk--~~t~v~~~d~~~~--~--V~Y~c~cG~~~~~~~~~g~gKL-~W 215 (354)
T cd00674 143 LEKRDEIMEILNEYRGRELQETWYPYMPYCEKCGK--DTTTVEEYDAEAE--T--VRYRCECGHEGEVDIRGGGGKL-QW 215 (354)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCC--CEEEEEEEECCCC--E--EEEECCCCCEEEEECCCCCCEE-EE
T ss_conf 98289999999985475557864777640588881--1676899948999--7--9999599988888437886203-00
Q ss_pred CCCCCCCEEEECCCCCCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEE---EEEEECCCCCCCC---CCCCCHH
Q ss_conf 012587302302443200132011100001222220013443333331143036---8897004665634---6570001
Q gi|254780801|r 69 RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV---YIQVNTGYEIQKS---GIMPNQT 142 (222)
Q Consensus 69 ~~~~~i~wHfIG~LQsNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~v---liQVN~~~e~~K~---G~~p~el 142 (222)
+-+|..+|.+-| |-.=..-.|.+..=.|..+..+|.+..-....+..+ |+.+.-++..||| |++++|.
T Consensus 216 rvDW~mRW~~lg------Vd~Ep~GKDh~~~GgS~d~~~~I~~~i~g~~pP~~~~YE~~~~kgg~KmSsSkGn~it~~e~ 289 (354)
T cd00674 216 RVDWAMRWAALG------VDFEPFGKDHASSGGSYDTSKEIAREIFGGEPPEGVMYEFIGLKGGGKMSSSKGNVITPRDW 289 (354)
T ss_pred EECCEEEEEECC------EEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHH
T ss_conf 103514553405------15883574202467525578999999709999988416999906998722467861289999
Q ss_pred HHHHH
Q ss_conf 22234
Q gi|254780801|r 143 KDFVI 147 (222)
Q Consensus 143 ~~l~~ 147 (222)
.+++.
T Consensus 290 L~~~~ 294 (354)
T cd00674 290 LEVAP 294 (354)
T ss_pred HHHCC
T ss_conf 97659
No 135
>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]
Probab=27.38 E-value=50 Score=14.73 Aligned_cols=139 Identities=14% Similarity=0.087 Sum_probs=74.3
Q ss_pred CCCCEEEECCCCCCHHHHHCCC-CHH--CCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCC---CCCCCCHHHHH
Q ss_conf 5873023024432001320111-000--01222220013443333331143036889700466563---46570001222
Q gi|254780801|r 72 WDVQLRFIGSLQSNKVSEIVSL-FDV--IETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQK---SGIMPNQTKDF 145 (222)
Q Consensus 72 ~~i~wHfIG~LQsNKvk~i~~~-~~~--Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K---~G~~p~el~~l 145 (222)
.|.+.|=||+-=..-++.+..+ +|+ +|+.-=.+..+.+-+.+.+.++ .-+.+-+|++.+... -|+. +.+.+.
T Consensus 67 lDlK~~DIpnT~~~~~~~~~~~g~d~vtvH~~~G~~~~~~~~e~~~~~~~-~vl~vT~lts~~~~~~~~~~~~-~~~~~~ 144 (240)
T COG0284 67 LDLKLADIPNTVALAAKAAADLGADAVTVHAFGGFDMLRAAKEALEAGGP-FVLAVTSLTSMGELQLAELGIN-SSLEEQ 144 (240)
T ss_pred EEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCC-EEEEEEECCCCHHHHHHHCCCC-CHHHHH
T ss_conf 74100563679999999865437848997076788799999998864386-6999995798016666541224-208999
Q ss_pred HHHHHCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHCCCCEEC--CCC------CHH---HHHHHHHCCCEEEECHHH
Q ss_conf 344310431100111011543345205899999998875894722--477------734---899998089889971132
Q gi|254780801|r 146 VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLS--MGM------TRD---FELAIASGATSVRIGSGI 214 (222)
Q Consensus 146 ~~~i~~~~~L~i~GLMti~p~~~d~~~~F~~l~~l~~~~~~~~LS--mGM------S~D---~~~Ai~~Gst~vRiGs~i 214 (222)
+.......+ -.|+..+...... ....++... ..+..++ .|+ -++ +..|+..||+++=||+.|
T Consensus 145 v~~~a~~~~--~~G~dgvv~~~~e----~~~ir~~~g-~~~~iltPGIg~~~~~gdQ~~~~t~~~A~~~Gad~ivVGR~I 217 (240)
T COG0284 145 VLRLAKLAG--EAGLDGVVCSAEE----VAAIREILG-PDFLILTPGIGAGSQGGDQGRVMTPGEAVRAGADYIVVGRPI 217 (240)
T ss_pred HHHHHHHHC--CCCCEEEECCHHH----HHHHHHHCC-CCCEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEECHHH
T ss_conf 999998724--3783578728888----889998538-896798887276767778334449899975589789977123
Q ss_pred CCCCC
Q ss_conf 38999
Q gi|254780801|r 215 FGERP 219 (222)
Q Consensus 215 FG~R~ 219 (222)
+.+-+
T Consensus 218 ~~a~~ 222 (240)
T COG0284 218 TQAGD 222 (240)
T ss_pred HCCCC
T ss_conf 23898
No 136
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=27.28 E-value=30 Score=16.28 Aligned_cols=95 Identities=17% Similarity=0.144 Sum_probs=43.8
Q ss_pred CEEEECCCCC---CHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCC-CEEEEE---EEECCCCCCCCCCCCCHHHHHHH
Q ss_conf 3023024432---0013201110000122222001344333333114-303688---97004665634657000122234
Q gi|254780801|r 75 QLRFIGSLQS---NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR-FLPVYI---QVNTGYEIQKSGIMPNQTKDFVI 147 (222)
Q Consensus 75 ~wHfIG~LQs---NKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~-~~~vli---QVN~~~e~~K~G~~p~el~~l~~ 147 (222)
.++|+=++.- .||+.|++...--..|+=-..|++=-+..++.+- .+||++ |-.+|.+|+.-|. |++..=-+.
T Consensus 454 ~f~~LY~~~~~i~eKIe~IA~eIYGA~~V~~s~~A~~qL~~~e~~G~~~lPVCmAKTqySfSdDp~l~Ga-P~gf~l~Vr 532 (577)
T PRK13506 454 QFKLLYPDEMSLEAKLMTLAEVGYGAAGVSLSDKAKQQLAELTALGYDHLPVCMAKTPLSISHDPSLKGV-PTDFEVPIR 532 (577)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHCC-CCCCEEEEE
T ss_conf 8631279999999999999986239985788999999999999759998887687478775779254289-999868740
Q ss_pred HHHCCCC----CCHHH-HEECCCCCCCC
Q ss_conf 4310431----10011-10115433452
Q gi|254780801|r 148 LCRQKYQ----LNVEG-LMCIPPAMGNP 170 (222)
Q Consensus 148 ~i~~~~~----L~i~G-LMti~p~~~d~ 170 (222)
.++-..+ +-+.| +||||-....|
T Consensus 533 evrlsaGAGFIV~l~G~ImTMPGLPk~P 560 (577)
T PRK13506 533 ELRLCAGAGFVTALVGNVMTMPGLGLKP 560 (577)
T ss_pred EEEECCCCCEEEEEECCCCCCCCCCCCC
T ss_conf 8998688866999967522279999975
No 137
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=27.24 E-value=51 Score=14.72 Aligned_cols=72 Identities=24% Similarity=0.217 Sum_probs=47.7
Q ss_pred CCCCHHHHHHHHHHCCCCCC-----HHHHEECCCCCCCCHHHHHHHHHHHHHCCCCEECCCCCH----HHHHHHHHCCCE
Q ss_conf 57000122234431043110-----011101154334520589999999887589472247773----489999808988
Q gi|254780801|r 137 IMPNQTKDFVILCRQKYQLN-----VEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTR----DFELAIASGATS 207 (222)
Q Consensus 137 ~~p~el~~l~~~i~~~~~L~-----i~GLMti~p~~~d~~~~F~~l~~l~~~~~~~~LSmGMS~----D~~~Ai~~Gst~ 207 (222)
-.|+++.+|++.- .+.-|- .-|+ ...|+-.|..++++++....+--==|-|| |+.-||++|-+=
T Consensus 153 T~Peea~~Fv~~T-gvD~LAvaiGt~HG~------~~~p~l~~~~l~~I~~~~~iPLVLHGgSGi~~e~i~~ai~~Gi~K 225 (283)
T PRK07998 153 TEPEKVKTFVERT-GCDMLAVSIGNVHGL------DDIPRIDIPLLKRIAEVSPVPLVIHGGSGIPPDILRSFVNYRVAK 225 (283)
T ss_pred CCHHHHHHHHHHH-CCCEEEEECCCCCCC------CCCCCCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCEE
T ss_conf 9999999999986-889996404664567------878863899999988647987898699999999999999869869
Q ss_pred EEECHHHC
Q ss_conf 99711323
Q gi|254780801|r 208 VRIGSGIF 215 (222)
Q Consensus 208 vRiGs~iF 215 (222)
|-|||.+.
T Consensus 226 iNi~Tel~ 233 (283)
T PRK07998 226 VNIASDLR 233 (283)
T ss_pred EEECHHHH
T ss_conf 99586899
No 138
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=26.65 E-value=49 Score=14.85 Aligned_cols=78 Identities=13% Similarity=0.091 Sum_probs=56.3
Q ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEE-EECCCCCCHHHHHCCCCHH-CCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 9999997298100012100011110000012587302-3024432001320111000-0122222001344333333114
Q gi|254780801|r 41 KIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLR-FIGSLQSNKVSEIVSLFDV-IETVSREKTASLLSLEMIKQSR 118 (222)
Q Consensus 41 ~I~~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wH-fIG~LQsNKvk~i~~~~~~-Ihsvds~~~a~~L~~~~~~~~~ 118 (222)
...-=.-+...++|.+++.-+.++...+.. +++.. +-.+|-..-+..++..+|+ ++.-|+...--.|+..|.+.++
T Consensus 67 NL~RQ~l~~~~~iG~~K~~~a~~~l~~~np--~i~i~~~~~~l~~~na~~li~~~DvVvD~tDn~~tR~lind~c~~~~~ 144 (355)
T PRK05597 67 NLHRQVIHTTAGVGTPKAESAREAMLALNP--DVKVTVSVRRLDWSNALSELADADVILDGSDNFDTRHVASWAAARLGI 144 (355)
T ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHHHCC--CCCEEEEHHHCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCC
T ss_conf 133775654121797979999999998789--974275332157778997752887898767888899999999998699
Q ss_pred CE
Q ss_conf 30
Q gi|254780801|r 119 FL 120 (222)
Q Consensus 119 ~~ 120 (222)
++
T Consensus 145 Pl 146 (355)
T PRK05597 145 PH 146 (355)
T ss_pred CE
T ss_conf 87
No 139
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=26.58 E-value=52 Score=14.64 Aligned_cols=64 Identities=14% Similarity=0.152 Sum_probs=34.7
Q ss_pred CHHHHEECCCC--CCCCHHHHHHHHHHHHHCCCCE----ECCCCCHHHHHHH-HHCCCEEEECHHHCCCCC
Q ss_conf 00111011543--3452058999999988758947----2247773489999-808988997113238999
Q gi|254780801|r 156 NVEGLMCIPPA--MGNPKPHFYLLSEIARECKLTK----LSMGMTRDFELAI-ASGATSVRIGSGIFGERP 219 (222)
Q Consensus 156 ~i~GLMti~p~--~~d~~~~F~~l~~l~~~~~~~~----LSmGMS~D~~~Ai-~~Gst~vRiGs~iFG~R~ 219 (222)
++.|+|.=-|. ..|.......+|+..|..+++. .|=|.+-+--..+ +.|-+..=|||.|..+.+
T Consensus 211 ~l~gVRlDs~~~~~G~~~~l~~~vR~~LD~~G~~~vkI~aSggl~e~~I~~l~~~gID~~GVGt~l~~ap~ 281 (302)
T cd01571 211 KLDGVRLDTPSSRRGVFRYLIREVRWALDIRGYKHVKIFVSGGLDEEDIKELEDVGVDAFGVGTAISKAPP 281 (302)
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCEEECCCCCCCCCC
T ss_conf 03899807998758779999999999997669887489996999999999998579999981854379988
No 140
>pfam01268 FTHFS Formate--tetrahydrofolate ligase.
Probab=26.37 E-value=32 Score=16.02 Aligned_cols=156 Identities=17% Similarity=0.151 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHCCCCHHHCEEEEECCCCC--HHHHHH----HHHCCCCCCCCCCC--------HHHHHHHHCCCCCC
Q ss_conf 99999999999998198964418998718999--999999----99729810001210--------00111100000125
Q gi|254780801|r 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVD--SKKIRV----ALSCGQVIFAENKL--------QEAKKKWIPLRKEW 72 (222)
Q Consensus 7 l~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~--~e~I~~----~~~~G~~~fGENrv--------QE~~~K~~~l~~~~ 72 (222)
+.++...|++. +++| -.-+||+-++.+ .++|.. +-+.|.. +..+.+ .|+-++....-+.
T Consensus 357 ~~NL~~Hi~N~-~~fG----~pvVVAIN~F~~DT~~Ei~~i~~~~~~~g~~-~~~s~~wa~GG~Ga~~LA~~Vv~~~~~- 429 (555)
T pfam01268 357 FANLEKHIENV-KKFG----VPVVVAINRFPTDTDAELALVRELCEEAGAE-AAVSEHWAKGGEGAIELAEAVVEACEK- 429 (555)
T ss_pred HHHHHHHHHHH-HHCC----CCEEEEECCCCCCCHHHHHHHHHHHHHCCCC-EEEEEHHHCCCCCHHHHHHHHHHHHCC-
T ss_conf 88999999999-9719----9769994478998799999999999986998-999404540576769999999999608-
Q ss_pred CCCEEEECCCCC---CHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCC-CEEEEE---EEECCCCCCCCCCCCCHHHHH
Q ss_conf 873023024432---0013201110000122222001344333333114-303688---970046656346570001222
Q gi|254780801|r 73 DVQLRFIGSLQS---NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR-FLPVYI---QVNTGYEIQKSGIMPNQTKDF 145 (222)
Q Consensus 73 ~i~wHfIG~LQs---NKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~-~~~vli---QVN~~~e~~K~G~~p~el~~l 145 (222)
+-.++|+=++.- .|+..|++...--..|+=-..|++=-+..++.+- .+||++ |-.+|.+|+.-|. |.+..=-
T Consensus 430 ~~~f~~lY~~~~~l~eKIe~IA~~IYGA~~V~~s~~A~~~L~~~e~~G~~~lPVCmAKTqySfS~Dp~l~Ga-P~gf~l~ 508 (555)
T pfam01268 430 PSNFKPLYDLELSLEEKIETIATEIYGADGVEFSPKAKKQLARIEKLGFGHLPVCMAKTQYSLSDDPKLKGA-PTGFTLP 508 (555)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHCC-CCCCEEE
T ss_conf 888766579988999999999997158885778999999999999759888886787277775779354299-9998688
Q ss_pred HHHHHCCCC----CCHHH-HEECCCCCCCC
Q ss_conf 344310431----10011-10115433452
Q gi|254780801|r 146 VILCRQKYQ----LNVEG-LMCIPPAMGNP 170 (222)
Q Consensus 146 ~~~i~~~~~----L~i~G-LMti~p~~~d~ 170 (222)
+..++-..+ +-+.| +||||-....|
T Consensus 509 VrevrlsaGAGFIV~i~G~ImtMPGLPk~P 538 (555)
T pfam01268 509 VREVRLSAGAGFIVALTGDIMTMPGLPKVP 538 (555)
T ss_pred EEEEEECCCCCEEEEEECCEEECCCCCCCC
T ss_conf 438998688856999867500069999986
No 141
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=26.19 E-value=53 Score=14.59 Aligned_cols=170 Identities=15% Similarity=0.121 Sum_probs=81.4
Q ss_pred HHCEEEEECCCCC-----------HHHHHHHHHC-CC---------CCCCCCC--CHHHHHHHHCCCCCCCCCEE-EECC
Q ss_conf 4418998718999-----------9999999972-98---------1000121--00011110000012587302-3024
Q gi|254780801|r 26 DSVSLVAVSKMVD-----------SKKIRVALSC-GQ---------VIFAENK--LQEAKKKWIPLRKEWDVQLR-FIGS 81 (222)
Q Consensus 26 ~~v~LiaVtK~~~-----------~e~I~~~~~~-G~---------~~fGENr--vQE~~~K~~~l~~~~~i~wH-fIG~ 81 (222)
+.+.+||=-|..+ +.++...|.. |. ..||=+. .++.++ ...+| =++-. .|-+
T Consensus 48 ~~~~iIAEiKraSPS~G~i~~~~dp~~~A~~Y~~~GA~aiSVLTe~~~F~Gs~~~L~~vr~-~~~lP---iLrKDFIid~ 123 (261)
T PRK00278 48 GKPAVIAEVKKASPSKGVIREDFDPVEIAKAYEEGGAACLSVLTDERFFQGSFEYLRAARA-AVSLP---VLRKDFIIDP 123 (261)
T ss_pred CCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHH-HCCCC---EEEEHEECCH
T ss_conf 9986995545789999986887999999999997799689995130324887999999998-66998---7720101769
Q ss_pred CCCCHHHHHC-CCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHH
Q ss_conf 4320013201-110000122222001344333333114303688970046656346570001222344310431100111
Q gi|254780801|r 82 LQSNKVSEIV-SLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160 (222)
Q Consensus 82 LQsNKvk~i~-~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GL 160 (222)
.|=--.+..- ...=+|-++=+.+....+...+... -+.+|++|+.-.|-. -.+..=..+-+++-|-|
T Consensus 124 ~QI~ea~~~GADaiLLI~~~L~~~~l~~l~~~a~~l--gl~~LvEvh~~~El~----------~a~~~~a~iIGINnRnL 191 (261)
T PRK00278 124 YQIYEARAAGADAILLIVAALDDEQLKELLDLAHEL--GLDVLVEVHDEEELE----------RALKLGAPLIGINNRNL 191 (261)
T ss_pred HHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHH--CCEEEEEECCHHHHH----------HHHHCCCCEEEEECCCC
T ss_conf 999999981898578988755899999999999982--990797768999999----------99847998898746771
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHCCC---CEECCCC--CHHHHHHHHHCCCEEEECHHHCCCC
Q ss_conf 01154334520589999999887589---4722477--7348999980898899711323899
Q gi|254780801|r 161 MCIPPAMGNPKPHFYLLSEIARECKL---TKLSMGM--TRDFELAIASGATSVRIGSGIFGER 218 (222)
Q Consensus 161 Mti~p~~~d~~~~F~~l~~l~~~~~~---~~LSmGM--S~D~~~Ai~~Gst~vRiGs~iFG~R 218 (222)
-|+- -| .....+|...+.- ..---|. ..|....-+.|..-|-||++|.-..
T Consensus 192 ~t~~---vd----~~~~~~L~~~ip~~~~~VsESGI~~~~d~~~l~~~G~davLIGeslm~~~ 247 (261)
T PRK00278 192 KTFE---VD----LDTTERLAPLIPKDRLLVSESGIFTPEDLKRLAKAGADAFLVGESLMRAD 247 (261)
T ss_pred HHCE---EC----HHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHCCCCEEEECHHHHCCC
T ss_conf 1200---37----89999999648999889979999999999999977999999897876799
No 142
>pfam05891 Hydroxy-O-Methy Putative hydroxyindole-O-methyltransferase. This family of proteins is a putative hydroxyindole-O-methyltransferase and by homology, is expected to catalyse the conversion of N-acetyl serotonin to melatonin. The protein is expressed in the tail neuron PVT and in uterine cells [worm-base].
Probab=25.97 E-value=53 Score=14.57 Aligned_cols=106 Identities=15% Similarity=0.184 Sum_probs=54.5
Q ss_pred EECCCCCCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHH-HCCCEEEEEEEE---CCCCCCCCCC---------CC-CHHH
Q ss_conf 30244320013201110000122222001344333333-114303688970---0466563465---------70-0012
Q gi|254780801|r 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK-QSRFLPVYIQVN---TGYEIQKSGI---------MP-NQTK 143 (222)
Q Consensus 78 fIG~LQsNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~-~~~~~~vliQVN---~~~e~~K~G~---------~p-~el~ 143 (222)
=||++-+|=.-.+...+|+++-+...- +.......+ .++.-+ +..+. ...+++|+-+ .+ +++.
T Consensus 65 GIGRVTk~lL~~~f~~VDlVEpv~~Fl--~~ak~~l~~~~~~~~~-~~~~gLQdf~P~~~~YD~IW~QW~~ghLtD~dlv 141 (217)
T pfam05891 65 GIGRVTKNLLLPLFSKVDLVEPVEDFL--AKAKEYLAEEKKKVGN-FFCVGLQDFTPEEGRYDLIWIQWCIGHLTDEDLV 141 (217)
T ss_pred CCCEECHHHHHHHCCEEEEECCCHHHH--HHHHHHHHHCCCCCCE-EEECCCCCCCCCCCEEEEEEEHHHHCCCCHHHHH
T ss_conf 636112667887548135754449999--9999987403797653-8973610168999817699805845218889999
Q ss_pred HHHHHHHCCCCCCHHHHEECCCCCCC-----------CHHHHHHHHHHHHHCCCCE
Q ss_conf 22344310431100111011543345-----------2058999999988758947
Q gi|254780801|r 144 DFVILCRQKYQLNVEGLMCIPPAMGN-----------PKPHFYLLSEIARECKLTK 188 (222)
Q Consensus 144 ~l~~~i~~~~~L~i~GLMti~p~~~d-----------~~~~F~~l~~l~~~~~~~~ 188 (222)
+++..|+. +|+-.|+++|-.+... ....-..++.|+.+.++..
T Consensus 142 ~Fl~RCk~--~L~~~G~IvvKEN~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~ 195 (217)
T pfam05891 142 AFLKRCKS--GLKPNGIIVIKENVTQEGVIFDDVDSSVTRGEASFRKIFKKAGLKL 195 (217)
T ss_pred HHHHHHHH--HCCCCCEEEEEECCCCCCCEECCCCCCCCCCHHHHHHHHHHCCCEE
T ss_conf 99999998--4789864998422367777415654543177999999999859856
No 143
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=25.97 E-value=53 Score=14.57 Aligned_cols=113 Identities=20% Similarity=0.236 Sum_probs=62.6
Q ss_pred CCCHHHHHHHHH-HHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCC---CCCCHHHHEE--------CCCCCCC
Q ss_conf 220013443333-331143036889700466563465700012223443104---3110011101--------1543345
Q gi|254780801|r 102 REKTASLLSLEM-IKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK---YQLNVEGLMC--------IPPAMGN 169 (222)
Q Consensus 102 s~~~a~~L~~~~-~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~---~~L~i~GLMt--------i~p~~~d 169 (222)
|.+++.++-+.. ...+...+|-+.+|. .|..+.|..++|..++++.+.+. .-|++-+-.. .-|....
T Consensus 190 R~Rf~~EIi~~Ir~~vg~~f~i~~Ris~-~~~~~~g~~~~e~~~~~~~l~~~G~vD~l~vs~g~~~~~~~~~~~~p~~~~ 268 (343)
T cd04734 190 RMRFLLEVLAAVRAAVGPDFIVGIRISG-DEDTEGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGM 268 (343)
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEECC-CCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHCCCCCCC
T ss_conf 9899999999999981987761588676-235689899899999999999669976899656754332221100687667
Q ss_pred CHHHHHHH-HHHHHHCCCCEECCCCC---HHHHHHHHHC-CCEEEECHHHC
Q ss_conf 20589999-99988758947224777---3489999808-98899711323
Q gi|254780801|r 170 PKPHFYLL-SEIARECKLTKLSMGMT---RDFELAIASG-ATSVRIGSGIF 215 (222)
Q Consensus 170 ~~~~F~~l-~~l~~~~~~~~LSmGMS---~D~~~Ai~~G-st~vRiGs~iF 215 (222)
+...|..+ +.+++....+.+.-|.= .+.+.+|++| +++|=+|+.+.
T Consensus 269 ~~g~~~~~a~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~gR~~l 319 (343)
T cd04734 269 PPGPFLPLAARIKQAVDLPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHI 319 (343)
T ss_pred CCCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEHHHHHHHH
T ss_conf 764348899999997298599979989999999999879962169789999
No 144
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.85 E-value=33 Score=16.01 Aligned_cols=75 Identities=17% Similarity=0.243 Sum_probs=41.5
Q ss_pred CCCEEEECCCCCCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 87302302443200132011100001222220013443333331143036889700466563465700012223443104
Q gi|254780801|r 73 DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK 152 (222)
Q Consensus 73 ~i~wHfIG~LQsNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~ 152 (222)
|.+--||-.+-.+|+|++.-.-.=++ ++...-+. +...-||+ - +-..-|+|++|+++.+++++.
T Consensus 51 Dke~~fipd~d~ek~rkl~~~d~G~q-l~e~e~~n---------~aDvvVLl--G-GLaMP~~gv~~d~~kel~ee~--- 114 (154)
T COG4090 51 DKEQYFIPDLDFEKARKLELTDHGYQ-LGEREELN---------SADVVVLL--G-GLAMPKIGVTPDDAKELLEEL--- 114 (154)
T ss_pred CHHEEECCCCCHHHHHEEEEECCCEE-CCCCCCCC---------CCCEEEEE--C-CCCCCCCCCCHHHHHHHHHHC---
T ss_conf 32004467758667322465124354-27756666---------44589997--5-644676789979999999843---
Q ss_pred CCCCHHHHEEC
Q ss_conf 31100111011
Q gi|254780801|r 153 YQLNVEGLMCI 163 (222)
Q Consensus 153 ~~L~i~GLMti 163 (222)
.+=++.|+--|
T Consensus 115 ~~kkliGvCfm 125 (154)
T COG4090 115 GNKKLIGVCFM 125 (154)
T ss_pred CCCCEEEEEHH
T ss_conf 89865875189
No 145
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=25.83 E-value=54 Score=14.55 Aligned_cols=75 Identities=23% Similarity=0.294 Sum_probs=47.7
Q ss_pred CCCHHHHHHHHHHCCCCCC--HHHHEECCCCCCCCHHHHHHHHHHHHHCCCCEECC---CCC-HHHHHHHHHCCCEEEEC
Q ss_conf 7000122234431043110--01110115433452058999999988758947224---777-34899998089889971
Q gi|254780801|r 138 MPNQTKDFVILCRQKYQLN--VEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSM---GMT-RDFELAIASGATSVRIG 211 (222)
Q Consensus 138 ~p~el~~l~~~i~~~~~L~--i~GLMti~p~~~d~~~~F~~l~~l~~~~~~~~LSm---GMS-~D~~~Ai~~Gst~vRiG 211 (222)
.|+++.+|++..- ..-|- +--.- |.+...|+-.|..++++++....+---= |.+ .|+.-||..|-+-|-||
T Consensus 156 ~peea~~Fv~~Tg-vD~LAvaiGt~H--G~yk~~p~L~~d~L~~I~~~~~iPLVLHGgSG~~~e~i~~ai~~Gi~KiNi~ 232 (284)
T PRK12737 156 NPDAAAEFVERTG-IDSLAVAIGTAH--GLYKGEPKLDFDRLEEIREKVSIPLVLHGASGVPDEDVKKAISLGICKVNVA 232 (284)
T ss_pred CHHHHHHHHHHHC-CCEEEECCCCCC--CCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCEEEEEEC
T ss_conf 9999999999969-898700037535--6759998578999999998639998966899999999999997795899858
Q ss_pred HHHC
Q ss_conf 1323
Q gi|254780801|r 212 SGIF 215 (222)
Q Consensus 212 s~iF 215 (222)
|.+.
T Consensus 233 T~l~ 236 (284)
T PRK12737 233 TELK 236 (284)
T ss_pred HHHH
T ss_conf 5899
No 146
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=25.76 E-value=54 Score=14.54 Aligned_cols=153 Identities=12% Similarity=0.011 Sum_probs=71.2
Q ss_pred CCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCC
Q ss_conf 00121000111100000125873023024432001320111000012222200134433333311430368897004665
Q gi|254780801|r 53 FAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI 132 (222)
Q Consensus 53 fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQsNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~ 132 (222)
.|-.-+.+++++++..+=..|++.|=||++-.+.+...--..-.||..-..+..++.-+.+.+.++ .++|.+..-.
T Consensus 39 ~G~~~v~~lk~~~p~~~IflDlK~~Di~~tva~~~~~~Gad~~tvh~~~g~~~~~~a~~~a~~~~~----~~~v~l~~~~ 114 (202)
T cd04726 39 EGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYGK----EVQVDLIGVE 114 (202)
T ss_pred HCHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCC----EEEEEEECCC
T ss_conf 689999999987899979998653361679999999707988999666898999999998863696----7999983689
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCCH-HHHEECCCCCCCCHHHHHHHHHHHHHCCCCE-ECCCCC-HHHHHHHHHCCCEEE
Q ss_conf 6346570001222344310431100-1110115433452058999999988758947-224777-348999980898899
Q gi|254780801|r 133 QKSGIMPNQTKDFVILCRQKYQLNV-EGLMCIPPAMGNPKPHFYLLSEIARECKLTK-LSMGMT-RDFELAIASGATSVR 209 (222)
Q Consensus 133 ~K~G~~p~el~~l~~~i~~~~~L~i-~GLMti~p~~~d~~~~F~~l~~l~~~~~~~~-LSmGMS-~D~~~Ai~~Gst~vR 209 (222)
.++.... .... ....+.+ .|.-+-... .......++.+....+... ..=|-. .+-+.|++.|++++=
T Consensus 115 -----~~~~~~~-~~~~-~~~~~~~~~~~d~~~~g---~~~~~~~~~~i~~~~~~~i~VtpGIr~~t~~~a~~~gad~iV 184 (202)
T cd04726 115 -----DPEKRAK-LLKL-GVDIVILHRGIDAQAAG---GWWPEDDLKKVKKLLGVKVAVAGGITPDTLPEFKKAGADIVI 184 (202)
T ss_pred -----CHHHHHH-HHHC-CHHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHCCCCEEE
T ss_conf -----9999998-8856-80588999878777528---997089999998623996788999885409999975999999
Q ss_pred ECHHHCCCCC
Q ss_conf 7113238999
Q gi|254780801|r 210 IGSGIFGERP 219 (222)
Q Consensus 210 iGs~iFG~R~ 219 (222)
||+.|..+-+
T Consensus 185 VGR~It~A~d 194 (202)
T cd04726 185 VGRAITGAAD 194 (202)
T ss_pred ECCCCCCCCC
T ss_conf 8983457999
No 147
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=25.68 E-value=54 Score=14.53 Aligned_cols=44 Identities=27% Similarity=0.433 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHCCCCEECCCC---CHHHHHHHHHCCCEEEECHHHC
Q ss_conf 05899999998875894722477---7348999980898899711323
Q gi|254780801|r 171 KPHFYLLSEIARECKLTKLSMGM---TRDFELAIASGATSVRIGSGIF 215 (222)
Q Consensus 171 ~~~F~~l~~l~~~~~~~~LSmGM---S~D~~~Ai~~Gst~vRiGs~iF 215 (222)
.+.|..++++.+ .+...+-=|- -.....|++.|+.-|-||++|-
T Consensus 167 ~pDf~lvk~l~~-~~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGsAIT 213 (229)
T COG3010 167 EPDFQLVKQLSD-AGCRVIAEGRYNTPEQAKKAIEIGADAVVVGSAIT 213 (229)
T ss_pred CCCHHHHHHHHH-CCCEEEEECCCCCHHHHHHHHHHCCEEEEECCCCC
T ss_conf 972899999986-79939951787999999999971880899874337
No 148
>COG4809 Archaeal ADP-dependent phosphofructokinase/glucokinase [Carbohydrate transport and metabolism]
Probab=25.44 E-value=33 Score=15.97 Aligned_cols=81 Identities=14% Similarity=0.277 Sum_probs=44.8
Q ss_pred HHCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEE-ECCCCCCHHHHH-CC-CCHHCCC--C
Q ss_conf 44189987189999999999972981000121000111100000125873023-024432001320-11-1000012--2
Q gi|254780801|r 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF-IGSLQSNKVSEI-VS-LFDVIET--V 100 (222)
Q Consensus 26 ~~v~LiaVtK~~~~e~I~~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHf-IG~LQsNKvk~i-~~-~~~~Ihs--v 100 (222)
..|....+|-+|+. .+-|.-|-+. --|+....+....|++..+++-|. -+++|..|+++- +. ....++| +
T Consensus 224 ~~vDgaiiSGyq~l---~eey~dg~t~--~~yle~s~e~i~~lk~~~~irvHlEfas~~d~~irk~i~~~il~~v~SvGl 298 (466)
T COG4809 224 KEVDGAIISGYQGL---KEEYSDGSTY--KYYLERSREDIKALKDRENIRVHLEFASIQDRKIRKEILTNILSIVYSVGL 298 (466)
T ss_pred HHCCEEEEECHHHH---HHHCCCCCCH--HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 54130112012666---6663799718--899999999999974244636999852234199999999999866440487
Q ss_pred CCCCHHHHHHH
Q ss_conf 22200134433
Q gi|254780801|r 101 SREKTASLLSL 111 (222)
Q Consensus 101 ds~~~a~~L~~ 111 (222)
|-..+|..++-
T Consensus 299 dE~ElA~vl~v 309 (466)
T COG4809 299 DEVELANVLNV 309 (466)
T ss_pred CHHHHHHHHHH
T ss_conf 89999999986
No 149
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=24.75 E-value=56 Score=14.42 Aligned_cols=78 Identities=17% Similarity=0.199 Sum_probs=42.6
Q ss_pred CCCCHHHHHHHHHHCCCCCCHHHHEECCCCC--CCCHHHHHHHHHHHHHCCCCEECCCCCHHHH-------HHHHHCCCE
Q ss_conf 5700012223443104311001110115433--4520589999999887589472247773489-------999808988
Q gi|254780801|r 137 IMPNQTKDFVILCRQKYQLNVEGLMCIPPAM--GNPKPHFYLLSEIARECKLTKLSMGMTRDFE-------LAIASGATS 207 (222)
Q Consensus 137 ~~p~el~~l~~~i~~~~~L~i~GLMti~p~~--~d~~~~F~~l~~l~~~~~~~~LSmGMS~D~~-------~Ai~~Gst~ 207 (222)
..|+.+.++++...+. +.... .++.-. ..|...+...+.+.+....+ +++=.-+|+- .|++.|++.
T Consensus 142 ~~~~~l~~~~~~a~~~-Gad~I---~l~DT~G~~~P~~v~~~v~~l~~~~~~~-i~~H~HNd~GlAvANalaAv~AGa~~ 216 (378)
T PRK11858 142 TDLDFLIEAAKAAEEA-GADRV---RFCDTVGILDPFTMYELVKELVEAVDIP-IEVHCHNDFGMATANAIAGIEAGATQ 216 (378)
T ss_pred CCHHHHHHHHHHHHHC-CCCEE---EECCCCCCCCHHHHHHHHHHHHHHCCCC-EEEEEECCCCHHHHHHHHHHHHCCCE
T ss_conf 8999999999999974-99899---9636556669999999999999726985-59997077555999999999809998
Q ss_pred EEECHHHCCCCC
Q ss_conf 997113238999
Q gi|254780801|r 208 VRIGSGIFGERP 219 (222)
Q Consensus 208 vRiGs~iFG~R~ 219 (222)
|-.=-.=+|+|.
T Consensus 217 v~~Tv~GiGERa 228 (378)
T PRK11858 217 VHTTVNGLGERA 228 (378)
T ss_pred EEEEEEEEECCC
T ss_conf 998754465465
No 150
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=24.29 E-value=57 Score=14.36 Aligned_cols=104 Identities=15% Similarity=0.135 Sum_probs=52.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEECCCCCCCCHHHHHH
Q ss_conf 01222220013443333331143036889700466563465700012223443104311001110115433452058999
Q gi|254780801|r 97 IETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176 (222)
Q Consensus 97 Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMti~p~~~d~~~~F~~ 176 (222)
|-++=+.+.++.+.+.+... -+.+|++|+...|-.+ ..+.=..+-+++=|-|=|+ .-| ...
T Consensus 101 I~~~L~~~~l~~l~~~a~~l--gl~~LvEvh~~~El~~----------a~~~~a~iIGINnRdL~t~---~vd----~~~ 161 (217)
T cd00331 101 IVAALDDEQLKELYELAREL--GMEVLVEVHDEEELER----------ALALGAKIIGINNRDLKTF---EVD----LNT 161 (217)
T ss_pred HHHHCCHHHHHHHHHHHHHH--CCEEEEEECCHHHHHH----------HHHCCCCEEEECCCCCHHC---EEC----HHH
T ss_conf 88854999999999999994--9827988589999999----------9957998784216771230---347----899
Q ss_pred HHHHHHHCCC---CEECCCCC--HHHHHHHHHCCCEEEECHHHCCCCC
Q ss_conf 9999887589---47224777--3489999808988997113238999
Q gi|254780801|r 177 LSEIARECKL---TKLSMGMT--RDFELAIASGATSVRIGSGIFGERP 219 (222)
Q Consensus 177 l~~l~~~~~~---~~LSmGMS--~D~~~Ai~~Gst~vRiGs~iFG~R~ 219 (222)
..+|...+.- ...--|.+ .|....-+.|..-+-||++|.....
T Consensus 162 ~~~L~~~ip~~~~~IsESGI~~~~di~~l~~~G~d~~LIG~sLm~~~~ 209 (217)
T cd00331 162 TERLAPLIPKDVILVSESGISTPEDVKRLAEAGADAVLIGESLMRAPD 209 (217)
T ss_pred HHHHHHHCCCCCEEEECCCCCCHHHHHHHHHCCCCEEEECHHHHCCCC
T ss_conf 999996489898899827999999999999879999998978867999
No 151
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=24.20 E-value=50 Score=14.75 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=17.0
Q ss_pred EEEEEEECCCCCCCCCCCC--CHHHHHHHHHH
Q ss_conf 3688970046656346570--00122234431
Q gi|254780801|r 121 PVYIQVNTGYEIQKSGIMP--NQTKDFVILCR 150 (222)
Q Consensus 121 ~vliQVN~~~e~~K~G~~p--~el~~l~~~i~ 150 (222)
+|+|=||+ .|+.|+++ +++.+|.+.-.
T Consensus 26 KvvLIVNv---AS~CG~T~qY~~L~~L~~~y~ 54 (183)
T PRK10606 26 NVLLIVNV---ASKCGLTPQYEQLENIQKAWA 54 (183)
T ss_pred CEEEEEEC---CCCCCCCHHHHHHHHHHHHHH
T ss_conf 68999977---755788077999999999841
No 152
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=24.17 E-value=32 Score=16.06 Aligned_cols=23 Identities=17% Similarity=0.521 Sum_probs=14.5
Q ss_pred CCCCEEEECCCCCCHHHHHCCCCHHC
Q ss_conf 58730230244320013201110000
Q gi|254780801|r 72 WDVQLRFIGSLQSNKVSEIVSLFDVI 97 (222)
Q Consensus 72 ~~i~wHfIG~LQsNKvk~i~~~~~~I 97 (222)
.+++||+.||+|+-=.... ||.+
T Consensus 253 ~~~r~t~LGhiqRgg~p~~---fDr~ 275 (347)
T COG0205 253 FETRVTVLGHIQRGGTPSA---FDRV 275 (347)
T ss_pred CCEEEEECCCCCCCCCCCH---HHHH
T ss_conf 4158984463336888965---7899
No 153
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=24.06 E-value=48 Score=14.86 Aligned_cols=67 Identities=21% Similarity=0.246 Sum_probs=44.8
Q ss_pred CCCCC--CCHHHHHHHHCCCCCCCCCEE-EECCCCCCHHHHHCCCCHH-CCCCCCCCHHHHHHHHHHHHCCCE
Q ss_conf 00012--100011110000012587302-3024432001320111000-012222200134433333311430
Q gi|254780801|r 52 IFAEN--KLQEAKKKWIPLRKEWDVQLR-FIGSLQSNKVSEIVSLFDV-IETVSREKTASLLSLEMIKQSRFL 120 (222)
Q Consensus 52 ~fGEN--rvQE~~~K~~~l~~~~~i~wH-fIG~LQsNKvk~i~~~~~~-Ihsvds~~~a~~L~~~~~~~~~~~ 120 (222)
+.|++ ++.-+.++...+.. +++.. +...+-...+..++..+|+ |+..|+.+.-..||..|.+.+++.
T Consensus 74 Dig~~~pKa~aA~~~L~~iNp--~v~I~~~~~~l~~~n~~~li~~~DlViD~tDNf~tR~liNd~c~~~~~Pl 144 (339)
T PRK07688 74 DVKNNLPKAVAAKKRLEEINS--EVRVEAIVQDVTAEELEELVTNVDVIIDATDNFETRFIVNDAAQKYSIPW 144 (339)
T ss_pred HHCCCCHHHHHHHHHHHHCCC--CCEEEEEECCCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCE
T ss_conf 332263779999999983499--86058760039989999998518899987889999999999999959998
No 154
>PRK08227 aldolase; Validated
Probab=23.66 E-value=59 Score=14.28 Aligned_cols=94 Identities=21% Similarity=0.201 Sum_probs=48.6
Q ss_pred EEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEECCCC-CCCCHHHHHHHHHHHHHC----------------
Q ss_conf 688970046656346570001222344310431100111011543-345205899999998875----------------
Q gi|254780801|r 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA-MGNPKPHFYLLSEIAREC---------------- 184 (222)
Q Consensus 122 vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMti~p~-~~d~~~~F~~l~~l~~~~---------------- 184 (222)
|-+|||++.+.. .-..+++..+.++|..+ ++-+.+.|..+.. ..|+ +.+.....++-++
T Consensus 138 Vsv~v~iGs~~E--~~~l~~lg~v~~e~~~~-GmPlla~~~~g~~~~~d~-~~va~aaRia~ELGADiVKt~yt~e~f~~ 213 (291)
T PRK08227 138 VAAQVFIGSEYE--TQSIKNIIQLVDAGLRY-GMPTMAVTAVGKDMVRDA-RYFSLATRIAAEMGAQIIKTYYVEKGFER 213 (291)
T ss_pred EEEEEECCCCHH--HHHHHHHHHHHHHHHHC-CCCEEEEECCCCCCCCCH-HHHHHHHHHHHHHCCCEEECCCCHHHHHH
T ss_conf 999863599328--99999999999999982-998799834687777778-99999999999978998850697345999
Q ss_pred -----CCCEECCCCC--HHH------HHHHHHCCCEEEECHHHCCCCC
Q ss_conf -----8947224777--348------9999808988997113238999
Q gi|254780801|r 185 -----KLTKLSMGMT--RDF------ELAIASGATSVRIGSGIFGERP 219 (222)
Q Consensus 185 -----~~~~LSmGMS--~D~------~~Ai~~Gst~vRiGs~iFG~R~ 219 (222)
..+.|--|=. .|. +-|++.|+.=|=+|+-+|-..+
T Consensus 214 Vv~a~pvPVliaGG~k~~d~e~L~~v~~a~~aGa~Gv~~GRNVfQ~~~ 261 (291)
T PRK08227 214 ITAGCPVPIVIAGGKKLPERDALEMCYQAIDQGASGVDMGRNIFQSDA 261 (291)
T ss_pred HHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCHHHCCCC
T ss_conf 996489978996799898699999999999769936872400235899
No 155
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=23.50 E-value=59 Score=14.26 Aligned_cols=115 Identities=12% Similarity=0.091 Sum_probs=65.1
Q ss_pred CCCHHHHHHHHH-HHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCC---CCCCHHHHEECC--CCCCCCHHHHH
Q ss_conf 220013443333-331143036889700466563465700012223443104---311001110115--43345205899
Q gi|254780801|r 102 REKTASLLSLEM-IKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK---YQLNVEGLMCIP--PAMGNPKPHFY 175 (222)
Q Consensus 102 s~~~a~~L~~~~-~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~---~~L~i~GLMti~--p~~~d~~~~F~ 175 (222)
|.+++.++-+.. +..+...+|.+-++..+-....|.++++..++++.+.+. .-|++.+--.-+ +.......+|.
T Consensus 198 R~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~ 277 (363)
T COG1902 198 RARFLLEVVDAVREAVGADFPVGVRLSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQV 277 (363)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHH
T ss_conf 98899999999999729886699997745467788888999999999998558844799603644578874446641247
Q ss_pred HH-HHHHHHCCCCEECCCC--CH-HHHHHHHHC-CCEEEECHHHCC
Q ss_conf 99-9998875894722477--73-489999808-988997113238
Q gi|254780801|r 176 LL-SEIARECKLTKLSMGM--TR-DFELAIASG-ATSVRIGSGIFG 216 (222)
Q Consensus 176 ~l-~~l~~~~~~~~LSmGM--S~-D~~~Ai~~G-st~vRiGs~iFG 216 (222)
.. ..++.....+..--|+ |- .-+.+|+.| ++||-+|+.+.=
T Consensus 278 ~~a~~i~~~~~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~la 323 (363)
T COG1902 278 EFAARIKKAVRIPVIAVGGINDPEQAEEILASGRADLVAMGRPFLA 323 (363)
T ss_pred HHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCEEEECHHHHC
T ss_conf 8999998860787798689799999999998299888872636650
No 156
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=23.16 E-value=42 Score=15.29 Aligned_cols=53 Identities=21% Similarity=0.141 Sum_probs=21.2
Q ss_pred CHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHC-CCEEEEE---EEECCCCCCCCCC
Q ss_conf 001320111000012222200134433333311-4303688---9700466563465
Q gi|254780801|r 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQS-RFLPVYI---QVNTGYEIQKSGI 137 (222)
Q Consensus 85 NKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~-~~~~vli---QVN~~~e~~K~G~ 137 (222)
.||+.|++...--..|.=-..|++=-+..++.+ ..++|++ |-..|.+|+.-|.
T Consensus 430 eKI~~IA~~IYgA~~V~~s~~A~~~L~~~e~~G~~~lPVCmAKTqyS~S~Dp~l~Ga 486 (524)
T cd00477 430 DKIETIAKKIYGADGVELSPKAKKKLARYEKQGFGNLPVCMAKTQYSLSDDPSLKGA 486 (524)
T ss_pred HHHHHHHHHCCCCCCEEECHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHCCC
T ss_conf 999999997359885878999999999999769988888887078776779242199
No 157
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB; InterPro: IPR005980 NifB is a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack most of the C-terminal region and are excluded from this model.; GO: 0009108 coenzyme biosynthetic process, 0009399 nitrogen fixation.
Probab=23.02 E-value=61 Score=14.20 Aligned_cols=64 Identities=28% Similarity=0.290 Sum_probs=50.7
Q ss_pred EEEEEECCC------CCCCCCCC-----CCHHHHHHHHH-HCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 688970046------65634657-----00012223443-104311001110115433452058999999988758
Q gi|254780801|r 122 VYIQVNTGY------EIQKSGIM-----PNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185 (222)
Q Consensus 122 vliQVN~~~------e~~K~G~~-----p~el~~l~~~i-~~~~~L~i~GLMti~p~~~d~~~~F~~l~~l~~~~~ 185 (222)
|=||.|.-+ -+||=||. |+++..=+..+ .+.+.|.|.|+=.=|..-.|+++.|..+.-+++++.
T Consensus 34 CNiQCNYCNRKyDC~NESRPGV~S~~LtP~qA~~k~~~VA~~i~QLSVvGIAGPGDpLan~~~Tf~Tl~~v~~~~P 109 (461)
T TIGR01290 34 CNIQCNYCNRKYDCANESRPGVVSELLTPEQALAKVKAVAAEIPQLSVVGIAGPGDPLANIKKTFQTLELVAREVP 109 (461)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf 3455455686416678888762013468489999999998506753156325788624575000899999985178
No 158
>PRK13671 hypothetical protein; Provisional
Probab=22.86 E-value=61 Score=14.18 Aligned_cols=15 Identities=13% Similarity=-0.022 Sum_probs=7.6
Q ss_pred HHHHHHHCCCCC--CCC
Q ss_conf 999999729810--001
Q gi|254780801|r 41 KIRVALSCGQVI--FAE 55 (222)
Q Consensus 41 ~I~~~~~~G~~~--fGE 55 (222)
.|..+-.+|++. ||-
T Consensus 85 aV~lL~~lgvd~l~FGs 101 (298)
T PRK13671 85 AIKKLNKHKIDKLIFGS 101 (298)
T ss_pred HHHHHHHCCCCEEEEEC
T ss_conf 99999986999799726
No 159
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=22.85 E-value=61 Score=14.18 Aligned_cols=100 Identities=12% Similarity=0.021 Sum_probs=54.3
Q ss_pred HCCCEEEEEEEECCCCC-CCCCCCCCHHHHHHHHHHCCCC---CCHHHHE-ECC-CCCCCCHHHHH-HHHHHHHHCCCCE
Q ss_conf 11430368897004665-6346570001222344310431---1001110-115-43345205899-9999988758947
Q gi|254780801|r 116 QSRFLPVYIQVNTGYEI-QKSGIMPNQTKDFVILCRQKYQ---LNVEGLM-CIP-PAMGNPKPHFY-LLSEIARECKLTK 188 (222)
Q Consensus 116 ~~~~~~vliQVN~~~e~-~K~G~~p~el~~l~~~i~~~~~---L~i~GLM-ti~-p~~~d~~~~F~-~l~~l~~~~~~~~ 188 (222)
.+...+|.+.++...-. ...|..+++..++++.+.+... +.+ |-+ ..+ +....+...|. ..+.+++....+.
T Consensus 214 vg~df~i~~R~s~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~vs~-g~~~~~~~~~~~~~~g~~~~~~~~ik~~~~~Pv 292 (370)
T cd02929 214 VGDDCAVATRFSVDELIGPGGIESEGEGVEFVEMLDELPDLWDVNV-GDWANDGEDSRFYPEGHQEPYIKFVKQVTSKPV 292 (370)
T ss_pred HCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEE-CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCE
T ss_conf 1998759999894125688999888999999999736579799885-555665677776786436599999998608808
Q ss_pred ECCCCCHH---HHHHHHHCC-CEEEECHHHCC
Q ss_conf 22477734---899998089-88997113238
Q gi|254780801|r 189 LSMGMTRD---FELAIASGA-TSVRIGSGIFG 216 (222)
Q Consensus 189 LSmGMS~D---~~~Ai~~Gs-t~vRiGs~iFG 216 (222)
+--|.=.| .+.+|++|. ++|=+|+.+.-
T Consensus 293 i~vG~i~~p~~ae~~l~~G~aD~V~~gR~lla 324 (370)
T cd02929 293 VGVGRFTSPDKMVEVVKSGILDLIGAARPSIA 324 (370)
T ss_pred EEECCCCCHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 99789799999999998799426453479876
No 160
>PRK08649 inositol-5-monophosphate dehydrogenase; Validated
Probab=22.58 E-value=62 Score=14.14 Aligned_cols=27 Identities=33% Similarity=0.367 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHCCCEEEECHHHCCCCC
Q ss_conf 773489999808988997113238999
Q gi|254780801|r 193 MTRDFELAIASGATSVRIGSGIFGERP 219 (222)
Q Consensus 193 MS~D~~~Ai~~Gst~vRiGs~iFG~R~ 219 (222)
-|+|.--||..||+.|=+||.+=|.-.
T Consensus 266 ~sGDi~KAlaaGA~~VMlGsllAGt~E 292 (368)
T PRK08649 266 TSGDICKAIACGADAVMLGSPLARAAE 292 (368)
T ss_pred CCCHHHHHHHCCCCEEEECCCCCCCCC
T ss_conf 641899998728998987731047666
No 161
>pfam01116 F_bP_aldolase Fructose-bisphosphate aldolase class-II.
Probab=22.43 E-value=62 Score=14.12 Aligned_cols=73 Identities=26% Similarity=0.327 Sum_probs=47.7
Q ss_pred CCCHHHHHHHHHHCCCCC-----CHHHHEECCCCCCCCHHHHHHHHHHHHHCCCCEECCCCCH----HHHHHHHHCCCEE
Q ss_conf 700012223443104311-----0011101154334520589999999887589472247773----4899998089889
Q gi|254780801|r 138 MPNQTKDFVILCRQKYQL-----NVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTR----DFELAIASGATSV 208 (222)
Q Consensus 138 ~p~el~~l~~~i~~~~~L-----~i~GLMti~p~~~d~~~~F~~l~~l~~~~~~~~LSmGMS~----D~~~Ai~~Gst~v 208 (222)
.|+++.+|++... ..-| ..-|+.. ...|+-.|..|+++++.+..+---=|-|| |+.-||+.|-+-|
T Consensus 154 ~peea~~Fv~~Tg-vD~LAvaiG~~HG~yk----~~~p~L~~~~L~~I~~~~~iPLVlHGgSG~~~e~~~~ai~~Gi~Ki 228 (283)
T pfam01116 154 DPEEAKEFVERTG-VDSLAVAIGNVHGVYK----PLEPKLDFDRLKEIQAAVDVPLVLHGGSGVPDEEIRKAIKLGVAKI 228 (283)
T ss_pred CHHHHHHHHHHHC-CCEEEEECCCCCCCCC----CCCCCCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCEEE
T ss_conf 9999999999869-8878764365344468----9998669999999998739987865899999999999998396699
Q ss_pred EECHHHC
Q ss_conf 9711323
Q gi|254780801|r 209 RIGSGIF 215 (222)
Q Consensus 209 RiGs~iF 215 (222)
-|||.+.
T Consensus 229 Ni~T~l~ 235 (283)
T pfam01116 229 NIDTDLQ 235 (283)
T ss_pred EECHHHH
T ss_conf 8575999
No 162
>PRK08328 hypothetical protein; Provisional
Probab=22.19 E-value=45 Score=15.09 Aligned_cols=70 Identities=24% Similarity=0.278 Sum_probs=47.5
Q ss_pred CCCCCCCC-CCHHHHHHHHCCCCCCCCCEE-EECCCCCCHHHHHCCCCHH-CCCCCCCCHHHHHHHHHHHHCCCE
Q ss_conf 98100012-100011110000012587302-3024432001320111000-012222200134433333311430
Q gi|254780801|r 49 GQVIFAEN-KLQEAKKKWIPLRKEWDVQLR-FIGSLQSNKVSEIVSLFDV-IETVSREKTASLLSLEMIKQSRFL 120 (222)
Q Consensus 49 G~~~fGEN-rvQE~~~K~~~l~~~~~i~wH-fIG~LQsNKvk~i~~~~~~-Ihsvds~~~a~~L~~~~~~~~~~~ 120 (222)
-..++|-+ ++.-+.++...+.. +++.. +-+.+...-+..++..+|+ |...|+...-..+++.|.+.+++.
T Consensus 74 ~~~diG~~~K~~~a~~~l~~iNp--~v~i~~~~~~i~~~n~~~ll~~~DlViD~tDn~~tr~~ln~~c~~~~iPl 146 (230)
T PRK08328 74 WEEDVGKNPKPISAKWKLERFNS--DIKIETFVGRLTEENIDEVLKGVDVIVDCLDNFETRYLLDDYAHKKGIPL 146 (230)
T ss_pred CHHHHCCCCHHHHHHHHHHHHCC--CEEEEHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCE
T ss_conf 08774771039999999997599--50575266442377798620059899998899899999999999839977
No 163
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=22.06 E-value=63 Score=14.07 Aligned_cols=14 Identities=14% Similarity=0.316 Sum_probs=5.5
Q ss_pred HHHHCCCEEEECHH
Q ss_conf 99808988997113
Q gi|254780801|r 200 AIASGATSVRIGSG 213 (222)
Q Consensus 200 Ai~~Gst~vRiGs~ 213 (222)
++++--..|.||+.
T Consensus 267 ~~~~aDlvl~lG~r 280 (560)
T PRK08527 267 ALSECDLLISLGAR 280 (560)
T ss_pred HHHCCCEEEEECCC
T ss_conf 98348869981576
No 164
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=22.04 E-value=57 Score=14.36 Aligned_cols=99 Identities=13% Similarity=0.151 Sum_probs=62.4
Q ss_pred HHHHHCCCCHHHCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEE-EECCCCCCHHHHHCCCC
Q ss_conf 99998198964418998718999999999997298100012100011110000012587302-30244320013201110
Q gi|254780801|r 16 NSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLR-FIGSLQSNKVSEIVSLF 94 (222)
Q Consensus 16 ~a~~~~gR~~~~v~LiaVtK~~~~e~I~~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wH-fIG~LQsNKvk~i~~~~ 94 (222)
....++| ...+.|+==-+--...-=+.+|. ..++|.++++-+.++...+.. +++.+ +-..|-...+..+++.+
T Consensus 16 ~~La~aG--vg~i~lvD~D~Ve~SNL~RQ~~~--~~diG~~Ka~~a~~~l~~iNp--~i~i~~~~~~l~~~n~~~l~~~~ 89 (174)
T cd01487 16 VLLARSG--VGNLKLVDFDVVEPSNLNRQQYF--LSQIGEPKVEALKENLREINP--FVKIEAINIKIDENNLEGLFGDC 89 (174)
T ss_pred HHHHHHC--CCEEEEEECCCCCCCCHHCCHHH--HHHCCCHHHHHHHHHHHHHCC--CCEEEEEECCCCHHHHHHHHHCC
T ss_conf 9999818--97399998994666443013247--774797499999999998797--98899991444999999998379
Q ss_pred HH-CCCCCCCCHHHHHHHHHHH-HCCCE
Q ss_conf 00-0122222001344333333-11430
Q gi|254780801|r 95 DV-IETVSREKTASLLSLEMIK-QSRFL 120 (222)
Q Consensus 95 ~~-Ihsvds~~~a~~L~~~~~~-~~~~~ 120 (222)
|+ ++..|+...-..|++.+.+ .++++
T Consensus 90 D~ViD~~Dn~~tr~~l~~~~~~~~~~pl 117 (174)
T cd01487 90 DIVVEAFDNAETKAMLAESLLGNKNKPV 117 (174)
T ss_pred CEEEECCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 9999999998999999999999879959
No 165
>PRK05567 inositol-5'-monophosphate dehydrogenase; Reviewed
Probab=21.83 E-value=64 Score=14.04 Aligned_cols=50 Identities=24% Similarity=0.438 Sum_probs=35.8
Q ss_pred HHHHHHHHHHH---HHCCCCEECCC---CCHHHHHHHHHCCCEEEECHHHCCCCCC
Q ss_conf 05899999998---87589472247---7734899998089889971132389999
Q gi|254780801|r 171 KPHFYLLSEIA---RECKLTKLSMG---MTRDFELAIASGATSVRIGSGIFGERPC 220 (222)
Q Consensus 171 ~~~F~~l~~l~---~~~~~~~LSmG---MS~D~~~Ai~~Gst~vRiGs~iFG~R~~ 220 (222)
.++|....+.+ .+.+.+.+.-| -|+|.--||.+||+.|=+|+.+=|.-..
T Consensus 314 vPq~tAv~~~a~~a~~~~v~iIADGGi~~sGdi~KAla~GAd~VMlGs~lAgt~Es 369 (486)
T PRK05567 314 VPQITAIADAAEAAKKTGIPVIADGGIRYSGDIAKALAAGASAVMLGSMLAGTEEA 369 (486)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHCCCCEEEECCHHCCCCCC
T ss_conf 64699999999999865977996488354357999986589889866121477679
No 166
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=21.57 E-value=65 Score=14.01 Aligned_cols=50 Identities=24% Similarity=0.343 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHH---HCCCCEE---CCCCCHHHHHHHHHCCCEEEECHHHCCCCCC
Q ss_conf 058999999988---7589472---2477734899998089889971132389999
Q gi|254780801|r 171 KPHFYLLSEIAR---ECKLTKL---SMGMTRDFELAIASGATSVRIGSGIFGERPC 220 (222)
Q Consensus 171 ~~~F~~l~~l~~---~~~~~~L---SmGMS~D~~~Ai~~Gst~vRiGs~iFG~R~~ 220 (222)
.|+|....+.++ +.+.+.+ ..--|+|.-.||.+||..|=+||.+=|.-..
T Consensus 324 vPq~tAv~~~a~~a~~~gvpiIADGGIr~sGDi~KAlAaGAd~VMlGsllAGt~Es 379 (499)
T PTZ00314 324 RPQATAVYKVARYAHSRGVPCIADGGIRSSGDIVKALALGASCVMLGSMLAGTEET 379 (499)
T ss_pred CCHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCC
T ss_conf 86056799999986449985991478464318999987289878608410476779
No 167
>KOG3892 consensus
Probab=21.35 E-value=51 Score=14.69 Aligned_cols=14 Identities=50% Similarity=0.351 Sum_probs=9.8
Q ss_pred HHHHHHHHHCCCEE
Q ss_conf 34899998089889
Q gi|254780801|r 195 RDFELAIASGATSV 208 (222)
Q Consensus 195 ~D~~~Ai~~Gst~v 208 (222)
++=|.|+..|+|||
T Consensus 218 ~~gE~AV~sGat~I 231 (407)
T KOG3892 218 RAGEDAVWSGATFI 231 (407)
T ss_pred CCHHHHHHCCCHHH
T ss_conf 74688786110699
No 168
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase; InterPro: IPR014092 Members of this family are examples of pyruvate oxidase (1.2.3.3 from EC), an enzyme with FAD and TPP as cofactors that catalyses the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase (1.2.2.2 from EC) as in Escherichia coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name..
Probab=21.22 E-value=52 Score=14.67 Aligned_cols=71 Identities=18% Similarity=0.154 Sum_probs=46.3
Q ss_pred CCCEEEECCCCC-CHH-----HHHCCCCHHCCCCCCC-CHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCC------
Q ss_conf 873023024432-001-----3201110000122222-001344333333114303688970046656346570------
Q gi|254780801|r 73 DVQLRFIGSLQS-NKV-----SEIVSLFDVIETVSRE-KTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP------ 139 (222)
Q Consensus 73 ~i~wHfIG~LQs-NKv-----k~i~~~~~~Ihsvds~-~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p------ 139 (222)
=|.|.|=|.|=| +.| ..++...|+|=+|.+= .-|+-+ .. -+..++||||.++ |.|.|=..
T Consensus 238 i~~D~Y~a~lGSA~RvA~KpA~E~~~~aD~vlfvG~nypFA~v~-~~----fk~~~~FiQidiD--p~KlGkrH~ld~av 310 (577)
T TIGR02720 238 IIEDDYPAYLGSAYRVASKPANEVLFEADLVLFVGNNYPFAEVL-KA----FKNTKYFIQIDID--PEKLGKRHHLDVAV 310 (577)
T ss_pred CCCCCCCCCCCCCHHHHCCHHHHHEEECCEEEEECCCCCHHHHH-HH----HHCCEEEEEEEEC--HHHCCCCCHHCHHH
T ss_conf 11256874446512222160321001027889943786489999-86----5162678988866--15607530001012
Q ss_pred -CHHHHHHHHHH
Q ss_conf -00122234431
Q gi|254780801|r 140 -NQTKDFVILCR 150 (222)
Q Consensus 140 -~el~~l~~~i~ 150 (222)
.|+..+++.+.
T Consensus 311 ~aDA~~~~~ail 322 (577)
T TIGR02720 311 LADAKKALKAIL 322 (577)
T ss_pred HHHHHHHHHHHH
T ss_conf 420899999996
No 169
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein; InterPro: IPR005666 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). These proteins are involved in the transmembrane transport of sulphate and thiosulphate.; GO: 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0016020 membrane.
Probab=21.13 E-value=60 Score=14.21 Aligned_cols=33 Identities=24% Similarity=0.211 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHCC
Q ss_conf 05899999998875894722477734899998089
Q gi|254780801|r 171 KPHFYLLSEIARECKLTKLSMGMTRDFELAIASGA 205 (222)
Q Consensus 171 ~~~F~~l~~l~~~~~~~~LSmGMS~D~~~Ai~~Gs 205 (222)
++.-.+||+|.+++.++..-. ++|++.|.+---
T Consensus 171 k~LR~WLR~LH~e~~~T~VfV--THD~~EA~evAd 203 (241)
T TIGR00968 171 KELRAWLRKLHDEVHVTTVFV--THDQEEAMEVAD 203 (241)
T ss_pred HHHHHHHHHHCCEEEEEEEEE--ECCHHHHHHHHH
T ss_conf 999999987403056779998--628589988874
No 170
>KOG1014 consensus
Probab=20.77 E-value=67 Score=13.90 Aligned_cols=11 Identities=18% Similarity=0.256 Sum_probs=4.9
Q ss_pred CCEEEECCCCC
Q ss_conf 73023024432
Q gi|254780801|r 74 VQLRFIGSLQS 84 (222)
Q Consensus 74 i~wHfIG~LQs 84 (222)
++.-.|++=|+
T Consensus 74 ~nvvLIsRt~~ 84 (312)
T KOG1014 74 FNVVLISRTQE 84 (312)
T ss_pred CEEEEEECCHH
T ss_conf 87999968889
No 171
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=20.77 E-value=67 Score=13.90 Aligned_cols=54 Identities=15% Similarity=0.084 Sum_probs=34.8
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCC--------------HHHHEE-CCC---------CCCC-----CHHHHHHHHHHHH
Q ss_conf 5634657000122234431043110--------------011101-154---------3345-----2058999999988
Q gi|254780801|r 132 IQKSGIMPNQTKDFVILCRQKYQLN--------------VEGLMC-IPP---------AMGN-----PKPHFYLLSEIAR 182 (222)
Q Consensus 132 ~~K~G~~p~el~~l~~~i~~~~~L~--------------i~GLMt-i~p---------~~~d-----~~~~F~~l~~l~~ 182 (222)
.+=||+.|+|++.++.++.+..+|+ +|.+|- ||= +..| ..+-+.+|.+|++
T Consensus 226 ST~HGCpp~EIe~I~~yll~ek~l~tfiK~NpTlLGy~~~r~~ld~~G~dyi~~~~~~F~~Dlq~~~a~~ml~rL~~la~ 305 (1032)
T PRK09853 226 STMHGCPPHEIEAICRYMLEEKGLNTFVKLNPTLLGYKRVREILDVCGFDYIGLKEESFDHDLQLTDAVEMLERLMALAK 305 (1032)
T ss_pred HHCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEECCHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 20369898999999999985057766885174200589999999860984374175653333435679999999999999
Q ss_pred HCC
Q ss_conf 758
Q gi|254780801|r 183 ECK 185 (222)
Q Consensus 183 ~~~ 185 (222)
+.+
T Consensus 306 ~~~ 308 (1032)
T PRK09853 306 EKS 308 (1032)
T ss_pred HCC
T ss_conf 729
No 172
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH; InterPro: IPR011909 Glutaredoxins , , , also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system . Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond . It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterised by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase .; GO: 0006118 electron transport, 0045454 cell redox homeostasis.
Probab=20.70 E-value=39 Score=15.46 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=13.1
Q ss_pred CCCCCCCCCCCCCHHHHHH
Q ss_conf 0466563465700012223
Q gi|254780801|r 128 TGYEIQKSGIMPNQTKDFV 146 (222)
Q Consensus 128 ~~~e~~K~G~~p~el~~l~ 146 (222)
.+|+.+=|||.|+.|..|+
T Consensus 54 ~~g~~~~SGFrPD~lk~L~ 72 (72)
T TIGR02194 54 AEGDESWSGFRPDKLKALA 72 (72)
T ss_pred ECCCEEEECCCHHHHCCCC
T ss_conf 6797002133858740039
No 173
>PRK01060 endonuclease IV; Provisional
Probab=20.56 E-value=68 Score=13.87 Aligned_cols=37 Identities=11% Similarity=0.038 Sum_probs=27.9
Q ss_pred CEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 30368897004665634657000122234431043110
Q gi|254780801|r 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLN 156 (222)
Q Consensus 119 ~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~ 156 (222)
...++|+ |++|.-+.-|...+|+..+++.+..-+.+-
T Consensus 139 ~~~ilLE-n~AGqG~~lG~~~eeL~~ii~~v~~~~rvG 175 (281)
T PRK01060 139 GVTIVLE-NTAGQGSELGRRFEELARIIDGVEDKSRVG 175 (281)
T ss_pred CCEEEEE-ECCCCCCCCCCCHHHHHHHHHHCCCCCCEE
T ss_conf 8679997-248999826878999999999626846448
No 174
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=20.23 E-value=21 Score=17.28 Aligned_cols=41 Identities=24% Similarity=0.330 Sum_probs=23.6
Q ss_pred EEEEECCCCCHHHHHHHHHC---------CCCCCCCCCCHHHHHHHHCCC
Q ss_conf 89987189999999999972---------981000121000111100000
Q gi|254780801|r 29 SLVAVSKMVDSKKIRVALSC---------GQVIFAENKLQEAKKKWIPLR 69 (222)
Q Consensus 29 ~LiaVtK~~~~e~I~~~~~~---------G~~~fGENrvQE~~~K~~~l~ 69 (222)
.++.|+|..+.++|+.||.- .-..=.|.+-+|..+.++.|.
T Consensus 8 ~vLGV~~~As~~EIKkAYRkLA~kyHPD~n~d~~AeekFkeI~eAYeVLs 57 (306)
T PRK10266 8 AIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLS 57 (306)
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 87598999899999999999999868798669289999999999999868
Done!