Query gi|254780801|ref|YP_003065214.1| hypothetical protein CLIBASIA_03460 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 222
No_of_seqs 125 out of 3258
Neff 5.9
Searched_HMMs 33803
Date Wed Jun 1 14:38:11 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780801.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2vd8_A Alanine racemase; pyri 100.0 1.5E-30 4.3E-35 226.5 12.0 202 3-221 3-220 (221)
2 >1ct5_A Protein (yeast hypothe 100.0 7.9E-30 2.3E-34 221.6 15.5 219 3-221 14-250 (256)
3 >3cpg_A Uncharacterized protei 100.0 9.8E-28 2.9E-32 207.5 17.8 219 3-221 25-274 (282)
4 >1w8g_A YGGS, hypothetical UPF 99.9 1.7E-23 4.9E-28 179.0 18.0 219 3-221 4-232 (234)
5 >3kw3_A Alanine racemase; niai 99.9 2.3E-25 6.9E-30 191.5 8.0 209 7-220 1-215 (215)
6 >1rcq_A Catabolic alanine race 99.9 3E-24 8.9E-29 184.0 10.3 201 9-221 2-210 (211)
7 >3llx_A Predicted amino acid a 99.9 1.1E-22 3.3E-27 173.5 7.7 199 3-214 3-218 (218)
8 >3co8_A Alanine racemase; prot 99.9 2.3E-22 6.9E-27 171.3 6.0 202 3-221 4-219 (220)
9 >1vfs_A Alanine racemase; TIM- 99.9 1.7E-21 5E-26 165.5 9.3 193 25-221 14-222 (223)
10 >3e5p_A Alanine racemase; ALR, 99.8 6.5E-21 1.9E-25 161.6 10.4 206 9-221 3-220 (221)
11 >1xfc_A Alanine racemase; alph 99.8 2.7E-20 8.1E-25 157.4 11.4 204 3-221 3-222 (222)
12 >2rjg_A Alanine racemase; alph 99.8 2.2E-20 6.4E-25 158.1 6.9 201 3-221 3-211 (212)
13 >1bd0_A Alanine racemase; isom 99.8 3.5E-19 1E-23 149.9 10.8 202 10-221 3-217 (218)
14 >2dy3_A Alanine racemase; alph 99.8 7.2E-19 2.1E-23 147.9 10.1 201 7-220 1-216 (216)
15 >3hur_A Alanine racemase; stru 99.7 9.2E-17 2.7E-21 133.7 5.9 198 3-221 4-221 (243)
16 >2p3e_A Diaminopimelate decarb 99.5 1.4E-13 4.1E-18 112.3 8.0 202 10-221 3-226 (243)
17 >3gwq_A D-serine deaminase; YP 99.4 1.2E-12 3.7E-17 105.9 7.1 193 28-220 1-216 (224)
18 >2plj_A Lysine/ornithine decar 98.7 1.3E-08 3.8E-13 78.8 3.3 203 3-219 3-223 (233)
19 >1twi_A Diaminopimelate decarb 98.6 1.3E-06 3.8E-11 65.4 11.6 185 3-192 3-211 (258)
20 >2j66_A BTRK, decarboxylase; b 98.4 3E-06 8.9E-11 62.9 9.6 167 27-197 2-194 (235)
21 >2o0t_A Diaminopimelate decarb 98.3 4.2E-06 1.2E-10 61.9 8.9 176 3-192 3-209 (258)
22 >2qgh_A Diaminopimelate decarb 98.1 5.9E-10 1.7E-14 87.9 -14.4 204 10-217 3-228 (244)
23 >2nva_A Arginine decarboxylase 97.8 9.9E-05 2.9E-09 52.7 8.2 178 3-195 3-193 (233)
24 >1f3t_A ODC, ornithine decarbo 97.8 0.00018 5.3E-09 51.0 9.1 178 3-195 3-193 (234)
25 >1knw_A Diaminopimelate decarb 97.0 0.0061 1.8E-07 40.7 8.5 166 25-192 11-192 (240)
26 >2yxx_A Diaminopimelate decarb 96.9 0.013 3.8E-07 38.5 9.6 158 26-192 17-192 (231)
27 >3btn_A Antizyme inhibitor 1; 96.4 0.0088 2.6E-07 39.6 5.9 162 27-192 1-175 (216)
28 >2oo0_A ODC, ornithine decarbo 95.5 0.062 1.8E-06 33.9 6.9 160 28-192 2-175 (219)
29 >7odc_A Protein (ornithine dec 95.0 0.071 2.1E-06 33.5 6.1 160 28-192 2-175 (219)
30 >2fds_A Orotidine-monophosphat 82.4 0.34 1E-05 28.9 0.3 165 53-219 132-322 (352)
31 >3f4w_A Putative hexulose 6 ph 78.6 3 9E-05 22.5 4.1 174 29-220 2-196 (211)
32 >1eix_A Orotidine 5'-monophosp 76.9 6.1 0.00018 20.5 5.8 183 28-220 16-230 (245)
33 >2h8z_A Xenobiotic reductase A 74.0 7.2 0.00021 20.0 7.0 116 102-217 162-286 (315)
34 >2w6r_A Imidazole glycerol pho 72.6 6.7 0.0002 20.2 4.6 84 133-217 147-235 (266)
35 >3g1v_A Orotidine 5'-phosphate 70.9 8.4 0.00025 19.5 6.4 179 27-219 13-210 (228)
36 >3ldv_A Orotidine 5'-phosphate 68.0 0.96 2.8E-05 25.9 -0.6 184 26-220 27-243 (255)
37 >3bpw_A Orotidine 5'-phosphate 66.3 2.4 7.2E-05 23.2 1.2 143 73-220 155-321 (342)
38 >2yyu_A Orotidine 5'-phosphate 65.3 1.4 4.1E-05 24.8 -0.2 185 28-220 6-224 (246)
39 >1vyr_A Pentaerythritol tetran 63.8 12 0.00034 18.6 6.4 117 101-217 167-287 (322)
40 >3cu2_A Ribulose-5-phosphate 3 62.1 12 0.00037 18.4 4.7 184 27-219 17-225 (237)
41 >2gou_A Oxidoreductase, FMN-bi 59.6 14 0.00041 18.1 5.8 188 12-217 84-286 (323)
42 >2czd_A Orotidine 5'-phosphate 58.7 14 0.00042 18.0 4.8 149 53-220 38-194 (208)
43 >1f07_A Coenzyme F420-dependen 54.6 17 0.00049 17.6 5.6 10 203-212 217-226 (246)
44 >1yad_A Regulatory protein TEN 52.6 18 0.00052 17.4 5.3 66 154-219 130-200 (221)
45 >1rpx_A Protein (ribulose-phos 48.8 16 0.00048 17.6 3.0 168 38-220 25-216 (230)
46 >3gdm_A Orotidine 5'-phosphate 48.7 15 0.00043 17.9 2.8 187 26-220 29-244 (267)
47 >3jr2_A Hexulose-6-phosphate s 47.4 10 0.00031 18.9 1.8 47 171-217 152-200 (218)
48 >3exr_A RMPD (hexulose-6-phosp 47.3 11 0.00033 18.7 2.0 48 172-219 155-204 (221)
49 >1ps9_A 2,4-dienoyl-COA reduct 46.0 22 0.00066 16.7 8.2 113 103-216 191-315 (333)
50 >1p80_A Catalase HPII; beta ba 44.6 18 0.00054 17.3 2.7 63 104-168 194-256 (457)
51 >2v82_A 2-dehydro-3-deoxy-6-ph 44.5 23 0.00069 16.5 3.4 36 185-220 148-185 (212)
52 >3inp_A D-ribulose-phosphate 3 43.4 20 0.0006 16.9 2.8 30 190-219 202-231 (246)
53 >3lab_A Putative KDPG (2-keto- 41.7 16 0.00048 17.6 2.1 172 26-217 11-193 (217)
54 >3ceu_A Thiamine phosphate pyr 41.1 26 0.00078 16.2 5.3 68 152-219 105-180 (210)
55 >1mxs_A KDPG aldolase; 2-keto- 41.0 15 0.00045 17.8 1.9 38 181-218 162-201 (225)
56 >1thf_D HISF protein; thermoph 40.9 24 0.0007 16.5 2.8 47 171-217 181-230 (253)
57 >1tqj_A Ribulose-phosphate 3-e 40.3 27 0.0008 16.1 7.6 172 38-219 19-209 (230)
58 >1qwg_A PSL synthase;, (2R)-ph 40.1 12 0.00034 18.6 1.2 120 94-216 99-231 (251)
59 >2e28_A Pyruvate kinase, PK; a 39.3 28 0.00083 16.0 5.5 56 5-63 42-104 (243)
60 >1xi3_A Thiamine phosphate pyr 39.3 22 0.00066 16.7 2.5 173 26-219 13-198 (215)
61 >2fli_A Ribulose-phosphate 3-e 38.6 25 0.00073 16.4 2.6 30 189-218 175-205 (220)
62 >1vqt_A Orotidine 5'-phosphate 37.8 16 0.00046 17.7 1.5 172 27-220 13-201 (213)
63 >1dbt_A Orotidine 5'-phosphate 37.6 21 0.00063 16.8 2.2 182 30-220 7-223 (239)
64 >1o4u_A Type II quinolic acid 37.5 12 0.00034 18.6 0.8 59 154-215 54-113 (113)
65 >3cmm_A Ubiquitin-activating e 36.6 22 0.00065 16.7 2.1 70 51-120 83-158 (237)
66 >2qjg_A Putative aldolase MJ04 36.1 31 0.00093 15.7 6.1 30 190-219 210-245 (273)
67 >2vc6_A MOSA, dihydrodipicolin 36.1 31 0.00093 15.7 3.2 27 189-215 183-209 (236)
68 >2g7z_A Conserved hypothetical 35.5 19 0.00057 17.1 1.7 75 122-203 30-107 (157)
69 >1q6o_A Humps, 3-keto-L-gulona 35.2 14 0.0004 18.1 0.9 49 171-219 149-199 (216)
70 >1vs1_A 3-deoxy-7-phosphoheptu 34.8 33 0.00097 15.5 5.6 12 138-149 157-168 (276)
71 >1vhc_A Putative KHG/KDPG aldo 34.7 19 0.00055 17.2 1.5 168 26-217 15-191 (224)
72 >1tqx_A D-ribulose-5-phosphate 34.5 33 0.00099 15.5 10.8 170 36-218 18-208 (227)
73 >2yw3_A 4-hydroxy-2-oxoglutara 33.9 27 0.0008 16.1 2.2 166 26-220 11-188 (207)
74 >1ujp_A Tryptophan synthase al 33.8 28 0.00083 16.0 2.3 47 171-217 188-235 (271)
75 >3hv0_A Tryptophanyl-tRNA synt 32.6 32 0.00096 15.6 2.4 42 161-202 221-276 (292)
76 >1i4n_A Indole-3-glycerol phos 31.8 28 0.00084 16.0 2.0 164 38-219 41-217 (230)
77 >3kts_A Glycerol uptake operon 29.8 40 0.0012 15.0 3.5 45 171-215 136-183 (192)
78 >3c4u_A Fructose-bisphosphate 29.6 40 0.0012 15.0 4.5 97 119-215 126-259 (307)
79 >1wa3_A 2-keto-3-deoxy-6-phosp 29.6 37 0.0011 15.2 2.3 165 26-217 8-184 (205)
80 >3cmm_A Ubiquitin-activating e 29.1 41 0.0012 14.9 2.7 70 47-120 72-142 (207)
81 >1wbh_A KHG/KDPG aldolase; lya 29.1 26 0.00078 16.2 1.5 168 26-217 14-190 (214)
82 >3fem_A Pyridoxine biosynthesi 28.7 41 0.0012 14.9 2.9 41 178-218 199-242 (297)
83 >2nvu_B Maltose binding protei 28.6 32 0.00096 15.6 1.9 80 38-119 60-140 (319)
84 >1rd5_A Tryptophan synthase al 28.0 38 0.0011 15.2 2.1 47 171-217 187-236 (262)
85 >1eg7_A Formyltetrahydrofolate 27.6 17 0.00051 17.5 0.3 79 85-164 10-97 (98)
86 >1q7z_A 5-methyltetrahydrofola 27.1 44 0.0013 14.7 3.0 67 93-163 139-208 (294)
87 >1y8q_B Anthracycline-, ubiqui 27.1 41 0.0012 14.9 2.2 69 50-120 65-136 (222)
88 >1h5y_A HISF; histidine biosyn 25.9 46 0.0014 14.6 5.2 86 132-218 144-234 (253)
89 >1vcv_A Probable deoxyribose-p 25.8 11 0.00031 18.9 -1.0 47 173-219 170-221 (226)
90 >1qop_A Tryptophan synthase al 25.5 47 0.0014 14.5 2.6 45 172-216 192-239 (268)
91 >1gvf_A Tagatose-bisphosphate 25.5 47 0.0014 14.5 4.5 76 138-215 156-236 (286)
92 >3big_A Fructose-1,6-bisphosph 25.0 48 0.0014 14.4 5.0 43 10-52 26-68 (160)
93 >3h5n_A MCCB protein; ubiquiti 24.9 48 0.0014 14.4 3.0 75 46-120 73-148 (264)
94 >3do6_A Formate--tetrahydrofol 24.7 20 0.00059 17.0 0.2 80 85-165 10-98 (99)
95 >1zud_1 Adenylyltransferase TH 24.7 34 0.001 15.5 1.4 70 49-120 75-146 (251)
96 >3daq_A DHDPS, dihydrodipicoli 24.2 50 0.0015 14.4 2.9 22 146-167 87-108 (229)
97 >2isw_A Putative fructose-1,6- 24.2 50 0.0015 14.4 5.1 97 119-215 127-259 (323)
98 >2yxg_A DHDPS, dihydrodipicoli 24.0 50 0.0015 14.3 3.0 26 120-147 127-152 (289)
99 >1vc4_A Indole-3-glycerol phos 23.1 46 0.0014 14.6 1.8 65 156-220 176-245 (254)
100 >2nv1_A Pyridoxal biosynthesis 23.0 52 0.0015 14.2 2.7 35 184-218 208-245 (305)
101 >2bdq_A Copper homeostasis pro 22.4 54 0.0016 14.1 5.4 66 155-220 139-216 (224)
102 >2tps_A Protein (thiamin phosp 21.8 55 0.0016 14.0 2.2 44 175-218 162-207 (227)
103 >1rvg_A Fructose-1,6-bisphosph 21.7 55 0.0016 14.0 6.3 98 118-215 123-257 (305)
104 >1bwd_A ADT, protein (inosamin 21.7 23 0.00069 16.6 0.1 17 204-220 14-30 (59)
105 >1to3_A Putative aldolase YIHT 20.2 59 0.0018 13.8 8.6 119 97-218 131-261 (304)
106 >1viz_A PCRB protein homolog; 20.2 59 0.0018 13.8 4.8 78 138-217 136-216 (240)
No 1
>>2vd8_A Alanine racemase; pyridoxal 5'-phosphate, peptidoglycan synthesis, PLP, OPPF, L-alanine, isomerase, D- alanine, pyridoxal phosphate; HET: MLY LLP; 1.47A {Bacillus anthracis} PDB: 2vd9_A* (A:19-239)
Probab=99.97 E-value=1.5e-30 Score=226.53 Aligned_cols=202 Identities=17% Similarity=0.120 Sum_probs=172.5
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHCEEEEEC----CCCCHHHHH-HHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEE
Q ss_conf 89999999999999999819896441899871----899999999-9997298100012100011110000012587302
Q gi|254780801|r 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVS----KMVDSKKIR-VALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLR 77 (222)
Q Consensus 3 i~~nl~~i~~~I~~a~~~~gR~~~~v~LiaVt----K~~~~e~I~-~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wH 77 (222)
|..|++.+++++ ++.++++||+ |++....|. .++++|++.||++++||+..+..... +..||
T Consensus 3 l~~Ni~~i~~~~----------~~~~~~~avvK~~ayg~g~~~v~~~~~~~G~~~~~v~~~~Ea~~~~~~~~---~~~il 69 (221)
T 2vd8_A 3 IYNNVTHIXEFI----------PSDVEIFAVVXGNAYGHDYVPVAXIALEAGATRLAVAFLDEALVLRRAGI---TAPIL 69 (221)
T ss_dssp HHHHHHHHHHHS----------CTTCEEEEECHHHHHTTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHTTC---CSCEE
T ss_pred HHHHHHHHHHHC----------CCCCEEEEEEEEECCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHCC---CCCEE
T ss_conf 999999999747----------99987999993602658879999999987979999826999999997189---99868
Q ss_pred EECCCCCCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCC-HHHHHHHHHHCCCCCC
Q ss_conf 302443200132011100001222220013443333331143036889700466563465700-0122234431043110
Q gi|254780801|r 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN-QTKDFVILCRQKYQLN 156 (222)
Q Consensus 78 fIG~LQsNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~-el~~l~~~i~~~~~L~ 156 (222)
++|++|+++++.++. .+++++|||.+.++.|++.+. .+++++|+|+|+++ .+|.||.|+ ++.+++..+..+++|+
T Consensus 70 ~~~~~~~~~~~~~~~-~~~~~~v~s~~~~~~l~~~a~-~~~~~~v~i~id~g--~~R~G~~~~~~~~~l~~~i~~~~~l~ 145 (221)
T 2vd8_A 70 VLGPSPPRDINVAAE-NDVALTVFQXEWVDEAIXLWD-GSSTMXYHINFDSG--MGRIGIRERXELXGFLXSLEGAPFLE 145 (221)
T ss_dssp ECSCCCGGGHHHHHH-TTEEEECCCHHHHHHHHHHCC-SSCCEEEEEEBCSS--CCSSSBCCHHHHHHHHHHHTTCTTEE
T ss_pred EECCCCHHHHHHHHC-CCCCCCCCCHHHHHHHHHHHH-CCCCEEEEEEECCC--CCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 865888355444430-354231033889999999862-35541699984156--67778783899999999997589975
Q ss_pred HHHHEECCCCCCCC-----HHHHHHHHHHHHHC-----CCCEECCCCCHHHHHHHHHCCCEEEECHHHCCCCCCC
Q ss_conf 01110115433452-----05899999998875-----8947224777348999980898899711323899999
Q gi|254780801|r 157 VEGLMCIPPAMGNP-----KPHFYLLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221 (222)
Q Consensus 157 i~GLMti~p~~~d~-----~~~F~~l~~l~~~~-----~~~~LSmGMS~D~~~Ai~~Gst~vRiGs~iFG~R~~~ 221 (222)
++|+||+.+...++ +..|..+.++.+.+ ....+|+|||.+|..+.++|+|+||+|++|||.||++
T Consensus 146 l~Gi~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~S~~~~~~~~~~~~~vR~G~~lyG~~p~~ 220 (221)
T 2vd8_A 146 LEGVYTHFATADEVETSYFDXQYNTFLEQLSWLXEFGVDPXFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSV 220 (221)
T ss_dssp EEEEECCCSSTTSSSCHHHHHHHHHHHHHHHHHHHTTCCCCSEECCCHHHHTTCTTCCTTEEEESTTTTTCCSCT
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHEEEHHHHHHHCCCCCCCCCCCCCCCEECCCCCC
T ss_conf 668776537565322156788999999999999860885010000102554348433565014574223367885
No 2
>>1ct5_A Protein (yeast hypothetical protein, selenoMet); TIM barrel, pyridoxal-5'-phosphate, selenomethionine, MAD, structural genomics, PSI; HET: PLP; 2.00A {Saccharomyces cerevisiae} (A:)
Probab=99.97 E-value=7.9e-30 Score=221.58 Aligned_cols=219 Identities=26% Similarity=0.249 Sum_probs=192.6
Q ss_pred HHHHHHHHHHHHHHHHHHC--CCCHHHCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEC
Q ss_conf 8999999999999999981--98964418998718999999999997298100012100011110000012587302302
Q gi|254780801|r 3 LGNKLQVFKQKIENSAILA--KRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80 (222)
Q Consensus 3 i~~nl~~i~~~I~~a~~~~--gR~~~~v~LiaVtK~~~~e~I~~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG 80 (222)
|..|++.+++++..++..+ ..+...+.+.+|+|+++...|..++++|++.||+++++|+........+..-+.||++|
T Consensus 14 l~~Nl~~i~~~i~~~~~~~v~kanayg~~~~~~~Kt~~~~~i~~~~~~G~~~~~va~~~Ea~~l~~~~~~~~~~~~~~~~ 93 (256)
T 1ct5_A 14 LIAQYESVREVVNAEAKNVHVNENASKILLLVVSKLKPASDIQILYDHGVREFGENYVQELIEKAKLLPDDIKWHFIGGL 93 (256)
T ss_dssp HHHHHHHHHHHHHHHHHTC-------CCEEEEECTTSCHHHHHHHHHHTCCEEEECCHHHHHHHHHHSCTTCEEEECSCC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEECCHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 99999999999999998714899957669999979989999999998599601124599999999873789559887899
Q ss_pred CCCCCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHH---HCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHH---HCCCC
Q ss_conf 44320013201110000122222001344333333---1143036889700466563465700012223443---10431
Q gi|254780801|r 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK---QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC---RQKYQ 154 (222)
Q Consensus 81 ~LQsNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~---~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i---~~~~~ 154 (222)
..+.++........+.+++||++..++.+++.+.+ .+...+|+++|+++...+|+||.|+++.++++.+ ...++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~~v~i~i~id~G~~R~G~~~~e~~~l~~~~~~~~~~~~ 173 (256)
T 1ct5_A 94 QTNKCKDLAKVPNLYSVETIDSLKKAKKLNESRAKFQPDCNPILCNVQINTSHEDQKSGLNNEAEIFEVIDFFLSEECKY 173 (256)
T ss_dssp CGGGHHHHHHCTTEEEEEEECSHHHHHHHHHHHHHHCTTSCCEEEEEEBCCSSSCCSSSBCCHHHHHHHHHHHHSTTCCS
T ss_pred CCCHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 75008999701122155123549999999999998478778724899996587667789993899999999999864878
Q ss_pred CCHHHHEECCCCCCCC-----HHHHHHHHHHHHHC-----CCCEECCCCCHHHHHHHHHCCCEEEECHHHCCCCCCC
Q ss_conf 1001110115433452-----05899999998875-----8947224777348999980898899711323899999
Q gi|254780801|r 155 LNVEGLMCIPPAMGNP-----KPHFYLLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221 (222)
Q Consensus 155 L~i~GLMti~p~~~d~-----~~~F~~l~~l~~~~-----~~~~LSmGMS~D~~~Ai~~Gst~vRiGs~iFG~R~~~ 221 (222)
|++.|+||.++..+++ +..|..++++.+.+ ....+|||+|.+|..+.++|.|+||+|+.+||.|||.
T Consensus 174 l~l~Gi~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~g~S~~~~~~~~~~~t~vR~G~~lyg~~~~~ 250 (256)
T 1ct5_A 174 IKLNGLXTIGSWNVSHEDSKENRDFATLVEWKKKIDAKFGTSLKLSXGXSADFREAIRQGTAEVRIGTDIFGARPPK 250 (256)
T ss_dssp EEEEEEECCCCCC---------HHHHHHHHHHHHHHHHHCCCCEEECCCTTTHHHHHHTTCSEEEESHHHHC-----
T ss_pred CCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHCCCCEEECCCCCCCCCCCC
T ss_conf 76358054168889821017889999999999998606699998878253049999986899897680031799987
No 3
>>3cpg_A Uncharacterized protein; unknown protein, TIM barrel, monomer, structural genomics, PSI-2, protein structure initiative; 1.71A {Bifidobacterium adolescentis ATCC15703} (A:)
Probab=99.96 E-value=9.8e-28 Score=207.48 Aligned_cols=219 Identities=29% Similarity=0.377 Sum_probs=193.4
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCC--------------
Q ss_conf 899999999999999998198964418998718999999999997298100012100011110000--------------
Q gi|254780801|r 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL-------------- 68 (222)
Q Consensus 3 i~~nl~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~~~~~~G~~~fGENrvQE~~~K~~~l-------------- 68 (222)
+..|++.++.+|...+.++|+.|..|.+++|+|++....+..+|.+|.+.|+++..++..-+....
T Consensus 25 l~~nl~~~~~~i~~l~~~~g~~p~~v~~~~~iK~~~~~~~~~a~~~g~~~~a~k~~~~~~~~~~~~~~G~~~~~vs~~E~ 104 (282)
T 3cpg_A 25 ITDGVHRVLDRIAAAEEQAGREAGSVRLLAATKTRDIGEIXAAIDAGVRXIGENRPQEVTAKAEGLARRCAERGFSLGVA 104 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCTTSSEEEEECTTCCHHHHHHHHHTTCCCEEESCHHHHHHHHHHHHHHHHHTTEEECCC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999999999819990116999997898999999999869821110049999999997666432210000000
Q ss_pred ----C-CCCCCCEEEECCCCCCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHH
Q ss_conf ----0-12587302302443200132011100001222220013443333331143036889700466563465700012
Q gi|254780801|r 69 ----R-KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143 (222)
Q Consensus 69 ----~-~~~~i~wHfIG~LQsNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~ 143 (222)
. ..++.+|||+|+.+++.+..++....++.+|||++.++.+.+.+.+.++.++++++||++...+|+|++++++.
T Consensus 105 ~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~vds~~~l~~l~~~~~~~~~~~~v~i~i~~~~~~~rfG~~~~~~~ 184 (282)
T 3cpg_A 105 GAAPDAAAEHIPFHLIGQLQSNKIGKVLPVVDTIESVDSIDLAEKISRRAVARGITVGVLLEVNESGEESKSGCDPAHAI 184 (282)
T ss_dssp ------CCEEECEEECSCCCGGGHHHHTTTCSEEEEECCHHHHHHHHHHHHHHTCCEEEEEEBCCSSCTTSSSBCGGGHH
T ss_pred CCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHH
T ss_conf 00123457605760477466789999987458065569899999999999976998538999804898766899999999
Q ss_pred HHHHHHHCCCCCCHHHHEECCCCCCCC---HHHHHHHHHHHHHC---------CCCEECCCCCHHHHHHHHHCCCEEEEC
Q ss_conf 223443104311001110115433452---05899999998875---------894722477734899998089889971
Q gi|254780801|r 144 DFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIAREC---------KLTKLSMGMTRDFELAIASGATSVRIG 211 (222)
Q Consensus 144 ~l~~~i~~~~~L~i~GLMti~p~~~d~---~~~F~~l~~l~~~~---------~~~~LSmGMS~D~~~Ai~~Gst~vRiG 211 (222)
++++.+.++++|++.||||..+...++ +..|....++++++ ....+|+|+|.+...+.++|+|+||+|
T Consensus 185 ~~~~~i~~~~~l~~~Gi~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~vrpG 264 (282)
T 3cpg_A 185 RIAQKIGTLDGIELQGLXTIGAHVHDETVIRRGFSHLRKTRDLILASGEPGTDRCRELSXGXTGDXELAIAEGSTIVRVG 264 (282)
T ss_dssp HHHHHHHTCTTEEEEEEECCCCCSSCHHHHHHHHHHHHHHHHHHHHHCCTTCTTCCEEECCCTTTHHHHHHTTCSEEEES
T ss_pred HHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCHHHHHHCCCCEEECC
T ss_conf 99999997799985458850487788577999999999999999981899768889754886600999998699989828
Q ss_pred HHHCCCCCCC
Q ss_conf 1323899999
Q gi|254780801|r 212 SGIFGERPCQ 221 (222)
Q Consensus 212 s~iFG~R~~~ 221 (222)
++|||.|||.
T Consensus 265 ~al~g~~~~~ 274 (282)
T 3cpg_A 265 TAIFGERAFI 274 (282)
T ss_dssp TTTC------
T ss_pred CCCCCCCCCC
T ss_conf 5101287767
No 4
>>1w8g_A YGGS, hypothetical UPF0001 protein YGGS; structural genomics, hypothetical protein, putative enzyme with PLP-binding domain; HET: PLP ICT; 2.0A {Escherichia coli} (A:)
Probab=99.92 E-value=1.7e-23 Score=179.02 Aligned_cols=219 Identities=32% Similarity=0.404 Sum_probs=196.3
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCC--CCCCEEEEC
Q ss_conf 899999999999999998198964418998718999999999997298100012100011110000012--587302302
Q gi|254780801|r 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE--WDVQLRFIG 80 (222)
Q Consensus 3 i~~nl~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~~~~~~G~~~fGENrvQE~~~K~~~l~~~--~~i~wHfIG 80 (222)
+.=+++.|+++|+.....++..+-.+.+.+.+|+++...|..+...|...|+...+.|+..-.....+. ....|++.+
T Consensus 4 ~v~d~~~i~~Ni~~~~~~~~~~~~~~~~~~~~K~~~~~~i~~l~~~g~~~~~vas~~E~~~~~~~~~~~~~~~~~~~~~~ 83 (234)
T 1w8g_A 4 IAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEGVDKIRHFQELGVTGLEWHFIG 83 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCGGGCEEEEECTTSCHHHHHHHHHTTCCEEEESSHHHHHHHHHHHHHTTCCSCEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 99999999999999999809997886999997888999999999879952100634778888898865304572332213
Q ss_pred CCCCCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHH
Q ss_conf 44320013201110000122222001344333333114303688970046656346570001222344310431100111
Q gi|254780801|r 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160 (222)
Q Consensus 81 ~LQsNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GL 160 (222)
..+...+..++...+.+.+|||.+.++.|++.+.+.+..+++.++++++...+|+|+.++++.++++.+.+.+++++.|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~ids~~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~r~G~~~~~~~~~~~~i~~~~~l~~~G~ 163 (234)
T 1w8g_A 84 PLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAELPPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGL 163 (234)
T ss_dssp CCCGGGHHHHHHHCSEEEEECSHHHHHHHHHHSCTTSCCEEEEEEECCSCTTCCCSBCGGGHHHHHHHHHTCTTEEEEEE
T ss_pred CCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEE
T ss_conf 43032211000023356665428899999876564067611788983046656645221107889987513785678787
Q ss_pred EECCCCCCCCH---HHHHHHHHHHHHC-----CCCEECCCCCHHHHHHHHHCCCEEEECHHHCCCCCCC
Q ss_conf 01154334520---5899999998875-----8947224777348999980898899711323899999
Q gi|254780801|r 161 MCIPPAMGNPK---PHFYLLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221 (222)
Q Consensus 161 Mti~p~~~d~~---~~F~~l~~l~~~~-----~~~~LSmGMS~D~~~Ai~~Gst~vRiGs~iFG~R~~~ 221 (222)
|+.++...++. ..|..+.++.+.+ .+..+|+|+|..+..+.++|.|+||+|+++||.+||.
T Consensus 164 ~~h~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~ggs~~~~~~~~~~~d~vr~G~~~~g~~~~~ 232 (234)
T 1w8g_A 164 MAIPAPESEYVRQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYS 232 (234)
T ss_dssp EECCCCCCCHHHHHHHHHHHHHHHHHHHHHSTTCCEEECCCGGGHHHHHHHTCSEEEESHHHHCC----
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEECCHHHHHHHHHHHCCCCEEEECCCCCCCCCCC
T ss_conf 323787303788775699999999998723799897767306469999986999698286414599999
No 5
>>3kw3_A Alanine racemase; niaid, ssgcid, seattle structural genomics center for infectious disease, iodide SOAK, LLP, CAT-scratch disease; HET: LLP; 2.04A {Bartonella henselae} (A:27-241)
Probab=99.92 E-value=2.3e-25 Score=191.51 Aligned_cols=209 Identities=14% Similarity=0.100 Sum_probs=182.9
Q ss_pred HHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHH-HHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCC
Q ss_conf 999999999999981989644189987189999999-9999729810001210001111000001258730230244320
Q gi|254780801|r 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKI-RVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85 (222)
Q Consensus 7 l~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I-~~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQsN 85 (222)
|+.++.+++......++....+.+.+++|+++...| +.++++|++.|+.++.+|+...+...+ +-.|+|+|+++++
T Consensus 1 L~~l~~N~~~~~~~~~~~~~~~~i~~~~K~~~~~~v~~~~~~~G~~~~~~s~~ee~~~~~~~~~---~~~i~~~~~~~~~ 77 (215)
T 3kw3_A 1 VRAIVANYRTLAQHVAPTECSAVVXANAYGLGAHKIAPALYQAGCRTFFVAQIEEALQLKAVLP---ENVMIALLNGFPH 77 (215)
T ss_dssp HHHHHHHHHHHHHHHTTSEECEECHHHHHTTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHHSC---SSCEEEETTCCCT
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHCC---CCCHHHHCCCCCH
T ss_conf 9999999999997579983999996652516499999999986969999938899999997278---5306776178977
Q ss_pred HHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEECCC
Q ss_conf 01320111000012222200134433333311430368897004665634657000122234431043110011101154
Q gi|254780801|r 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP 165 (222)
Q Consensus 86 Kvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMti~p 165 (222)
+.-..+-..+.+.+|||+..++.|++.+.+.++.++|+++||++ .+|+|+.++++.+++..+.+.+++++.|||+..+
T Consensus 78 ~~~~~~~~~~i~~~vds~~~l~~i~~~a~~~~~~~~v~l~vd~g--~~r~G~~~~e~~~~~~~l~~~~~l~l~Gl~~H~g 155 (215)
T 3kw3_A 78 KAEEFVAQSGIIPLLNSWSTIEDWQTLCQKKNKKFPAIIQVDTN--MSRLGLDKKELQKLIKNPTIFEKAEIKYILSHLA 155 (215)
T ss_dssp TCHHHHHHTTCEEEECSHHHHHHHHHHHHHHTCCCEEEEEBCSS--CCSSSBCHHHHHHHHHCCTHHHHSEEEEEECCCS
T ss_pred HHHHHHHHCCCCCEECCHHHHHHHHHHHHHCCCCEEEEEEECCC--CCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECC
T ss_conf 89999874145641065999999999999728970599996588--8756778156789998876414652688972012
Q ss_pred CCCC-CHHHH----HHHHHHHHHCCCCEECCCCCHHHHHHHHHCCCEEEECHHHCCCCCC
Q ss_conf 3345-20589----9999998875894722477734899998089889971132389999
Q gi|254780801|r 166 AMGN-PKPHF----YLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220 (222)
Q Consensus 166 ~~~d-~~~~F----~~l~~l~~~~~~~~LSmGMS~D~~~Ai~~Gst~vRiGs~iFG~R~~ 220 (222)
...+ .+..+ ..+..+.+.++....++++|+++..+.+.++|+||+|+++||.|||
T Consensus 156 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~vr~g~~lyG~~py 215 (215)
T 3kw3_A 156 NGEDASHSSNNKQLAAFKRVLAQLPTCKVSFANSGGIFLGSDFYFDLVRPGIALYGVDPH 215 (215)
T ss_dssp STTCTTCHHHHHHHHHHHHHHTTSCCCCEECCCHHHHTTCGGGTTTEECCSGGGGTCCTT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCHHCCCCCCCCEEEECCCCC
T ss_conf 334567378999999999998507754555767589876823215641041477568775
No 6
>>1rcq_A Catabolic alanine racemase DADX; alpha-beta barrel, beta-structure for C-terminal domain, internal/external aldimine forms, isomerase; HET: KCX PLP DLY; 1.45A {Pseudomonas aeruginosa} (A:11-221)
Probab=99.91 E-value=3e-24 Score=184.02 Aligned_cols=201 Identities=11% Similarity=0.043 Sum_probs=165.6
Q ss_pred HHHHHHHHHHHHCCCCHHHCEEEEECCCCC----HHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCC
Q ss_conf 999999999998198964418998718999----9999999972981000121000111100000125873023024432
Q gi|254780801|r 9 VFKQKIENSAILAKRPKDSVSLVAVSKMVD----SKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84 (222)
Q Consensus 9 ~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~----~e~I~~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQs 84 (222)
.++++++.... ...+++.+|+|+.| .+.|..+++.|...|+.++.+|++.....++. -..+|+++..+
T Consensus 2 ~l~~n~~~~~~-----~~~~~i~~~vKan~~~~~~~~i~~~~~~g~~~~~v~s~~E~~~~~~~~~~---~~i~~~~~~~~ 73 (211)
T 1rcq_A 2 ALRHNYRLARE-----ATGARALAVIKADAYGHGAVRCAEALAAEADGFAVACIEEGLELREAGIR---QPILLLEGFFE 73 (211)
T ss_dssp HHHHHHHHHHH-----HHCSEEEEECHHHHHTTCHHHHHHHHTTTCSEEEESSHHHHHHHHHTTCC---SCEEETTCCSS
T ss_pred HHHHHHHHHHC-----CCCCCEEEEEEECCCCCCHHHHHHHHHHCCCEEEEEEHHHHHHHHHHCCC---CCEECCCCCCC
T ss_conf 99999999970-----66994999996653538799999999956997999899999999970996---42011001355
Q ss_pred CHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEECC
Q ss_conf 00132011100001222220013443333331143036889700466563465700012223443104311001110115
Q gi|254780801|r 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP 164 (222)
Q Consensus 85 NKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMti~ 164 (222)
.+.-..+-...++++|||+..++.|++.+.+. ++.++|.+...++|+|+.++++.+++..+.++++|++.|||+..
T Consensus 74 ~~~~~~~~~~~i~~~vds~~~l~~l~~~a~~~----~~~i~i~i~~~~~rfG~~~~~~~~l~~~i~~~~~l~l~Gi~~H~ 149 (211)
T 1rcq_A 74 ASELELIVAHDFWCVVHCAWQLEAIERASLAR----PLNVWLXMDSGMHRVGFFPEDFRAAHERLRASGKVAKIVMMSHF 149 (211)
T ss_dssp GGGHHHHHHTTEEEEECSHHHHHHHHHCCCSS----CEEEEEEBCSSSCSSSBCHHHHHHHHHHHHHTTCEEEEEEECCC
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCC----CEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEE
T ss_conf 77889888631465658799999999746366----43699997267643356837888889998641454403456530
Q ss_pred CCCC-CCHHHHHHHHHHHHHC---CCCEECCCCCHHHHHHHHHCCCEEEECHHHCCCCCCC
Q ss_conf 4334-5205899999998875---8947224777348999980898899711323899999
Q gi|254780801|r 165 PAMG-NPKPHFYLLSEIAREC---KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221 (222)
Q Consensus 165 p~~~-d~~~~F~~l~~l~~~~---~~~~LSmGMS~D~~~Ai~~Gst~vRiGs~iFG~R~~~ 221 (222)
+... ++...+..+..+..++ ....+|+++|+++..+...|+|+||+|+++||.|||.
T Consensus 150 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~d~vr~G~~l~G~~~~~ 210 (211)
T 1rcq_A 150 SRADELDCPRTEEQLAAFSAASQGLEGEISLRNSPAVLGWPKVPSDWVRPGILLYGATPFE 210 (211)
T ss_dssp SSTTCTTCTHHHHHHHHHHHHHTTCCSCEECCCHHHHHHCTTSCCSEECCCGGGGTCCSSS
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCEECCCCCCCCCCCCC
T ss_conf 3355620367999999999987511332114683988548402486246672014567874
No 7
>>3llx_A Predicted amino acid aldolase or racemase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: LLP TRS; 1.50A {Idiomarina loihiensis} (A:22-239)
Probab=99.88 E-value=1.1e-22 Score=173.48 Aligned_cols=199 Identities=13% Similarity=0.068 Sum_probs=162.8
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHH-HHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECC
Q ss_conf 8999999999999999981989644189987189999999-999972981000121000111100000125873023024
Q gi|254780801|r 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKI-RVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGS 81 (222)
Q Consensus 3 i~~nl~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I-~~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~ 81 (222)
|.+|++.+++... ...+.+-+++|+++...| +.++++|++.|++++++|+........+...+.||++|+
T Consensus 3 i~~Ni~~~~~~~~---------~~~~~lk~~~k~~g~~~i~~~l~~~G~~~~~vas~~Ea~~~~~~g~~~~~~~~~~~~~ 73 (218)
T 3llx_A 3 LKSNINYLKQRVE---------SLGSHLRPHLXTLRTLEAAGYLLDSKSAPATVSTLAEAEAYAKAGYTDLLYAVGIAPA 73 (218)
T ss_dssp HHHHHHHHHHHHH---------HTTCCBCCBCTTTCBHHHHHHHCSSTTSCEEESSHHHHHHHHHTTCCEEEEEEECCGG
T ss_pred HHHHHHHHHHHHH---------HCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCCEEEECCCCCH
T ss_conf 9999999998641---------4498499996105789999999978999899647999999997799966992366807
Q ss_pred CCCCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHE
Q ss_conf 43200132011100001222220013443333331143036889700466563465700012223443104311001110
Q gi|254780801|r 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLM 161 (222)
Q Consensus 82 LQsNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLM 161 (222)
.|.++...+....+++++|||++.+..+++.+...++.++|+|+|+++.. +.|+.++. ++...+...+++++.|||
T Consensus 74 ~~~~~~~~~~~~~~~~~~v~s~~~l~~l~~~a~~~~~~~~v~i~vdtg~~--r~g~~~~~--~~~~~i~~~~~l~~~gi~ 149 (218)
T 3llx_A 74 KLKRVAALRQQGINLHILLDNITQAQAVVDYAAEFGQDFSVFIEIDSDDH--RGGIKPSD--SKLLTIAKTLGEHFTGLX 149 (218)
T ss_dssp GHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHTCCCEEEEEBCSSSS--SSCBCTTC--THHHHHHHHHGGGEEEEE
T ss_pred HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCCC--CCCCCHHH--HHHHHHHHHHCCCCCCCC
T ss_conf 78999987511775999968799999999999875980477640135567--68879258--999997543013332111
Q ss_pred ECCCCC---CC--C-----HHHHHHHHHHHHHC-----CCCEECCCCCHHHHHHHH-HCCCEEEECHHH
Q ss_conf 115433---45--2-----05899999998875-----894722477734899998-089889971132
Q gi|254780801|r 162 CIPPAM---GN--P-----KPHFYLLSEIAREC-----KLTKLSMGMTRDFELAIA-SGATSVRIGSGI 214 (222)
Q Consensus 162 ti~p~~---~d--~-----~~~F~~l~~l~~~~-----~~~~LSmGMS~D~~~Ai~-~Gst~vRiGs~i 214 (222)
+++... .+ + ...|..+.++.+.+ ....+|||+|.++..+.+ +|.|+||+|++|
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~s~g~S~~~~~~~~~~~~~~vR~G~aI 218 (218)
T 3llx_A 150 THAGGSYACNTEQGLKNFAKQECDAVRIARNNLETAGIHCAITSVGSTPTAHFGEDFSDISEVRAGVYT 218 (218)
T ss_dssp CCCGGGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEECCHHHHHHCSCCTTCSEECCCGGG
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHCCCCCEEEEEEEEE
T ss_conf 313110245988999999999999999864245524998668999386045454038985799978763
No 8
>>3co8_A Alanine racemase; protein structure initiative II, PSI-II, NYSGXRC, PLP, TIM barrel, structural genomics; HET: PLP; 1.70A {Oenococcus oeni psu-1} (A:16-235)
Probab=99.86 E-value=2.3e-22 Score=171.33 Aligned_cols=202 Identities=15% Similarity=0.114 Sum_probs=165.7
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHCEEEEECCCCC-----HHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEE
Q ss_conf 899999999999999998198964418998718999-----999999997298100012100011110000012587302
Q gi|254780801|r 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVD-----SKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLR 77 (222)
Q Consensus 3 i~~nl~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~-----~e~I~~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wH 77 (222)
|.+|++.+++.. +.++|.+|.|..+ ...++.++++|++.|+....+|+......-. +..|+
T Consensus 4 i~~N~~~l~~~~-----------~~~~i~~~vK~n~~g~~~~~i~~~~~~~G~~~~~vas~~E~~~~~~~g~---~~~~l 69 (220)
T 3co8_A 4 LAYNVQYTKQVS-----------GAKTLWLAVKSNAYGHGLLQVSKIARECGVDGLAVSVLDEGIAIRQAGI---DDFIL 69 (220)
T ss_dssp HHHHHHHHHHHH-----------CCSEEEEECHHHHHTTCHHHHHHHHGGGTCCEEEESSHHHHHHHHHTTC---CCCEE
T ss_pred HHHHHHHHHHHC-----------CCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHCC---CCCCH
T ss_conf 999999999657-----------9983999997314657889999999986979999835999999997368---88713
Q ss_pred EECCCCCCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCH
Q ss_conf 30244320013201110000122222001344333333114303688970046656346570001222344310431100
Q gi|254780801|r 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNV 157 (222)
Q Consensus 78 fIG~LQsNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~i 157 (222)
+.++..++++..++. ..+..+|||++.++.|.+.+.. ...++.++|+++...+|+|+.++++.+++..+.+++++++
T Consensus 70 ~~~~~~~~~~~~~~~-~~~~~~i~s~~~l~~l~~~~~~--~~~~~~i~i~~g~~~~~~G~~~~~~~~~~~~~~~~~~l~l 146 (220)
T 3co8_A 70 ILGPIDVKYAPIASK-YHFLTTVSSLDWLKSADKILGK--EKLSVNLAVDTGXNRIGVRSKKDLKDEIEFLQEHSDHFSY 146 (220)
T ss_dssp ECSCCCGGGHHHHHH-TTCEEEECCHHHHHHHHHHCTT--CCEEEEEEBCSSSCSSSBCSHHHHHHHHHHHHHCTTTEEE
T ss_pred HHHCCCHHHHHHHHH-HCCCCEECCHHHHHHHHHHHCC--CCHHHEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 330257255678887-4322300469999999975225--7601102330567865557256789999998653233220
Q ss_pred HHHEECCCCCCC-CHH---HHHHHHHHHHHC-----CCCEECCCCCHHHHHHHHHCCCEEEECHHHCCCCCCC
Q ss_conf 111011543345-205---899999998875-----8947224777348999980898899711323899999
Q gi|254780801|r 158 EGLMCIPPAMGN-PKP---HFYLLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221 (222)
Q Consensus 158 ~GLMti~p~~~d-~~~---~F~~l~~l~~~~-----~~~~LSmGMS~D~~~Ai~~Gst~vRiGs~iFG~R~~~ 221 (222)
.|||+.-+...+ ..+ .+..+.++.++. .+..+|+|+|.+|+.+.+++.|+||+|++|||.|||+
T Consensus 147 ~Gi~~H~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~vR~G~~lyG~~p~p 219 (220)
T 3co8_A 147 DGIFTHFASSDNPDDHYFQRQKNRWYELIDGLIXPRYVHVXNSGAAXYHSKELPGCNSIARVGTVVYGVEPSE 219 (220)
T ss_dssp EEEECCCC---------CHHHHHHHHHHHTTSCCCSEEECBCHHHHHHCGGGCTTSCSEEEESTTTTTCCTTT
T ss_pred CCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 2201011123544305788999999999987541021565322766347111565432016785300567874
No 9
>>1vfs_A Alanine racemase; TIM-barrel, greek-KEY motief, isomerase; HET: KCX DCS; 1.90A {Streptomyces lavendulae} (A:15-237)
Probab=99.86 E-value=1.7e-21 Score=165.54 Aligned_cols=193 Identities=12% Similarity=0.039 Sum_probs=161.3
Q ss_pred HHHCEEEEECCCCC-----HHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHCCCCHHCCC
Q ss_conf 64418998718999-----9999999972981000121000111100000125873023024432001320111000012
Q gi|254780801|r 25 KDSVSLVAVSKMVD-----SKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIET 99 (222)
Q Consensus 25 ~~~v~LiaVtK~~~-----~e~I~~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQsNKvk~i~~~~~~Ihs 99 (222)
.+.+++.+|+|..+ .+.++.+.++|++.|+...++|+......-.+ +..|+|.|+.+++....+. .+.+.+
T Consensus 14 ~~~~~i~~avKan~~~~~~~~i~~~~~~~G~~~~~vas~~E~~~~~~~g~~--~~~i~~~~~~~~~~~~~~~--~~~~~~ 89 (223)
T 1vfs_A 14 APRSALMAVVKSNAYGHGAVPCARAAQEAGAAWLGTATPEEALELRAAGIQ--GRIMCWLWTPGGPWREAIE--TDIDVS 89 (223)
T ss_dssp STTSEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEESSHHHHHHHHHTTCC--SEEEECCCCTTCCHHHHHH--TTCEEE
T ss_pred CCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCC--CCEEEEECCCHHHHHHHHH--HCCCCE
T ss_conf 899849999945246478999999999869899998369999999970899--9858981585056888654--122302
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCC-CCCCCCCCHHHHHHHHHHCCCCCCHHHHEECCCCCCC--C---HHH
Q ss_conf 222200134433333311430368897004665-6346570001222344310431100111011543345--2---058
Q gi|254780801|r 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI-QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN--P---KPH 173 (222)
Q Consensus 100 vds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~-~K~G~~p~el~~l~~~i~~~~~L~i~GLMti~p~~~d--~---~~~ 173 (222)
|||+..+++|++.+.+.+...+++|+||++... +++|+.++++..++..+.+.+++++.|+|+-.+...+ . +..
T Consensus 90 vds~~~l~~l~~~a~~~~~~~~v~i~i~~g~~r~g~~g~~~~~~~~~~~~~~~~~~l~l~Gi~~H~g~~~~~~~~~~~~~ 169 (223)
T 1vfs_A 90 VSGMWALDEVRAAARAAGRTARIQLXADTGLGRNGCQPADWAELVGAAVAAQAEGTVQVTGVWSHFACADEPGHPSIRLQ 169 (223)
T ss_dssp ECSHHHHHHHHHHHHHHTSCEEEEEEBCSSCCSSSBCHHHHHHHHHHHHHHHHTTSEEEEEEECCCSSTTSTTCHHHHHH
T ss_pred ECCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHH
T ss_conf 06599999999765513676328999527777567371378999887665421687646899860233443202778999
Q ss_pred HHHHH---HHHHH--CCCCEECCCCCHHHHHHHHHCCCEEEECHHHCCCCCCC
Q ss_conf 99999---99887--58947224777348999980898899711323899999
Q gi|254780801|r 174 FYLLS---EIARE--CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221 (222)
Q Consensus 174 F~~l~---~l~~~--~~~~~LSmGMS~D~~~Ai~~Gst~vRiGs~iFG~R~~~ 221 (222)
+..+. +...+ +.+..+|+|+|..+..+-++++||||+|+.+||.|||+
T Consensus 170 ~~~~~~~~~~~~~~g~~~~~i~~g~g~~~~~~~~~~~~~vr~G~~lyG~~~~~ 222 (223)
T 1vfs_A 170 LDAFRDMLAYAEKEGVDPEVRHIANSPATLTLPETHFDLVRTGLAVYGVSPSP 222 (223)
T ss_dssp HHHHHHHHHHHHHTTCCCSEEEEECHHHHHHCGGGCSSEEEECGGGGTCCSCG
T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHCCCCCCCCCCCCCCCCCC
T ss_conf 99999999999872788605663133100358210486025573306778862
No 10
>>3e5p_A Alanine racemase; ALR, PLP, SCP, isomerase, pyridoxal phosphate; HET: PLP EPE 2PE; 2.50A {Enterococcus faecalis} PDB: 3e6e_A* (A:15-235)
Probab=99.85 E-value=6.5e-21 Score=161.59 Aligned_cols=206 Identities=14% Similarity=0.106 Sum_probs=174.7
Q ss_pred HHHHHHHHHHHHCCCCHHHCEEEEECCCCC-----HHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCC
Q ss_conf 999999999998198964418998718999-----999999997298100012100011110000012587302302443
Q gi|254780801|r 9 VFKQKIENSAILAKRPKDSVSLVAVSKMVD-----SKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQ 83 (222)
Q Consensus 9 ~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~-----~e~I~~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQ 83 (222)
.|+++|+...+.. +..+++..++|+.+ .+-++.+.++|...|+.+..+|+.......+ +..|++.|+.+
T Consensus 3 ~i~~Ni~~l~~~~---~~~~~i~~a~Kan~~~~~~~~i~~~~~~~G~~~~~vs~~~e~~~~~~~~~---~~~i~~~~~~~ 76 (221)
T 3e5p_A 3 AITENVQKECQRL---PEGTALFAVVKANGYGHGAVESAKAAKKGGATGFCVALLDEAIELREAGV---QDPILILSVVD 76 (221)
T ss_dssp HHHHHHHHHHHSS---CSSSEEEEECHHHHHTTCHHHHHHHHHHTTCCCEEESSHHHHHHHHTTTC---CSCEEEEEECC
T ss_pred HHHHHHHHHHHHC---CCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHCC---CCCCCCCCCCC
T ss_conf 9999999999747---99997999995424648889999999986979999829999999998289---76532026767
Q ss_pred CCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEEC
Q ss_conf 20013201110000122222001344333333114303688970046656346570001222344310431100111011
Q gi|254780801|r 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI 163 (222)
Q Consensus 84 sNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMti 163 (222)
+.++..++.+...+..+|+..+.+.++..+.+.++.++|+++||++ ...|+|+.++++.++++.+.+.++|+++|||+.
T Consensus 77 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~v~l~i~~g-~~r~gg~~~~e~~~~~~~i~~~~~l~l~Gi~~H 155 (221)
T 3e5p_A 77 LAYVPLLIQYDLSVTVATQEWLEAALQQLTPESNTPLRVHLKVDTG-MGRIGFLTPEETKQAVRFVQSHKEFLWEGIFTH 155 (221)
T ss_dssp GGGHHHHHHHTCEEEECCHHHHHHHHHHHCSCCSCCBCEEEEBCSS-SCSSSBCSSHHHHHHHHHHHHSTTBCCCEEECC
T ss_pred HHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHCCCCCEEEEEEEECC-CCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCCH
T ss_conf 7888887751555254107777766666542357622479987445-631587827888999998876213430101011
Q ss_pred CCCCC-CCHHHHHHHHHHHHHC------CCCEECCCCCHHHHHHHHHCCCEEEECHHHCCCCCCC
Q ss_conf 54334-5205899999998875------8947224777348999980898899711323899999
Q gi|254780801|r 164 PPAMG-NPKPHFYLLSEIAREC------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221 (222)
Q Consensus 164 ~p~~~-d~~~~F~~l~~l~~~~------~~~~LSmGMS~D~~~Ai~~Gst~vRiGs~iFG~R~~~ 221 (222)
.+... ++.+.+..+.+..+.+ ....+++++|+..-.+-..+.|++|.|+++||.|||.
T Consensus 156 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Ggg~~~~~~~~d~~r~G~~l~g~~~~~ 220 (221)
T 3e5p_A 156 FSTADEIDTSYFEKQAGRFKAVLAVLEELPRYVHVSNSATALWHPDVPGNMIRYGVAMYGLNPSG 220 (221)
T ss_dssp CSCTTSSCCHHHHHHHHHHHTTSSSCSCCCSEEECBCHHHHHHCTTSSCSEEEECGGGGTCCTTT
T ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHCCCCCCCCCCCCCCCEEEECCCCC
T ss_conf 11134235578999999999999862145303452140433058400276046653000037884
No 11
>>1xfc_A Alanine racemase; alpha-beta barrel, beta-structure for C-terminal domain, internal aldimine form, isomerase; HET: PLP; 1.90A {Mycobacterium tuberculosis} (A:19-240)
Probab=99.84 E-value=2.7e-20 Score=157.40 Aligned_cols=204 Identities=15% Similarity=0.127 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHCEEEEECCCCC-----HHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEE
Q ss_conf 899999999999999998198964418998718999-----999999997298100012100011110000012587302
Q gi|254780801|r 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVD-----SKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLR 77 (222)
Q Consensus 3 i~~nl~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~-----~e~I~~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wH 77 (222)
|++|++.+++.+ +.++|.+|.|..+ .+.++.+.++|++.|......|+..-...... ...|+
T Consensus 3 i~~N~~~~~~~~-----------~~~~i~~~vK~n~~~~~~~~i~~~~~~~Gv~~~~v~s~~E~~~~~~~g~~--~~~l~ 69 (222)
T 1xfc_A 3 IEHNVRVLREHA-----------GHAQLMAVVKADGYGHGATRVAQTALGAGAAELGVATVDEALALRADGIT--APVLA 69 (222)
T ss_dssp HHHHHHHHHHHH-----------TTSEEEEECHHHHHTTCHHHHHHHHHHTTCCEEEESCHHHHHHHHHTTCC--SCEEE
T ss_pred HHHHHHHHHHHC-----------CCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCC--CCEEE
T ss_conf 999999999768-----------99839999925036378899999999779699999279999999970998--86699
Q ss_pred EECCCCCCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCC-CCHHHHHHHHHHCCCCCC
Q ss_conf 3024432001320111000012222200134433333311430368897004665634657-000122234431043110
Q gi|254780801|r 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM-PNQTKDFVILCRQKYQLN 156 (222)
Q Consensus 78 fIG~LQsNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~-p~el~~l~~~i~~~~~L~ 156 (222)
|.|..++.....+. ...+.+|||+..++.|.+.+.+.++..+|+++|+++...+++|+. ++++..++..+...++|+
T Consensus 70 ~~~~~~~~~~~~~~--~~~~i~vds~~~l~~l~~~a~~~~~~~~v~l~i~~g~~r~g~g~~~~~~~~~~~~~~~~~~~l~ 147 (222)
T 1xfc_A 70 WLHPPGIDFGPALL--ADVQVAVSSLRQLDELLHAVRRTGRTATVTVKVDTGLNRNGVGPAQFPAMLTALRQAMAEDAVR 147 (222)
T ss_dssp CCCCTTCCCHHHHH--TTCEEEECSHHHHHHHHHHHHHHCCCEEEEEEBCSSCCSSSBCTTTHHHHHHHHHHHHHTTSEE
T ss_pred EECCCHHHHHHHHH--HCCCEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 84662778999875--1320133458999998988875313421478974677767868067788888888776421555
Q ss_pred HHHHEECCCCCCC--C---HHHHHHHHHHHHHC-----CCCEECCCCCHHHHHHHHHCCCEEEECHHHCCCCCCC
Q ss_conf 0111011543345--2---05899999998875-----8947224777348999980898899711323899999
Q gi|254780801|r 157 VEGLMCIPPAMGN--P---KPHFYLLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221 (222)
Q Consensus 157 i~GLMti~p~~~d--~---~~~F~~l~~l~~~~-----~~~~LSmGMS~D~~~Ai~~Gst~vRiGs~iFG~R~~~ 221 (222)
+.|||+..+.... . +..|..+..+.+.+ .+..+|+|+|..+..+-+.+.|+||+|+++||.||++
T Consensus 148 l~Gi~~H~gs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~ggs~~~~~~~~~~~~~vr~G~~l~G~~p~p 222 (222)
T 1xfc_A 148 LRGLMSHMVYADKPDDSINDVQAQRFTAFLAQAREQGVRFEVAHLSNSSATMARPDLTFDLVRPGIAVYGLSPVP 222 (222)
T ss_dssp EEEEECCC-----CCSHHHHHHHHHHHHHHHHHHHTTCCCSEEECBCHHHHHHCGGGCCSEECCSGGGGTCCSSG
T ss_pred CEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHCCCCCCCCEEECCCCCC
T ss_conf 101243354033243055699999999999876640787125555303555418511034235673032256775
No 12
>>2rjg_A Alanine racemase; alpha/beta barrel, cell shape, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis, pyridoxal phosphate; HET: KCX PLP; 2.40A {Escherichia coli} PDB: 2rjh_A* 3b8v_A* 3b8u_A* 3b8t_A* 3b8w_A* (A:31-242)
Probab=99.82 E-value=2.2e-20 Score=158.06 Aligned_cols=201 Identities=16% Similarity=0.121 Sum_probs=164.5
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHHHH---HHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEE
Q ss_conf 8999999999999999981989644189987189999999999---9729810001210001111000001258730230
Q gi|254780801|r 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVA---LSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFI 79 (222)
Q Consensus 3 i~~nl~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~~~---~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfI 79 (222)
|++|++.+++.. +.+++.+|.|+.+...+... +.+|++.|+...++|+.......+ +..++|+
T Consensus 3 i~~Ni~~l~~~~-----------~~~~i~~~vKan~~~~~~~~~~~~~~G~~~~~va~~~Ea~~l~~~~~---~~~i~~~ 68 (212)
T 2rjg_A 3 LRHNLQRLRELA-----------PASKMVAVVKANAYGHGLLETARTLPDADAFGVARLEEALRLRAGGI---TKPVLLL 68 (212)
T ss_dssp HHHHHHHHHHHS-----------TTSEEEEECHHHHHTTCHHHHHHHCTTCSEEEESSHHHHHHHHHTTC---CSCEEET
T ss_pred HHHHHHHHHHHC-----------CCCEEEEEEEECCCCCCHHHHHHHHHHCCEEEEEEHHHHHHHHHHCC---CCCCCCC
T ss_conf 999999999658-----------99869999955315587899999997499799969899999998489---8764210
Q ss_pred CCCCCCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHH-CCCCCCHH
Q ss_conf 24432001320111000012222200134433333311430368897004665634657000122234431-04311001
Q gi|254780801|r 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVE 158 (222)
Q Consensus 80 G~LQsNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~-~~~~L~i~ 158 (222)
|++++++....+...+.+.+|||+..++.|++.+.+.+ ..+.|.|+++ .+|+|+.+++..+++..+. ..++|++.
T Consensus 69 ~~~~~~~~~~~a~~~~i~~~vds~~~l~~l~~~~~~~~--~~v~i~i~~g--~~R~G~~~~~~~~~~~~~~~~~~~l~l~ 144 (212)
T 2rjg_A 69 EGFFDARDLPTISAQHFHTAVHNEEQLAALEEASLDEP--VTVWMXLDTG--MHRLGVRPEQAEAFYHRLTQCKNVRQPV 144 (212)
T ss_dssp TCCSCGGGHHHHHHTTEEEEECSHHHHHHHHHCCCSSC--BCEEEEBCSS--CCSSSBCHHHHHHHHHHHTTCSSBCSSC
T ss_pred CCCCCHHHHHHHHHHCCCCEECCHHHHHHHHHHHCCCC--CEEEEEECCC--CCCCCCCCCHHHHHHHHHHHCCCCCCEE
T ss_conf 13676677999987237404274999999988633897--1489998035--6877867315678999986311232026
Q ss_pred HHEECCCCCCC-CHHHHHHHHHHHHHC---CCCEECCCCCHHHHHHHHHCCCEEEECHHHCCCCCCC
Q ss_conf 11011543345-205899999998875---8947224777348999980898899711323899999
Q gi|254780801|r 159 GLMCIPPAMGN-PKPHFYLLSEIAREC---KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221 (222)
Q Consensus 159 GLMti~p~~~d-~~~~F~~l~~l~~~~---~~~~LSmGMS~D~~~Ai~~Gst~vRiGs~iFG~R~~~ 221 (222)
|+|+......+ ..+.|....++..++ ....+++++|+.+-.+...+.|+||+|++|||.+||+
T Consensus 145 Gi~~H~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~d~vR~G~~~yG~~~~~ 211 (212)
T 2rjg_A 145 NIVSHFARADEPKCGATEKQLAIFNTFCEGKPGQRSIAASGGILLWPQSHFDWVRPGIILYGVSPLE 211 (212)
T ss_dssp EEECCCSSTTCTTSTHHHHHHHHHHHHHTTCCSCEECCCHHHHHHCGGGCSSEECCCGGGGTCCSSS
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 7860315565436589999999999998615332323465332167612366435773125777642
No 13
>>1bd0_A Alanine racemase; isomerase, pyridoxal phosphate, alanine phosphonate; HET: IN5; 1.60A {Bacillus stearothermophilus} (A:15-232)
Probab=99.80 E-value=3.5e-19 Score=149.94 Aligned_cols=202 Identities=17% Similarity=0.135 Sum_probs=160.6
Q ss_pred HHHHHHHHHHHCCCCHHHCEEEEECCCCC-----HHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCC
Q ss_conf 99999999998198964418998718999-----9999999972981000121000111100000125873023024432
Q gi|254780801|r 10 FKQKIENSAILAKRPKDSVSLVAVSKMVD-----SKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84 (222)
Q Consensus 10 i~~~I~~a~~~~gR~~~~v~LiaVtK~~~-----~e~I~~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQs 84 (222)
|+++|+...... +..++|..+.|+.+ .+.++.++++|+..|+.+.++|+........ +..|++.++..+
T Consensus 3 i~~ni~~l~~~~---~~~~~i~~~vKan~~~~~~~~i~~~~~~~Gv~g~~vas~~E~~~~~~~g~---~~~~i~~~~~~~ 76 (218)
T 1bd0_A 3 IYDNVENLRRLL---PDDTHIMAVVKANAYGHGDVQVARTALEAGASRLAVAFLDEALALREKGI---EAPILVLGASRP 76 (218)
T ss_dssp HHHHHHHHHHHS---CTTCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEESSHHHHHHHHHTTC---CSCEEECSCCCG
T ss_pred HHHHHHHHHHHC---CCCCEEEEEEEEECCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCC---CCEEEEECCCCH
T ss_conf 999999999738---99897999980403658889999999986979999777899999997189---972999448777
Q ss_pred CHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCH-HHHHHHHHHCCCCCCHHHHEEC
Q ss_conf 001320111000012222200134433333311430368897004665634657000-1222344310431100111011
Q gi|254780801|r 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ-TKDFVILCRQKYQLNVEGLMCI 163 (222)
Q Consensus 85 NKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~e-l~~l~~~i~~~~~L~i~GLMti 163 (222)
++...+.. .++..+||++..++.+++.+ ..++.++|+|++|++ .+|+|+..++ +..++..+...++|++.|||+.
T Consensus 77 ~~~~~~~~-~~~~i~i~s~~~~~~l~~~~-~~~~~~~v~l~i~~g--~~r~G~~~~~~~~~~~~~i~~~~~l~l~Glh~H 152 (218)
T 1bd0_A 77 ADAALAAQ-QRIALTVFRSDWLEEASALY-SGPFPIHFHLKMDTG--MGRLGVKDEEETKRIVALIERHPHFVLEGLYTH 152 (218)
T ss_dssp GGHHHHHH-TTEEEEECCHHHHHHHHHHC-CCSSCEEEEEEBCSS--SCSSSBCSHHHHHHHHHHHHHSTTEEEEEEECC
T ss_pred HHHHHHHH-CCCCCEECHHHHHHHHHHHH-HCCCCEEEEEEEECC--CCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 88998641-35540430899999886554-036643799997136--776788867878899999975876413466431
Q ss_pred CCCCC-CC----HHHHHHHHHHHHHCC--CCEECCCCCHHHHHHHHHCCCEEEECHHHCCCCCCC
Q ss_conf 54334-52----058999999988758--947224777348999980898899711323899999
Q gi|254780801|r 164 PPAMG-NP----KPHFYLLSEIARECK--LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221 (222)
Q Consensus 164 ~p~~~-d~----~~~F~~l~~l~~~~~--~~~LSmGMS~D~~~Ai~~Gst~vRiGs~iFG~R~~~ 221 (222)
.+... +. +..+..+..+.+.+. -..+++.+|+.-.-+...+.|++|+|+++||.|||+
T Consensus 153 ~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Ggg~~~~~~~~~~~r~G~~~yG~~~~p 217 (218)
T 1bd0_A 153 FATADEVNTDYFSYQYTRFLHMLEWLPSRPPLVHCANSAASLRFPDRTFNMVRFGIAMYGLAPSP 217 (218)
T ss_dssp CSSTTSSCCHHHHHHHHHHHHHHTTCSSCCSEEECCCHHHHHHCTTSCTTEEEECGGGGTCCSCG
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHCCCCCCCCCCCCCEEECCCCCC
T ss_conf 35654336689999999999998742466411575140444308523475124561333357885
No 14
>>2dy3_A Alanine racemase; alpha/beta barrel, isomerase; HET: PLP; 2.10A {Corynebacterium glutamicum} (A:10-225)
Probab=99.79 E-value=7.2e-19 Score=147.85 Aligned_cols=201 Identities=15% Similarity=0.106 Sum_probs=154.7
Q ss_pred HHHHHHHHHHHHHHCCCCHHHCEEEEECCCCC-----HHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECC
Q ss_conf 99999999999998198964418998718999-----9999999972981000121000111100000125873023024
Q gi|254780801|r 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVD-----SKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGS 81 (222)
Q Consensus 7 l~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~-----~e~I~~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~ 81 (222)
|+.|+++++...... +.+++.+|+|..+ ..-.+.+.++|++.|+....+|+......... ...+.|.|+
T Consensus 1 L~~i~~n~~~~~~~~----~~~~i~~~vKan~~~~~~~~i~~~~~~~G~~~~~vas~~E~~~~~~~g~~--~~~i~~~~~ 74 (216)
T 2dy3_A 1 LDAIAHNTRVLKQMA----GPAKLMAVVKANAYNHGVEKVAPVIAAHGADAFGVATLAEAMQLRDIGIS--QEVLCWIWT 74 (216)
T ss_dssp HHHHHHHHHHHHHHH----TTSEEEEECHHHHHHTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHTTCC--SEEEECCCC
T ss_pred HHHHHHHHHHHHHHC----CCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCC--CCEEEECCC
T ss_conf 999999999998458----99849999955546478999999999869499998619999999971899--966752478
Q ss_pred CCCCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHE
Q ss_conf 43200132011100001222220013443333331143036889700466563465700012223443104311001110
Q gi|254780801|r 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLM 161 (222)
Q Consensus 82 LQsNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLM 161 (222)
.++..- +........+|||++.++.|.+... +...+++.++++ .+|+|+.++++.+++..+...|++++.|||
T Consensus 75 ~~~~~~--~~~~~~~~~~ids~~~l~~l~~~~~---~~~~~~~~~~~~--~~r~G~~~~~~~~~~~~~~~~~~l~l~Gi~ 147 (216)
T 2dy3_A 75 PEQDFR--AAIDRNIDLAVISPAHAKALIETDA---EHIRVSIKIDSG--LHRSGVDEQEWEGVFSALAAAPHIEVTGMF 147 (216)
T ss_dssp TTSCHH--HHHTTTCEEEECSHHHHHHHHTSCC---SCEEEEEEBCCS--SCSSSBCHHHHHHHHHHHHTCTTEEEEEEE
T ss_pred CHHHHH--HHHHHCEEEEEEEHHHHHHHHHHCC---CCEEEEEEEECC--CCCCCCCHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 647799--9875121135640676544443024---522799999556--323588889999998876413541245433
Q ss_pred ECCCCCCC-----CHHHHHHHHHHHHH---C--CCCEECCCCCHHHHHHHHHCCCEEEECHHHCCCCCC
Q ss_conf 11543345-----20589999999887---5--894722477734899998089889971132389999
Q gi|254780801|r 162 CIPPAMGN-----PKPHFYLLSEIARE---C--KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220 (222)
Q Consensus 162 ti~p~~~d-----~~~~F~~l~~l~~~---~--~~~~LSmGMS~D~~~Ai~~Gst~vRiGs~iFG~R~~ 220 (222)
+..+.... .+..+..++.+.+. + ....+|+|+|..++.+.++++|+||+|+++||.||-
T Consensus 148 ~H~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ig~~~~~~~~~~~~~~~vr~G~~l~G~~p~ 216 (216)
T 2dy3_A 148 THLACADEPENPETDRQIIAFRRALALARKHGLECPVNHVCNSPAFLTRSDLHMEMVRPGLAFYGLEPV 216 (216)
T ss_dssp CCCC--------CHHHHHHHHHHHHHHHHHTTCCCCSCBCCCHHHHHHCGGGCTTEECCCGGGGTCCSS
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHCCCCCCCCEECCCCCEECCCCC
T ss_conf 331024411203579999999999999876278651444302023312631136631257434325774
No 15
>>3hur_A Alanine racemase; structural genomics, isomerase, pyridoxal phosphate, PSI-2, protein structure initiative; 2.50A {Oenococcus oeni psu-1} (A:16-238,A:376-395)
Probab=99.66 E-value=9.2e-17 Score=133.65 Aligned_cols=198 Identities=12% Similarity=0.057 Sum_probs=151.8
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCH----HHHH--HHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCE
Q ss_conf 8999999999999999981989644189987189999----9999--999729810001210001111000001258730
Q gi|254780801|r 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDS----KKIR--VALSCGQVIFAENKLQEAKKKWIPLRKEWDVQL 76 (222)
Q Consensus 3 i~~nl~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~----e~I~--~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~w 76 (222)
|++|++.+++.. +.+++.+|.|..+. ..+. .+.++|...|+...++|+....... .+..+
T Consensus 4 i~~Ni~~l~~~~-----------~~~~i~~avKan~~~~~~~~i~~~~l~~~G~~~~~v~s~~E~~~~~~~g---~~~~~ 69 (243)
T 3hur_A 4 AAHNLQEIREWT-----------KAKKVYAVLKADGYGLGAIPLAKAFQETASADALIVSNLDEALELRQAD---LTLPI 69 (243)
T ss_dssp HHHHHHHHHHHH-----------TCSEEEEECCHHHHHTCHHHHHHHHHHTTCCSEEEESCHHHHHHHHHTT---CCSCE
T ss_pred HHHHHHHHHHHC-----------CCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCC---CCCEE
T ss_conf 999999999568-----------9985999995622658889999999987899999992899999999669---99839
Q ss_pred EEECCCCCCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCC-CCHHHHHHHHHHCCCCC
Q ss_conf 23024432001320111000012222200134433333311430368897004665634657-00012223443104311
Q gi|254780801|r 77 RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM-PNQTKDFVILCRQKYQL 155 (222)
Q Consensus 77 HfIG~LQsNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~-p~el~~l~~~i~~~~~L 155 (222)
.+.+...+..++.++.. ....++||+..++.|++.+ +..+++|+|+++ .++.|+. ++++.++++.+.++++|
T Consensus 70 i~~~~~~~~~~~~~~~~-~i~~~v~s~~~l~~l~~~~----~~~~v~i~id~g--~~R~G~~~~e~~~~~~~~i~~~~~l 142 (243)
T 3hur_A 70 WVLGAWDYSDLKLFIDH-DIVITIPSLAWLQNLPDFE----GTLKVSLAIDTG--MTRIGFDKADEISAAKKIIDKNPQL 142 (243)
T ss_dssp EESSCCCGGGHHHHHHT-TEEEEECCHHHHHTCCCCS----SCEEEEEEBCCS--SCSSSBCCHHHHHHHHHHHHHCTTE
T ss_pred EEECCCCHHHHHHHHHH-HHCCCCCHHHHHHHHHHCC----CCCEEEEEEECC--CCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 98378997999999874-4323322688754555316----873599998078--8878888588899999999857886
Q ss_pred CHHHHEECCCCCCCC-----HHHHHH---HHHHHHHCC-----CCEECCCCCHHHHHHHHHCCCEEEECHHHCCCCCCC
Q ss_conf 001110115433452-----058999---999988758-----947224777348999980898899711323899999
Q gi|254780801|r 156 NVEGLMCIPPAMGNP-----KPHFYL---LSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221 (222)
Q Consensus 156 ~i~GLMti~p~~~d~-----~~~F~~---l~~l~~~~~-----~~~LSmGMS~D~~~Ai~~Gst~vRiGs~iFG~R~~~ 221 (222)
++.|||+..+...+. +..|.. +.+..++++ +..+|.|++..|+.+.+.+.|+||+|+++||++|+.
T Consensus 143 ~l~Gi~~H~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~vr~G~~lyg~~~~~ 221 (243)
T 3hur_A 143 DLFSVYTHFATADEAGEKSKAYFEEQLRRWQELTINQGFDPSLFSMANSATCIWHHDDPRISFAAIRPGQLISGVNVSN 221 (243)
T ss_dssp EEEEEECCCTTTTSCSHHHHHHHHHHHHHHHHHHTTSCCCGGGEECCCHHHHHHTTTCTTSCCSEECCCGGGGTCCTTT
T ss_pred EEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHCCCCCHHCCCEEEECCCCCCCCCCC
T ss_conf 4899988526666345401689999999999999853887420442341335522577020363475022014766673
No 16
>>2p3e_A Diaminopimelate decarboxylase; southeast collaboratory for structural genomics, riken spring-8 center, riken genomic sciences center; 1.99A {Aquifex aeolicus VF5} (A:42-284)
Probab=99.47 E-value=1.4e-13 Score=112.31 Aligned_cols=202 Identities=11% Similarity=0.008 Sum_probs=154.1
Q ss_pred HHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCHH-H
Q ss_conf 999999999981989644189987189999999999972981000121000111100000125873023024432001-3
Q gi|254780801|r 10 FKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV-S 88 (222)
Q Consensus 10 i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQsNKv-k 88 (222)
|+++++...+.. +.+++.+|.|..+...+...+......|+-..++|+........+ +-.+.|.|+..+... +
T Consensus 3 i~~ni~~l~~~~----~~~~i~~~vKan~~~~~l~~l~~~~~g~~v~s~~E~~~~~~~g~~--~~~i~~~~~~~~~~~~~ 76 (243)
T 2p3e_A 3 IKERFEAYRKAF----PDALICYAVKANFNPHLVKLLGELGAGADIVSGGELYLAKKAGIP--PERIVYAGVGKTEKELT 76 (243)
T ss_dssp HHHHHHHHHHHS----TTSEEEEEGGGCCCHHHHHHHHHTTCEEEESSHHHHHHHHHTTCC--GGGEEECSSCCCHHHHH
T ss_pred HHHHHHHHHHHC----CCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCCHHHHHHHCCCC--HHHCCCCCCCCHHHHHH
T ss_conf 999999999868----998899996768999999999981998168635565555643896--12112455532036678
Q ss_pred HHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECC------------CCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 20111000012222200134433333311430368897004------------665634657000122234431043110
Q gi|254780801|r 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG------------YEIQKSGIMPNQTKDFVILCRQKYQLN 156 (222)
Q Consensus 89 ~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~------------~e~~K~G~~p~el~~l~~~i~~~~~L~ 156 (222)
.++.+-..+.+|||...++.|...+.+.+.+.+|++.||++ ++.+|+|+.++++.++++.+.++++++
T Consensus 77 ~a~~~~~~~~~ids~~~l~~l~~~~~~~~~~~~v~l~i~~~~~~~~~~~~~~~~~~~r~G~~~~e~~~~~~~l~~~~~~~ 156 (243)
T 2p3e_A 77 DAVDSEILMFNVESRQELDVLNEIAGKLGKKARIAIRVNPDVDPKTHPYIATGMQKSKFGVDIREAQKEYEYASKLENLE 156 (243)
T ss_dssp HHHHTTCSEEEECCHHHHHHHHHHHHHHTCCEEEEEEEEC----------------CCSCEEGGGHHHHHHHHHTCTTEE
T ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCE
T ss_conf 89974951034552567899987886239995799998626555667420245555533443034567778887617955
Q ss_pred HHHHEE-CCCCCCCCH---HHHHHHHHHHHHC-----CCCEECCCCCHHHHHHHHHCCCEEEECHHHCCCCCCC
Q ss_conf 011101-154334520---5899999998875-----8947224777348999980898899711323899999
Q gi|254780801|r 157 VEGLMC-IPPAMGNPK---PHFYLLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221 (222)
Q Consensus 157 i~GLMt-i~p~~~d~~---~~F~~l~~l~~~~-----~~~~LSmGMS~D~~~Ai~~Gst~vRiGs~iFG~R~~~ 221 (222)
+.|+|+ ++....+.. ..+..+..+.+.+ .+..+++|++-- +.+..+++|.|..+||..+.+
T Consensus 157 ~~Glh~H~~s~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~i~~ggg~~----~~~~~~~~r~gi~~yg~~~~~ 226 (243)
T 2p3e_A 157 IVGIHCHIGSQILDISPYREAVEKVVSLYESLTQKGFDIKYLDIGGGLG----IKYKPEDKEPAPQDLADLLKD 226 (243)
T ss_dssp EEEEECCCCSSBSSCTHHHHHHHHHHHHHHHHHHTTCCCCEEECCCCBC----CCCSTTCCCCCHHHHHHHHTT
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCC----CCCCCCCCCCHHHHHHHHHHH
T ss_conf 9887614655446858877677887766566775197457732665433----454444431035555433223
No 17
>>3gwq_A D-serine deaminase; YP_556991.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 2.00A {Burkholderia xenovorans LB400} (A:72-295)
Probab=99.37 E-value=1.2e-12 Score=105.87 Aligned_cols=193 Identities=11% Similarity=0.057 Sum_probs=149.3
Q ss_pred CEEEEECCCCCHHHHH-HHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHCC--CCHHCCCCCCCC
Q ss_conf 1899871899999999-9997298100012100011110000012587302302443200132011--100001222220
Q gi|254780801|r 28 VSLVAVSKMVDSKKIR-VALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVS--LFDVIETVSREK 104 (222)
Q Consensus 28 v~LiaVtK~~~~e~I~-~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQsNKvk~i~~--~~~~Ihsvds~~ 104 (222)
|++..+.|+.+...+. .+.++|.+-|.....+|+............+-++..++-+.-....+.. ....+-++||++
T Consensus 1 v~i~~~vKan~~~~i~~~l~~~g~~g~~vas~~E~~~~~~~g~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~ids~~ 80 (224)
T 3gwq_A 1 VKLAPHGKTTXAPQLFRRQLETGAWGITLATAHQVRAAYHGGVSRVLXANQLVGRRNXXXVAELLSDPEFEFFCLVDSVE 80 (224)
T ss_dssp CEECCBCTTTCCHHHHHHHHHTTCCCEEESSHHHHHHHHHTTCCEEEECSCCCSHHHHHHHHHHTTCTTCEEEEEECCHH
T ss_pred CEEEEEECCCCCHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEECHH
T ss_conf 74999833236899999999779986998669999999973999879974778978999999863267804799980678
Q ss_pred HHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEECCCCCCCCH---HHHHHHHHH-
Q ss_conf 0134433333311430368897004665634657000122234431043110011101154334520---589999999-
Q gi|254780801|r 105 TASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLLSEI- 180 (222)
Q Consensus 105 ~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMti~p~~~d~~---~~F~~l~~l- 180 (222)
.+++|.+.+.+.+...++.+.+|++...++.++.++++..++..+...+++.+.|+++......++. ..+..+.++
T Consensus 81 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~Gi~~H~g~~~~~~~~~~~~~~~~~~~ 160 (224)
T 3gwq_A 81 GVEQLGEFFKSVNKQLQVLLELGVPGGRTGVRDAAQRNAVLEAITRYPDTLKLAGVELYEGVLKEEHEVREFLQSAVAVT 160 (224)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEECCTTSSSSBCSHHHHHHHHHHHHTSTTTEEEEEEEECGGGCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 99999999875464011111134333333333432399999999746677457799953143578266999999999999
Q ss_pred ---HHHC----CCCEECCCCCHHHHHHHHHC---------CCEEEECHHHCCCCCC
Q ss_conf ---8875----89472247773489999808---------9889971132389999
Q gi|254780801|r 181 ---AREC----KLTKLSMGMTRDFELAIASG---------ATSVRIGSGIFGERPC 220 (222)
Q Consensus 181 ---~~~~----~~~~LSmGMS~D~~~Ai~~G---------st~vRiGs~iFG~R~~ 220 (222)
.+++ ..-.++-|++.||..++..- .+++|.|+.+||..+|
T Consensus 161 ~~~~~~~~~~~~~i~iggG~~~~~~~~~~~~~~~~~~~~~~~~~epGr~l~~~~~~ 216 (224)
T 3gwq_A 161 RELVEQERFARAPAVLSGAGSAWYDVVAEEFVKASETGKVEVVLRPGCYLTHDVGI 216 (224)
T ss_dssp HHHHHHTCCSSSSEEEEECCSTTHHHHHHHTHHHHHSSSEEEEECCCCSSSSCSHH
T ss_pred HHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHCCCCCCCCEEEECCCEEEEECCHH
T ss_conf 99999752377763366114733122002443156786411696371589705413
No 18
>>2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio vulnificus CMCP6} PDB: 2plk_A* (A:63-295)
Probab=98.66 E-value=1.3e-08 Score=78.85 Aligned_cols=203 Identities=10% Similarity=0.084 Sum_probs=142.4
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCC
Q ss_conf 89999999999999999819896441899871899999999999729810001210001111000001258730230244
Q gi|254780801|r 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSL 82 (222)
Q Consensus 3 i~~nl~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~L 82 (222)
|.+|++.+++.+ +.+++.+|.|..+...+......+...|+-....|+..-....-. .-...|-|+.
T Consensus 3 l~~n~~~l~~~~-----------~~~~i~~~vKaN~~~~~l~~~~~~~~~~~v~s~~E~~~~~~~g~~--~~~i~~~~~~ 69 (233)
T 2plj_A 3 IRQQYRALKNAL-----------PNVTLHYALKPLPHPVVVRTLLAEGASFDLATTGEVELVASEGVP--ADLTIHTHPI 69 (233)
T ss_dssp HHHHHHHHHHHS-----------TTEEEEEESTTCCCHHHHHHHHHHTCEEEECSHHHHHHHHHTTCC--GGGEEECCSS
T ss_pred HHHHHHHHHHHC-----------CCCEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCC--CCEEEECCCC
T ss_conf 999999999868-----------999899995008889999999984998899899999999975959--0318988996
Q ss_pred CC-CHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEC--CCCCCCCCCCCCHHHHHHHHHHCCCCCCHHH
Q ss_conf 32-00132011100001222220013443333331143036889700--4665634657000122234431043110011
Q gi|254780801|r 83 QS-NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNT--GYEIQKSGIMPNQTKDFVILCRQKYQLNVEG 159 (222)
Q Consensus 83 Qs-NKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~--~~e~~K~G~~p~el~~l~~~i~~~~~L~i~G 159 (222)
-+ ..++.++.+--.+=.+||...++.+.+.+.+.+..+++.+.+++ +...++.|..++++.++.+... .+++++.|
T Consensus 70 ~~~~~l~~a~~~~~~~~~i~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~l~~~G 148 (233)
T 2plj_A 70 KRDADIRDALAYGCNVFVVDNLNELEKFKAYRDDVELLVRLSFRNSEAFADLSKKFGCSPEQALVIIETAK-EWNIRIKG 148 (233)
T ss_dssp CCHHHHHHHHHHTCCEEEECSHHHHHTTGGGTTTCEEEEEBCC---------CCCSCBCHHHHHHHHHHHH-HTTCEEEE
T ss_pred CCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-HHCCCCCC
T ss_conf 77035567766401221100056999999752003432110134543333212455567677788888777-51144335
Q ss_pred HEE-CCCCCCCCHH-------HHHHHHHHHHHC--CCCEECCCCC-----HHHHHHHHHCCCEEEECHHHCCCCC
Q ss_conf 101-1543345205-------899999998875--8947224777-----3489999808988997113238999
Q gi|254780801|r 160 LMC-IPPAMGNPKP-------HFYLLSEIAREC--KLTKLSMGMT-----RDFELAIASGATSVRIGSGIFGERP 219 (222)
Q Consensus 160 LMt-i~p~~~d~~~-------~F~~l~~l~~~~--~~~~LSmGMS-----~D~~~Ai~~Gst~vRiGs~iFG~R~ 219 (222)
+++ ++....+... .+..+..+.+.+ .+..++.|-+ -+++..++.-+++||.|-++||..|
T Consensus 149 ~~~h~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ggg~~~~~~~~~~~~~~~~~~vr~g~~~yg~~p 223 (233)
T 2plj_A 149 LSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGGFPVNYTQQVMPIDQFCAPINEALSLLPETV 223 (233)
T ss_dssp EECCCCTTCCCTHHHHHHHHHHHHHHHHHHHTTCCCCCEEECCCCCCCCSSSCCCCHHHHHHHHHHHHTTSCTTC
T ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 402011365572046789998877775433313776426414788664564456770245567778765304662
No 19
>>1twi_A Diaminopimelate decarboxylase; antibiotic resistance, lysine biosynthesis, structural genomics, NYSGXRC, PSI; HET: LYS PLP; 2.00A {Methanocaldococcus jannaschii} (A:38-295)
Probab=98.58 E-value=1.3e-06 Score=65.40 Aligned_cols=185 Identities=11% Similarity=0.029 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCC
Q ss_conf 89999999999999999819896441899871899999999999729810001210001111000001258730230244
Q gi|254780801|r 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSL 82 (222)
Q Consensus 3 i~~nl~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~L 82 (222)
+..+++.+..++.++..+.+ ..+++.-..|..|...|...+..-.-.|-=.-..|+..-...- .+.-++.|-|+.
T Consensus 3 ~~~~l~~~~~~~~~a~~~~~---~~~~~~ya~KaN~~~~il~~l~~~g~g~dv~S~~El~~al~~G--~~~~~ii~~g~~ 77 (258)
T 1twi_A 3 IKINYNRYIEAFKRWEEETG---KEFIVAYAYKANANLAITRLLAKLGCGADVVSGGELYIAKLSN--VPSKKIVFNGNC 77 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHS---CCEEEEEEGGGCCCHHHHHHHHHTTCEEEECSHHHHHHHHHTT--CCGGGEEECCSS
T ss_pred HHHHHHHHHHHHHHHHHHCC---CCEEEEEEECCCCCHHHHHHHHHHCCCEEEECHHHHHHHHHCC--CCCCCCCCCCCC
T ss_conf 99999999998877676238---8649999863489899999999839984997899999875312--574223455664
Q ss_pred CCCH-HHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECC------------CCCCCCCCCCCHHHHHHHHH
Q ss_conf 3200-1320111000012222200134433333311430368897004------------66563465700012223443
Q gi|254780801|r 83 QSNK-VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG------------YEIQKSGIMPNQTKDFVILC 149 (222)
Q Consensus 83 QsNK-vk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~------------~e~~K~G~~p~el~~l~~~i 149 (222)
.+++ ++.++..-..+=+|||+..++.|...+.+.+...+|++-||.+ +..+|+|++++++.++...+
T Consensus 78 k~~~~l~~a~~~g~~~i~vDs~~el~~i~~~~~~~~~~~~i~lrin~~~~~~~~~~~~~~~~~skFGi~~~~~~~~~~~~ 157 (258)
T 1twi_A 78 KTKEEIIMGIEANIRAFNVDSISELILINETAKELGETANVAFRINPNVNPKTHPKISTGLKKNKFGLDVESGIAMKAIK 157 (258)
T ss_dssp CCHHHHHHHHHTTCSEEEECSHHHHHHHHHHHHHHTCCEEEEEEEECCCCTTTCHHHHHHHHHSSCSEESTTSHHHHHHH
T ss_pred CHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHH
T ss_conf 30666667876786033222035666666678870998550122146767566632422542224565300136789999
Q ss_pred --HCCCCCCHHHHEE-CCCCCCCCHHH---HHHHHHHHHH-----CCCCEECCC
Q ss_conf --1043110011101-15433452058---9999999887-----589472247
Q gi|254780801|r 150 --RQKYQLNVEGLMC-IPPAMGNPKPH---FYLLSEIARE-----CKLTKLSMG 192 (222)
Q Consensus 150 --~~~~~L~i~GLMt-i~p~~~d~~~~---F~~l~~l~~~-----~~~~~LSmG 192 (222)
...+++++.|+-+ ++....++... ...+..+.+. ..+..+.+|
T Consensus 158 ~~~~~~~l~~~g~H~h~gs~~~~~~~~~~~~~~~~~l~~~~~~~g~~l~~idiG 211 (258)
T 1twi_A 158 MALEMEYVNVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEEGIEIEDVNLG 211 (258)
T ss_dssp HHHHCSSEEEEEEECCCCSSBCCSHHHHHHHHHHHHHHHHHHHTTCCCSEEECC
T ss_pred HHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 988741365556203330122443068999999999999999839980476403
No 20
>>2j66_A BTRK, decarboxylase; butirosin, AHBA biosynthesis, lyase; HET: PLP; 1.65A {Bacillus circulans} (A:40-274)
Probab=98.40 E-value=3e-06 Score=62.91 Aligned_cols=167 Identities=9% Similarity=0.007 Sum_probs=118.4
Q ss_pred HCEEEEECCCCCHHHHHHHH-HCCCCCCCCCCCHHHHHH-HHCCCCCCCCCEEEECCCCC-CHHHHHCCCCHHCCCCCCC
Q ss_conf 41899871899999999999-729810001210001111-00000125873023024432-0013201110000122222
Q gi|254780801|r 27 SVSLVAVSKMVDSKKIRVAL-SCGQVIFAENKLQEAKKK-WIPLRKEWDVQLRFIGSLQS-NKVSEIVSLFDVIETVSRE 103 (222)
Q Consensus 27 ~v~LiaVtK~~~~e~I~~~~-~~G~~~fGENrvQE~~~K-~~~l~~~~~i~wHfIG~LQs-NKvk~i~~~~~~Ihsvds~ 103 (222)
.+++.-..|.-|...|...+ +.|. .|==.-..|+..- ...++ .-++.|-|+.-+ .-++.++..-..+=++||.
T Consensus 2 ~~~~~yavKaN~~~~il~~l~~~g~-g~dv~S~~El~~al~~G~~---~~~ii~~g~~k~~~~l~~a~~~g~~~i~iDs~ 77 (235)
T 2j66_A 2 AIQFYLSLKANNNIHLAKLFRQWGL-GVEVASAGELALARHAGFS---AENIIFSGPGKKRSELEIAVQSGIYCIIAESV 77 (235)
T ss_dssp TEEEEEEGGGCCCHHHHHHHHHTTC-EEEESSHHHHHHHHHTTCC---GGGEEECCSCCCHHHHHHHHHHTCSEEEECSH
T ss_pred CCEEEEEECCCCCHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCC---HHHEEECCCCCCCCCCCCCCCCCEEEEECCCH
T ss_conf 9779999742799999999998199-4897599999999984998---78833033334432112211266226631312
Q ss_pred CHHHHHHHHHHHHCCCEEEEEEEECC-----------CCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEE-CCCCCCCCH
Q ss_conf 00134433333311430368897004-----------665634657000122234431043110011101-154334520
Q gi|254780801|r 104 KTASLLSLEMIKQSRFLPVYIQVNTG-----------YEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC-IPPAMGNPK 171 (222)
Q Consensus 104 ~~a~~L~~~~~~~~~~~~vliQVN~~-----------~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMt-i~p~~~d~~ 171 (222)
..++.|...+.+.++..++.|-||++ +.++|+|++++++.++++.+...+++++.||.+ +++...|+.
T Consensus 78 ~el~~i~~~a~~~~~~~~i~lRin~~~~~~~~~~~~~~~~skFGi~~~~~~~~~~~~~~~~~~~l~GlH~H~gs~~~~~~ 157 (235)
T 2j66_A 78 EELFYIEELAEKENKTARVAIRINPDKSFGSTAIKMGGVPRQFGMDESMLDAVMDAVRSLQFTKFIGIHVYTGTQNLNTD 157 (235)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEEEECSSCC--CCCSSSCCCCSSSEEGGGHHHHHHHHHHCTTEEEEEEECCCCSCBCCHH
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCH
T ss_conf 67788777887538752112222235442211122466764443210046889998765312443121000023642201
Q ss_pred ---HHHHHHHHH----HHH--CCCCEECC--CCCHHH
Q ss_conf ---589999999----887--58947224--777348
Q gi|254780801|r 172 ---PHFYLLSEI----ARE--CKLTKLSM--GMTRDF 197 (222)
Q Consensus 172 ---~~F~~l~~l----~~~--~~~~~LSm--GMS~D~ 197 (222)
..+..+.++ ..+ ..+..+++ |+..+|
T Consensus 158 ~~~~~~~~~~~~~~~l~~~~~~~~~~id~GGG~~~~y 194 (235)
T 2j66_A 158 SIIESMKYTVDLGRNIYERYGIVCECINLGGGFGVPY 194 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCSEEECCCCBCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCC
T ss_conf 2999999989998767763287643554136643454
No 21
>>2o0t_A Diaminopimelate decarboxylase; PLP binding enzyme, lysine biosynthesis, structural genomics, TB structural genomics consortium; HET: LLP; 2.33A {Mycobacterium tuberculosis H37RV} PDB: 1hkv_A* 1hkw_A (A:50-307)
Probab=98.32 E-value=4.2e-06 Score=61.93 Aligned_cols=176 Identities=13% Similarity=0.101 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHH-HCCCCCCCCCEEEECC
Q ss_conf 899999999999999998198964418998718999999999997298100012100011110-0000125873023024
Q gi|254780801|r 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW-IPLRKEWDVQLRFIGS 81 (222)
Q Consensus 3 i~~nl~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~~~~~~G~~~fGENrvQE~~~K~-~~l~~~~~i~wHfIG~ 81 (222)
|++|++.+++.. +..+++.-..|.-|...|...+..-...|-=--..|+..-. ..++ +-+.+|-|+
T Consensus 3 i~~~~~~l~~~~----------~~~~~i~yavKaN~~~~il~~l~~~g~g~dvaS~~El~~~l~~g~~---~~~ii~~~~ 69 (258)
T 2o0t_A 3 FRSRCRETAAAF----------GSGANVHYAAXAFLCSEVARWISEEGLCLDVCTGGELAVALHASFP---PERITLHGN 69 (258)
T ss_dssp HHHHHHHHHHHT----------SSGGGBEEEGGGCCCHHHHHHHHHHTCEEEECSHHHHHHHHHTTCC---GGGEEECCT
T ss_pred HHHHHHHHHHHC----------CCCCEEEEEECCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHCCCC---HHHEEECCC
T ss_conf 999999999855----------8998799987548989999999982997998799999999974998---677575256
Q ss_pred CCC-CHHHHHCCCC-HHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEC------------CCCCCCCCCCCCHHHHHHH
Q ss_conf 432-0013201110-0001222220013443333331143036889700------------4665634657000122234
Q gi|254780801|r 82 LQS-NKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLPVYIQVNT------------GYEIQKSGIMPNQTKDFVI 147 (222)
Q Consensus 82 LQs-NKvk~i~~~~-~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~------------~~e~~K~G~~p~el~~l~~ 147 (222)
.-+ .-++.++..- .+| +|||+...+.|.+.+.+.+.+.++.+-+|. ++..+|+|++++++.+++.
T Consensus 70 ~k~~~~l~~a~~~gv~~i-~vDs~~el~~i~~~~~~~~~~~~i~ir~~~~~~~~~~~~~~t~~~~skFGi~~~~~~~~~~ 148 (258)
T 2o0t_A 70 NKSVSELTAAVKAGVGHI-VVDSMTEIERLDAIAGEAGIVQDVLVRLTVGVEAHTHEFISTAHEDQKFGLSVASGAAMAA 148 (258)
T ss_dssp TCCHHHHHHHHHHTCSEE-EECSHHHHHHHHHHHHHHTCCEEEEEEEECSEEEEETEEEEESSCCSSSSEETTTTHHHHH
T ss_pred CCCHHHHHHHHHHHHCEE-ECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCEEEECCCCCCCCCCCHHHHHHHHH
T ss_conf 541367776553211134-1132779999986564128743320001234100121022036632245664567788999
Q ss_pred HHH--CCCCCCHHHHEE-CCCCCCCCHH-------HHHHHHHHHHH------CCCCEECCC
Q ss_conf 431--043110011101-1543345205-------89999999887------589472247
Q gi|254780801|r 148 LCR--QKYQLNVEGLMC-IPPAMGNPKP-------HFYLLSEIARE------CKLTKLSMG 192 (222)
Q Consensus 148 ~i~--~~~~L~i~GLMt-i~p~~~d~~~-------~F~~l~~l~~~------~~~~~LSmG 192 (222)
.++ ..+++++.||.+ ++....|+.. .+..+.++.+. ..+..+.+|
T Consensus 149 ~~~~~~~~~l~~~GlH~H~gS~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~idiG 209 (258)
T 2o0t_A 149 VRRVFATDHLRLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGEFGPEKTAQIATVDLG 209 (258)
T ss_dssp HHHHHHCSSEEEEEEECCCEEEECCSHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCEEECC
T ss_pred HHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 9987524574255554213545577089999999999999999875577608763220135
No 22
>>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A* (A:19-262)
Probab=98.12 E-value=5.9e-10 Score=87.86 Aligned_cols=204 Identities=12% Similarity=0.039 Sum_probs=150.4
Q ss_pred HHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCC-CHHH
Q ss_conf 999999999981989644189987189999999999972981000121000111100000125873023024432-0013
Q gi|254780801|r 10 FKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS-NKVS 88 (222)
Q Consensus 10 i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQs-NKvk 88 (222)
++++|+.-...++ ...+++...+|+.+...|..........|.-.-..|+..-...-- .+..+.|-|+..+ .-++
T Consensus 3 l~~ni~~l~~~~~--~~~v~~~~~~Kan~~~~i~~~~~~~g~g~~vas~~E~~~~~~~G~--~~~~i~~~~~~k~~~~i~ 78 (244)
T 2qgh_A 3 IKQAFLNYKEAFK--GRKSLICYALKANSNLSILSLLAHLESGADCVSIGEIQRALKAGI--KPYRIVFSGVGKSAFEIE 78 (244)
T ss_dssp --CHHHHHHHCCS--SEEEEEHHHHHHHHHHHHHTTCSSCEEEEEEGGGCCCHHHHHHHH--HTTCEEEESSHHHHHHHH
T ss_pred CCCHHHHHHHHCC--CEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHH--HCCCCEEEECHHHHHHHH
T ss_conf 5889999873399--889986999999999999857999975999982389999999999--819968982999999999
Q ss_pred HHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECC------------CCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 20111000012222200134433333311430368897004------------665634657000122234431043110
Q gi|254780801|r 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG------------YEIQKSGIMPNQTKDFVILCRQKYQLN 156 (222)
Q Consensus 89 ~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~------------~e~~K~G~~p~el~~l~~~i~~~~~L~ 156 (222)
.+++.-..+-+|||+..++.|...+.+.+.+.+++|.||++ .+.+|+|+.++++.+++..+...++++
T Consensus 79 ~a~~~~~~~~~vds~~~l~~l~~~~~~~~~~~~v~i~i~~~~~~~~~~~~~~g~~~~~fG~~~~~~~~~~~~~~~~~~i~ 158 (244)
T 2qgh_A 79 QALKLNILFLNVESFMELKTIETIAQSLGIKARISIRINPNIDAKTHPYISTGLKENKFGVGEKEALEMFLWAKKSAFLE 158 (244)
T ss_dssp HTTCCGGGEEECCTTCCHHHHHHHHHTTCSEEEECSHHHHHHHHHHHHHHTCCEEEEEEBCCCCCCCSCGGGBCCSTTSS
T ss_pred HCCCCCHHCCCCCCCCCHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 75999022324676431233442013201101223300678999987862985417999713101235674136866675
Q ss_pred HHHHEEC-CCCCCCCHH---HHHHHHHHHHHC-----CCCEECCCCCHHHHHHHHHCCCEEEECHHHCCC
Q ss_conf 0111011-543345205---899999998875-----894722477734899998089889971132389
Q gi|254780801|r 157 VEGLMCI-PPAMGNPKP---HFYLLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217 (222)
Q Consensus 157 i~GLMti-~p~~~d~~~---~F~~l~~l~~~~-----~~~~LSmGMS~D~~~Ai~~Gst~vRiGs~iFG~ 217 (222)
+.|+|+. +....++.. ....+..+.+.+ .+..+++|-+--....-..-.++.+++..|.+.
T Consensus 159 ~~G~h~h~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~i~~GGg~~~~~~~~~~~~~~~~~~~i~~~ 228 (244)
T 2qgh_A 159 PVSVHFHIGSQLLDLEPIIEASQKVAKIAKSLIALGIDLRFFDVGGGIGVSYENEETIKLYDYAQGILNA 228 (244)
T ss_dssp SSBCHHHHHHHHHHHHHCSSEEEEEEECCCBSSBCCHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCCCB
T ss_pred CCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf 5534788998765203221025664200101245675888877654334444454128864043025667
No 23
>>2nva_A Arginine decarboxylase, A207R protein; PLP, TIM barrel, eukaryotic ODC- like, lyase; HET: PL2; 1.80A {Paramecium bursaria chlorella virus 1} PDB: 2nv9_A* (A:25-257)
Probab=97.84 E-value=9.9e-05 Score=52.70 Aligned_cols=178 Identities=12% Similarity=0.058 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCC
Q ss_conf 89999999999999999819896441899871899999999999729810001210001111000001258730230244
Q gi|254780801|r 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSL 82 (222)
Q Consensus 3 i~~nl~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~L 82 (222)
|.+|++.+++.+ +.+++.+|.|..+...+..........|.=.-.-|+..-...--. +-+..|=|+.
T Consensus 3 l~~n~~~~~~~~-----------~~~~i~~avKAN~~~~~~~~l~~~g~g~~vas~~E~~~~~~~g~~--~~~ii~~~~~ 69 (233)
T 2nva_A 3 VEDLIDQWTILF-----------PRVTPHYAVKCNNDEVLLKTMCDKNVNFDCASSSEIKKVIQIGVS--PSRIIFAHTM 69 (233)
T ss_dssp HHHHHHHHHHHC-----------TTEEEEEEGGGCCCHHHHHHHHHTTCEEEECSHHHHHHHHHHTCC--GGGEEECCSC
T ss_pred HHHHHHHHHHHC-----------CCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCC--HHHEEECCCC
T ss_conf 999999999878-----------998689885328989999999984991998299999999985998--8994745676
Q ss_pred CC-CHHHHHCCC-CHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECC--CCCCCCCCCCCHHHHHHHHHHCCCCCCHH
Q ss_conf 32-001320111-000012222200134433333311430368897004--66563465700012223443104311001
Q gi|254780801|r 83 QS-NKVSEIVSL-FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG--YEIQKSGIMPNQTKDFVILCRQKYQLNVE 158 (222)
Q Consensus 83 Qs-NKvk~i~~~-~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~--~e~~K~G~~p~el~~l~~~i~~~~~L~i~ 158 (222)
.+ .-++.++++ +.++ .+||...++.+...+.+.+..+++.+.++++ +...++|..++++..+.+.. ..+++.+.
T Consensus 70 ~~~~~l~~a~~~g~~~~-~ids~~~l~~l~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~ 147 (233)
T 2nva_A 70 KTIDDLIFAKDQGVDIA-TFDSSFELDKIHTYHPNCKMILRIRCDDPNATVQLGNKFGANEDEIRHLLEYA-KQLDIEVI 147 (233)
T ss_dssp CCHHHHHHHHHHTCCEE-EECSHHHHHHHHHHCTTCEEEEEBCCCCTTCSBCCTTTSSBCGGGHHHHHHHH-HHTTCCEE
T ss_pred CCHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHH-HHCCCEEE
T ss_conf 67899999997401330-12246778777541333233113303455455566655687435679999988-75596367
Q ss_pred HHEECC-CCCCCCH---HHHHHHHHHHHH-----CCCCEECCCCCH
Q ss_conf 110115-4334520---589999999887-----589472247773
Q gi|254780801|r 159 GLMCIP-PAMGNPK---PHFYLLSEIARE-----CKLTKLSMGMTR 195 (222)
Q Consensus 159 GLMti~-p~~~d~~---~~F~~l~~l~~~-----~~~~~LSmGMS~ 195 (222)
|+|+.- ....++. .....+..+.++ ..+..+++|=|.
T Consensus 148 Gih~H~~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ggg~ 193 (233)
T 2nva_A 148 GISFHVGSGSRNPEAYYRAIKSSKEAFNEAISVGHKPYILDIGGGL 193 (233)
T ss_dssp EEECCCCBSBCCHHHHHHHHHHHHHHHHHHHHHTCCCCEEECCSCB
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCC
T ss_conf 8753546555444889999988888886654413455421224765
No 24
>>1f3t_A ODC, ornithine decarboxylase; beta-alpha-barrel, modified greek KEY beta-sheet, lyase; HET: PLP; 2.00A {Trypanosoma brucei} (A:46-279)
Probab=97.81 E-value=0.00018 Score=50.96 Aligned_cols=178 Identities=11% Similarity=0.007 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHC-CCCCCCCCEEEECC
Q ss_conf 89999999999999999819896441899871899999999999729810001210001111000-00125873023024
Q gi|254780801|r 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP-LRKEWDVQLRFIGS 81 (222)
Q Consensus 3 i~~nl~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~~~~~~G~~~fGENrvQE~~~K~~~-l~~~~~i~wHfIG~ 81 (222)
|++|++.+++.+ +.+++.+|.|.-+.-.+......-...|.=....|+..-... ++ .-...|-|+
T Consensus 3 i~~n~~~~~~~~-----------~~~~i~~avKan~~~~~l~~l~~~g~g~~v~s~~E~~~~~~~g~~---~~~ii~~~~ 68 (234)
T 1f3t_A 3 IVRKHETWKKCL-----------PRVTPFYAVKCNDDWRVLGTLAALGTGFDCASNTEIQRVRGIGVP---PEKIIYANP 68 (234)
T ss_dssp HHHHHHHHHHHC-----------TTEEEEEEGGGCCCHHHHHHHHHTTCEEEECSHHHHHHHHHTTCC---GGGEEECCS
T ss_pred HHHHHHHHHHHC-----------CCCEEEEEECCCCCHHHHHHHHHHCCEEEECCHHHHHHHHHCCCC---CCCEEEECC
T ss_conf 999999999868-----------998888885248989999999983995996299999999986989---042999479
Q ss_pred CCC-CHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECC--CCCCCCCCCCCHHHHHHHHHHCCCCCCHH
Q ss_conf 432-001320111000012222200134433333311430368897004--66563465700012223443104311001
Q gi|254780801|r 82 LQS-NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG--YEIQKSGIMPNQTKDFVILCRQKYQLNVE 158 (222)
Q Consensus 82 LQs-NKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~--~e~~K~G~~p~el~~l~~~i~~~~~L~i~ 158 (222)
.-+ .-++.++.+--.+-++||....+.|.+.+.+.+..+.+.+.++++ +...+.|..++++..+.+... .+++++.
T Consensus 69 ~~~~~~i~~a~~~~~~~~~~~s~~~~~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 147 (234)
T 1f3t_A 69 CKQISHIRYARDSGVDVMTFDCVDELEKVAKTHPKAKMVLRISTDDSLARCRLSVKFGAKVEDCRFILEQAK-KLNIDVT 147 (234)
T ss_dssp SCCHHHHHHHHHTTCCEEEECSHHHHHHHHHHCTTCEEEEEBCC----------CCSCBCHHHHHHHHHHHH-HTTCEEE
T ss_pred CCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHH-HCCCEEE
T ss_conf 899999999998799999967889999999867899727996146766768788888987999999999998-6698389
Q ss_pred HHEECCC-CCCCCHH---HHHHHHHHH---HHC--CCCEECCCCCH
Q ss_conf 1101154-3345205---899999998---875--89472247773
Q gi|254780801|r 159 GLMCIPP-AMGNPKP---HFYLLSEIA---REC--KLTKLSMGMTR 195 (222)
Q Consensus 159 GLMti~p-~~~d~~~---~F~~l~~l~---~~~--~~~~LSmGMS~ 195 (222)
|+++--. ...|+.. ....+..+. ++. .+..+++|=|.
T Consensus 148 gih~h~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iggg~ 193 (234)
T 1f3t_A 148 GVSFHVGSGSTDASTFAQAISDSRFVFDMGTELGFNMHILDIGGGF 193 (234)
T ss_dssp EEECCCCSCCSCTHHHHHHHHHHHHHHHHHHHTTCCCCEEECCCCC
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCC
T ss_conf 9863267677797999999999999999999819974068645776
No 25
>>1knw_A Diaminopimelate decarboxylase; pyridoxal-phosphate, decarboxylation, lysine, TIM-barrel, lyase; HET: PLP MES; 2.10A {Escherichia coli} (A:34-273)
Probab=96.98 E-value=0.0061 Score=40.65 Aligned_cols=166 Identities=13% Similarity=0.084 Sum_probs=107.2
Q ss_pred HHHCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHH-HCCCCC-CCCCEEEECCCCCC-HHHHHCCCCHHCCCCC
Q ss_conf 64418998718999999999997298100012100011110-000012-58730230244320-0132011100001222
Q gi|254780801|r 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW-IPLRKE-WDVQLRFIGSLQSN-KVSEIVSLFDVIETVS 101 (222)
Q Consensus 25 ~~~v~LiaVtK~~~~e~I~~~~~~G~~~fGENrvQE~~~K~-~~l~~~-~~i~wHfIG~LQsN-Kvk~i~~~~~~Ihsvd 101 (222)
+..+++.-..|.-|...|...+..-...|==.-..|+.--. ..++.. ..-+-.|-|+.-+. -++.++++-..| ++|
T Consensus 11 ~~~~~i~yAvKaN~~~~il~~l~~~g~g~dvaS~~El~~a~~~g~~~~~~~~~Ii~~gp~k~~~~l~~a~~~g~~i-~vD 89 (240)
T 1knw_A 11 KQFDVVRFAQKACSNIHILRLMREQGVKVDSVSLGEIERALAAGYNPQTHPDDIVFTADVIDQATLERVSELQIPV-NAG 89 (240)
T ss_dssp TTSSEEEEEGGGCCCHHHHHHHHHTTCEEEECSHHHHHHHHHTTCCTTTCTTSEEEEESCCCHHHHHHHHHHTCCE-EES
T ss_pred HCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCHH-HHH
T ss_conf 2669899996107899999999983998899899999999986999667733079747754699998666415201-001
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEEEEECC--------CCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEE-CCCCCCCCH-
Q ss_conf 2200134433333311430368897004--------665634657000122234431043110011101-154334520-
Q gi|254780801|r 102 REKTASLLSLEMIKQSRFLPVYIQVNTG--------YEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC-IPPAMGNPK- 171 (222)
Q Consensus 102 s~~~a~~L~~~~~~~~~~~~vliQVN~~--------~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMt-i~p~~~d~~- 171 (222)
|....++|...+.+.+..+.|.+.++.. +..+|+|++++++.++++.+.. +++++.|+-+ ++....++.
T Consensus 90 s~~el~~i~~~~~~~~~~~rv~~~~~~~~~~~~~~~~~~skfG~~~~~~~~~~~~~~~-~~~~~~GiH~h~gs~~~~~~~ 168 (240)
T 1knw_A 90 SVDMLDQLGQVSPGHRVWLRVNPGFGHGHSQKTNTGGENSKHGIWYTDLPAALDVIQR-HHLQLVGIHMHIGSGVDYAHL 168 (240)
T ss_dssp SHHHHHHHHHHSTTCEEEEEEECSCCSSCTTSCCSSSTTCCCSEEGGGHHHHHHHHHH-TTCEEEEEECCCCCTTCHHHH
T ss_pred HHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCEEEEEEEECCCCCCHHHH
T ss_conf 4789999975356674421137886644211235677765453240344678888875-691798888842775326789
Q ss_pred --HHHHHHHHHHHH-CCCCEECCC
Q ss_conf --589999999887-589472247
Q gi|254780801|r 172 --PHFYLLSEIARE-CKLTKLSMG 192 (222)
Q Consensus 172 --~~F~~l~~l~~~-~~~~~LSmG 192 (222)
..-..+..+++. ..+..|.+|
T Consensus 169 ~~~~~~~~~~l~~~~~~~~~idiG 192 (240)
T 1knw_A 169 EQVCGAMVRQVIEFGQDLQAISAG 192 (240)
T ss_dssp HHHHHHHHHHHHHHTCCCSEEECC
T ss_pred HHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 999998877654048146665215
No 26
>>2yxx_A Diaminopimelate decarboxylase; TM1517, TIM beta/alpha barrel fold, lyase, structural genomics, NPPSFA; HET: PLP; 1.70A {Thermotoga maritima MSB8} (A:21-251)
Probab=96.90 E-value=0.013 Score=38.50 Aligned_cols=158 Identities=13% Similarity=0.051 Sum_probs=104.6
Q ss_pred HHCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHH-HCCCCCCCCCEEEECCCCCCHH-HHHCCCCHHCCCCCCC
Q ss_conf 4418998718999999999997298100012100011110-0000125873023024432001-3201110000122222
Q gi|254780801|r 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW-IPLRKEWDVQLRFIGSLQSNKV-SEIVSLFDVIETVSRE 103 (222)
Q Consensus 26 ~~v~LiaVtK~~~~e~I~~~~~~G~~~fGENrvQE~~~K~-~~l~~~~~i~wHfIG~LQsNKv-k~i~~~~~~Ihsvds~ 103 (222)
..+++.-..|..|...|...+....-.|-=.-..|+.--. ..++ .=+..|-|+.-+..- +.++..--.+-.+||+
T Consensus 17 ~~~~~~YavKaN~~~~il~~l~~~g~g~dv~S~~El~~al~~g~~---~~~ii~~~~~k~~~~l~~a~~~gv~~~~~Ds~ 93 (231)
T 2yxx_A 17 VNLLPTFAVKANNNPVLLKILREEGFGXDVVTKGELLAAKLAGVP---SHTVVWNGNGKSRDQXEHFLREDVRIVNVDSF 93 (231)
T ss_dssp SCEEEEEEGGGCCCHHHHHHHHHTTCEEEECSHHHHHHHHHTTCC---GGGEEECCSCCCHHHHHHHHHTTCCEEEECCH
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHCCCEEEECHHHHHHHHHHCCC---CCEEEEECCCCCHHHHHHHHHCCCCCCCCCHH
T ss_conf 896899997228889999999985999798199999999981887---42377403457666620244348643233102
Q ss_pred CHHHHHHHHHHHHCCCEEEEEEEECC------------CCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEE-CCCCCCCC
Q ss_conf 00134433333311430368897004------------665634657000122234431043110011101-15433452
Q gi|254780801|r 104 KTASLLSLEMIKQSRFLPVYIQVNTG------------YEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC-IPPAMGNP 170 (222)
Q Consensus 104 ~~a~~L~~~~~~~~~~~~vliQVN~~------------~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMt-i~p~~~d~ 170 (222)
....++.+.+.+.. .+.+-+|.. +..+|+|+.++++.++++. .+++.+.|+.. ++....++
T Consensus 94 ~el~~i~~~a~~~~---~~~~ri~~~~~~~~~~~~~~~~~~~k~G~~~~~~~~~~~~---~~~~~l~GiH~H~gS~~~~~ 167 (231)
T 2yxx_A 94 EEXEIWRELNPEGV---EYFIRVNPEVDAKTHPHISTGLKKHKFGIPLEDLDSFXER---FRSXNIRGLHVHIGSQITRV 167 (231)
T ss_dssp HHHHHHHHHCCTTC---EEEEEEECCCCTTTSHHHHHHHHHSSSSEEGGGHHHHHHH---HTTSCEEEEECCCCSSBCCS
T ss_pred HHHHHHHHHHCCCH---HEEEECCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHH---HCCCCCEEEEEECCCCCCCC
T ss_conf 33445545301220---0011025520246531454036655565200113689987---42477137987437543345
Q ss_pred H---HHHHHHHHHHHHCCCCEECCC
Q ss_conf 0---589999999887589472247
Q gi|254780801|r 171 K---PHFYLLSEIARECKLTKLSMG 192 (222)
Q Consensus 171 ~---~~F~~l~~l~~~~~~~~LSmG 192 (222)
. .....+.++.+...+..+++|
T Consensus 168 ~~~~~~~~~~~~~~~~~~l~~idiG 192 (231)
T 2yxx_A 168 EPFVEAFSKVVRASERYGFEEINIG 192 (231)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEECC
T ss_pred CHHHHHHHHHHHHHCCCCCCEEECC
T ss_conf 4066799999986400587577337
No 27
>>3btn_A Antizyme inhibitor 1; TIM-like A/B barrel domain and A sheet domain, structural genomics, israel structural proteomics center, ISPC; 2.05A {Mus musculus} (A:61-276)
Probab=96.39 E-value=0.0088 Score=39.58 Aligned_cols=162 Identities=10% Similarity=0.039 Sum_probs=100.2
Q ss_pred HCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHH-HCCCCCCCCCEEEECCCCCCHH-HHHCCCCHHCCCCCCCC
Q ss_conf 418998718999999999997298100012100011110-0000125873023024432001-32011100001222220
Q gi|254780801|r 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW-IPLRKEWDVQLRFIGSLQSNKV-SEIVSLFDVIETVSREK 104 (222)
Q Consensus 27 ~v~LiaVtK~~~~e~I~~~~~~G~~~fGENrvQE~~~K~-~~l~~~~~i~wHfIG~LQsNKv-k~i~~~~~~Ihsvds~~ 104 (222)
+|++.-..|..|...|........-.|==.-..|+..-. ..++ .=+..|-|+.-+.+. +.++..=-.+=++||+.
T Consensus 1 ~~~~~yA~KaN~~~~il~~~~~~g~g~d~~S~~El~~a~~~G~~---~~~ii~~~~~k~~~~i~~a~~~g~~i~~~Ds~~ 77 (216)
T 3btn_A 1 QIKPFYTVKCNSTPAVLEILAALGTGFACSSKNEMALVQELGVS---PENIIFTSPCKQVSQIKYAAKVGVNIMTCDNEI 77 (216)
T ss_dssp TEEEEEEGGGCCCHHHHHHHHHHTCEEEESSHHHHHHHHHTTCC---GGGEEECCSSCCHHHHHHHHHHTCCEEEECSHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCC---HHHEEEECCCCCHHHHHHHHHCCCCCCCCCCHH
T ss_conf 98688774249989999999981997898399999999985988---689798368799999999998699751244088
Q ss_pred HHHHHHHHHHHHCCCEEEEEEEE--CCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEE-CCCCCCCCH---HHHHHHH
Q ss_conf 01344333333114303688970--04665634657000122234431043110011101-154334520---5899999
Q gi|254780801|r 105 TASLLSLEMIKQSRFLPVYIQVN--TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC-IPPAMGNPK---PHFYLLS 178 (222)
Q Consensus 105 ~a~~L~~~~~~~~~~~~vliQVN--~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMt-i~p~~~d~~---~~F~~l~ 178 (222)
.+..+...+.+.+..+.+.+.++ +....+|+|+.++++.++++.+.. .++++.||++ ++....++. .....+.
T Consensus 78 el~~i~~~~~~~~~~~ri~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~-~~l~l~GlH~h~gs~~~~~~~~~~~~~~~~ 156 (216)
T 3btn_A 78 ELKKIARNHPNAKVLLHIATEDNIGGEDGNMKFGTTLKNCRHLLECAKE-LDVQIIGVKFHVSSACKEYQVYVHALSDAR 156 (216)
T ss_dssp HHHHHHHHCTTCEEEEEBCCCC--------CCCCBCHHHHHHHHHHHHH-HTCEEEEEECCCCTTCCCTTHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCEEEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 9999975455664122014443323220125689999999876666542-104322220132212332145678899999
Q ss_pred HHHHHC-----CCCEECCC
Q ss_conf 998875-----89472247
Q gi|254780801|r 179 EIAREC-----KLTKLSMG 192 (222)
Q Consensus 179 ~l~~~~-----~~~~LSmG 192 (222)
.+.+.+ .+..+.+|
T Consensus 157 ~~~~~~~~~g~~~~~idiG 175 (216)
T 3btn_A 157 CVFDMAGEFGFTMNMLDIG 175 (216)
T ss_dssp HHHHHHHHTTCCCCEEECC
T ss_pred HHHHHHHHCCCCEEEEECC
T ss_conf 9999999819950466126
No 28
>>2oo0_A ODC, ornithine decarboxylase; beta-alpha barrel, sheet, lyase; HET: PLP; 1.90A {Homo sapiens} (A:71-289)
Probab=95.48 E-value=0.062 Score=33.89 Aligned_cols=160 Identities=13% Similarity=0.060 Sum_probs=96.4
Q ss_pred CEEEEECCCCCHHHHHH-HHHCCCCCCCCCCCHHHHHHH-HCCCCCCCCCEEEECCCCCC-HHHHHCCCCHHCCCCCCCC
Q ss_conf 18998718999999999-997298100012100011110-00001258730230244320-0132011100001222220
Q gi|254780801|r 28 VSLVAVSKMVDSKKIRV-ALSCGQVIFAENKLQEAKKKW-IPLRKEWDVQLRFIGSLQSN-KVSEIVSLFDVIETVSREK 104 (222)
Q Consensus 28 v~LiaVtK~~~~e~I~~-~~~~G~~~fGENrvQE~~~K~-~~l~~~~~i~wHfIG~LQsN-Kvk~i~~~~~~Ihsvds~~ 104 (222)
+++.-..|+.|...|.. +.+.|.- |-=.-..|+..-. ..++ +=+..|=|+.-+. -++.++..=-.+=.+||+.
T Consensus 2 ~~i~yA~KaN~~~~il~~~~~~g~g-~ev~S~~El~~al~~g~~---~~~ii~~g~~k~~~~l~~a~~~gv~~i~ids~~ 77 (219)
T 2oo0_A 2 VTPFYAVKCNDSKAIVKTLAATGTG-FDCASKTEIQLVQSLGVP---PERIIYANPCKQVSQIKYAANNGVQMMTFDSEV 77 (219)
T ss_dssp EEEEEEGGGCCCHHHHHHHHHHTCE-EEECSHHHHHHHHHTTCC---GGGEEECCSSCCHHHHHHHHHTTCCEEEECSHH
T ss_pred CEEEEEECCCCCHHHHHHHHHCCCC-EEEECHHHHHHHHHCCCC---HHHEEECCCCCCHHHHHHHHHCCCCEEEECCHH
T ss_conf 7688774128989999999983995-898689999999975998---577697578899999999998499758846999
Q ss_pred HHHHHHHHHHHHCCCEEEEEEEE--CCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEE-CCCCCCCCHH---HHHHHH
Q ss_conf 01344333333114303688970--04665634657000122234431043110011101-1543345205---899999
Q gi|254780801|r 105 TASLLSLEMIKQSRFLPVYIQVN--TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC-IPPAMGNPKP---HFYLLS 178 (222)
Q Consensus 105 ~a~~L~~~~~~~~~~~~vliQVN--~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMt-i~p~~~d~~~---~F~~l~ 178 (222)
.+..+.+.+.+.+..+.+.+..+ .++..+|+|++++++.++++.+.. +++++.||.. ++....|+.. ....+.
T Consensus 78 el~~l~~~~~~~~~~~ri~~~~~~~~~~~~~kfG~~~~~~~~~~~~~~~-~~~~l~GlH~H~gs~~~~~~~~~~~~~~~~ 156 (219)
T 2oo0_A 78 ELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLRTSRLLLERAKE-LNIDVVGVSFHVGSGCTDPETFVQAISDAR 156 (219)
T ss_dssp HHHHHHHHCTTCEEEEEECCCCTTSSBCCTTTSCBCHHHHHHHHHHHHH-TTCEEEEEEECCCBSCCCTHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHC-CCCEEEEEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 9999987403574012112334543220101431458888775444430-485078999997012131067999887654
Q ss_pred HHHHH-----CCCCEECCC
Q ss_conf 99887-----589472247
Q gi|254780801|r 179 EIARE-----CKLTKLSMG 192 (222)
Q Consensus 179 ~l~~~-----~~~~~LSmG 192 (222)
++.+. ..+..++.|
T Consensus 157 ~~~~~~~~~g~~l~~idiG 175 (219)
T 2oo0_A 157 CVFDMGAEVGFSMYLLDIG 175 (219)
T ss_dssp HHHHHHHHHTCCCCEEECC
T ss_pred HHHHHHHHCCCCEEEEECC
T ss_conf 5654432038701342016
No 29
>>7odc_A Protein (ornithine decarboxylase); pyridoxal-5'-phosphate, PLP, group IV decarboxylase, polyamines, parasitical, chemotherapy target, putrescine; HET: PLP; 1.60A {Mus musculus} (A:61-279)
Probab=95.03 E-value=0.071 Score=33.47 Aligned_cols=160 Identities=13% Similarity=0.060 Sum_probs=97.9
Q ss_pred CEEEEECCCCCHHHHHHH-HHCCCCCCCCCCCHHHHHH-HHCCCCCCCCCEEEECCCCCC-HHHHHCCCCHHCCCCCCCC
Q ss_conf 189987189999999999-9729810001210001111-000001258730230244320-0132011100001222220
Q gi|254780801|r 28 VSLVAVSKMVDSKKIRVA-LSCGQVIFAENKLQEAKKK-WIPLRKEWDVQLRFIGSLQSN-KVSEIVSLFDVIETVSREK 104 (222)
Q Consensus 28 v~LiaVtK~~~~e~I~~~-~~~G~~~fGENrvQE~~~K-~~~l~~~~~i~wHfIG~LQsN-Kvk~i~~~~~~Ihsvds~~ 104 (222)
|++.-..|..|...|... .+.|.- |==.-..|+.-- ...++ .-+..|=|+--+. -++.++.+-..+=.+||..
T Consensus 2 ~~i~yA~KaN~~~~il~~~~~~g~g-~e~~S~~El~~al~~g~~---~~~i~~~g~~k~~~~l~~a~~~g~~~~~~ds~~ 77 (219)
T 7odc_A 2 VTPFYAVKCNDSRAIVSTLAAIGTG-FDCASKTEIQLVQGLGVP---AERVIYANPCKQVSQIKYAASNGVQMMTFDSEI 77 (219)
T ss_dssp EEEEEEGGGCCCHHHHHHHHHHTCE-EEECSHHHHHHHHHTTCC---GGGEEECCSSCCHHHHHHHHHTTCCEEEECSHH
T ss_pred CEEEEEECCCCCHHHHHHHHHCCCC-EEEECHHHHHHHHHCCCC---HHHEEECCCCCCHHHHHHHHHHCCCEEEECCHH
T ss_conf 8799885228989999999984996-998699999999985998---577798378899999999997086604430024
Q ss_pred HHHHHHHHHHHHCCCEEEEEEEE--CCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEE-CCCCCCCCH---HHHHHHH
Q ss_conf 01344333333114303688970--04665634657000122234431043110011101-154334520---5899999
Q gi|254780801|r 105 TASLLSLEMIKQSRFLPVYIQVN--TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC-IPPAMGNPK---PHFYLLS 178 (222)
Q Consensus 105 ~a~~L~~~~~~~~~~~~vliQVN--~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMt-i~p~~~d~~---~~F~~l~ 178 (222)
.++.+...+.+.+..+.+.+..+ .+...+|+|+.++++.++++.... +++.+.||.. ++....|+. .....+.
T Consensus 78 el~~i~~~~~~~~~~~ri~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~-~~~~l~GlH~h~gs~~~~~~~~~~~~~~~~ 156 (219)
T 7odc_A 78 ELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLLLERAKE-LNIDVIGVSFHVGSGCTDPDTFVQAVSDAR 156 (219)
T ss_dssp HHHHHHHHCTTCEEEEEBCC-----------CCCBCHHHHHHHHHHHHH-TTCEEEEEECCCCSSCCCTHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCEEEEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 7888755245566442112356534456677765078988887766652-584166656864157751677888765566
Q ss_pred HHHHH-----CCCCEECCC
Q ss_conf 99887-----589472247
Q gi|254780801|r 179 EIARE-----CKLTKLSMG 192 (222)
Q Consensus 179 ~l~~~-----~~~~~LSmG 192 (222)
++.+. ..+..+.+|
T Consensus 157 ~~~~~~~~~g~~l~~idiG 175 (219)
T 7odc_A 157 CVFDMATEVGFSMHLLDIG 175 (219)
T ss_dssp HHHHHHHHHTCCCCEEECC
T ss_pred HHHHHHHHEEEEEEEEEEC
T ss_conf 7776421101212478405
No 30
>>2fds_A Orotidine-monophosphate-decarboxylase; TIM barrel, structural genomics, structural genomics consortium, SGC, unknown function; 1.72A {Plasmodium berghei} (A:)
Probab=82.35 E-value=0.34 Score=28.92 Aligned_cols=165 Identities=12% Similarity=0.082 Sum_probs=73.8
Q ss_pred CCCCCCHHHHHHHHCC-----CCCCCCCEEEECCCCCCHHHHHCCC--CHH--CCCCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 0012100011110000-----0125873023024432001320111--000--012222200134433333311430368
Q gi|254780801|r 53 FAENKLQEAKKKWIPL-----RKEWDVQLRFIGSLQSNKVSEIVSL--FDV--IETVSREKTASLLSLEMIKQSRFLPVY 123 (222)
Q Consensus 53 fGENrvQE~~~K~~~l-----~~~~~i~wHfIG~LQsNKvk~i~~~--~~~--Ihsvds~~~a~~L~~~~~~~~~~~~vl 123 (222)
||-.-++++++-.... .=..|.+|.=||..-..-.+..... +|. +|..-.....+.+-..+.+.+ ...++
T Consensus 132 fG~~~i~~Lr~~~~~~~~~~l~Ii~D~K~~DiG~t~~~ya~~~~~~~gaD~vTvh~~~g~~~i~~~~~~~~~~~-~~g~~ 210 (352)
T 2fds_A 132 YGSVGINALKNVFDYLNSMNIPTMLDMKINDIGNTVKNYRKFIFEYLKSDSCTINVYMGTSMLKDICFDYEKNK-YYSAY 210 (352)
T ss_dssp GTHHHHHHHHHHHHHHHHTTCCEEEEEEECCCHHHHHHHHHHHHTTSCCSEEEECCTTCSTTHHHHSEETTTTE-ECEEE
T ss_pred HCHHHHHHHHHHHHHHHCCCCCEEEEEHHCCCHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHCC-CCCCC
T ss_conf 26789999999999862168757985102160779999998643158976788545675889999988887423-45551
Q ss_pred EEEECCCCCCCC---CCCCCHHHHHHHHHHCCCCCCHHHHEECCCCCC-------CCHHHHHHHHHHHHHCCCCEECCCC
Q ss_conf 897004665634---657000122234431043110011101154334-------5205899999998875894722477
Q gi|254780801|r 124 IQVNTGYEIQKS---GIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG-------NPKPHFYLLSEIARECKLTKLSMGM 193 (222)
Q Consensus 124 iQVN~~~e~~K~---G~~p~el~~l~~~i~~~~~L~i~GLMti~p~~~-------d~~~~F~~l~~l~~~~~~~~LSmGM 193 (222)
+=++++...+.. ....+.. ++...+.....--..++.+.++... ...+.....+.+..++..-.-..|.
T Consensus 211 vl~~tSnp~~~~~q~~~~~~~~-~~~~~ia~~~~~~~~~~~~~~~~~~~g~vvgat~~~~~~~~r~~~~~~~~l~pGi~~ 289 (352)
T 2fds_A 211 VLIKTTNKDSFIFQNELSINDK-QAYIVMAEETQKMATDLKIDQNNEFIGFVVGSNAFEEMKIIRNKFPDSYILSPGIGA 289 (352)
T ss_dssp EEEECSSGGGHHHHTTCEETTE-EHHHHHHHHHHHHHHHHTTGGGTCCEEEEECTTCHHHHHHHHHHSTTCCEEECCC--
T ss_pred EEEECCCHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 0111375058888756540477-542037899999999976540247777474677177889999878998599087477
Q ss_pred CHH-------HHHHHHHCCCEEEECHHHCCCCC
Q ss_conf 734-------89999808988997113238999
Q gi|254780801|r 194 TRD-------FELAIASGATSVRIGSGIFGERP 219 (222)
Q Consensus 194 S~D-------~~~Ai~~Gst~vRiGs~iFG~R~ 219 (222)
-+| ...+.+.|++.|=+||+||++.+
T Consensus 290 qggg~~~~~~~~~~~~~GadiivvGR~I~~a~d 322 (352)
T 2fds_A 290 QNGDLYKTLKNGYNKDYEKLLINVGRAITKSPN 322 (352)
T ss_dssp ---CHHHHHHHHCCSSGGGEEEEECHHHHTSSC
T ss_pred CCCCHHHHHCHHHHHHCCCCEEEECHHHCCCCC
T ss_conf 789988885765444449618996902057999
No 31
>>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} (A:)
Probab=78.65 E-value=3 Score=22.50 Aligned_cols=174 Identities=11% Similarity=-0.019 Sum_probs=79.9
Q ss_pred EEEEECCCCCHHHHHHHHH-CCC------------CCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHCC-CC
Q ss_conf 8998718999999999997-298------------100012100011110000012587302302443200132011-10
Q gi|254780801|r 29 SLVAVSKMVDSKKIRVALS-CGQ------------VIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVS-LF 94 (222)
Q Consensus 29 ~LiaVtK~~~~e~I~~~~~-~G~------------~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQsNKvk~i~~-~~ 94 (222)
+|+...-..+.++...+.+ .|. ..+|..-++++........ .+.-|.+...--.-++.+.. .+
T Consensus 2 ~lila~D~~~~e~~l~~i~~~~~~id~~~~~~~~~~~~g~~~i~~l~~~~~~~~---~~~~~~~~~~~~~~~~~a~~~ga 78 (211)
T 3f4w_A 2 KLQLALDELTLPEAMVFMDKVVDDVDIIEVGTPFLIREGVNAIKAIKEKYPHKE---VLADAKIMDGGHFESQLLFDAGA 78 (211)
T ss_dssp EEEEEECSCCHHHHHHHHHHHGGGCSEEEECHHHHHHHTTHHHHHHHHHCTTSE---EEEEEEECSCHHHHHHHHHHTTC
T ss_pred EEEEEECCCCHHHHHHHHHHHCCCCCEEEECEEEHHCCCHHHHHHHHHHCCCHH---HHHHHHCCCCCCHHHHHHHCCCC
T ss_conf 799992589999999999981797669994640021389479999998635245---65653203475047776510458
Q ss_pred HH--CCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEECCCCCCC--C
Q ss_conf 00--0122222001344333333114303688970046656346570001222344310431100111011543345--2
Q gi|254780801|r 95 DV--IETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN--P 170 (222)
Q Consensus 95 ~~--Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMti~p~~~d--~ 170 (222)
|+ +|.......++.+-+...+.+. .+..-.+.+.+ ....... .......+.+..++.... .
T Consensus 79 d~i~vh~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~----------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 143 (211)
T 3f4w_A 79 DYVTVLGVTDVLTIQSCIRAAKEAGK--QVVVDMICVDD----------LPARVRL---LEEAGADMLAVHTGTDQQAAG 143 (211)
T ss_dssp SEEEEETTSCHHHHHHHHHHHHHHTC--EEEEECTTCSS----------HHHHHHH---HHHHTCCEEEEECCHHHHHTT
T ss_pred CEEEEEEECCHHHHHHHHHHHHHHCC--EEEEEECCCCC----------HHHHHHH---HHHCCCCEEEEHHCCCCHHCC
T ss_conf 88999521146678889998764231--44686058979----------9999998---763783325412046641106
Q ss_pred HHHHHHHHHHHHHCCC--CEECCCCC-HHHHHHHHHCCCEEEECHHHCCCCCC
Q ss_conf 0589999999887589--47224777-34899998089889971132389999
Q gi|254780801|r 171 KPHFYLLSEIARECKL--TKLSMGMT-RDFELAIASGATSVRIGSGIFGERPC 220 (222)
Q Consensus 171 ~~~F~~l~~l~~~~~~--~~LSmGMS-~D~~~Ai~~Gst~vRiGs~iFG~R~~ 220 (222)
......++.+.....- -..+-|.+ .+...|++.|++.|=+||+||++.++
T Consensus 144 ~~~~~~~~~~~~~~~~~~v~~~GGi~~~~~~~~~~~Gad~ivVGraI~~a~dp 196 (211)
T 3f4w_A 144 RKPIDDLITMLKVRRKARIAVAGGISSQTVKDYALLGPDVVIVGSAITHAADP 196 (211)
T ss_dssp CCSHHHHHHHHHHCSSCEEEEESSCCTTTHHHHHTTCCSEEEECHHHHTCSSH
T ss_pred CCCHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHCCCCEEEECHHHHCCCCH
T ss_conf 76899999999856997387579856148999998598999988587279999
No 32
>>1eix_A Orotidine 5'-monophosphate decarboxylase; alpha-beta-barrel, protein-inhibitor complex, homodimer, lyase; HET: BMQ; 2.50A {Escherichia coli} (A:)
Probab=76.92 E-value=6.1 Score=20.49 Aligned_cols=183 Identities=10% Similarity=0.097 Sum_probs=87.9
Q ss_pred CEEEEECCCCCHHHHHHHHHCCCC------------CCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHCCC-C
Q ss_conf 189987189999999999972981------------000121000111100000125873023024432001320111-0
Q gi|254780801|r 28 VSLVAVSKMVDSKKIRVALSCGQV------------IFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSL-F 94 (222)
Q Consensus 28 v~LiaVtK~~~~e~I~~~~~~G~~------------~fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQsNKvk~i~~~-~ 94 (222)
.-++|.--+..-+.++.+-+.|.. .||-..+.++.+..... ..+..||-|+.-+.+-++...+. +
T Consensus 16 ~livalD~~~~~~~~~~i~~~~~~v~~~k~~~~~~~~~g~~~i~~l~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~ga 93 (245)
T 1eix_A 16 PVVVALDYHNRDDALAFVDKIDPRDCRLKVGKEMFTLFGPQFVRELQQRGFDI--FLDLKFHDIPNTAAHAVAAAADLGV 93 (245)
T ss_dssp CEEEEECCSSHHHHHHHHTTSCTTTCEEEEEHHHHHHHHHHHHHHHHHTTCCE--EEEEEECSCHHHHHHHHHHHHHHTC
T ss_pred CEEEEECCCCHHHHHHHHHHCCCCCEEEEECHHHHHHCCHHHHHHHHHCCCCH--HHHHHHCCCCCHHHHHHHHHHHCCC
T ss_conf 75999679999999999996389614999678999864899999999659852--4431001478469999999985489
Q ss_pred HH--CCCCCCCCHHHHHHHHHHHHCCCEEE-EEEEECCCCC-CC---CCCCCCHHHHHHHHHH-CCCCCCHHHHEECCCC
Q ss_conf 00--01222220013443333331143036-8897004665-63---4657000122234431-0431100111011543
Q gi|254780801|r 95 DV--IETVSREKTASLLSLEMIKQSRFLPV-YIQVNTGYEI-QK---SGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPA 166 (222)
Q Consensus 95 ~~--Ihsvds~~~a~~L~~~~~~~~~~~~v-liQVN~~~e~-~K---~G~~p~el~~l~~~i~-~~~~L~i~GLMti~p~ 166 (222)
|+ +|..--....+.+...+.+..+...+ +.-++....+ +. .|. .....+.+..+. -...+-..|+-+.+..
T Consensus 94 D~vtvh~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~G~~g~~~~~~~ 172 (245)
T 1eix_A 94 WMVNVHASGGARMMTAAREALVPFGKDAPLLIAVTVLTSMEASDLVDLGM-TLSPADYAERLAALTQKCGLDGVVCSAQE 172 (245)
T ss_dssp SEEEEBGGGCHHHHHHHHHTTGGGGGGCCEEEEECSCTTCCHHHHHTTTC-CSCHHHHHHHHHHHHHHTTCSEEECCGGG
T ss_pred CEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCC-CCCHHHHHHHHHHHHHHCCCCEEEECHHH
T ss_conf 99998633799999999999998287776599986589999899997443-78899999999998998099989978878
Q ss_pred CCCCHHHHHHHHHHHHHCC----CCEECCCCCHH-------HHHHHHHCCCEEEECHHHCCCCCC
Q ss_conf 3452058999999988758----94722477734-------899998089889971132389999
Q gi|254780801|r 167 MGNPKPHFYLLSEIARECK----LTKLSMGMTRD-------FELAIASGATSVRIGSGIFGERPC 220 (222)
Q Consensus 167 ~~d~~~~F~~l~~l~~~~~----~~~LSmGMS~D-------~~~Ai~~Gst~vRiGs~iFG~R~~ 220 (222)
...++++..... ...++.|-+.| ...+++.|+..+=+|++||+..++
T Consensus 173 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~Ga~~ivvGR~I~~a~dp 230 (245)
T 1eix_A 173 -------AVRFKQVFGQEFKLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGRPVTQSVDP 230 (245)
T ss_dssp -------HHHHHHHHCSSSEEEECCBCCTTCCCTTCCSCBCHHHHHHTTCSEEEECHHHHTSSSH
T ss_pred -------HHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEECHHHCCCCCH
T ss_conf -------9999987254555880475754545488777479999998599999989566179999
No 33
>>2h8z_A Xenobiotic reductase A; beta-alpha barrel, oxidoreductase; HET: FMN 8CM; 1.42A {Pseudomonas putida} PDB: 2h90_A* 2h8x_A* (A:1-104,A:149-359)
Probab=74.04 E-value=7.2 Score=20.00 Aligned_cols=116 Identities=14% Similarity=0.009 Sum_probs=73.3
Q ss_pred CCCHHHHHHHHH-HHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHC--CCCCCHHHHEECCCCC-CCCHHH-HHH
Q ss_conf 220013443333-33114303688970046656346570001222344310--4311001110115433-452058-999
Q gi|254780801|r 102 REKTASLLSLEM-IKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ--KYQLNVEGLMCIPPAM-GNPKPH-FYL 176 (222)
Q Consensus 102 s~~~a~~L~~~~-~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~--~~~L~i~GLMti~p~~-~d~~~~-F~~ 176 (222)
+..++.++-+.. ...+.+..|-+-++..+.....+...++..+++..+.+ ...|.+.+-+..+... ..+... ...
T Consensus 162 r~~~~~eii~~ir~~~g~~~~v~~R~~~~d~~~~~~~~~e~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~~~~~~~~~~~ 241 (315)
T 2h8z_A 162 RSRFLLETLAAVREVWPENLPLTARFGVLEYDGRDEQTLEESIELARRFKAGGLDLLSVSVGFTIPDTNIPWGPAFMGPI 241 (315)
T ss_dssp HHHHHHHHHHHHHTTSCTTSCEEEEEECCCSSSCHHHHHHHHHHHHHHHHHTTCCEEEEECCCCSSCCCCCCCTTTTHHH
T ss_pred CHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCHHH
T ss_conf 11456666663243032125554346732235556774467888889998659754775301311674433474310689
Q ss_pred HHHHHHHCCCCEECCCCC---HHHHHHHHHC-CCEEEECHHHCCC
Q ss_conf 999988758947224777---3489999808-9889971132389
Q gi|254780801|r 177 LSEIARECKLTKLSMGMT---RDFELAIASG-ATSVRIGSGIFGE 217 (222)
Q Consensus 177 l~~l~~~~~~~~LSmGMS---~D~~~Ai~~G-st~vRiGs~iFG~ 217 (222)
.+.+++..+.+...-|.= .|.+.++++| +.+|=||++++..
T Consensus 242 ~~~ir~~~~ipvi~~GgI~s~e~a~~~l~~g~~D~V~igR~~l~d 286 (315)
T 2h8z_A 242 AERVRREAKLPVTSAWGFGTPQLAEAALQANQLDLVSVGRAHLAD 286 (315)
T ss_dssp HHHHHHHHTCCEEECSSTTSHHHHHHHHHTTSCSEEECCHHHHHC
T ss_pred HHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCCCHHHHHHHHHC
T ss_conf 999998749608997686999999999987995331663998869
No 34
>>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, amino-acid biosynthesis cobalamin, precorrin, novel fold; 2.10A {Thermotoga maritima} (A:)
Probab=72.64 E-value=6.7 Score=20.20 Aligned_cols=84 Identities=14% Similarity=0.023 Sum_probs=52.3
Q ss_pred CCCCCCCCHHHH--HHHHHHCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHCCCCEECCC---CCHHHHHHHHHCCCE
Q ss_conf 634657000122--234431043110011101154334520589999999887589472247---773489999808988
Q gi|254780801|r 133 QKSGIMPNQTKD--FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMG---MTRDFELAIASGATS 207 (222)
Q Consensus 133 ~K~G~~p~el~~--l~~~i~~~~~L~i~GLMti~p~~~d~~~~F~~l~~l~~~~~~~~LSmG---MS~D~~~Ai~~Gst~ 207 (222)
.+.|+...+... ++..+.. ...................+.+..++++++....+.+.-| --.|...|++.|+..
T Consensus 147 ~~~~~~~~~~~~~~~a~~~~~-~g~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~iPvi~~GGI~t~~D~~~~l~~GAd~ 225 (266)
T 2w6r_A 147 THSGKKNTGILLRDWVVEVEK-RGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADA 225 (266)
T ss_dssp ETTTTEEEEEEHHHHHHHHHH-TTCSEEEEEETTTTTTCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHHTCSE
T ss_pred ECCCCCCCCCCCHHHHHHHHC-CCCCEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCE
T ss_conf 767850168720233543315-5858589988878798688767999999861897789994799999999999789979
Q ss_pred EEECHHHCCC
Q ss_conf 9971132389
Q gi|254780801|r 208 VRIGSGIFGE 217 (222)
Q Consensus 208 vRiGs~iFG~ 217 (222)
|=|||++++.
T Consensus 226 V~iGta~~~~ 235 (266)
T 2w6r_A 226 ALAASVFHFR 235 (266)
T ss_dssp EEESTTTC--
T ss_pred EEEEEHHHCC
T ss_conf 9980055659
No 35
>>3g1v_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, D70G; HET: 5FU; 1.30A {Methanothermobacter thermautotrophicusstr} PDB: 3g1s_A* 3g1x_A* 1kly_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3g1a_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 1loq_A* 1lor_A* 1km0_A* 1dv7_A 2zz3_A* 1km1_A* 1km6_A* 1km5_A* ... (A:)
Probab=70.94 E-value=8.4 Score=19.53 Aligned_cols=179 Identities=11% Similarity=-0.006 Sum_probs=84.9
Q ss_pred HCEEEEECCCCCHHHHHHHHHCCC------------CCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHCCC-
Q ss_conf 418998718999999999997298------------1000121000111100000125873023024432001320111-
Q gi|254780801|r 27 SVSLVAVSKMVDSKKIRVALSCGQ------------VIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSL- 93 (222)
Q Consensus 27 ~v~LiaVtK~~~~e~I~~~~~~G~------------~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQsNKvk~i~~~- 93 (222)
..-++|.=-....+.++.+-+.|. ..||..-+.++..... .+-..+...|-|+....+-++...+.
T Consensus 13 ~~liva~D~~~~~~~l~~i~~~~~~v~~~~~g~~~~~~~g~~~i~~l~~~~~-~~i~~d~k~~di~~~~~~~~~~~~~~g 91 (228)
T 3g1v_A 13 NRLILAMDLMNRDDALRVTGEVREYIDTVKIGYPLVLSEGMDIIAEFRKRFG-CRIIAGFKVADIPETNEKICRATFKAG 91 (228)
T ss_dssp GGEEEEECCSSHHHHHHHHHHHTTTCSEEEECHHHHHHHCTHHHHHHHHHHC-CEEEEEEEECSCHHHHHHHHHHHHHTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCCEEEECHHHHHHCCHHHHHHHHHHCC-CEEEEECHHHHHHHHHHHHHHHHHHCC
T ss_conf 8869995279999999999984886629998799997449999999997689-809985023218779999999998549
Q ss_pred CHHC--CCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEECCCCCCCCH
Q ss_conf 0000--12222200134433333311430368897004665634657000122234431043110011101154334520
Q gi|254780801|r 94 FDVI--ETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK 171 (222)
Q Consensus 94 ~~~I--hsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMti~p~~~d~~ 171 (222)
+|++ |........+.+........+ ..+-+.....+..-... +...+.+..+...+ |-... +-..
T Consensus 92 ad~v~v~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~t~~~~~~~~-~~~~~~~~~~~~~~-----~~~G~----~~~~ 158 (228)
T 3g1v_A 92 ADAIIVHGFPGADSVRACLNVAEEMGR---EVFLLTEMSHPGAEMFI-QGAADEIARMGVDL-----GVKNY----VGPS 158 (228)
T ss_dssp CSEEEEESTTCHHHHHHHHHHHHHHTC---EEEEECSCSSGGGGTTH-HHHHHHHHHHHHHT-----TCCEE----ECCT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHCC---CEEEEECCCCCCHHHHH-HHHHHHHHHHHHHH-----CCCCE----ECCC
T ss_conf 989998613897899999999885188---40341011465177777-77999999999983-----88730----2355
Q ss_pred HHHHHHHHHHHHCC---CCEECCCCCH-HHHHHHHHCCCEEEECHHHCCCCC
Q ss_conf 58999999988758---9472247773-489999808988997113238999
Q gi|254780801|r 172 PHFYLLSEIARECK---LTKLSMGMTR-DFELAIASGATSVRIGSGIFGERP 219 (222)
Q Consensus 172 ~~F~~l~~l~~~~~---~~~LSmGMS~-D~~~Ai~~Gst~vRiGs~iFG~R~ 219 (222)
........++.... .-....|.+. +-+.|++.|++.|=+||+||..++
T Consensus 159 ~~~~~~~~~~~~~~~~~~i~~~Gg~~~~~~~~~~~~Gad~vvvGr~I~~a~d 210 (228)
T 3g1v_A 159 TRPERLSRLREIIGQDSFLISPGVGAQGGDPGETLRFADAIIVGRSIYLADN 210 (228)
T ss_dssp TCHHHHHHHHHHHCTTSEEEECCBSTTSBCHHHHTTTCSEEEECHHHHTSSS
T ss_pred CCHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHCCEEEECHHHCCCCC
T ss_conf 7999999999853887189966887688997788753999998912326999
No 36
>>3ldv_A Orotidine 5'-phosphate decarboxylase; structural genomics, infectious diseases; 1.77A {Vibrio cholerae o1 biovar el tor} (A:)
Probab=68.02 E-value=0.96 Score=25.88 Aligned_cols=184 Identities=14% Similarity=0.031 Sum_probs=89.2
Q ss_pred HHCEEEEECCCCCHHHHHHHHHCCCC------------CCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHCCC
Q ss_conf 44189987189999999999972981------------000121000111100000125873023024432001320111
Q gi|254780801|r 26 DSVSLVAVSKMVDSKKIRVALSCGQV------------IFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSL 93 (222)
Q Consensus 26 ~~v~LiaVtK~~~~e~I~~~~~~G~~------------~fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQsNKvk~i~~~ 93 (222)
.+.-++|.-.....+.+..+-+.|.. .||...++++++......- |.++.-||+.-.+-+...+..
T Consensus 27 ~~~~i~a~D~~~~~~~i~~~~~~~~~v~~~k~~~~~~~~~g~~~i~~l~~~~~~i~~--D~k~~di~~t~~~~~~~~~~~ 104 (255)
T 3ldv_A 27 DPKVIVALDYDNLADALAFVDKIDPSTCRLKVGKEMFTLFGPDFVRELHKRGFSVFL--DLKFHDIPNTCSKAVKAAAEL 104 (255)
T ss_dssp CCCEEEEECCSSHHHHHHHHTTSCGGGCEEEEEHHHHHHHHHHHHHHHHHTTCCEEE--EEEECSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCCEEEECHHHHHHHCHHHHHHHHHCCCCEEE--EEECCCCHHHHHHHHHHHHHH
T ss_conf 997699956899999999999847856599989698765099999999957995999--953044638999999998740
Q ss_pred -CHH--CCCCCCCCHHHHHHHHHHHHCCCEEEEEEE-ECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEECCCCC--
Q ss_conf -000--012222200134433333311430368897-00466563465700012223443104311001110115433--
Q gi|254780801|r 94 -FDV--IETVSREKTASLLSLEMIKQSRFLPVYIQV-NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM-- 167 (222)
Q Consensus 94 -~~~--Ihsvds~~~a~~L~~~~~~~~~~~~vliQV-N~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMti~p~~-- 167 (222)
+|+ +|.--.....+.+-+...+..+...++.-. +.... ...++... ....+-+...-.|+.-|..
T Consensus 105 gaD~vtvh~~~g~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~------~~~~~~~~---~~~~~~~~~v~~~~~~~g~~G 175 (255)
T 3ldv_A 105 GVWMVNVHASGGERMMAASREILEPYGKERPLLIGVTVLTSM------ESADLQGI---GILSAPQDHVLRLATLTKNAG 175 (255)
T ss_dssp TCSEEEEEGGGCHHHHHHHHHHHGGGGGGSCEEEEECSCTTC------CHHHHHHT---TCCSCHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCC------CHHHHHHH---CCCCCHHHHHHHHHHHHHHCC
T ss_conf 777899715661888899998887417766158887642544------66779861---456999999999886776418
Q ss_pred CC-CHHHHHHHHHHHHHCC--CCEE-----CCCCCH-------HHHHHHHHCCCEEEECHHHCCCCCC
Q ss_conf 45-2058999999988758--9472-----247773-------4899998089889971132389999
Q gi|254780801|r 168 GN-PKPHFYLLSEIARECK--LTKL-----SMGMTR-------DFELAIASGATSVRIGSGIFGERPC 220 (222)
Q Consensus 168 ~d-~~~~F~~l~~l~~~~~--~~~L-----SmGMS~-------D~~~Ai~~Gst~vRiGs~iFG~R~~ 220 (222)
.+ ......+.+.+++... +..+ .-|-+. ..+.|++.|+..+=+||+||++.++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~dgg~~~~~~~~~~~~Gad~ivvGR~I~~a~dp 243 (255)
T 3ldv_A 176 LDGVVCSAQEASLLKQHLGREFKLVTPGIRPAGSEQGDQRRIMTPAQAIASGSDYLVIGRPITQAAHP 243 (255)
T ss_dssp CSEEECCHHHHHHHHHHHCTTSEEEEECCCCTTSTTSSCSSSCCHHHHHHTTCSEEEECHHHHTCSCH
T ss_pred CCCCCCCHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEECCCCCCCCCH
T ss_conf 76544588899999975177654875651047876567633279999998799999989835689899
No 37
>>3bpw_A Orotidine 5'-phosphate decarboxylase; P. falciparum, orotidine 5'- monophosphate decarboxylase, XMP, lyase, pyrimidine biosynthesis; HET: XMP; 1.70A {Plasmodium falciparum} PDB: 2qaf_A* 3bar_A* 2q8z_A* 2f84_A 2q8l_A 2za1_A* 2za2_A 2za3_A* 2zcg_A (A:)
Probab=66.29 E-value=2.4 Score=23.17 Aligned_cols=143 Identities=10% Similarity=0.046 Sum_probs=71.1
Q ss_pred CCCEEEECCCCCCHHHHHCC--CCHHC--CCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCC-----CCCHHH
Q ss_conf 87302302443200132011--10000--1222220013443333331143036889700466563465-----700012
Q gi|254780801|r 73 DVQLRFIGSLQSNKVSEIVS--LFDVI--ETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-----MPNQTK 143 (222)
Q Consensus 73 ~i~wHfIG~LQsNKvk~i~~--~~~~I--hsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~-----~p~el~ 143 (222)
+.++.-||..-.+-...... .+|+| |-.--......+.+.. +......++++.|++......+- .+.++.
T Consensus 155 d~k~~d~g~T~~~~a~~~~~~~gaD~vtvn~~~G~~~~~~~~~~~-~~~~~~~v~v~~~~~~p~~~~~~~~~~~~~~~~~ 233 (342)
T 3bpw_A 155 DMKINDIGNTVKNYRKFIFEYLKSDSCTVNIYMGTNMLKDICYDE-EKNKYYSAFVLVKTTNPDSAIFQKNLSLDNKQAY 233 (342)
T ss_dssp EEEECCCHHHHHHHHHHHHTTSCCSEEEECCTTCSGGGGGTSEET-TTTEECEEEEEEECCSTTTHHHHTTCEETTEEHH
T ss_pred EECCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHH-HHCCCCCEEEEEECCCCHHHHHHHHHCCCCCHHH
T ss_conf 710157468999999997641478789976876576789999998-7435675178873488468888765303450689
Q ss_pred -HHHHHHHCCC-------CCCHHHHEECCCCCCCCHHHHHHHHHHHHHCCCCEECCCCCH-------HHHHHHHHCCCEE
Q ss_conf -2234431043-------110011101154334520589999999887589472247773-------4899998089889
Q gi|254780801|r 144 -DFVILCRQKY-------QLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTR-------DFELAIASGATSV 208 (222)
Q Consensus 144 -~l~~~i~~~~-------~L~i~GLMti~p~~~d~~~~F~~l~~l~~~~~~~~LSmGMS~-------D~~~Ai~~Gst~v 208 (222)
..++.+.++. ..-+.|..|-+. .-+....++++..+.....-..++.. -+..++..|++.|
T Consensus 234 ~~~~~~~~~~~~~~i~~~~~g~~G~v~~~t----~pe~I~~l~~~~~~~~~~~pg~~~~~~g~~~~~t~~~~~~~g~d~i 309 (342)
T 3bpw_A 234 VIMAQEALNMSSYLNLEQNNEFIGFVVGAN----SYDEMNYIRTYFPNCYILSPGIGAQNGDLHKTLTNGYHKSYEKILI 309 (342)
T ss_dssp HHHHHHHHHHHHHHTTGGGTCCEEEEECTT----CHHHHHHHHHHSTTCCEEECCSSSSCCCHHHHHHHHCCSSGGGEEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCEEEEEC----CHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHCHHHHHHCCCEEE
T ss_conf 999999999999987640125677588827----5898899998689986992886767899777749876855596499
Q ss_pred EECHHHCCCCCC
Q ss_conf 971132389999
Q gi|254780801|r 209 RIGSGIFGERPC 220 (222)
Q Consensus 209 RiGs~iFG~R~~ 220 (222)
-+|++||++-++
T Consensus 310 vvGr~I~~a~~~ 321 (342)
T 3bpw_A 310 NIGRAITKNPYP 321 (342)
T ss_dssp EECHHHHTSSSH
T ss_pred EECHHHCCCCCH
T ss_conf 968553379999
No 38
>>2yyu_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural genomics, NPPSFA; HET: C5P; 2.20A {Geobacillus kaustophilus} PDB: 2yyt_A* (A:)
Probab=65.33 E-value=1.4 Score=24.81 Aligned_cols=185 Identities=10% Similarity=-0.049 Sum_probs=88.9
Q ss_pred CEEEEECCCCCHHHHHHHHHCCC------------CCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHCCC-C
Q ss_conf 18998718999999999997298------------1000121000111100000125873023024432001320111-0
Q gi|254780801|r 28 VSLVAVSKMVDSKKIRVALSCGQ------------VIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSL-F 94 (222)
Q Consensus 28 v~LiaVtK~~~~e~I~~~~~~G~------------~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQsNKvk~i~~~-~ 94 (222)
+-++|.-....-+.++.+-.+|. ..||..-++++++..... ..+++.|-||.-...-++..... +
T Consensus 6 ~li~alD~~~l~~~i~~i~~~~~~vd~~k~g~~~~~~~G~~~i~~l~~~~~~i--~~d~k~~di~~t~~~~~~~~~~~ga 83 (246)
T 2yyu_A 6 PFIVALDFPSKQEVERFLRPFAGTPLFVKVGMELYYQEGPAIVAFLKEQGHAV--FLDLKLHDIPNTVKQAMKGLARVGA 83 (246)
T ss_dssp CEEEECCCSSHHHHHHHHGGGTTSCCEEEECHHHHHHHTHHHHHHHHHTTCEE--EEEEEECSCHHHHHHHHHHHHHTTC
T ss_pred CEEEEECCCCHHHHHHHHHHCCCCCEEEEECHHHHHHHCHHHHHHHHHHCCCE--EEEEEECCCCHHHHHHHHHHHCCCC
T ss_conf 98999748999999999998088531999898998510989999998628856--5211003657689999987622675
Q ss_pred HH--CCC---CCCCCHHHHHHHHHHHHCCC--EEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEECCCCC
Q ss_conf 00--012---22220013443333331143--036889700466563465700012223443104311001110115433
Q gi|254780801|r 95 DV--IET---VSREKTASLLSLEMIKQSRF--LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM 167 (222)
Q Consensus 95 ~~--Ihs---vds~~~a~~L~~~~~~~~~~--~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMti~p~~ 167 (222)
|+ +|. .|++..+..+.+.....+.. ..+.++++........--.+.....+++.+.. .=.|+..|-.
T Consensus 84 D~vtvh~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~------~~~~~~~~g~ 157 (246)
T 2yyu_A 84 DLVNVHAAGGRRMMEAAIEGLDAGTPSGRMRPRCIAVTQLTSTDERMLHEELWISRPLVETVAH------YAALAKESGL 157 (246)
T ss_dssp SEEEEEGGGCHHHHHHHHHHHHHHSCSSSCCCEEEEESSCTTCCHHHHHHTSCCCSCHHHHHHH------HHHHHHHHTC
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH------HHHHHHHCCC
T ss_conf 0788723554057999998631013212456527987236653378887644420016789999------9999987298
Q ss_pred C---CCHHHHHHHHHHHHHCCC----CEECCCCCH-------HHHHHHHHCCCEEEECHHHCCCCCC
Q ss_conf 4---520589999999887589----472247773-------4899998089889971132389999
Q gi|254780801|r 168 G---NPKPHFYLLSEIARECKL----TKLSMGMTR-------DFELAIASGATSVRIGSGIFGERPC 220 (222)
Q Consensus 168 ~---d~~~~F~~l~~l~~~~~~----~~LSmGMS~-------D~~~Ai~~Gst~vRiGs~iFG~R~~ 220 (222)
. -.......++++...... ...+.|-+. ....+++.|+..|=+||+||++...
T Consensus 158 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~Gad~vvvGr~I~~a~dp 224 (246)
T 2yyu_A 158 DGVVCSANEAAFIKERCGASFLAVTPGIRFADDAAHDQVRVVTPRKARALGSDYIVIGRSLTRAADP 224 (246)
T ss_dssp CEEECCHHHHHHHHHHHCTTSEEEECCCCCCC-------CCCCHHHHHHHTCSEEEECHHHHTSSSH
T ss_pred CCEECCHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEECCCCCCCCCH
T ss_conf 5233103454454412477750782441467777778241289999998499999989633689999
No 39
>>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} (A:1-111,A:154-364)
Probab=63.79 E-value=12 Score=18.60 Aligned_cols=117 Identities=15% Similarity=0.062 Sum_probs=63.4
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEECCCCCCCCHHHHHHHHHH
Q ss_conf 22200134433333311430368897004665634657000122234431043110011101154334520589999999
Q gi|254780801|r 101 SREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180 (222)
Q Consensus 101 ds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMti~p~~~d~~~~F~~l~~l 180 (222)
.+.+++.++-....+.-...+|-+-++.........-....+.+++..+..+....+..+....+........+...+.+
T Consensus 167 nr~r~~~eiI~avr~~~~~~pV~vKi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 246 (322)
T 1vyr_A 167 NRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQNVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQK 246 (322)
T ss_dssp HHTHHHHHHHHHHHHHSCGGGEEEEECCSSCBTTBCCCTTHHHHHHHHHHHHHHTTCSEEEEECCBTTBCCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHH
T ss_conf 33376788888766540467653020232342220002551789999999877429737412337633576644888998
Q ss_pred HHHCCCCEECCCCCH---HHHHHHHHC-CCEEEECHHHCCC
Q ss_conf 887589472247773---489999808-9889971132389
Q gi|254780801|r 181 ARECKLTKLSMGMTR---DFELAIASG-ATSVRIGSGIFGE 217 (222)
Q Consensus 181 ~~~~~~~~LSmGMS~---D~~~Ai~~G-st~vRiGs~iFG~ 217 (222)
++......+--|.=. |.+.++++| ..+|=+|+.++..
T Consensus 247 ~~~~~~pvi~~GgI~~~e~a~~~l~~g~~D~V~igR~~lad 287 (322)
T 1vyr_A 247 VRERFHGVIIGAGAYTAEKAEDLIGKGLIDAVAFGRDYIAN 287 (322)
T ss_dssp HHHHCCSEEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHC
T ss_pred HHHHCCCEEEECCCCCHHHHHHHHHCCCCCEEHHHHHHHHC
T ss_conf 89865844996689999999999987997457455999879
No 40
>>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, structural genomics, joint center for structural genomics, JCSG; 1.91A {Haemophilus somnus 129PT} (A:)
Probab=62.13 E-value=12 Score=18.40 Aligned_cols=184 Identities=9% Similarity=0.018 Sum_probs=89.2
Q ss_pred HCEEEEECCCCCHHHHHHHHHCCCCC----CCC-CCCH---HHHHHHHCCCCCCCCCEEEECCCCCCHHHHHCCC-CHH-
Q ss_conf 41899871899999999999729810----001-2100---0111100000125873023024432001320111-000-
Q gi|254780801|r 27 SVSLVAVSKMVDSKKIRVALSCGQVI----FAE-NKLQ---EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSL-FDV- 96 (222)
Q Consensus 27 ~v~LiaVtK~~~~e~I~~~~~~G~~~----fGE-NrvQ---E~~~K~~~l~~~~~i~wHfIG~LQsNKvk~i~~~-~~~- 96 (222)
.+.|.+....+-.+.++.+-+.|... +-| +++- +..+-...++...++.-|+--.=--+.++.++.. +|+
T Consensus 17 ~~sl~~~d~~~~~~~i~~~~~~g~~~ihvDimD~~f~~~~~~G~~~i~~i~~~~pi~~hL~~~d~~~~i~~~~~aGad~i 96 (237)
T 3cu2_A 17 SVGILSANWLQLNEEVTTLLENQINVLHFDIADGQFSSLFTVGAIGIKYFPTHCFKDVHLXVRNQLEVAKAVVANGANLV 96 (237)
T ss_dssp EEEGGGSCGGGHHHHHHHHHHTTCCEEEEEEEBSSSSSCBCBCTHHHHTSCTTSEEEEEEECSCHHHHHHHHHHTTCSEE
T ss_pred EHHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEECCCCHHHHHCCCCCEEE
T ss_conf 77464179999999999999779997999786895476757598999975304787515897335311122203676289
Q ss_pred -CCCCCCCCHHHHHHHHHH--HHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEECCCCCCC---C
Q ss_conf -012222200134433333--3114303688970046656346570001222344310431100111011543345---2
Q gi|254780801|r 97 -IETVSREKTASLLSLEMI--KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---P 170 (222)
Q Consensus 97 -Ihsvds~~~a~~L~~~~~--~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMti~p~~~d---~ 170 (222)
+|.--.....+.++...+ ........-+++-+.. .|+--.+.+.. -.+.+...-+|++-|-.+. .
T Consensus 97 tvh~ea~~~~~~~l~~I~~~~~~~~~~~~~i~~gl~~-------~p~t~~~~~~~--~~~~vd~vlimsv~pG~~gq~~~ 167 (237)
T 3cu2_A 97 TLQLEQYHDFALTIEWLAKQKTTYANQVYPVLIGACL-------CPETPISELEP--YLDQIDVIQLLTLDPRNGTKYPS 167 (237)
T ss_dssp EEETTCTTSHHHHHHHHTTCEEEETTEEEECEEEEEE-------CTTSCGGGGTT--TTTTCSEEEEESEETTTTEECCH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEE-------CCCCCHHHHHH--HHHHHHHEEEEECCCCCCCCCCC
T ss_conf 9964666668999998776656667654034665265-------05676999999--88553001475136742343221
Q ss_pred HHHHHHHHHHHHHCC---CC---EECCCCCH-HHHHHHHHCC--CEEEECHHHCCCCC
Q ss_conf 058999999988758---94---72247773-4899998089--88997113238999
Q gi|254780801|r 171 KPHFYLLSEIARECK---LT---KLSMGMTR-DFELAIASGA--TSVRIGSGIFGERP 219 (222)
Q Consensus 171 ~~~F~~l~~l~~~~~---~~---~LSmGMS~-D~~~Ai~~Gs--t~vRiGs~iFG~R~ 219 (222)
...+.+++.+++... .. +.-=|-+. ..+..++.|+ +.+=+||+||++-+
T Consensus 168 ~~~~~ki~~~~~~~~~~~~~~~I~vdGGi~~~ti~~~~~aGa~vD~iVvGsaIf~~~~ 225 (237)
T 3cu2_A 168 ELILDRVIQVEKRLGNRRVEKLINIDGSXTLELAKYFKQGTHQIDWLVSGSALFSGEL 225 (237)
T ss_dssp HHHHHHHHHHHHHHGGGGGGCEEEEESSCCHHHHHHHHHSSSCCCCEEECGGGGSSCH
T ss_pred CHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCCCEEEECCCEECCCH
T ss_conf 0036788888887554599868999799288889999972389998996852149688
No 41
>>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A* (A:1-110,A:153-365)
Probab=59.58 E-value=14 Score=18.11 Aligned_cols=188 Identities=10% Similarity=-0.001 Sum_probs=90.0
Q ss_pred HHHHHHHHHCCCCHHHCEEE-EECCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEE-C-------CC
Q ss_conf 99999999819896441899-871899999999999729810001210001111000001258730230-2-------44
Q gi|254780801|r 12 QKIENSAILAKRPKDSVSLV-AVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFI-G-------SL 82 (222)
Q Consensus 12 ~~I~~a~~~~gR~~~~v~Li-aVtK~~~~e~I~~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfI-G-------~L 82 (222)
+++..+....|- .--++|. +=.|..|.++|....+. |+ +-+.. +.+.. ..-|..|+= | -=
T Consensus 84 ~~~~~~vh~~g~-~~~~Ql~h~Gr~a~~~eeI~~~~~~----f~----~AA~~-a~~aG-fDgVeIn~ghgyL~~qFlcP 152 (323)
T 2gou_A 84 RIVTEAVHAKGC-AIFAQLWHVGRVTHPKADIAQVIAD----YR----QAALN-AMEAG-FDGIELHAANGYLINQFIDS 152 (323)
T ss_dssp HHHHHHHHHHSC-EEEEEEECCTTSSCGHHHHHHHHHH----HH----HHHHH-HHHTT-CSEEEEECCTTSHHHHHHSG
T ss_pred HHHHHHHHHCCC-CEEEEEECCCCCCCCHHHHHHHHHH----HH----HHHHH-HHHCC-CCEEEEEECCCHHHHHHHHH
T ss_conf 789999975798-2475210240102559999999999----99----99999-99829-98899814604489998887
Q ss_pred CCCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCC--CCCCHHHH
Q ss_conf 3200132011100001222220013443333331143036889700466563465700012223443104--31100111
Q gi|254780801|r 83 QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK--YQLNVEGL 160 (222)
Q Consensus 83 QsNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~--~~L~i~GL 160 (222)
++|..+.-.+-. -..+.+++.++-....+.-....+-+-++.. +....|..+++..+++..+.+. ..|.+-+-
T Consensus 153 ~~n~r~d~yGgs----l~~r~r~~~eii~avr~~v~~~~v~vris~~-~~~~~~~~~~e~~~~~~~l~~~g~d~i~v~~~ 227 (323)
T 2gou_A 153 EANNRSDEYGGS----LENRLRFLDEVVAALVDAIGAERVGVRLAPL-TTLNGTVDADPILTYTAAAALLNKHRIVYLHI 227 (323)
T ss_dssp GGCCCCSTTSSS----HHHHTHHHHHHHHHHHHHHCGGGEEEEECSS-CCTTSCCCSSHHHHHHHHHHHHHHTTCSEEEE
T ss_pred HCCCCCCCCCCC----HHHHHHHHHHHHHHHHHHCCCCCCCEEECCC-CCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf 647776545640----5566789999988888643886654052141-23479765530567789998764158407852
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHCCCCEECCCC---CHHHHHHHHHC-CCEEEECHHHCCC
Q ss_conf 011543345205899999998875894722477---73489999808-9889971132389
Q gi|254780801|r 161 MCIPPAMGNPKPHFYLLSEIARECKLTKLSMGM---TRDFELAIASG-ATSVRIGSGIFGE 217 (222)
Q Consensus 161 Mti~p~~~d~~~~F~~l~~l~~~~~~~~LSmGM---S~D~~~Ai~~G-st~vRiGs~iFG~ 217 (222)
+..... .....+...+.+++....+.+-.|- ..|++.++++| ++.|=+|+.++..
T Consensus 228 ~~~~~~--~~~~~~~~~~~i~~~~~~pvi~nG~i~s~~~a~~~l~~g~~D~V~igR~~l~n 286 (323)
T 2gou_A 228 AEVDWD--DAPDTPVSFKRALREAYQGVLIYAGRYNAEKAEQAINDGLADMIGFGRPFIAN 286 (323)
T ss_dssp ECCBTT--BCCCCCHHHHHHHHHHCCSEEEEESSCCHHHHHHHHHTTSCSEEECCHHHHHC
T ss_pred CCCCCC--CCCCCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCCCHHHHHHHHHHC
T ss_conf 355644--47786378999999854880899889699999999987997668989999989
No 42
>>2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, structural genomics, NPPSFA; 1.60A {Pyrococcus horikoshii OT3} (A:)
Probab=58.73 E-value=14 Score=18.02 Aligned_cols=149 Identities=11% Similarity=0.039 Sum_probs=73.3
Q ss_pred CCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHCCC-CH--HCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECC
Q ss_conf 00121000111100000125873023024432001320111-00--0012222200134433333311430368897004
Q gi|254780801|r 53 FAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSL-FD--VIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG 129 (222)
Q Consensus 53 fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQsNKvk~i~~~-~~--~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~ 129 (222)
||-.=++++.+... .+-..++..|-||..-.+-++..... +| .+|.--.....+.+-+.+ +. .+
T Consensus 38 ~g~~~i~~l~~~~~-~~i~~d~k~~di~~~~~~~~~~~~~~gad~~~vh~~~~~~~~~~~~~~~---~~--~~------- 104 (208)
T 2czd_A 38 SGVDIIRRLKEETG-VEIIADLKLADIPNTNRLIARKVFGAGADYVIVHTFVGRDSVMAVKELG---EI--IM------- 104 (208)
T ss_dssp HCTTHHHHHHHHHC-CEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESTTCHHHHHHHHTTS---EE--EE-------
T ss_pred CCHHHHHHHHHHCC-CEEEEEHHHHCCCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHC---CC--CE-------
T ss_conf 49789999998559-8099771321145614555443323587665442014799998644202---32--21-------
Q ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEECCCCCCCC---HHHHHHHHHHHHHCCCCE-ECCCCC-HHHHHHHHHC
Q ss_conf 66563465700012223443104311001110115433452---058999999988758947-224777-3489999808
Q gi|254780801|r 130 YEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECKLTK-LSMGMT-RDFELAIASG 204 (222)
Q Consensus 130 ~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMti~p~~~d~---~~~F~~l~~l~~~~~~~~-LSmGMS-~D~~~Ai~~G 204 (222)
..++++..-.++.+... +.+.....|++.|-..-+ ...+.+++.+........ ---|.+ ++-..+++.|
T Consensus 105 ----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~i~~~GGi~~~~~~~~~~~G 178 (208)
T 2czd_A 105 ----VVEMSHPGALEFINPLT--DRFIEVANEIEPFGVIAPGTRPERIGYIRDRLKEGIKILAPGIGAQGGKAKDAVKAG 178 (208)
T ss_dssp ----ECCCCSGGGGTTTGGGH--HHHHHHHHHHCCSEEECCCSSTHHHHHHHHHSCTTCEEEECCCCSSTTHHHHHHHHT
T ss_pred ----EEECCCCCCCCCCCHHH--HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHCC
T ss_conf ----11026676432112599--999999984244566543457226677665540466155797123689999999809
Q ss_pred CCEEEECHHHCCCCCC
Q ss_conf 9889971132389999
Q gi|254780801|r 205 ATSVRIGSGIFGERPC 220 (222)
Q Consensus 205 st~vRiGs~iFG~R~~ 220 (222)
+..|=+||+||++.+.
T Consensus 179 ad~vvvGsaI~~a~dp 194 (208)
T 2czd_A 179 ADYIIVGRAIYNAPNP 194 (208)
T ss_dssp CSEEEECHHHHTSSSH
T ss_pred CCEEEECHHHCCCCCH
T ss_conf 9999989788059999
No 43
>>1f07_A Coenzyme F420-dependent N5,N10- methylenetetrahydromethanopterin reductase; (beta, alpha)8 barrel, TIM barrel; HET: MPO; 2.00A {Methanothermobacterthermautotrophicus} (A:1-205,A:281-321)
Probab=54.56 E-value=17 Score=17.56 Aligned_cols=10 Identities=40% Similarity=0.431 Sum_probs=4.0
Q ss_pred HCCCEEEECH
Q ss_conf 0898899711
Q gi|254780801|r 203 SGATSVRIGS 212 (222)
Q Consensus 203 ~Gst~vRiGs 212 (222)
.|-|..--||
T Consensus 217 ~~~~~~~~~~ 226 (246)
T 1f07_A 217 MGVTQYVAGS 226 (246)
T ss_dssp TTCCEEEEEE
T ss_pred CCCCEEEEEC
T ss_conf 5998799928
No 44
>>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} (A:)
Probab=52.56 E-value=18 Score=17.36 Aligned_cols=66 Identities=20% Similarity=0.191 Sum_probs=44.2
Q ss_pred CCCHHHHEECCCCCCCC---HHHHHHHHHHHHHCCCCEE-CCCCCH-HHHHHHHHCCCEEEECHHHCCCCC
Q ss_conf 11001110115433452---0589999999887589472-247773-489999808988997113238999
Q gi|254780801|r 154 QLNVEGLMCIPPAMGNP---KPHFYLLSEIARECKLTKL-SMGMTR-DFELAIASGATSVRIGSGIFGERP 219 (222)
Q Consensus 154 ~L~i~GLMti~p~~~d~---~~~F~~l~~l~~~~~~~~L-SmGMS~-D~~~Ai~~Gst~vRiGs~iFG~R~ 219 (222)
+.....++.+.+-...+ ......+.........+.. .-|+|. |...+++.|++.|=+||+||+.-.
T Consensus 130 g~d~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~a~GGi~~~~i~~~~~~Gadgv~vGs~i~~~~d 200 (221)
T 1yad_A 130 DADYVLFGHVFETDCKKGLEGRGVSLLSDIKQRISIPVIAIGGMTPDRLRDVKQAGADGIAVMSGIFSSAE 200 (221)
T ss_dssp TCSEEEEECCC----------CHHHHHHHHHHHCCSCEEEESSCCGGGHHHHHHTTCSEEEESHHHHTSSS
T ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCEEEEEHHHHCCCC
T ss_conf 11241002345544443102456888878886257747864789999999999829989997399877999
No 45
>>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose phosphate pathway; 2.30A {Solanum tuberosum} (A:)
Probab=48.83 E-value=16 Score=17.63 Aligned_cols=168 Identities=12% Similarity=0.134 Sum_probs=75.0
Q ss_pred CHHHHHHHHHCCCCC--CCCC---CCH---HHHHHHHCCCCC--CCCCEEEECCCCCCHHHHHCCC-CHHCCCCC---CC
Q ss_conf 999999999729810--0012---100---011110000012--5873023024432001320111-00001222---22
Q gi|254780801|r 38 DSKKIRVALSCGQVI--FAEN---KLQ---EAKKKWIPLRKE--WDVQLRFIGSLQSNKVSEIVSL-FDVIETVS---RE 103 (222)
Q Consensus 38 ~~e~I~~~~~~G~~~--fGEN---rvQ---E~~~K~~~l~~~--~~i~wHfIG~LQsNKvk~i~~~-~~~Ihsvd---s~ 103 (222)
..+.++.+.+.|.+. ++.. ..+ +..+........ .....|.+-...-+-++.+... +|.||... ..
T Consensus 25 ~~~~~~~~~~~G~~~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~agad~v~i~~~~~~~ 104 (230)
T 1rpx_A 25 LGEQVKAIEQAGCDWIHVDVMDGRFVPNITIGPLVVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSST 104 (230)
T ss_dssp HHHHHHHHHHTTCCCEEEEEEBSSSSSCBCCCHHHHHHHGGGCCSCEEEEEESSSHHHHHHHHHHTTCSEEEEECSTTTC
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEEEEHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 99999999975998899978779717765638689999864247635578776305667788874377136762333454
Q ss_pred CHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEECCCCCC-----C-CHHHHHHH
Q ss_conf 00134433333311430368897004665634657000122234431043110011101154334-----5-20589999
Q gi|254780801|r 104 KTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG-----N-PKPHFYLL 177 (222)
Q Consensus 104 ~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMti~p~~~-----d-~~~~F~~l 177 (222)
.....+-+.+.+.+ .++.+.++....+.. ...... .....+++...+... . .-.....+
T Consensus 105 ~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (230)
T 1rpx_A 105 IHLHRTINQIKSLG--AKAGVVLNPGTPLTA-----------IEYVLD--AVDLVLIMSVNPGFGGQSFIESQVKKISDL 169 (230)
T ss_dssp SCHHHHHHHHHHTT--SEEEEEECTTCCGGG-----------GTTTTT--TCSEEEEESSCTTCSSCCCCTTHHHHHHHH
T ss_pred CCHHHHHHHHHHCC--CEEEEEECCCCCHHH-----------HHHHHH--HCCEEEEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf 05999999999769--859999579998799-----------999996--579899987369976321002455667776
Q ss_pred HHHHH--HCCCCE-ECCCC-CHHHHHHHHHCCCEEEECHHHCCCCCC
Q ss_conf 99988--758947-22477-734899998089889971132389999
Q gi|254780801|r 178 SEIAR--ECKLTK-LSMGM-TRDFELAIASGATSVRIGSGIFGERPC 220 (222)
Q Consensus 178 ~~l~~--~~~~~~-LSmGM-S~D~~~Ai~~Gst~vRiGs~iFG~R~~ 220 (222)
+.... ...... ..-|- ++|-..+++.|+..|=+||+||+..+.
T Consensus 170 ~~~~~~~~~~~~i~~~Gg~~~~~~~~~~~~GadgvvvGsaI~~~~dp 216 (230)
T 1rpx_A 170 RKICAERGLNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAPDY 216 (230)
T ss_dssp HHHHHHHTCCCEEEEESSCCTTTHHHHHHHTCCEEEESHHHHTSSCH
T ss_pred HHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCH
T ss_conf 55666437724899988868999999998699999978798689999
No 46
>>3gdm_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, K93R mutant, lyase, phosphoprotein; 1.60A {Saccharomyces cerevisiae} PDB: 3gdl_A* 3gdk_A* 3gdt_A* 3gdr_A* 1dqw_A 1dqx_A* (A:)
Probab=48.72 E-value=15 Score=17.92 Aligned_cols=187 Identities=10% Similarity=-0.035 Sum_probs=81.2
Q ss_pred HHCEEEEECCCCCHHHHHHHHHCCC------------CCCCCCCCHHHHHHHHCCCC---CCCCCEEEECCCCCCHHHHH
Q ss_conf 4418998718999999999997298------------10001210001111000001---25873023024432001320
Q gi|254780801|r 26 DSVSLVAVSKMVDSKKIRVALSCGQ------------VIFAENKLQEAKKKWIPLRK---EWDVQLRFIGSLQSNKVSEI 90 (222)
Q Consensus 26 ~~v~LiaVtK~~~~e~I~~~~~~G~------------~~fGENrvQE~~~K~~~l~~---~~~i~wHfIG~LQsNKvk~i 90 (222)
.++-+++.-.....+.++.+-.++. ..||-.-++++.+-.....+ -.|.+.+-||..=+.-++.+
T Consensus 29 ~s~li~alD~~~~~~~~~~i~~~~~~v~~~k~~~~~~~~~G~~~i~~l~~~~~~~~d~~ii~D~k~~DIg~t~~~~~~~~ 108 (267)
T 3gdm_A 29 QTNLCASLDVRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALSAKYNFLLFEDRRFADIGNTVKLQYSAG 108 (267)
T ss_dssp TCCEEEECCCSCHHHHHHHHHHHGGGCSEEEECGGGCSSCCTTTTHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHHHST
T ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEECHHHHHHCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCHHHHHHHHHH
T ss_conf 78889996379999999999983883169998889975348899999999998745946864643058767899999999
Q ss_pred CCC----CHH--CCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEECC
Q ss_conf 111----000--01222220013443333331143036889700466563465700012223443104311001110115
Q gi|254780801|r 91 VSL----FDV--IETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP 164 (222)
Q Consensus 91 ~~~----~~~--Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMti~ 164 (222)
... +|+ ||.--.....+.+-+.+.+.+...-+.+...+..+ ..=....++...+.... .++.. |.=..+
T Consensus 109 ~~~~~~gaD~itvh~~~g~~~l~~~~~~~~~~~~~~~~~l~~ts~~~--~~~~~~~~~~~~~~~~~-~~g~~--g~~~~~ 183 (267)
T 3gdm_A 109 VYRIAEWADITNAHGVVGPGIVSGLKQAAEEVTKEPRGLLMLAELSC--KGSLATGEYTKGTVDIA-KSDKD--FVIGFI 183 (267)
T ss_dssp TTCHHHHCSEEEEEGGGCTHHHHHHHHHHHHHCCSCCEEEEECSCCS--TTCCCCHHHHHHHHHHH-TTCTT--TEEEEE
T ss_pred HHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCC--CHHHHHHHHHHHHHHHH-HHCCC--CEEEEC
T ss_conf 98763466089841655035799999998633887643689843561--10223356778999999-84778--678843
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEECCCCCH-------HHHHHHHHCCCEEEECHHHCCC-CCC
Q ss_conf 4334520589999999887589472247773-------4899998089889971132389-999
Q gi|254780801|r 165 PAMGNPKPHFYLLSEIARECKLTKLSMGMTR-------DFELAIASGATSVRIGSGIFGE-RPC 220 (222)
Q Consensus 165 p~~~d~~~~F~~l~~l~~~~~~~~LSmGMS~-------D~~~Ai~~Gst~vRiGs~iFG~-R~~ 220 (222)
...+-.+........ -+....+.-|-+- ....+++.|+++|=+||+||++ +++
T Consensus 184 ~~~~~i~~~~~~~~~---~~~~g~~~~~i~vdGgi~~~t~~~~~~~Gad~ivvGraI~~a~~d~ 244 (267)
T 3gdm_A 184 AQRDMGGRDEGYDWL---IMTPGVGLDDKGDALGQQYRTVDDVVSTGSDIIIVGRGLFAKGRDA 244 (267)
T ss_dssp CSSCCCCGGGTCCCE---EEECSEECCCTTCTTGGGSEEHHHHHHTTCSEEEECGGGTSTTCCH
T ss_pred CHHHHHHHHCCCCEE---EECCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCH
T ss_conf 368887765187607---8546766688888999535699999987999999897225788899
No 47
>>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid, csgid, Mg-bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} PDB: 3ieb_A* (A:)
Probab=47.42 E-value=10 Score=18.90 Aligned_cols=47 Identities=11% Similarity=0.060 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHCCCCE-ECCCC-CHHHHHHHHHCCCEEEECHHHCCC
Q ss_conf 058999999988758947-22477-734899998089889971132389
Q gi|254780801|r 171 KPHFYLLSEIARECKLTK-LSMGM-TRDFELAIASGATSVRIGSGIFGE 217 (222)
Q Consensus 171 ~~~F~~l~~l~~~~~~~~-LSmGM-S~D~~~Ai~~Gst~vRiGs~iFG~ 217 (222)
.+.+..+........... .--|. ..+-..|++.|+..|=+||+||+.
T Consensus 152 ~~~~~~~~~~~~~~~~pv~~~gGi~~~~~~~a~~~GAd~vvvGsaI~~a 200 (218)
T 3jr2_A 152 TTDDLDKXRQLSALGIELSITGGIVPEDIYLFEGIKTKTFIAGRALAGA 200 (218)
T ss_dssp CHHHHHHHHHHHHTTCEEEEESSCCGGGGGGGTTSCEEEEEESGGGSHH
T ss_pred CHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHCCCCEEEECCHHCCC
T ss_conf 8999999999752595488648878688999998598999989054289
No 48
>>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} PDB: 3exs_A* 3ext_A (A:)
Probab=47.27 E-value=11 Score=18.69 Aligned_cols=48 Identities=13% Similarity=0.079 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHCCCCE-ECCCCC-HHHHHHHHHCCCEEEECHHHCCCCC
Q ss_conf 58999999988758947-224777-3489999808988997113238999
Q gi|254780801|r 172 PHFYLLSEIARECKLTK-LSMGMT-RDFELAIASGATSVRIGSGIFGERP 219 (222)
Q Consensus 172 ~~F~~l~~l~~~~~~~~-LSmGMS-~D~~~Ai~~Gst~vRiGs~iFG~R~ 219 (222)
+................ .-.|++ .+...+++.|+..|=|||+||+..+
T Consensus 155 ~~~~~~~~~~~~~~~~i~~~Gg~~~~~~~~~~~~Gad~vvvG~aI~~a~d 204 (221)
T 3exr_A 155 EKDLNKVKKLIEMGFRVSVTGGLSVDTLKLFEGVDVFTFIAGRGITEAKN 204 (221)
T ss_dssp HHHHHHHHHHHHHTCEEEEESSCCGGGGGGGTTCCCSEEEECHHHHTSSS
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHCCCCEEEECHHHHCCCC
T ss_conf 89999999863569608756985814799999869999998826607999
No 49
>>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} (A:1-333)
Probab=45.98 E-value=22 Score=16.69 Aligned_cols=113 Identities=7% Similarity=-0.013 Sum_probs=68.0
Q ss_pred CCHHHHHH-HHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHC--CCCCCHHHHEECCC-----CCCCCHHHH
Q ss_conf 20013443-33333114303688970046656346570001222344310--43110011101154-----334520589
Q gi|254780801|r 103 EKTASLLS-LEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ--KYQLNVEGLMCIPP-----AMGNPKPHF 174 (222)
Q Consensus 103 ~~~a~~L~-~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~--~~~L~i~GLMti~p-----~~~d~~~~F 174 (222)
..++.++- ......+....|-+-++.. |..+.|..+++..+++..+.+ ...|.+.+-..-.+ ....+....
T Consensus 191 ~r~~~eii~air~~~g~~~~v~~Rl~~~-~~~~~~~~~~~~~~~~~~l~~~g~d~l~v~~~~~~~~~~~~~~~~~~~~~~ 269 (333)
T 1ps9_A 191 MRFAVEVVRAVRERVGNDFIIIYRLSML-DLVEDGGTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFS 269 (333)
T ss_dssp HHHHHHHHHHHHHHHCSSSEEEEEEEEE-CCSTTCCCHHHHHHHHHHHHHHTCSEEEEEECBTTCSSCSSSTTSCTTTTH
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCC-CCCCCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 8999999998986629973588843651-125689988999999999998287303022354345676556776511669
Q ss_pred HHHHHHHHHCCCCEECCCCC---HHHHHHHHHC-CCEEEECHHHCC
Q ss_conf 99999988758947224777---3489999808-988997113238
Q gi|254780801|r 175 YLLSEIARECKLTKLSMGMT---RDFELAIASG-ATSVRIGSGIFG 216 (222)
Q Consensus 175 ~~l~~l~~~~~~~~LSmGMS---~D~~~Ai~~G-st~vRiGs~iFG 216 (222)
...+.+++....+.+.-|.= .|++.++++| .++|=+|+.+.-
T Consensus 270 ~~~~~~~~~~~~pvi~~G~i~~~~~a~~~l~~g~~D~V~igR~~la 315 (333)
T 1ps9_A 270 WVTRKLKGHVSLPLVTTNRINDPQVADDILSRGDADMVSMARPFLA 315 (333)
T ss_dssp HHHHHHTTSCSSCEEECSSCCSHHHHHHHHHTTSCSEEEESTHHHH
T ss_pred HHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCEEHHHHHHHH
T ss_conf 9999997415777898379777999999998799876411359870
No 50
>>1p80_A Catalase HPII; beta barrel, channel, variant, oxidoreductase; HET: HEM; 1.65A {Escherichia coli} (A:125-581)
Probab=44.61 E-value=18 Score=17.28 Aligned_cols=63 Identities=8% Similarity=-0.152 Sum_probs=40.4
Q ss_pred CHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEECCCCCC
Q ss_conf 00134433333311430368897004665634657000122234431043110011101154334
Q gi|254780801|r 104 KTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG 168 (222)
Q Consensus 104 ~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMti~p~~~ 168 (222)
-+...+..+.......-.++||+-..++..+..+.+++.-..+.+- ..|-+. .|-|+|.....
T Consensus 194 ~l~d~~~~~~~~~~~~~~l~iQ~~~~~d~~~~~~~i~D~Tk~Wpe~-~~P~~~-vg~l~l~~~~~ 256 (457)
T 1p80_A 194 HRRELWEAIEAGDFPEYELGFQLIPEEDEFKFDFDLLDPTKLIPEE-LVPVQR-VGKMVLNRNPD 256 (457)
T ss_dssp HHHHHHHHHHHTCCCEEEEEEEEEEGGGTTCSSSCTTCTTCCCCTT-TSCEEE-EEEEEEEECCS
T ss_pred HHHHHHHHHHCCCCCEEEEEEEEECHHHHHCCCCCCCCCCEECCCC-CCCEEE-EEEEEEECCCC
T ss_conf 8999999997599980799999605324630798867786557765-673387-37999705887
No 51
>>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* (A:)
Probab=44.53 E-value=23 Score=16.54 Aligned_cols=36 Identities=17% Similarity=0.324 Sum_probs=27.6
Q ss_pred CCCE-ECCCCCH-HHHHHHHHCCCEEEECHHHCCCCCC
Q ss_conf 8947-2247773-4899998089889971132389999
Q gi|254780801|r 185 KLTK-LSMGMTR-DFELAIASGATSVRIGSGIFGERPC 220 (222)
Q Consensus 185 ~~~~-LSmGMS~-D~~~Ai~~Gst~vRiGs~iFG~R~~ 220 (222)
+.+. .+-|++. |...+++.|+..|=+||+||+.-..
T Consensus 148 ~i~i~a~GGi~~~~i~~~l~~Gad~v~vgsai~~~~d~ 185 (212)
T 2v82_A 148 DIAVFAVGGVTPENLAQWIDAGCAGAGLGSDLYRAGQS 185 (212)
T ss_dssp TCEEEEESSCCTTTHHHHHHHTCSEEEECTTTCCTTCC
T ss_pred CCEEEEECCCCHHHHHHHHHCCCEEEEECHHHCCCCCC
T ss_conf 87797347988888999998698799973897389986
No 52
>>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, structural genomics, center for structural genomics of infectious diseases; 2.05A {Francisella tularensis subsp} (A:)
Probab=43.42 E-value=20 Score=16.94 Aligned_cols=30 Identities=17% Similarity=0.172 Sum_probs=25.4
Q ss_pred CCCCCHHHHHHHHHCCCEEEECHHHCCCCC
Q ss_conf 247773489999808988997113238999
Q gi|254780801|r 190 SMGMTRDFELAIASGATSVRIGSGIFGERP 219 (222)
Q Consensus 190 SmGMS~D~~~Ai~~Gst~vRiGs~iFG~R~ 219 (222)
-.-...|-..|++.|+.-|=+||+||+..+
T Consensus 202 GGi~~~~~~~~~~~Gad~VvvGsaI~~a~d 231 (246)
T 3inp_A 202 GGVNPYNIAEIAVCGVNAFVAGSAIFNSDS 231 (246)
T ss_dssp SSCCTTTHHHHHTTTCCEEEESHHHHTSSC
T ss_pred CCCCHHHHHHHHHCCCCEEEECHHHHCCCC
T ss_conf 867899999999879999998968878999
No 53
>>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} (A:)
Probab=41.67 E-value=16 Score=17.62 Aligned_cols=172 Identities=9% Similarity=0.031 Sum_probs=74.9
Q ss_pred HHCEEEEECCCCC----HHHHHHHHHCCCCCCCCC--CCHHHHHHHHCCCCCCCCCEEEEC-CCCCCHHHHHCCC-CHHC
Q ss_conf 4418998718999----999999997298100012--100011110000012587302302-4432001320111-0000
Q gi|254780801|r 26 DSVSLVAVSKMVD----SKKIRVALSCGQVIFAEN--KLQEAKKKWIPLRKEWDVQLRFIG-SLQSNKVSEIVSL-FDVI 97 (222)
Q Consensus 26 ~~v~LiaVtK~~~----~e~I~~~~~~G~~~fGEN--rvQE~~~K~~~l~~~~~i~wHfIG-~LQsNKvk~i~~~-~~~I 97 (222)
....|++++=..+ .+.++.+.+.|.+.+=-+ ..+. .+-...+.+..++...+-+ .+-...+..+... .++|
T Consensus 11 ~~~~l~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i 89 (217)
T 3lab_A 11 NTKPLIPVIVIDDLVHAIPXAKALVAGGVHLLEVTLRTEAG-LAAISAIKKAVPEAIVGAGTVCTADDFQKAIDAGAQFI 89 (217)
T ss_dssp TSCSEEEEECCSCGGGHHHHHHHHHHTTCCEEEEETTSTTH-HHHHHHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSEE
T ss_pred HCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHH-HHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCEE
T ss_conf 37988999978999999999999998799889996899049-99999999868997398997243689999997489999
Q ss_pred CCCCC-CCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEECCCCCCCCHHHHHH
Q ss_conf 12222-20013443333331143036889700466563465700012223443104311001110115433452058999
Q gi|254780801|r 98 ETVSR-EKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176 (222)
Q Consensus 98 hsvds-~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMti~p~~~d~~~~F~~ 176 (222)
+.+.. ....+.+...........-.+.-++ ++++..... ..-..++...++...........
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~e~~~a~-------~~g~~~~~~~~~~~~~~~~~~~~ 152 (217)
T 3lab_A 90 VSPGLTPELIEKAKQVKLDGQWQGVFLPGVA----------TASEVXIAA-------QAGITQLKCFPASAIGGAKLLKA 152 (217)
T ss_dssp EESSCCHHHHHHHHHHHHHCSCCCEEEEEEC----------SHHHHHHHH-------HTTCCEEEETTTTTTTHHHHHHH
T ss_pred ECCCCCHHHHHHHHHCCCCCCCCCCCCCCCC----------CHHHHHHHH-------HCCCCEEEECCHHHCCCHHHHHH
T ss_conf 9899999999999983998433554537859----------889999999-------87999799650431378999999
Q ss_pred HHHHHHHCCCCE-ECCCCC-HHHHHHHHHCCCEEEECHHHCCC
Q ss_conf 999988758947-224777-34899998089889971132389
Q gi|254780801|r 177 LSEIARECKLTK-LSMGMT-RDFELAIASGATSVRIGSGIFGE 217 (222)
Q Consensus 177 l~~l~~~~~~~~-LSmGMS-~D~~~Ai~~Gst~vRiGs~iFG~ 217 (222)
.. ......+. -.-|.+ +|...+++.|++.|=+||+||++
T Consensus 153 ~~--~~~~~ipi~a~GGI~~~~v~~~~~~Gad~v~vGsai~~~ 193 (217)
T 3lab_A 153 WS--GPFPDIQFCPTGGISKDNYKEYLGLPNVICAGGSWLTES 193 (217)
T ss_dssp HH--TTCTTCEEEEBSSCCTTTHHHHHHSTTBCCEEESGGGCH
T ss_pred HH--CCCCCCEEEEECCCCHHHHHHHHHCCCEEEEECCHHCCH
T ss_conf 74--579998388537999899999996898299988310696
No 54
>>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482} (A:)
Probab=41.06 E-value=26 Score=16.19 Aligned_cols=68 Identities=7% Similarity=-0.096 Sum_probs=45.0
Q ss_pred CCCCCHHHHEECCCCCCCCHH------HHHHHHHHHHHCCCCE-ECCCCCH-HHHHHHHHCCCEEEECHHHCCCCC
Q ss_conf 431100111011543345205------8999999988758947-2247773-489999808988997113238999
Q gi|254780801|r 152 KYQLNVEGLMCIPPAMGNPKP------HFYLLSEIARECKLTK-LSMGMTR-DFELAIASGATSVRIGSGIFGERP 219 (222)
Q Consensus 152 ~~~L~i~GLMti~p~~~d~~~------~F~~l~~l~~~~~~~~-LSmGMS~-D~~~Ai~~Gst~vRiGs~iFG~R~ 219 (222)
...+...++|.+.|....+.+ ....+.......+.+. -+=|++. +....++.|++.|=+||+||++..
T Consensus 105 ~~~~d~v~~~~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~i~i~a~GGI~~~ni~~~~~aGa~~v~vgs~i~~~~d 180 (210)
T 3ceu_A 105 KHFYDYVFXSPIYDSISKVNYYSTYTAEELREAQKAKIIDSKVXALGGINEDNLLEIKDFGFGGAVVLGDLWNKFD 180 (210)
T ss_dssp GGGSSEEEECCCC---------CCCCHHHHHHHHHTTCSSTTEEEESSCCTTTHHHHHHTTCSEEEESHHHHTTCC
T ss_pred HHCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHCCCCEEEEEHHHHCCCC
T ss_conf 7099989975775578775444457989999999862579977973588999999999839988998699976998
No 55
>>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta- barrel, lyase; 2.20A {Pseudomonas putida} (A:)
Probab=40.98 E-value=15 Score=17.79 Aligned_cols=38 Identities=5% Similarity=-0.073 Sum_probs=28.4
Q ss_pred HHHCCCCEECC-CCC-HHHHHHHHHCCCEEEECHHHCCCC
Q ss_conf 88758947224-777-348999980898899711323899
Q gi|254780801|r 181 ARECKLTKLSM-GMT-RDFELAIASGATSVRIGSGIFGER 218 (222)
Q Consensus 181 ~~~~~~~~LSm-GMS-~D~~~Ai~~Gst~vRiGs~iFG~R 218 (222)
....+++.... |+| +|...+++.|+..|=+||+||+.-
T Consensus 162 ~~~~~ipi~a~GGi~~~~~~~~~~aGAd~v~vgsai~~~~ 201 (225)
T 1mxs_A 162 GPFGDIRFCPTGGVNPANVRNYMALPNVMCVGTTWMLDSS 201 (225)
T ss_dssp TTTTTCEEEEBSSCCTTTHHHHHHSTTBCCEEECTTSCHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHCCCEEEEECCCCCCHH
T ss_conf 3034680663479898999999847884999765448988
No 56
>>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} (D:)
Probab=40.93 E-value=24 Score=16.51 Aligned_cols=47 Identities=15% Similarity=0.063 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHCCCCEECCC---CCHHHHHHHHHCCCEEEECHHHCCC
Q ss_conf 0589999999887589472247---7734899998089889971132389
Q gi|254780801|r 171 KPHFYLLSEIARECKLTKLSMG---MTRDFELAIASGATSVRIGSGIFGE 217 (222)
Q Consensus 171 ~~~F~~l~~l~~~~~~~~LSmG---MS~D~~~Ai~~Gst~vRiGs~iFG~ 217 (222)
.......+.+++....+..-.| -..|...|++.|++-|=|||++++.
T Consensus 181 ~~~~~~i~~ia~~~~~pvi~~GGI~s~~di~~~l~~GAd~V~VGsa~~~~ 230 (253)
T 1thf_D 181 GYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFR 230 (253)
T ss_dssp CCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCC
T ss_conf 75411110102454671898448899999999997799899981386769
No 57
>>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} (A:)
Probab=40.27 E-value=27 Score=16.11 Aligned_cols=172 Identities=9% Similarity=0.000 Sum_probs=72.1
Q ss_pred CHHHHHHHHHCCCCCC--CCC---CCHHH---HHHHHCCCCC--CCCCEEEECCCCCCHHHHHCCC-CHHCCCCC---CC
Q ss_conf 9999999997298100--012---10001---1110000012--5873023024432001320111-00001222---22
Q gi|254780801|r 38 DSKKIRVALSCGQVIF--AEN---KLQEA---KKKWIPLRKE--WDVQLRFIGSLQSNKVSEIVSL-FDVIETVS---RE 103 (222)
Q Consensus 38 ~~e~I~~~~~~G~~~f--GEN---rvQE~---~~K~~~l~~~--~~i~wHfIG~LQsNKvk~i~~~-~~~Ihsvd---s~ 103 (222)
+.+.++.+.+.|.+.+ +.. +.+.. .......... ..+.+|-+...-.+-+..+... +|.||-.+ ..
T Consensus 19 ~~e~~~~~~~~G~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~Gad~v~i~~~~~~~ 98 (230)
T 1tqj_A 19 LGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNAS 98 (230)
T ss_dssp HHHHHHHHHHTTCSEEEEEEEBSSSSSCBCBCHHHHHHHGGGCCSEEEEEEESSSGGGTHHHHHHHTCSEEEEECSTTTC
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEEECHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 99999999975999899967789646654648232200100366514105788477787677642255189984144566
Q ss_pred CHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHH--HHEECCCCCCCCHHHHHHHHHHH
Q ss_conf 0013443333331143036889700466563465700012223443104311001--11011543345205899999998
Q gi|254780801|r 104 KTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE--GLMCIPPAMGNPKPHFYLLSEIA 181 (222)
Q Consensus 104 ~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~--GLMti~p~~~d~~~~F~~l~~l~ 181 (222)
.....+.+.+.+.+ ..+.+-++...++ +.+..+....... .+... +..+.......+...........
T Consensus 99 ~~~~~~~~~~~~~g--~~~~~~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (230)
T 1tqj_A 99 PHLHRTLCQIRELG--KKAGAVLNPSTPL-------DFLEYVLPVCDLI-LIMSVNPGFGGQSFIPEVLPKIRALRQMCD 168 (230)
T ss_dssp TTHHHHHHHHHHTT--CEEEEEECTTCCG-------GGGTTTGGGCSEE-EEESSCC----CCCCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCC--CCEEEEECCCCCH-------HHHHHHHHHCCEE-EEEEECCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 37789999999769--8279997799965-------7899986301289-999864787885321001678898888753
Q ss_pred HHC-CCCE-ECCCC-CHHHHHHHHHCCCEEEECHHHCCCCC
Q ss_conf 875-8947-22477-73489999808988997113238999
Q gi|254780801|r 182 REC-KLTK-LSMGM-TRDFELAIASGATSVRIGSGIFGERP 219 (222)
Q Consensus 182 ~~~-~~~~-LSmGM-S~D~~~Ai~~Gst~vRiGs~iFG~R~ 219 (222)
... .... .+-|- .+|..-+++.|++.|=+||+|+++-+
T Consensus 169 ~~~~~~~v~~~GGi~~~~~~~~~~~GAdgvvvGsaI~~a~d 209 (230)
T 1tqj_A 169 ERGLDPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVFNAPN 209 (230)
T ss_dssp HHTCCCEEEEESSCCTTTTHHHHHHTCCEEEESHHHHTSSC
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCC
T ss_conf 14788249998388988899999879999997858838999
No 58
>>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} (A:)
Probab=40.13 E-value=12 Score=18.59 Aligned_cols=120 Identities=11% Similarity=0.078 Sum_probs=68.1
Q ss_pred CHHCC-CCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCC--CCCCCCHHHHHHHHHHCCCCCCHHHHEECCC-----
Q ss_conf 00001-222220013443333331143036889700466563--4657000122234431043110011101154-----
Q gi|254780801|r 94 FDVIE-TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQK--SGIMPNQTKDFVILCRQKYQLNVEGLMCIPP----- 165 (222)
Q Consensus 94 ~~~Ih-svds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K--~G~~p~el~~l~~~i~~~~~L~i~GLMti~p----- 165 (222)
|+.|. +-+.+.+-+-+.++..+.-....+.++.-++.-... ......+..+..+.+.+ ..+..||..++
T Consensus 99 f~sVmiD~S~l~~~enit~~~v~~a~~~g~~vE~ElG~~~g~e~~~~~~t~~~~a~~f~~~---tg~d~l~i~A~~~Gt~ 175 (251)
T 1qwg_A 99 FEAVEISDGSSDISLEERNNAIKRAKDNGFMVLTEVGKKMPDKDKQLTIDDRIKLINFDLD---AGADYVIIEGRESGKG 175 (251)
T ss_dssp CCEEEECCSSSCCCHHHHHHHHHHHHHTTCEEEEEECCSSHHHHTTCCHHHHHHHHHHHHH---HTCSEEEECCTTTCCS
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEHHHCCCC
T ss_conf 9889975985678989999999999858998951455788886655599999999999996---6885899840211776
Q ss_pred ---CCCCCHHHHHHHHHHHHHCCCCEECCCCCH--HHHHHHHHCCCEEEECHHHCC
Q ss_conf ---334520589999999887589472247773--489999808988997113238
Q gi|254780801|r 166 ---AMGNPKPHFYLLSEIARECKLTKLSMGMTR--DFELAIASGATSVRIGSGIFG 216 (222)
Q Consensus 166 ---~~~d~~~~F~~l~~l~~~~~~~~LSmGMS~--D~~~Ai~~Gst~vRiGs~iFG 216 (222)
+...++-.|..++++.+.+..+-.--|-|+ ++..+|++|-+-|-++|.+|-
T Consensus 176 HG~y~~~~~l~~~~l~~I~~~~~~plVlHGaSg~~~~~~~i~~g~~KvNi~t~~~~ 231 (251)
T 1qwg_A 176 KGLFDKEGKVKENELDVLAKNVDINKVIFEAPQKSQQVAFILKFGSSVNLANIAFD 231 (251)
T ss_dssp STTBCTTSCBCHHHHHHHHTTSCGGGEEEECCSHHHHHHHHHHHCTTCCEEEEEGG
T ss_pred CCEECCCCCHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHCCCCCCCCCCHH
T ss_conf 12246887701889999998489202799789856899999997989652367999
No 59
>>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus stearothermophilus} (A:1-71,A:168-339)
Probab=39.33 E-value=28 Score=16.01 Aligned_cols=56 Identities=18% Similarity=0.142 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHCEEEEECCC-------CCHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 99999999999999981989644189987189-------999999999972981000121000111
Q gi|254780801|r 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKM-------VDSKKIRVALSCGQVIFAENKLQEAKK 63 (222)
Q Consensus 5 ~nl~~i~~~I~~a~~~~gR~~~~v~LiaVtK~-------~~~e~I~~~~~~G~~~fGENrvQE~~~ 63 (222)
+......++|+++.++.||. |.+++-+|+ +..++|..+.++|++-++-++|+.+.+
T Consensus 42 e~h~~~i~~iR~~~~~~~~~---i~Il~Dl~GPlp~LTekD~~di~~a~~~~vD~ialSfVr~a~d 104 (243)
T 2e28_A 42 EEHGRRIANIREAAKRTGRT---VAILLDTKGPLPGITEKDRADILFGIRQGIDFIAASFVRRASD 104 (243)
T ss_dssp HHHHHHHHHHHHHHHHTTCC---CEEEEECCCCCCSCCHHHHHHHHHHHHHTCSEEEESSCCSHHH
T ss_pred HHHHHHHHHHHHHHHHCCCC---CEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHH
T ss_conf 99999999999999971998---0799968998622215679998877650888675135487335
No 60
>>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} (A:)
Probab=39.32 E-value=22 Score=16.70 Aligned_cols=173 Identities=12% Similarity=0.097 Sum_probs=81.2
Q ss_pred HHCEEEEECC--C-CCHHHHHHHHHCCCCCC--CCCCCHH--HHHHHHCCCCC-CCCCEEEECCCCCCHHHHHCCCCHHC
Q ss_conf 4418998718--9-99999999997298100--0121000--11110000012-58730230244320013201110000
Q gi|254780801|r 26 DSVSLVAVSK--M-VDSKKIRVALSCGQVIF--AENKLQE--AKKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVI 97 (222)
Q Consensus 26 ~~v~LiaVtK--~-~~~e~I~~~~~~G~~~f--GENrvQE--~~~K~~~l~~~-~~i~wHfIG~LQsNKvk~i~~~~~~I 97 (222)
....|.+++= + ...+.++.+.+.|...+ +.+.... ........... .+..-.++.+-|-.-+..+ .+|.|
T Consensus 13 ~~~~l~~i~~~~~~~~~~~~~~~~~~G~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--gad~i 90 (215)
T 1xi3_A 13 NKLKLYVITDRRLKPEVESVREALEGGATAIQMRIKNAPTREMYEIGKTLRQLTREYDALFFVDDRVDVALAV--DADGV 90 (215)
T ss_dssp HHTSEEEECCTTTSCHHHHHHHHHHTTCSEEEECCCSCCHHHHHHHHHHHHHHHHHTTCEEEEESCHHHHHHH--TCSEE
T ss_pred HCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHC--CCCEE
T ss_conf 6876999908852778999999998799899982799999999999999998776219379953279998750--57878
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEECCCCCCC---CHHHH
Q ss_conf 122222001344333333114303688970046656346570001222344310431100111011543345---20589
Q gi|254780801|r 98 ETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHF 174 (222)
Q Consensus 98 hsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMti~p~~~d---~~~~F 174 (222)
|........... .+.+..+.+.+.+++ |+++...+.. +.....++...+-... .-...
T Consensus 91 ~~~~~~~~~~~~----~~~~~~~~~~~~~~t----------~~e~~~a~~~-----g~d~i~~~~~~~t~~~~~~~~~~~ 151 (215)
T 1xi3_A 91 QLGPEDMPIEVA----KEIAPNLIIGASVYS----------LEEALEAEKK-----GADYLGAGSVFPTKTKEDARVIGL 151 (215)
T ss_dssp EECTTSCCHHHH----HHHCTTSEEEEEESS----------HHHHHHHHHH-----TCSEEEEECSSCC----CCCCCHH
T ss_pred EECHHHHHHHHH----HHCCCCCCCCCCCCC----------HHHHHHHHHC-----CCCEEEEECCCCCCCCCCCCCCCH
T ss_conf 753013335554----312654221345450----------9999988745-----977898601322566555532226
Q ss_pred HHHHHHHHHCCCCE-ECCCC-CHHHHHHHHHCCCEEEECHHHCCCCC
Q ss_conf 99999988758947-22477-73489999808988997113238999
Q gi|254780801|r 175 YLLSEIARECKLTK-LSMGM-TRDFELAIASGATSVRIGSGIFGERP 219 (222)
Q Consensus 175 ~~l~~l~~~~~~~~-LSmGM-S~D~~~Ai~~Gst~vRiGs~iFG~R~ 219 (222)
..++......+.+. ..-|. ++|...+++.|+.-|=|||+||+.-.
T Consensus 152 ~~~~~~~~~~~ipi~~~GGi~~~~i~~~~~~GadgV~vGsai~~~~d 198 (215)
T 1xi3_A 152 EGLRKIVESVKIPVVAIGGINKDNAREVLKTGVDGIAVISAVMGAED 198 (215)
T ss_dssp HHHHHHHHHCSSCEEEESSCCTTTHHHHHTTTCSEEEESHHHHTSSS
T ss_pred HHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCCEEEEHHHHHCCCC
T ss_conf 88888887257881676689999999999819989997399777999
No 61
>>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} (A:)
Probab=38.64 E-value=25 Score=16.38 Aligned_cols=30 Identities=20% Similarity=0.334 Sum_probs=25.5
Q ss_pred ECCCCC-HHHHHHHHHCCCEEEECHHHCCCC
Q ss_conf 224777-348999980898899711323899
Q gi|254780801|r 189 LSMGMT-RDFELAIASGATSVRIGSGIFGER 218 (222)
Q Consensus 189 LSmGMS-~D~~~Ai~~Gst~vRiGs~iFG~R 218 (222)
.+-|-+ .|...++++|++-|=+||+||..=
T Consensus 175 ~~GGi~~~d~~~~~~~Gadgv~vGsai~~~~ 205 (220)
T 2fli_A 175 VDGGVDNKTIRACYEAGANVFVAGSYLFKAS 205 (220)
T ss_dssp EESSCCTTTHHHHHHHTCCEEEESHHHHTSS
T ss_pred ECCCCCHHHHHHHHHCCCCEEEECHHHHCCC
T ss_conf 8686798899999987999999775873799
No 62
>>1vqt_A Orotidine 5'-phosphate decarboxylase; TM0332, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Thermotoga maritima} (A:)
Probab=37.80 E-value=16 Score=17.74 Aligned_cols=172 Identities=9% Similarity=-0.125 Sum_probs=86.1
Q ss_pred HCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCC-----CCCCEEEECCCCCCHHHHHCCC-CHHC--C
Q ss_conf 418998718999999999997298100012100011110000012-----5873023024432001320111-0000--1
Q gi|254780801|r 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE-----WDVQLRFIGSLQSNKVSEIVSL-FDVI--E 98 (222)
Q Consensus 27 ~v~LiaVtK~~~~e~I~~~~~~G~~~fGENrvQE~~~K~~~l~~~-----~~i~wHfIG~LQsNKvk~i~~~-~~~I--h 98 (222)
...+++--...-.+.++.+-..+...+|---..+..+-...+.+. .++..|-|+..-..=++.+... +|+| |
T Consensus 13 ~~~i~alD~~~l~~~i~~~~~~~~~~i~~~~~~~G~~~i~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~gad~itvh 92 (213)
T 1vqt_A 13 MTPVLSLDMEDPIRFIDENGSFEVVKVGHNLAIHGKKIFDELAKRNLKIILDLKFCDIPSTVERSIKSWDHPAIIGFTVH 92 (213)
T ss_dssp CEEEEECCSSSHHHHHHHHCCCSEEEECHHHHTTCTHHHHHHHTTTCEEEEEEEECSCHHHHHHHHHHHCCTTEEEEEEE
T ss_pred CCEEEECCCHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHCCCCEEEEHHHCCCHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 43589767454999999759989899898998512999999997799189574335705999999998853466389984
Q ss_pred CCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEECCCCCCCCHHHHHHHH
Q ss_conf 22222001344333333114303688970046656346570001222344310431100111011543345205899999
Q gi|254780801|r 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178 (222)
Q Consensus 99 svds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMti~p~~~d~~~~F~~l~ 178 (222)
.--....++.+...+.... +.++...........+ .-.-+|+..|-.+-....-..+.
T Consensus 93 ~~~~~~~i~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~------~~~~~~~~~~G~~~~~~~~~~~~ 150 (213)
T 1vqt_A 93 SCAGYESVERALSATDKHV----------------FVVVKLTSMEGSLEDY------MDRIEKLNKLGCDFVLPGPWAKA 150 (213)
T ss_dssp GGGCHHHHHHHHHHCSSEE----------------EEECCCTTSCCCHHHH------HHHHHHHHHHTCEEECCHHHHHH
T ss_pred CCCCCCHHHHHHHHCCCCC----------------EEEEEEECCCHHHHHH------HHHHHHHHHHCCCCCCCCCHHHH
T ss_conf 5786105666554111321----------------1588740210245899------99999987624474556522455
Q ss_pred HHHHHCC------CCEEC--CCC-CHHHHHHHHHCCCEEEECHHHCCCCCC
Q ss_conf 9988758------94722--477-734899998089889971132389999
Q gi|254780801|r 179 EIARECK------LTKLS--MGM-TRDFELAIASGATSVRIGSGIFGERPC 220 (222)
Q Consensus 179 ~l~~~~~------~~~LS--mGM-S~D~~~Ai~~Gst~vRiGs~iFG~R~~ 220 (222)
.+..... ...++ -|- ...-..+++.|++.+=+||+||++.++
T Consensus 151 ~i~~~~~~~~~~~~~~~~~~gG~~~~~~~~~~~~Gad~iVvGraI~~a~dp 201 (213)
T 1vqt_A 151 LREKIKGKILVPGIRMEVKADDQKDVVTLEEMKGIANFAVLGREIYLSENP 201 (213)
T ss_dssp HTTTCCSCEEECCBC---------CCBCHHHHTTTCSEEEESHHHHTSSCH
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEECCCCCCCCCH
T ss_conf 432046776676315676778855357999998399999989756789999
No 63
>>1dbt_A Orotidine 5'-phosphate decarboxylase; UMP, TIM barrel; HET: U5P; 2.40A {Bacillus subtilis} (A:)
Probab=37.62 E-value=21 Score=16.83 Aligned_cols=182 Identities=12% Similarity=0.067 Sum_probs=77.1
Q ss_pred EEEECCCCCHHHHHHHHHCCC------------CCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHCCC-CHH
Q ss_conf 998718999999999997298------------1000121000111100000125873023024432001320111-000
Q gi|254780801|r 30 LVAVSKMVDSKKIRVALSCGQ------------VIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSL-FDV 96 (222)
Q Consensus 30 LiaVtK~~~~e~I~~~~~~G~------------~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQsNKvk~i~~~-~~~ 96 (222)
+++.-.....+.++.+-..|. ..||---+.+++....... .+++.|.|+.-..+-++..... +|+
T Consensus 7 ivalD~~~l~~~l~~i~~~~~~vd~~~~g~~~~~~~G~~~i~~L~~~~~~~~--~d~k~~di~~~~~~~~~~~~~~gad~ 84 (239)
T 1dbt_A 7 IIALDFASAEETLAFLAPFQQEPLFVKVGMELFYQEGPSIVKQLKERNCELF--LDLKLHDIPTTVNKAMKRLASLGVDL 84 (239)
T ss_dssp EEECCCSSHHHHHHHTGGGTTSCCEEEECHHHHHHHTHHHHHHHHHTTCEEE--EEEEECSCHHHHHHHHHHHHTTTCSE
T ss_pred EEEECCCCHHHHHHHHHHCCCCCCEEEECHHHHHHCCHHHHHHHHHHCHHHH--HHHHHCCCCHHHHHHHHHHHCCCCCE
T ss_conf 9997369999999999970875519998999985249799999875042200--00143358706777877653136546
Q ss_pred --CCCCCCCCHHHHHHHHHH---HHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEECCCCCC--C
Q ss_conf --012222200134433333---311430368897004665634657000122234431043110011101154334--5
Q gi|254780801|r 97 --IETVSREKTASLLSLEMI---KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG--N 169 (222)
Q Consensus 97 --Ihsvds~~~a~~L~~~~~---~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMti~p~~~--d 169 (222)
+|.-......+.+..... +.+......+-+- ...+..+-.+.+. . ....+.....-.|+..|-.. +
T Consensus 85 itvh~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~---~--~~~~~~~d~v~~~a~~~~~~g~~ 157 (239)
T 1dbt_A 85 VNVHAAGGKKMMQAALEGLEEGTPAGKKRPSLIAVT--QLTSTSEQIMKDE---L--LIEKSLIDTVVHYSKQAEESGLD 157 (239)
T ss_dssp EEEEGGGCHHHHHHHHHHHHHHSCTTSCCCEEEEEC--SCTTCCHHHHHHT---S--CBCSCHHHHHHHHHHHHHHTTCS
T ss_pred EEEECCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEE--ECCCCCHHHHHHH---H--HHCCCCCCEEEHHHHHHHHCCCC
T ss_conf 776245654889999987653010024565068875--0256445789875---3--21255430330877656643963
Q ss_pred -CHHHHHHHHHHHHHCCC-------C------EECCCCCHH-HHHHHHHCCCEEEECHHHCCCCCC
Q ss_conf -20589999999887589-------4------722477734-899998089889971132389999
Q gi|254780801|r 170 -PKPHFYLLSEIARECKL-------T------KLSMGMTRD-FELAIASGATSVRIGSGIFGERPC 220 (222)
Q Consensus 170 -~~~~F~~l~~l~~~~~~-------~------~LSmGMS~D-~~~Ai~~Gst~vRiGs~iFG~R~~ 220 (222)
........+.+++.... . .-..|.+-+ -+.|++.|+..|=+||+||++.++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~Gad~ivvGr~I~~a~dp 223 (239)
T 1dbt_A 158 GVVCSVHEAKAIYQAVSPSFLTVTPGIRMSEDAANDQVRVATPAIAREKGSSAIVVGRSITKAEDP 223 (239)
T ss_dssp EEECCGGGHHHHTTTSCTTCEEEECCBCCTTSCCTTCSSCBCHHHHHHTTCSEEEECHHHHTSSCH
T ss_pred EEECCCHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCEEECCHHHHHHCCCCEEEECCCCCCCCCH
T ss_conf 332120344432001334112565423236777799654479999998799999989845589999
No 64
>>1o4u_A Type II quinolic acid phosphoribosyltransferase; TM1645, structural genomics, JCSG, PSI, protein structure initiative; 2.50A {Thermotoga maritima} (A:160-272)
Probab=37.51 E-value=12 Score=18.59 Aligned_cols=59 Identities=14% Similarity=0.086 Sum_probs=36.0
Q ss_pred CCCHHHHEECCCCCCCCHHHHHHHHHHHHHCCCCEECCCCCH-HHHHHHHHCCCEEEECHHHC
Q ss_conf 110011101154334520589999999887589472247773-48999980898899711323
Q gi|254780801|r 154 QLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTR-DFELAIASGATSVRIGSGIF 215 (222)
Q Consensus 154 ~L~i~GLMti~p~~~d~~~~F~~l~~l~~~~~~~~LSmGMS~-D~~~Ai~~Gst~vRiGs~iF 215 (222)
+....++|++.|.. .+......+...-++.+ .-+=|++- +.+.+++.|++.+=+||++|
T Consensus 54 g~D~i~~~~~~~~~--~~~~~~~~~~~~~~~pi-~a~GGI~~~~i~~~~~~Gad~i~~gs~i~ 113 (113)
T 1o4u_A 54 GADIVMLDNLSPEE--VKDISRRIKDINPNVIV-EVSGGITEENVSLYDFETVDVISSSRLTL 113 (113)
T ss_dssp TCSEEEEESCCHHH--HHHHHHHHHHHCTTSEE-EEEECCCTTTGGGGCCTTCCEEEEGGGTS
T ss_pred CCCEEEECCCCHHH--HHHHHHHHHHHCCCEEE-EEECCCCHHHHHHHHHCCCCEEECCHHHC
T ss_conf 99899847988677--99999999975897899-99799989999999865989998496765
No 65
>>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, ATP, protein turnover, ligase, conformational change, thioester, adenylation, transthioesterification, ATP-binding; 2.70A {Saccharomyces cerevisiae} (A:397-585,A:856-903)
Probab=36.56 E-value=22 Score=16.73 Aligned_cols=70 Identities=9% Similarity=0.068 Sum_probs=47.5
Q ss_pred CCCCCCCCHHHHHHHHCCCCCCCCCEE----EECC-CCCCHHHHHCCCCHH-CCCCCCCCHHHHHHHHHHHHCCCE
Q ss_conf 100012100011110000012587302----3024-432001320111000-012222200134433333311430
Q gi|254780801|r 51 VIFAENKLQEAKKKWIPLRKEWDVQLR----FIGS-LQSNKVSEIVSLFDV-IETVSREKTASLLSLEMIKQSRFL 120 (222)
Q Consensus 51 ~~fGENrvQE~~~K~~~l~~~~~i~wH----fIG~-LQsNKvk~i~~~~~~-Ihsvds~~~a~~L~~~~~~~~~~~ 120 (222)
.++|+++++-+.++...+....+++++ .+++ ...+.....+..+|+ |.+.|+...-..|++.+.+.+++.
T Consensus 83 ~diGk~Ka~~~~~~L~~iNp~v~v~i~~~~~~~~~~~~~~~~~~~~~~~DiVI~a~Dn~~~r~~l~~~c~~~~~p~ 158 (237)
T 3cmm_A 83 KDVGKNKSEVAAEAVCAMNPDLKGKINAKIDKVGPETEEIFNDSFWESLDFVTNALDNVDARTYVDRRCVFYRKPL 158 (237)
T ss_dssp GGTTSBHHHHHHHHHHHHCGGGTTTEEEECCCCSGGGTTTSCHHHHHHCSEEEECCSSHHHHHHHHHHHHHHTCCE
T ss_pred HHCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHHHCCCEEEECCCCHHHHHHHHHHHHHCCCCE
T ss_conf 7658739999999999868996625766302456542234772456418889989899999999999999819997
No 66
>>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A (A:)
Probab=36.07 E-value=31 Score=15.68 Aligned_cols=30 Identities=27% Similarity=0.419 Sum_probs=23.6
Q ss_pred CCCCCHH------HHHHHHHCCCEEEECHHHCCCCC
Q ss_conf 2477734------89999808988997113238999
Q gi|254780801|r 190 SMGMTRD------FELAIASGATSVRIGSGIFGERP 219 (222)
Q Consensus 190 SmGMS~D------~~~Ai~~Gst~vRiGs~iFG~R~ 219 (222)
.-+.|++ -..|++.|+.-+=+|+.+|+...
T Consensus 210 G~k~~g~~~~~~~~~~a~~aGa~gi~~GR~i~~~~~ 245 (273)
T 2qjg_A 210 GPKTNTDEEFLQMIKDAMEAGAAGVAVGRNIFQHDD 245 (273)
T ss_dssp CSCCSSHHHHHHHHHHHHHHTCSEEECCHHHHTSSS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEECHHHHCCCC
T ss_conf 899899999999999999879979971405457867
No 67
>>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, pyruvate, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} (A:1-236)
Probab=36.05 E-value=31 Score=15.68 Aligned_cols=27 Identities=15% Similarity=-0.036 Sum_probs=14.9
Q ss_pred ECCCCCHHHHHHHHHCCCEEEECHHHC
Q ss_conf 224777348999980898899711323
Q gi|254780801|r 189 LSMGMTRDFELAIASGATSVRIGSGIF 215 (222)
Q Consensus 189 LSmGMS~D~~~Ai~~Gst~vRiGs~iF 215 (222)
+--|..+-+-.++..|++-.=.|++=+
T Consensus 183 v~~g~d~~~~~~l~~G~~G~~~~~~n~ 209 (236)
T 2vc6_A 183 LLTGEDGTALGYMAHGGHGCISVTANV 209 (236)
T ss_dssp EEESCGGGHHHHHHTTCCEEEESGGGT
T ss_pred ECCCCHHHHHHHHCCCCEEEECCHHHH
T ss_conf 246863789997417973997125222
No 68
>>2g7z_A Conserved hypothetical protein SPY1493; long-fatty acid binding protein, lipid binding protein, PSI, MCSG; HET: MSE HXA; 2.05A {Streptococcus pyogenes serotype M1} (A:1-157)
Probab=35.48 E-value=19 Score=17.09 Aligned_cols=75 Identities=11% Similarity=0.046 Sum_probs=42.4
Q ss_pred EEEEEECCCCCCCCCC--CCCHHHHHHHHHHCCCCCCHHHHEECCCCCCCCHHHHHHHHHH-HHHCCCCEECCCCCHHHH
Q ss_conf 6889700466563465--7000122234431043110011101154334520589999999-887589472247773489
Q gi|254780801|r 122 VYIQVNTGYEIQKSGI--MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI-ARECKLTKLSMGMTRDFE 198 (222)
Q Consensus 122 vliQVN~~~e~~K~G~--~p~el~~l~~~i~~~~~L~i~GLMti~p~~~d~~~~F~~l~~l-~~~~~~~~LSmGMS~D~~ 198 (222)
+=++|+++++.-+-|. +++++.+.+..-...| -|=.|..++-.+.|..+.+- .+.+=.-.+|.|+|+-|.
T Consensus 30 iPl~i~i~~~~y~D~~~i~~~~fy~~~~~~~~~p-------~TS~ps~~~~~~~f~~~~~~gyd~ii~i~iS~~lSgt~~ 102 (157)
T 2g7z_A 30 VPLSVXIDSKLYSDNDLKEEGHFLSLXKASKSLP-------KTSQPPVGLFAETYENLVKKGVTDIVAIHLSPALSGTIE 102 (157)
T ss_dssp ECCEEEETTEEEEGGGCCSTTHHHHHHHHCSSCC-------EEECCCHHHHHHHHHHHHHTTCCEEEEEECCTTTCTHHH
T ss_pred EEEEEEECCEEEECCCCCCHHHHHHHHHCCCCCC-------CCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH
T ss_conf 9799999999987798799999999997189987-------147999999999999997679984999967740138999
Q ss_pred HHHHH
Q ss_conf 99980
Q gi|254780801|r 199 LAIAS 203 (222)
Q Consensus 199 ~Ai~~ 203 (222)
-|...
T Consensus 103 ~a~~a 107 (157)
T 2g7z_A 103 ASRQG 107 (157)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99998
No 69
>>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} (A:)
Probab=35.24 E-value=14 Score=18.14 Aligned_cols=49 Identities=10% Similarity=-0.002 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHCCCCEECCC-CC-HHHHHHHHHCCCEEEECHHHCCCCC
Q ss_conf 0589999999887589472247-77-3489999808988997113238999
Q gi|254780801|r 171 KPHFYLLSEIARECKLTKLSMG-MT-RDFELAIASGATSVRIGSGIFGERP 219 (222)
Q Consensus 171 ~~~F~~l~~l~~~~~~~~LSmG-MS-~D~~~Ai~~Gst~vRiGs~iFG~R~ 219 (222)
.+.+.................| ++ +|...|++.|+..|=|||+||++.+
T Consensus 149 ~~~~~~~~~~~~~~~~~i~~~Gg~~~~~~~~a~~~GaD~vvVGsaI~~a~d 199 (216)
T 1q6o_A 149 GEADITAIKRLSDMGFKVTVTGGLALEDLPLFKGIPIHVFIAGRSIRDAAS 199 (216)
T ss_dssp CHHHHHHHHHHHHTTCEEEEESSCCGGGGGGGTTSCCSEEEESHHHHTSSC
T ss_pred CHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHCCCCEEEECHHHHCCCC
T ss_conf 888899999853889708647987846899999859999998815527999
No 70
>>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix} (A:)
Probab=34.81 E-value=33 Score=15.55 Aligned_cols=12 Identities=0% Similarity=-0.260 Sum_probs=5.0
Q ss_pred CCCHHHHHHHHH
Q ss_conf 700012223443
Q gi|254780801|r 138 MPNQTKDFVILC 149 (222)
Q Consensus 138 ~p~el~~l~~~i 149 (222)
++++....+..+
T Consensus 157 sl~~~~~a~~~~ 168 (276)
T 1vs1_A 157 TVEELLAAAEYI 168 (276)
T ss_dssp CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 277788999999
No 71
>>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} (A:)
Probab=34.72 E-value=19 Score=17.21 Aligned_cols=168 Identities=14% Similarity=0.040 Sum_probs=74.6
Q ss_pred HHCEEEEECCCCC----HHHHHHHHHCCCCCCCCCCCHHHHHHH-HCCCCCCCCCEEEECCC-CCCHHHHHCCC-CHHCC
Q ss_conf 4418998718999----999999997298100012100011110-00001258730230244-32001320111-00001
Q gi|254780801|r 26 DSVSLVAVSKMVD----SKKIRVALSCGQVIFAENKLQEAKKKW-IPLRKEWDVQLRFIGSL-QSNKVSEIVSL-FDVIE 98 (222)
Q Consensus 26 ~~v~LiaVtK~~~----~e~I~~~~~~G~~~fGENrvQE~~~K~-~~l~~~~~i~wHfIG~L-QsNKvk~i~~~-~~~Ih 98 (222)
.+..|++++-..+ .+.+..++++|.+.|=-+--..-.... ..+....+......+.+ -..-+..+.+. +|.+|
T Consensus 15 ~~~~l~~~~~~~~~~~~~~~~~~l~~aG~~~i~l~~~~~~~~~~i~~i~~~~~~~~~~~~~v~~~~~~~~~~~agad~v~ 94 (224)
T 1vhc_A 15 RELKIVPVIALDNADDILPLADTLAKNGLSVAEITFRSEAAADAIRLLRANRPDFLIAAGTVLTAEQVVLAKSSGADFVV 94 (224)
T ss_dssp HHHCEEEEECCSSGGGHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHCTTCEEEEESCCSHHHHHHHHHHTCSEEE
T ss_pred HHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCEEE
T ss_conf 97897999968999999999999998799989996788269999999998289845876403657999999971687877
Q ss_pred CCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEECCCCCCCCHHHHHHHH
Q ss_conf 22222001344333333114303688970046656346570001222344310431100111011543345205899999
Q gi|254780801|r 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178 (222)
Q Consensus 99 svds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMti~p~~~d~~~~F~~l~ 178 (222)
.-+...-.... ..+.+. .+.+-++ +|.|+. ... ...+...++|...|.. +... ...
T Consensus 95 ~~~~~~~~~~~---~~~~~~--~~~~~~~----------t~~e~~---~a~--~~~~d~i~~~~~~~~~--~~~~--~~~ 150 (224)
T 1vhc_A 95 TPGLNPKIVKL---CQDLNF--PITPGVN----------NPXAIE---IAL--EXGISAVKFFPAEASG--GVKX--IKA 150 (224)
T ss_dssp CSSCCHHHHHH---HHHTTC--CEECEEC----------SHHHHH---HHH--HTTCCEEEETTTTTTT--HHHH--HHH
T ss_pred CCCCCHHHHHH---HHHCCC--CCCCCCC----------CHHHHH---HHH--HCCCCEEEECCCCCCC--CHHH--HHH
T ss_conf 89888999999---985699--7168858----------899999---999--8399969974643336--8999--998
Q ss_pred HHHHHCCCCEECCCC--CHHHHHHHHHCCCEEEECHHHCCC
Q ss_conf 998875894722477--734899998089889971132389
Q gi|254780801|r 179 EIARECKLTKLSMGM--TRDFELAIASGATSVRIGSGIFGE 217 (222)
Q Consensus 179 ~l~~~~~~~~LSmGM--S~D~~~Ai~~Gst~vRiGs~iFG~ 217 (222)
......+.+..-+|- .+|...++++|+..|=+||+||+.
T Consensus 151 ~~~~~~~~pi~a~GGI~~~~i~~~~~aGAd~v~vgsai~~~ 191 (224)
T 1vhc_A 151 LLGPYAQLQIXPTGGIGLHNIRDYLAIPNIVACGGSWFVEK 191 (224)
T ss_dssp HHTTTTTCEEEEBSSCCTTTHHHHHTSTTBCCEEECGGGCH
T ss_pred HHCCCCCCEEEEECCCCHHHHHHHHHCCCEEEEECHHHCCH
T ss_conf 85603487288507989889999994899899988142697
No 72
>>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum 3D7} (A:)
Probab=34.48 E-value=33 Score=15.51 Aligned_cols=170 Identities=12% Similarity=0.068 Sum_probs=80.2
Q ss_pred CCCHHHHHHHHHCCCCCC--CCCCCH---------HHHHHHHCCCCCCCCCEEEECCCCCCHHHHHCCC-CHHCCCCCCC
Q ss_conf 999999999997298100--012100---------0111100000125873023024432001320111-0000122222
Q gi|254780801|r 36 MVDSKKIRVALSCGQVIF--AENKLQ---------EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSL-FDVIETVSRE 103 (222)
Q Consensus 36 ~~~~e~I~~~~~~G~~~f--GENrvQ---------E~~~K~~~l~~~~~i~wHfIG~LQsNKvk~i~~~-~~~Ihsvds~ 103 (222)
..+.+.++.+.+.|...+ +.-... +..+..........+..|..-.--..-+..++.. +|.||-....
T Consensus 18 ~~~~~~~~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aGad~v~i~~~~ 97 (227)
T 1tqx_A 18 SKLAEETQRMESLGAEWIHLDVMDMHFVPNLSFGPPVINNLKKYTKSIFFDVHLMVEYPEKYVPLLKTSNQLTFHFEALN 97 (227)
T ss_dssp GGHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCCCHHHHHHHGGGCSSCEEEEEEESSCGGGGGGGCTTSSEEEEEGGGGT
T ss_pred HHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHCCCCEEEEEEEC
T ss_conf 99999999999649997999836695077655598999877652775878878872482766467750576068874311
Q ss_pred ---CHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEECCCCCCC---CHHHHHHH
Q ss_conf ---001344333333114303688970046656346570001222344310431100111011543345---20589999
Q gi|254780801|r 104 ---KTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLL 177 (222)
Q Consensus 104 ---~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMti~p~~~d---~~~~F~~l 177 (222)
..+.++-+.+.+.+ ..+.+.+..+-+ .. ............+..+++..+.... ....-..+
T Consensus 98 ~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~-------~~----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 164 (227)
T 1tqx_A 98 EDTERCIQLAKEIRDNN--LWCGISIKPKTD-------VQ----KLVPILDTNLINTVLVMTVEPGFGGQSFMHDMMGKV 164 (227)
T ss_dssp TCHHHHHHHHHHHHTTT--CEEEEEECTTSC-------GG----GGHHHHTTTCCSEEEEESSCTTCSSCCCCGGGHHHH
T ss_pred CCCCCHHHHHHHHHHCC--CEEEEEECCCCC-------HH----HHHHHHCCCCCCEEEEEEECCCCCCCCCCCCHHHHH
T ss_conf 43310256666564259--657663046653-------56----789986106577899997414666434574036778
Q ss_pred HHHHHHC-CCCEEC--CCCCHHHHHHHHHCCCEEEECHHHCCCC
Q ss_conf 9998875-894722--4777348999980898899711323899
Q gi|254780801|r 178 SEIAREC-KLTKLS--MGMTRDFELAIASGATSVRIGSGIFGER 218 (222)
Q Consensus 178 ~~l~~~~-~~~~LS--mGMS~D~~~Ai~~Gst~vRiGs~iFG~R 218 (222)
+.+.... +.+.+. --.++|...+++.|++-|=+||+||+.-
T Consensus 165 ~~~~~~~~~~pI~~~GGi~~~~~~~~~~~GadgVvvGsai~~~~ 208 (227)
T 1tqx_A 165 SFLRKKYKNLNIQVDGGLNIETTEISASHGANIIVAGTSIFNAE 208 (227)
T ss_dssp HHHHHHCTTCEEEEESSCCHHHHHHHHHHTCCEEEESHHHHTCS
T ss_pred HHHHHHCCCCCEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCC
T ss_conf 88987367866288666788889999976999999666987899
No 73
>>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus HB8} PDB: 2yw4_A (A:)
Probab=33.92 E-value=27 Score=16.12 Aligned_cols=166 Identities=13% Similarity=-0.013 Sum_probs=75.3
Q ss_pred HHCEEEEECCCC----CHHHHHHHHHCCCCCCCCCC----CHHHHHHHHCCCCCCCCCEEEECCCCCCH-HHHHCCC-CH
Q ss_conf 441899871899----99999999972981000121----00011110000012587302302443200-1320111-00
Q gi|254780801|r 26 DSVSLVAVSKMV----DSKKIRVALSCGQVIFAENK----LQEAKKKWIPLRKEWDVQLRFIGSLQSNK-VSEIVSL-FD 95 (222)
Q Consensus 26 ~~v~LiaVtK~~----~~e~I~~~~~~G~~~fGENr----vQE~~~K~~~l~~~~~i~wHfIG~LQsNK-vk~i~~~-~~ 95 (222)
....|++++-.. -.+.++.+.+.|.+.+==+- ..+..+....+. ...-.+.+-.|. +....+. +|
T Consensus 11 ~~~~l~~i~~~~~~~~~~~~~~~~~~~G~~~i~i~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ga~ 85 (207)
T 2yw3_A 11 AESRLLPLLTVRGGEDLLGLARVLEEEGVGALEITLRTEKGLEALKALRKSG-----LLLGAGTVRSPKEAEAALEAGAA 85 (207)
T ss_dssp HHHCEEEEECCCSCCCHHHHHHHHHHTTCCEEEEECSSTHHHHHHHHHTTSS-----CEEEEESCCSHHHHHHHHHHTCS
T ss_pred HHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCC-----CEEEECCCCCHHHHHHHHHHCCC
T ss_conf 8799799996899999999999999879988999558805889999836888-----48964101142789999972786
Q ss_pred HCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEECCCCCCCCHHHHH
Q ss_conf 00122222001344333333114303688970046656346570001222344310431100111011543345205899
Q gi|254780801|r 96 VIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175 (222)
Q Consensus 96 ~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMti~p~~~d~~~~F~ 175 (222)
.+|.-....-... .+...+. .+.+-+. .+.++.+ .. ..+....++|.+.|. .......
T Consensus 86 ~i~~~~~~~~~~~---~~~~~~~--~~~~g~~----------~~~e~~~---a~--~~~~d~i~~~~~~~~--~~~~~~~ 143 (207)
T 2yw3_A 86 FLVSPGLLEEVAA---LAQARGV--PYLPGVL----------TPTEVER---AL--ALGLSALKFFPAEPF--QGVRVLR 143 (207)
T ss_dssp EEEESSCCHHHHH---HHHHHTC--CEEEEEC----------SHHHHHH---HH--HTTCCEEEETTTTTT--THHHHHH
T ss_pred EEECCCCCHHHHH---HHHHCCC--CCCCCCC----------CHHHHHH---HH--HCCCCEEEECCHHHC--CCHHHHH
T ss_conf 8877888599999---9986399--8568849----------9999999---99--869997875313421--7788999
Q ss_pred HHHHHHHHCCCCEECCC-C-CHHHHHHHHHCCCEEEECHHHCCCCCC
Q ss_conf 99999887589472247-7-734899998089889971132389999
Q gi|254780801|r 176 LLSEIARECKLTKLSMG-M-TRDFELAIASGATSVRIGSGIFGERPC 220 (222)
Q Consensus 176 ~l~~l~~~~~~~~LSmG-M-S~D~~~Ai~~Gst~vRiGs~iFG~R~~ 220 (222)
.... ...+.+..-+| + ++|...+++.|+..|=+||.+|++-|.
T Consensus 144 ~~~~--~~~~ipiia~GGI~~~~v~~~~~aGa~~v~vgs~~~~~d~~ 188 (207)
T 2yw3_A 144 AYAE--VFPEVRFLPTGGIKEEHLPHYAALPNLLAVGGSWLLQGNLE 188 (207)
T ss_dssp HHHH--HCTTCEEEEBSSCCGGGHHHHHTCSSBSCEEESGGGSSCHH
T ss_pred HHHC--CCCCCCEEEECCCCHHHHHHHHCCCCEEEEEHHHHCCCCHH
T ss_conf 8752--45568589707989889999983699799981772389899
No 74
>>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/proteomics initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus HB8} (A:)
Probab=33.84 E-value=28 Score=16.03 Aligned_cols=47 Identities=21% Similarity=0.229 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHCCCCE-ECCCCCHHHHHHHHHCCCEEEECHHHCCC
Q ss_conf 058999999988758947-22477734899998089889971132389
Q gi|254780801|r 171 KPHFYLLSEIARECKLTK-LSMGMTRDFELAIASGATSVRIGSGIFGE 217 (222)
Q Consensus 171 ~~~F~~l~~l~~~~~~~~-LSmGMS~D~~~Ai~~Gst~vRiGs~iFG~ 217 (222)
.......+.+++..+.+. .=-|-+..-..++..|++.|=|||+||+.
T Consensus 188 ~~~~~~i~~i~~~~~~pi~vgGGI~~~~~a~~~aGAd~vVVGSAi~~~ 235 (271)
T 1ujp_A 188 EEVKDLVRRIKARTALPVAVGFGVSGKATAAQAAVADGVVVGSALVRA 235 (271)
T ss_dssp -CCHHHHHHHHTTCCSCEEEESCCCSHHHHHHHTTSSEEEECHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHCCCCEEEECHHHHHH
T ss_conf 368899888765136875875697988999874689989986899999
No 75
>>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} (A:1-268,A:370-393)
Probab=32.62 E-value=32 Score=15.60 Aligned_cols=42 Identities=21% Similarity=0.318 Sum_probs=32.1
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHCC--------------CCEECCCCCHHHHHHHH
Q ss_conf 0115433452058999999988758--------------94722477734899998
Q gi|254780801|r 161 MCIPPAMGNPKPHFYLLSEIARECK--------------LTKLSMGMTRDFELAIA 202 (222)
Q Consensus 161 Mti~p~~~d~~~~F~~l~~l~~~~~--------------~~~LSmGMS~D~~~Ai~ 202 (222)
.++-|...|-...|...+++.++++ +..--||||+|--+|--
T Consensus 221 ~~lv~gG~DQ~~~i~l~rdi~~k~~~~~p~~l~~plL~~l~G~KmskS~~~~~~~~ 276 (292)
T 3hv0_A 221 HCLVPHAIDQDPYFRMVRDVAPRLGYLKPSSIHSIFLPSLQGSQTKMSNDDVIAKF 276 (292)
T ss_dssp CEEEEEEGGGHHHHHHHHHHTGGGTCCCCEEEEECCCCC---------CHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 65250363189999999999997187665200245434566523547699999999
No 76
>>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} (A:22-251)
Probab=31.83 E-value=28 Score=15.99 Aligned_cols=164 Identities=9% Similarity=-0.037 Sum_probs=69.8
Q ss_pred CHHHHHHHHHCCCCCCCCCC----CHHHHHHHHCCCCCCCCCEEEECCCCCCH---HHHHCCC-CHHCCCCCCCCHHHHH
Q ss_conf 99999999972981000121----00011110000012587302302443200---1320111-0000122222001344
Q gi|254780801|r 38 DSKKIRVALSCGQVIFAENK----LQEAKKKWIPLRKEWDVQLRFIGSLQSNK---VSEIVSL-FDVIETVSREKTASLL 109 (222)
Q Consensus 38 ~~e~I~~~~~~G~~~fGENr----vQE~~~K~~~l~~~~~i~wHfIG~LQsNK---vk~i~~~-~~~Ihsvds~~~a~~L 109 (222)
..+.+..+++.|...+--.. ..+..+....+.+. ..-.++.++--+- +..+... +|.|+.-+..-....+
T Consensus 41 ~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~i~~i~~~--~~~~~~~~~~~~~~~~~~~~~~~Gad~i~~~~~~~~~~~~ 118 (230)
T 1i4n_A 41 SLEDFIRMYDELADAISILTEKHYFKGDPAFVRAARNL--TCRPILAKDFYIDTVQVKLASSVGADAILIIARILTAEQI 118 (230)
T ss_dssp CHHHHHHHHHHHCSEEEEECCCSSSCCCTHHHHHHHTT--CCSCEEEECCCCSTHHHHHHHHTTCSEEEEEGGGSCHHHH
T ss_pred CHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHH--CCCCCEECCEEECHHHHHHHHHHCCCHHHHHHHHCCHHHH
T ss_conf 99999999845488899964778789999999999971--7887110340305989999987057528899875699999
Q ss_pred HHHHHHHCC-CEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHCC--C
Q ss_conf 333333114-3036889700466563465700012223443104311001110115433452058999999988758--9
Q gi|254780801|r 110 SLEMIKQSR-FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK--L 186 (222)
Q Consensus 110 ~~~~~~~~~-~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMti~p~~~d~~~~F~~l~~l~~~~~--~ 186 (222)
-+...+... ...++..++. ++++...+... ...-+|..++...........+..+..... .
T Consensus 119 ~~~~~~~~~~g~~~~~~~~~----------~~~~~~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v 182 (230)
T 1i4n_A 119 KEIYEAAEELGMDSLVEVHS----------REDLEKVFSVI------RPKIIGINTRDLDTFEIKKNVLWELLPLVPDDT 182 (230)
T ss_dssp HHHHHHHHTTTCEEEEEECS----------HHHHHHHHTTC------CCSEEEEECBCTTTCCBCTTHHHHHGGGSCTTS
T ss_pred HHHHHHHHHHCCEEEEEECC----------HHHHHHHHCCC------CCCEEEECCCCHHHHHCCHHHHHHHHHHCCCCC
T ss_conf 99999999856614535189----------99999872547------882899705217764124899999986178899
Q ss_pred CE-ECCCCC-HHHHHHHHHCCCEEEECHHHCCCCC
Q ss_conf 47-224777-3489999808988997113238999
Q gi|254780801|r 187 TK-LSMGMT-RDFELAIASGATSVRIGSGIFGERP 219 (222)
Q Consensus 187 ~~-LSmGMS-~D~~~Ai~~Gst~vRiGs~iFG~R~ 219 (222)
+. -.-|.+ .+...+++.|+.-|=+||+||+.-+
T Consensus 183 pi~a~GGI~~~~~~~~~~aGad~VvvGsaI~~a~d 217 (230)
T 1i4n_A 183 VVVAESGIKDPRELKDLRGKVNAVLVGTSIMKAEN 217 (230)
T ss_dssp EEEEESCCCCGGGHHHHTTTCSEEEECHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECHHHHCCCC
T ss_conf 89977999999999999808999998878767999
No 77
>>3kts_A Glycerol uptake operon antiterminator regulatory protein; structural genomics, PSI-2, protein structure initiative; HET: UNL; 2.75A {Listeria monocytogenes str} (A:)
Probab=29.76 E-value=40 Score=15.00 Aligned_cols=45 Identities=16% Similarity=0.208 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHCCCCEECCC-C--CHHHHHHHHHCCCEEEECHHHC
Q ss_conf 0589999999887589472247-7--7348999980898899711323
Q gi|254780801|r 171 KPHFYLLSEIARECKLTKLSMG-M--TRDFELAIASGATSVRIGSGIF 215 (222)
Q Consensus 171 ~~~F~~l~~l~~~~~~~~LSmG-M--S~D~~~Ai~~Gst~vRiGs~iF 215 (222)
+..+...+++++.+.++..-.| . ..|...+++.|++.|=+||+++
T Consensus 136 ~~~~~~i~~v~~~~~iPvia~GGI~~~~d~~~~l~~GAd~V~iG~~~l 183 (192)
T 3kts_A 136 GIIPEQVQKMTQKLHIPVIAGGLIETSEQVNQVIASGAIAVTTSNKHL 183 (192)
T ss_dssp TTCHHHHHHHHHHHCCCEEEESSCCSHHHHHHHHTTTEEEEEECCGGG
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCEEEECCCHHH
T ss_conf 678999999997469999976672889999999985997998799789
No 78
>>3c4u_A Fructose-bisphosphate aldolase; FBP aldolase, class II, zinc, glycolysis, lyase, metal- binding; 1.83A {Helicobacter pylori} PDB: 3c52_A* 3c56_A* (A:)
Probab=29.62 E-value=40 Score=14.99 Aligned_cols=97 Identities=16% Similarity=0.200 Sum_probs=55.2
Q ss_pred CEEEEEEEECCC----CC------CCCC-CCCCHHHHHHHHHH-CCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 303688970046----65------6346-57000122234431-043110011101154334520589999999887589
Q gi|254780801|r 119 FLPVYIQVNTGY----EI------QKSG-IMPNQTKDFVILCR-QKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKL 186 (222)
Q Consensus 119 ~~~vliQVN~~~----e~------~K~G-~~p~el~~l~~~i~-~~~~L~i~GLMti~p~~~d~~~~F~~l~~l~~~~~~ 186 (222)
...+.++.-++. |. ..+- -.|+++.+|++.-- .+--+.+-=.-.+-+...+|+-.|..|.++++.+..
T Consensus 126 ~~gv~VEaElG~igg~ed~~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~l~~~~L~eI~~~~~~ 205 (307)
T 3c4u_A 126 NAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTNI 205 (307)
T ss_dssp HTTCEEEEEECC---------------CCCCHHHHHHHHHHHCCSEEEECSSCCCGGGCCSSCCCCCHHHHHHHHHHHCS
T ss_pred HCCCEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCC
T ss_conf 75986788643520257776766620003798999999973287633444333124556676444479999998724798
Q ss_pred CEECCCCC-------------------------HHHHHHHHHCCCEEEECHHHC
Q ss_conf 47224777-------------------------348999980898899711323
Q gi|254780801|r 187 TKLSMGMT-------------------------RDFELAIASGATSVRIGSGIF 215 (222)
Q Consensus 187 ~~LSmGMS-------------------------~D~~~Ai~~Gst~vRiGs~iF 215 (222)
+--.=|=| .|+.-||+.|-.=|-|+|.+.
T Consensus 206 PLVLHG~S~~~~~~~~~~~~~~~v~hG~sG~~~e~~~~ai~~Gi~KiNi~T~l~ 259 (307)
T 3c4u_A 206 PLVLHGASAIPDNVRKSYLDAGGDLKGSKGVPFEFLQESVKGGINKVNTDTDLR 259 (307)
T ss_dssp CEEECSCCCCCHHHHHHHHHTTCCCTTCCCCCHHHHHHHHHHTEEEEEECHHHH
T ss_pred CEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECHHHH
T ss_conf 762577776607788876404755678889999999999977946999787889
No 79
>>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} (A:)
Probab=29.56 E-value=37 Score=15.18 Aligned_cols=165 Identities=13% Similarity=0.037 Sum_probs=74.2
Q ss_pred HHCEEEEECCCCCHH----HHHHHHHCCCCCCCC----CCCHHHHHHHHCCCCCCCCCEEEECCCCC-CHHHHHCC-CCH
Q ss_conf 441899871899999----999999729810001----21000111100000125873023024432-00132011-100
Q gi|254780801|r 26 DSVSLVAVSKMVDSK----KIRVALSCGQVIFAE----NKLQEAKKKWIPLRKEWDVQLRFIGSLQS-NKVSEIVS-LFD 95 (222)
Q Consensus 26 ~~v~LiaVtK~~~~e----~I~~~~~~G~~~fGE----NrvQE~~~K~~~l~~~~~i~wHfIG~LQs-NKvk~i~~-~~~ 95 (222)
.+..|++++-..+.+ .++.+.++|.+.+== -...+..+....+.+ ....+|. +.+-. ..++.++. .++
T Consensus 8 ~~~~l~~~~~~~~~~~~~~~~~~~~~aG~d~i~l~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~g~~ 85 (205)
T 1wa3_A 8 KKHKIVAVLRANSVEEAKEKALAVFEGGVHLIEITFTVPDADTVIKELSFLKE-KGAIIGA-GTVTSVEQCRKAVESGAE 85 (205)
T ss_dssp HHHCEEEEECCSSHHHHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHTHHHHH-TTCEEEE-ESCCSHHHHHHHHHHTCS
T ss_pred HHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCC-CCEEEEE-ECCCCHHHHHHHHHCCCC
T ss_conf 76998999979899999999999998799889996799617899999987308-9808985-032237889999853642
Q ss_pred HCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEECCCCCCCCHHHHH
Q ss_conf 00122222001344333333114303688970046656346570001222344310431100111011543345205899
Q gi|254780801|r 96 VIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175 (222)
Q Consensus 96 ~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMti~p~~~d~~~~F~ 175 (222)
.||+...........+.. ...+.+.+++. .++. ..+. .+.....++.+.| ...-.
T Consensus 86 ~i~~~~~~~~~~~~~~~~-----~~~~~~~~~~~----------~e~~---~a~~--~g~d~i~~~~~~~-----~~~~~ 140 (205)
T 1wa3_A 86 FIVSPHLDEEISQFCKEK-----GVFYMPGVMTP----------TELV---KAMK--LGHTILKLFPGEV-----VGPQF 140 (205)
T ss_dssp EEECSSCCHHHHHHHHHH-----TCEEECEECSH----------HHHH---HHHH--TTCCEEEETTHHH-----HHHHH
T ss_pred EEECCCCCHHHHHHHHHC-----CCCEECCCCCH----------HHHH---HHHH--CCCCEEEECCCCC-----CCHHH
T ss_conf 775799999999999864-----99751661867----------8899---9998--6998897564012-----58899
Q ss_pred HHHHHHHHCCCCE-ECCCC-CHHHHHHHHHCCCEEEECHHHCCC
Q ss_conf 9999988758947-22477-734899998089889971132389
Q gi|254780801|r 176 LLSEIARECKLTK-LSMGM-TRDFELAIASGATSVRIGSGIFGE 217 (222)
Q Consensus 176 ~l~~l~~~~~~~~-LSmGM-S~D~~~Ai~~Gst~vRiGs~iFG~ 217 (222)
..+......+++. -+=|. ++|...++..|+..|=+||++|..
T Consensus 141 ~~~~~~~~~~ipi~a~GGI~~~~i~~~l~~Ga~~v~vgsai~~~ 184 (205)
T 1wa3_A 141 VKAMKGPFPNVKFVPTGGVNLDNVCEWFKAGVLAVGVGSALVKG 184 (205)
T ss_dssp HHHHHTTCTTCEEEEBSSCCTTTHHHHHHHTCSCEEECHHHHCS
T ss_pred HHHHHCCCCCCCEEEECCCCHHHHHHHHHCCCEEEEECHHHCCC
T ss_conf 99886513578578756888899999997899299983562589
No 80
>>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, ATP, protein turnover, ligase, conformational change, thioester, adenylation, transthioesterification, ATP-binding; 2.70A {Saccharomyces cerevisiae} (A:1-159,A:349-396)
Probab=29.12 E-value=41 Score=14.93 Aligned_cols=70 Identities=6% Similarity=-0.089 Sum_probs=44.1
Q ss_pred HCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHCCCCHH-CCCCCCCCHHHHHHHHHHHHCCCE
Q ss_conf 72981000121000111100000125873023024432001320111000-012222200134433333311430
Q gi|254780801|r 47 SCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDV-IETVSREKTASLLSLEMIKQSRFL 120 (222)
Q Consensus 47 ~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQsNKvk~i~~~~~~-Ihsvds~~~a~~L~~~~~~~~~~~ 120 (222)
-++..++|+++++-+.++...+. ...++...-..-........+|+ |-+.|+.+....+++.+.+.+++.
T Consensus 72 ~~~~~~iG~~K~~~~~~~l~~~n----p~v~~~~~~~~~~~~~~~~~~DiIi~~~d~~~~~~~l~~~~~~~~ip~ 142 (207)
T 3cmm_A 72 FLTEKDIGQKRGDVTRAKLAELN----AYVPVNVLDSLDDVTQLSQFQVVVATDTVSLEDKVKINEFCHSSGIRF 142 (207)
T ss_dssp TCCGGGTTSBHHHHHHHHHTTSC----TTSCEEECCCCCCSTTGGGCSEEEECTTSCHHHHHHHHHHHHHHTCEE
T ss_pred CCCHHHCCCCHHHHHHHHHHHHC----CCCCEEEECCCCCHHHHHCCCEEEECCCCCHHHHHHHHHHHHHCCCCE
T ss_conf 87867769879999999999858----998279944898877871799899918999999999999999839978
No 81
>>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} (A:)
Probab=29.12 E-value=26 Score=16.19 Aligned_cols=168 Identities=9% Similarity=0.022 Sum_probs=73.4
Q ss_pred HHCEEEEECCCCCHH----HHHHHHHCCCCCCCCCCCH-HHHHHHHCCCCCC-CCCEEEECCCCCCHHHHHCCC-CHHCC
Q ss_conf 441899871899999----9999997298100012100-0111100000125-873023024432001320111-00001
Q gi|254780801|r 26 DSVSLVAVSKMVDSK----KIRVALSCGQVIFAENKLQ-EAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSL-FDVIE 98 (222)
Q Consensus 26 ~~v~LiaVtK~~~~e----~I~~~~~~G~~~fGENrvQ-E~~~K~~~l~~~~-~i~wHfIG~LQsNKvk~i~~~-~~~Ih 98 (222)
....|++++-..+.+ .++.+.+.|.+.+--+.-. ...+-........ ....+-...+....++..... .|.+|
T Consensus 14 ~~~~l~~~~~~~~~~~~~~~~~~~~~~G~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~gad~i~ 93 (214)
T 1wbh_A 14 TTGPVVPVIVVKKLEHAVPMAKALVAGGVRVLNVTLRTECAVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAI 93 (214)
T ss_dssp HSCSEEEEECCSSGGGHHHHHHHHHHTTCCEEEEESCSTTHHHHHHHHHHHCTTSEEEEESCCSHHHHHHHHHHTCSCEE
T ss_pred HHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCEEE
T ss_conf 73998999978999999999999998799889994798679999999999779862455744548999999982778777
Q ss_pred CCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEECCCCCCCCHHHHHHHH
Q ss_conf 22222001344333333114303688970046656346570001222344310431100111011543345205899999
Q gi|254780801|r 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178 (222)
Q Consensus 99 svds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMti~p~~~d~~~~F~~l~ 178 (222)
......-..... ... ...+.+.+++ ++++...++.-.. .++..+.............+
T Consensus 94 ~~~~~~~~~~~~---~~~--g~~~~~~~~t----------~~e~~~a~~~g~d-------~i~~~~~~~~~~~~~~~~~~ 151 (214)
T 1wbh_A 94 SPGLTEPLLKAA---TEG--TIPLIPGIST----------VSELMLGMDYGLK-------EFKFFPAEANGGVKALQAIA 151 (214)
T ss_dssp ESSCCHHHHHHH---HHS--SSCEEEEESS----------HHHHHHHHHTTCC-------EEEETTTTTTTHHHHHHHHH
T ss_pred CCCCCHHHHHHH---HHC--CCCCCCCCCC----------HHHHHHHHHCCCC-------EEEEEECHHHCCHHHHHHHH
T ss_conf 798989999999---855--9986588186----------7999999987999-------79974024208798999871
Q ss_pred HHHHHCCCCEECC-CC-CHHHHHHHHHCCCEEEECHHHCCC
Q ss_conf 9988758947224-77-734899998089889971132389
Q gi|254780801|r 179 EIARECKLTKLSM-GM-TRDFELAIASGATSVRIGSGIFGE 217 (222)
Q Consensus 179 ~l~~~~~~~~LSm-GM-S~D~~~Ai~~Gst~vRiGs~iFG~ 217 (222)
....+.+.+-. |. ++|...+++.|+.-|=+||+||+.
T Consensus 152 --~~~~~~pI~a~GGi~~~~~~~~~~aGAd~V~vGsai~~~ 190 (214)
T 1wbh_A 152 --GPFSQVRFCPTGGISPANYRDYLALKSVLCIGGSWLVPA 190 (214)
T ss_dssp --TTCTTCEEEEBSSCCTTTHHHHHTSTTBSCEEEGGGSCH
T ss_pred --CCCCCCCEEEECCCCHHHHHHHHHCCCEEEEECHHHCCH
T ss_conf --626578466457988888999996899799988253796
No 82
>>3fem_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, synthase, biosynthetic protein, transferase; 3.02A {Saccharomyces cerevisiae} (A:)
Probab=28.70 E-value=41 Score=14.88 Aligned_cols=41 Identities=24% Similarity=0.353 Sum_probs=27.7
Q ss_pred HHHHHHCCCCEECCC---CCHHHHHHHHHCCCEEEECHHHCCCC
Q ss_conf 999887589472247---77348999980898899711323899
Q gi|254780801|r 178 SEIARECKLTKLSMG---MTRDFELAIASGATSVRIGSGIFGER 218 (222)
Q Consensus 178 ~~l~~~~~~~~LSmG---MS~D~~~Ai~~Gst~vRiGs~iFG~R 218 (222)
............--| -..|-..|++.|+.-|=|||+||-+-
T Consensus 199 ~~~~~~~~ipViaeGgI~tp~da~~a~~lGA~aV~vgtaI~~~~ 242 (297)
T 3fem_A 199 VLEKGKLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKSS 242 (297)
T ss_dssp HHHHTSCSSEEEBCSSCCSHHHHHHHHHTTCSCEECCSSSTTSS
T ss_pred HHHHCCCCEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf 99968988467546885883779999972898798666524689
No 83
>>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} (B:388-706)
Probab=28.61 E-value=32 Score=15.59 Aligned_cols=80 Identities=9% Similarity=0.031 Sum_probs=48.8
Q ss_pred CHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHCCCCH-HCCCCCCCCHHHHHHHHHHHH
Q ss_conf 9999999997298100012100011110000012587302302443200132011100-001222220013443333331
Q gi|254780801|r 38 DSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFD-VIETVSREKTASLLSLEMIKQ 116 (222)
Q Consensus 38 ~~e~I~~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQsNKvk~i~~~~~-~Ihsvds~~~a~~L~~~~~~~ 116 (222)
..+.+..-+-++..++|.++++.+.++...+....++.+ +...+...... .+..+| .|-+.|+......|+..+.+.
T Consensus 60 ~~~nl~r~~~~~~~diG~~Ka~~~~~~l~~~np~v~i~~-~~~~i~~~~~~-~~~~~d~Vi~~~d~~~~~~~l~~~~~~~ 137 (319)
T 2nvu_B 60 DVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVP-HFNKIQDFNDT-FYRQFHIIVCGLDSIIARRWINGMLISL 137 (319)
T ss_dssp CGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCEEEE-EESCGGGSCHH-HHHTCSEEEECCSCHHHHHHHHHHHHHT
T ss_pred CHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEE-ECCCCCCCCHH-HHHCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 477667571257466898899999999998788988999-73567756898-8835999999989999999999999974
Q ss_pred CCC
Q ss_conf 143
Q gi|254780801|r 117 SRF 119 (222)
Q Consensus 117 ~~~ 119 (222)
+.+
T Consensus 138 ~~~ 140 (319)
T 2nvu_B 138 LNY 140 (319)
T ss_dssp CCE
T ss_pred HCC
T ss_conf 211
No 84
>>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol- phosphate, lyase; 2.02A {Zea mays} (A:)
Probab=28.02 E-value=38 Score=15.17 Aligned_cols=47 Identities=19% Similarity=0.232 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHCCCCEEC-CCC--CHHHHHHHHHCCCEEEECHHHCCC
Q ss_conf 05899999998875894722-477--734899998089889971132389
Q gi|254780801|r 171 KPHFYLLSEIARECKLTKLS-MGM--TRDFELAIASGATSVRIGSGIFGE 217 (222)
Q Consensus 171 ~~~F~~l~~l~~~~~~~~LS-mGM--S~D~~~Ai~~Gst~vRiGs~iFG~ 217 (222)
.......+.+.+....+.+. -|. ..|-.-|++.|++-|=|||+|++.
T Consensus 187 ~~~~~~~~~~~~~~~~pvi~~gGI~~~~dv~~~l~~GAdgV~VGtai~~~ 236 (262)
T 1rd5_A 187 PRVESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIGSAMVRQ 236 (262)
T ss_dssp THHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHH
T ss_conf 02788999875136887799927899999999985499999988899999
No 85
>>1eg7_A Formyltetrahydrofolate synthetase; folate binding, ATP binding, formate binding, monovalent cation binding, ligase; 2.50A {Moorella thermoacetica} (A:438-535)
Probab=27.61 E-value=17 Score=17.45 Aligned_cols=79 Identities=19% Similarity=0.169 Sum_probs=39.4
Q ss_pred CHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCC-CEEEEE---EEECCCCCCCCCCCCCHHHHHHHHHHCCCC----CC
Q ss_conf 0013201110000122222001344333333114-303688---970046656346570001222344310431----10
Q gi|254780801|r 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR-FLPVYI---QVNTGYEIQKSGIMPNQTKDFVILCRQKYQ----LN 156 (222)
Q Consensus 85 NKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~-~~~vli---QVN~~~e~~K~G~~p~el~~l~~~i~~~~~----L~ 156 (222)
.|+..|++...=-..|.=-..|++--+..++.+- .++|++ |-.+|++|+.-|.. .+..=-+..++-..+ +-
T Consensus 10 eKIe~IA~~IYGA~~V~~s~~A~kqL~~~e~~G~~~lPVCmAKT~~S~S~dp~~~g~P-~~f~~~vrd~~~~~GAgfiv~ 88 (98)
T 1eg7_A 10 DKIAKIATEIYGADGVNYTAEADKAIQRYESLGYGNLPVVMAKTQYSFSDDMTKLGRP-RNFTITVREVRLSAGGRLIVP 88 (98)
T ss_dssp HHHHHHHHHTTCCSEEEECHHHHHHHHHHHHTTCTTSCEEEECCTTSSSSCTTCCSCC-CSCEEEECCCEEETTTEEEEE
T ss_pred HHHHHHHHHHCCCCCEEECHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCC-CCCEEEEEEEEECCCCEEEEE
T ss_conf 9999999982499854578999999999997799888778880787757794234999-897688548998468618999
Q ss_pred HHH-HEECC
Q ss_conf 011-10115
Q gi|254780801|r 157 VEG-LMCIP 164 (222)
Q Consensus 157 i~G-LMti~ 164 (222)
+.| +||||
T Consensus 89 ~~g~i~tMP 97 (98)
T 1eg7_A 89 ITGAIMTMP 97 (98)
T ss_dssp CSSTTCCSC
T ss_pred EECCCCCCC
T ss_conf 525511079
No 86
>>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} (A:1-294)
Probab=27.07 E-value=44 Score=14.70 Aligned_cols=67 Identities=16% Similarity=0.078 Sum_probs=48.3
Q ss_pred CCH--HCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCC-CCCCCCCCHHHHHHHHHHCCCCCCHHHHEEC
Q ss_conf 100--0012222200134433333311430368897004665-6346570001222344310431100111011
Q gi|254780801|r 93 LFD--VIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI-QKSGIMPNQTKDFVILCRQKYQLNVEGLMCI 163 (222)
Q Consensus 93 ~~~--~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~-~K~G~~p~el~~l~~~i~~~~~L~i~GLMti 163 (222)
.+| +++|+-++..+..+-..+.+.+...++.+.+....+. ..+|.+..++...+.. .++...|+-|.
T Consensus 139 gvD~i~~ET~~~~~E~~~~~~~~~~~~~~~p~~~s~~~~~~g~l~~G~~~~~~~~~~~~----~~~~~iGiNC~ 208 (294)
T 1q7z_A 139 GVDGIIFETFSDILELKAAVLAAREVSRDVFLIAHMTFDEKGRSLTGTDPANFAITFDE----LDIDALGINCS 208 (294)
T ss_dssp TCSEEEEEEECCHHHHHHHHHHHHHHCSSSCEEEEECCCTTSCCTTSCCHHHHHHHHHT----SSCSEEEEESS
T ss_pred CCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHC----CCCCHHCCCCC
T ss_conf 98789985100588899999999984654651379997799971688868999998732----68530101257
No 87
>>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 2px9_A (B:1-167,B:386-440)
Probab=27.05 E-value=41 Score=14.89 Aligned_cols=69 Identities=12% Similarity=0.142 Sum_probs=47.8
Q ss_pred CCCCCCCCCHHHHHHHHCCCCCCCCCEE-EECCC-CCCHHHHHCCCCHH-CCCCCCCCHHHHHHHHHHHHCCCE
Q ss_conf 8100012100011110000012587302-30244-32001320111000-012222200134433333311430
Q gi|254780801|r 50 QVIFAENKLQEAKKKWIPLRKEWDVQLR-FIGSL-QSNKVSEIVSLFDV-IETVSREKTASLLSLEMIKQSRFL 120 (222)
Q Consensus 50 ~~~fGENrvQE~~~K~~~l~~~~~i~wH-fIG~L-QsNKvk~i~~~~~~-Ihsvds~~~a~~L~~~~~~~~~~~ 120 (222)
..+.|.++++-+.+....+.. +++.. +...+ ..+.....++.+|+ |...|+...-..+++.+.+.+.+.
T Consensus 65 ~~diG~~Ka~~a~~~L~~~np--~v~i~~~~~~i~~~~~~~~~~~~~DiVi~a~Dn~~ar~~in~~c~~~~ip~ 136 (222)
T 1y8q_B 65 KKHVGRSKAQVAKESVLQFYP--KANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRMCLAADVPL 136 (222)
T ss_dssp GGGTTSBHHHHHHHHHHTTCT--TCEEEEEESCTTSTTSCHHHHTTCSEEEECCSCHHHHHHHHHHHHHHTCCE
T ss_pred HHHCCCHHHHHHHHHHHHHCC--CCEEEEECCCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHCCCCE
T ss_conf 356787899999999998788--987999705557831389997269999989999999999999999859988
No 88
>>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} (A:)
Probab=25.93 E-value=46 Score=14.56 Aligned_cols=86 Identities=16% Similarity=0.078 Sum_probs=52.3
Q ss_pred CCCCCCCCCHHHH--HHHHHHCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHCCCCEECCC-C--CHHHHHHHHHCCC
Q ss_conf 5634657000122--234431043110011101154334520589999999887589472247-7--7348999980898
Q gi|254780801|r 132 IQKSGIMPNQTKD--FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMG-M--TRDFELAIASGAT 206 (222)
Q Consensus 132 ~~K~G~~p~el~~--l~~~i~~~~~L~i~GLMti~p~~~d~~~~F~~l~~l~~~~~~~~LSmG-M--S~D~~~Ai~~Gst 206 (222)
..+.|..+..... .+.... ..+.....++...-........+.....+.+....+.+.-| . ..|...|++.|++
T Consensus 144 ~~~~~~~~~~~~~~~~a~~~~-~~g~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~ipvia~GGI~~~~Di~~~~~~Gad 222 (253)
T 1h5y_A 144 YVKGGREATGLDAVKWAKEVE-ELGAGEILLTSIDRDGTGLGYDVELIRRVADSVRIPVIASGGAGRVEHFYEAAAAGAD 222 (253)
T ss_dssp EETTTTEEEEEEHHHHHHHHH-HHTCSEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCS
T ss_pred EEECCCCCCCCCHHHHHHHHH-HCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCC
T ss_conf 996884347977999999998-4799889998660248678857899999986489889998788999999999878991
Q ss_pred EEEECHHHCCCC
Q ss_conf 899711323899
Q gi|254780801|r 207 SVRIGSGIFGER 218 (222)
Q Consensus 207 ~vRiGs~iFG~R 218 (222)
-|=|||++++.-
T Consensus 223 gV~vG~a~~~~~ 234 (253)
T 1h5y_A 223 AVLAASLFHFRV 234 (253)
T ss_dssp EEEESHHHHTTS
T ss_pred EEEEHHHHHCCC
T ss_conf 777746888599
No 89
>>1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} (A:)
Probab=25.76 E-value=11 Score=18.87 Aligned_cols=47 Identities=11% Similarity=0.025 Sum_probs=30.5
Q ss_pred HHHHHHHHHHH--CCCCEECCCCCH---HHHHHHHHCCCEEEECHHHCCCCC
Q ss_conf 89999999887--589472247773---489999808988997113238999
Q gi|254780801|r 173 HFYLLSEIARE--CKLTKLSMGMTR---DFELAIASGATSVRIGSGIFGERP 219 (222)
Q Consensus 173 ~F~~l~~l~~~--~~~~~LSmGMS~---D~~~Ai~~Gst~vRiGs~iFG~R~ 219 (222)
....++..... .+++...+|==. |....|..||++|-+||+.||...
T Consensus 170 ~i~l~~~~~~~~~~~i~Iig~GGI~s~~da~e~i~aGA~~Vqigta~iGts~ 221 (226)
T 1vcv_A 170 RAAAIARYIKEKGYRLGVKMAGGIRTREQAKAIVDAIGWGEDPARVRLGTST 221 (226)
T ss_dssp HHHHHHHHHHHHTCCCEEEEESSCCSHHHHHHHHHHHCSCSCTTTEEEEESC
T ss_pred HHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCC
T ss_conf 9999999999859862697868979999999999855226888988972477
No 90
>>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} (A:)
Probab=25.47 E-value=47 Score=14.50 Aligned_cols=45 Identities=22% Similarity=0.369 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHCCCCEE-CCCC-C-HHHHHHHHHCCCEEEECHHHCC
Q ss_conf 589999999887589472-2477-7-3489999808988997113238
Q gi|254780801|r 172 PHFYLLSEIARECKLTKL-SMGM-T-RDFELAIASGATSVRIGSGIFG 216 (222)
Q Consensus 172 ~~F~~l~~l~~~~~~~~L-SmGM-S-~D~~~Ai~~Gst~vRiGs~iFG 216 (222)
......+.+.+..+.+.+ .-|- | .|-..|++.||..|=|||+||.
T Consensus 192 ~~~~~v~~~~~~~~ipii~~GGI~t~~dv~~a~~~GAd~V~vGtai~~ 239 (268)
T 1qop_A 192 PLHHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISGSAIVK 239 (268)
T ss_dssp CCHHHHHHHHHTTCCCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred HHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHH
T ss_conf 689999999873789748983259899999998638999998789999
No 91
>>1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} (A:)
Probab=25.46 E-value=47 Score=14.50 Aligned_cols=76 Identities=24% Similarity=0.237 Sum_probs=49.0
Q ss_pred CCCHHHHHHHHHHCCCCCCHHHHEE-CCCCCCCCHHHHHHHHHHHHHCCCCEECCCCCH----HHHHHHHHCCCEEEECH
Q ss_conf 7000122234431043110011101-154334520589999999887589472247773----48999980898899711
Q gi|254780801|r 138 MPNQTKDFVILCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIARECKLTKLSMGMTR----DFELAIASGATSVRIGS 212 (222)
Q Consensus 138 ~p~el~~l~~~i~~~~~L~i~GLMt-i~p~~~d~~~~F~~l~~l~~~~~~~~LSmGMS~----D~~~Ai~~Gst~vRiGs 212 (222)
.|++..+|++..- ..-|-+ .+=| -|.....|+-.|..|+++.+.+..+---=|-|| ++.-|++.|-+=|-|+|
T Consensus 156 ~pe~a~~Fv~~Tg-vD~LAv-aiGt~HG~y~~~p~l~~~~L~~I~~~~~~pLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T 233 (286)
T 1gvf_A 156 DPQEAKRFVELTG-VDSLAV-AIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVTKVNVAT 233 (286)
T ss_dssp CHHHHHHHHHHHC-CSEEEE-CSSCCSSCCSSCCCCCHHHHHHHHHHCCSCEEECCCTTCCHHHHHHHHHTTEEEEEECH
T ss_pred CHHHHHHHHHHCC-CCEEEE-ECCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEEECH
T ss_conf 8899999998329-871310-00553456788876328899975304698668747899988999999872927998572
Q ss_pred HHC
Q ss_conf 323
Q gi|254780801|r 213 GIF 215 (222)
Q Consensus 213 ~iF 215 (222)
.+.
T Consensus 234 ~~~ 236 (286)
T 1gvf_A 234 ELK 236 (286)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
No 92
>>3big_A Fructose-1,6-bisphosphatase class II GLPX; carbohydrate metabolism, cytoplasm, hydrolase, manganese; 1.85A {Escherichia coli K12} PDB: 2r8t_A 3bih_A 1ni9_A 3d1r_A* (A:116-275)
Probab=24.99 E-value=48 Score=14.45 Aligned_cols=43 Identities=14% Similarity=0.197 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHHHHHHCCCCC
Q ss_conf 9999999999819896441899871899999999999729810
Q gi|254780801|r 10 FKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVI 52 (222)
Q Consensus 10 i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~~~~~~G~~~ 52 (222)
+.++|+..++.-|++.++++++.--+-+-.+-|.++-++|.|.
T Consensus 26 ~~~Nl~~vA~algk~v~dltV~vLdRpRH~~lI~eiR~~Gari 68 (160)
T 3big_A 26 LADNLRNVAAALGKPLSELTVTILAKPRHDAVIAEMQQLGVRV 68 (160)
T ss_dssp HHHHHHHHHHHHTSCGGGCEEEEECSGGGHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHCCCCHHHCEEEEEECCHHHHHHHHHHHCCCEE
T ss_conf 8999999999809996583899985645799999999759918
No 93
>>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A (A:90-353)
Probab=24.94 E-value=48 Score=14.44 Aligned_cols=75 Identities=7% Similarity=-0.030 Sum_probs=44.9
Q ss_pred HHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHCCCCHH-CCCCCCCCHHHHHHHHHHHHCCCE
Q ss_conf 972981000121000111100000125873023024432001320111000-012222200134433333311430
Q gi|254780801|r 46 LSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDV-IETVSREKTASLLSLEMIKQSRFL 120 (222)
Q Consensus 46 ~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQsNKvk~i~~~~~~-Ihsvds~~~a~~L~~~~~~~~~~~ 120 (222)
+-++..++|.|+++-+.++...+....++.-+.-.--..+........+|+ +-..|+...-..|+..+.+.+++.
T Consensus 73 ~~~~~~dig~~Ka~al~~~l~~~np~~~i~~~~~~~~~~~~~~~~~~~~diV~~~~d~~~~~~~l~~~~~~~~~p~ 148 (264)
T 3h5n_A 73 VLFSEDDVGKNKTEVIKRELLKRNSEISVSEIALNINDYTDLHKVPEADIWVVSADHPFNLINWVNKYCVRANQPY 148 (264)
T ss_dssp TTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEECCCCSGGGGGGSCCCSEEEECCCCSTTHHHHHHHHHHHTTCCE
T ss_pred CCCCHHHCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 2568667098499999999997589871453023332455777765422443256623555567689987269987
No 94
>>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} (A:424-522)
Probab=24.73 E-value=20 Score=17.01 Aligned_cols=80 Identities=16% Similarity=0.059 Sum_probs=39.6
Q ss_pred CHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCC-CEEEEE---EEECCCCCCCCCCCCCHHHHHHHHHHCCCC----CC
Q ss_conf 0013201110000122222001344333333114-303688---970046656346570001222344310431----10
Q gi|254780801|r 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR-FLPVYI---QVNTGYEIQKSGIMPNQTKDFVILCRQKYQ----LN 156 (222)
Q Consensus 85 NKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~-~~~vli---QVN~~~e~~K~G~~p~el~~l~~~i~~~~~----L~ 156 (222)
.|++.|++...=-..|+=-..|++=-+..++.+- .++|++ |-.++.+|+.-|. |.+..=-+..++-..+ +-
T Consensus 10 eKI~~IA~~IYGA~~V~~s~~A~kql~~~e~~G~~~lPVCmAKTqyS~s~dp~~~g~-P~~f~~~vr~~~~~~GAgFiv~ 88 (99)
T 3do6_A 10 KKIEILAKEIYRAGRVEFSDTAKNALKFIKKHGFDELPVIVAKTPKSISHDPSLRGA-PEGYTFVVSDLFVSAGAGFVVA 88 (99)
T ss_dssp HHHHHHHHHTSCCSEEEECHHHHHHHHHHHHTTCTTSCEEEECCSSSSSSCTTCCSC-CCSCEEEECEEEEETTTTEEEE
T ss_pred HHHHHHHHHCCCCCCEEECHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCC-CCCCEEEEEEEEECCCCCEEEE
T ss_conf 999999997039871778999999999999759998888887078776679100289-9997687558998688856999
Q ss_pred HHH-HEECCC
Q ss_conf 011-101154
Q gi|254780801|r 157 VEG-LMCIPP 165 (222)
Q Consensus 157 i~G-LMti~p 165 (222)
+.| +||||-
T Consensus 89 ~~g~i~tMPG 98 (99)
T 3do6_A 89 LSGDINLXPG 98 (99)
T ss_dssp ECSCCCSSCC
T ss_pred EECCCCCCCC
T ss_conf 8474212798
No 95
>>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, transferase/biosynthetic protein complex; 1.98A {Escherichia coli K12} PDB: 1zfn_A* 1zkm_A (1:)
Probab=24.71 E-value=34 Score=15.47 Aligned_cols=70 Identities=17% Similarity=0.197 Sum_probs=48.5
Q ss_pred CCCCCCCCCCHHHHHHHHCCCCCCCCCEEEE-CCCCCCHHHHHCCCCHH-CCCCCCCCHHHHHHHHHHHHCCCE
Q ss_conf 9810001210001111000001258730230-24432001320111000-012222200134433333311430
Q gi|254780801|r 49 GQVIFAENKLQEAKKKWIPLRKEWDVQLRFI-GSLQSNKVSEIVSLFDV-IETVSREKTASLLSLEMIKQSRFL 120 (222)
Q Consensus 49 G~~~fGENrvQE~~~K~~~l~~~~~i~wHfI-G~LQsNKvk~i~~~~~~-Ihsvds~~~a~~L~~~~~~~~~~~ 120 (222)
+..++|.++++-+.++...+.. ++.+.-+ ..+..-.....+..+|+ |-++|+...-..|+..+.+.+++.
T Consensus 75 ~~~diG~~Ka~~~~~~l~~~np--~~~i~~~~~~i~~~~~~~~~~~~D~Ii~~~d~~~~r~~l~~~~~~~~~~~ 146 (251)
T 1zud_1 75 TTEDIDRPKSQVSQQRLTQLNP--DIQLTALQQRLTGEALKDAVARADVVLDCTDNMATRQEINAACVALNTPL 146 (251)
T ss_dssp CGGGTTSBHHHHHHHHHHHHCT--TSEEEEECSCCCHHHHHHHHHHCSEEEECCSSHHHHHHHHHHHHHTTCCE
T ss_pred CHHHHHHHHHHHHHHHHHHHCC--CCCEEEHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCC
T ss_conf 8899976517999999986413--65211034432343432215666279844633888789999998508982
No 96
>>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino- acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; 1.45A {Staphylococcus aureus} PDB: 3di1_A 3di0_A (A:1-229)
Probab=24.22 E-value=50 Score=14.35 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=10.5
Q ss_pred HHHHHCCCCCCHHHHEECCCCC
Q ss_conf 3443104311001110115433
Q gi|254780801|r 146 VILCRQKYQLNVEGLMCIPPAM 167 (222)
Q Consensus 146 ~~~i~~~~~L~i~GLMti~p~~ 167 (222)
++.++....+-..|+|.+||.-
T Consensus 87 i~~a~~a~~~G~d~i~v~pP~~ 108 (229)
T 3daq_A 87 IQASIQAKALGADAIMLITPYY 108 (229)
T ss_dssp HHHHHHHHHHTCSEEEEECCCS
T ss_pred HHHHHHHHHCCCCEEEEECCCC
T ss_conf 8999999962998288620215
No 97
>>2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3gay_A* 3gak_A* 3gb6_A* (A:)
Probab=24.22 E-value=50 Score=14.35 Aligned_cols=97 Identities=14% Similarity=0.104 Sum_probs=57.0
Q ss_pred CEEEEEEEECCCCC------CCCC--CCCCHHHHHHHHHH-CCCCCCHHHHEECCCC--CCCCHHHHHHHHHHHHHCCCC
Q ss_conf 30368897004665------6346--57000122234431-0431100111011543--345205899999998875894
Q gi|254780801|r 119 FLPVYIQVNTGYEI------QKSG--IMPNQTKDFVILCR-QKYQLNVEGLMCIPPA--MGNPKPHFYLLSEIARECKLT 187 (222)
Q Consensus 119 ~~~vliQVN~~~e~------~K~G--~~p~el~~l~~~i~-~~~~L~i~GLMti~p~--~~d~~~~F~~l~~l~~~~~~~ 187 (222)
...+-++.-++.-. +..+ -.|+++.+|++..- .+--+.+-=...+=+. ..+|+-.|..++++++....+
T Consensus 127 ~~gv~VEaElG~igg~e~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~~~p~L~~~~l~~I~~~~~~P 206 (323)
T 2isw_A 127 ARSVSVEAELGTLGGIEEDVQNTVQLTEPQDAKKFVELTGVDALAVAIGTSHGAYKFKSESDIRLAIDRVKTISDLTGIP 206 (323)
T ss_dssp TTTCEEEEEESCC----------CCCCCHHHHHHHHHHHCCSEEEECSSCCSSSBCCCC----CCCCHHHHHHHHHHCSC
T ss_pred CCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 45714898655226866656555557898999999715687611334666614667788874456799999876514976
Q ss_pred EECC------------------------CCCH-HHHHHHHHCCCEEEECHHHC
Q ss_conf 7224------------------------7773-48999980898899711323
Q gi|254780801|r 188 KLSM------------------------GMTR-DFELAIASGATSVRIGSGIF 215 (222)
Q Consensus 188 ~LSm------------------------GMS~-D~~~Ai~~Gst~vRiGs~iF 215 (222)
---= |.+. |+.-||+.|-+=|-|+|.++
T Consensus 207 LVLHGgS~~p~~~~~~~~~~gg~lhg~~G~~~e~i~kai~~GI~KiNi~T~l~ 259 (323)
T 2isw_A 207 LVMHGSSSVPKDVKDMINKYGGKMPDAVGVPIESIVHAIGEGVCKINVDSDSR 259 (323)
T ss_dssp EEECSCCCCCHHHHHHHHHTTCCCTTCBCCCHHHHHHHHHTTEEEEEECHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCEEECCCHHHH
T ss_conf 43467777750267776531542346789989999999986987873254999
No 98
>>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} (A:)
Probab=23.99 E-value=50 Score=14.32 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=9.0
Q ss_pred EEEEEEEECCCCCCCCCCCCCHHHHHHH
Q ss_conf 0368897004665634657000122234
Q gi|254780801|r 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVI 147 (222)
Q Consensus 120 ~~vliQVN~~~e~~K~G~~p~el~~l~~ 147 (222)
++++++=+-. .++..++++.+..++.
T Consensus 127 ~pi~iyn~P~--~~g~~l~~~~l~~l~~ 152 (289)
T 2yxg_A 127 LPIVLYNVPS--RTAVNLEPKTVKLLAE 152 (289)
T ss_dssp SCEEEEECHH--HHSCCCCHHHHHHHHH
T ss_pred CCEEEEECCC--CCCCCCCHHHHHHHHH
T ss_conf 9889997863--1155430788999986
No 99
>>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, X-RAY diffraction, riken structural genomics/proteomics initiative; 1.80A {Thermus thermophilus} (A:)
Probab=23.10 E-value=46 Score=14.56 Aligned_cols=65 Identities=17% Similarity=0.048 Sum_probs=38.0
Q ss_pred CHHHHEECCCCCCCC-HHHHHHHHHHHHH--CCCCE-ECCCC-CHHHHHHHHHCCCEEEECHHHCCCCCC
Q ss_conf 001110115433452-0589999999887--58947-22477-734899998089889971132389999
Q gi|254780801|r 156 NVEGLMCIPPAMGNP-KPHFYLLSEIARE--CKLTK-LSMGM-TRDFELAIASGATSVRIGSGIFGERPC 220 (222)
Q Consensus 156 ~i~GLMti~p~~~d~-~~~F~~l~~l~~~--~~~~~-LSmGM-S~D~~~Ai~~Gst~vRiGs~iFG~R~~ 220 (222)
.+..+..+.+-.... ......+...... .+.+. ..-|. +++--.|++.|+.-|=|||+||++...
T Consensus 176 d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~GGI~~~~~~~~l~~GAdgV~vGsai~~a~d~ 245 (254)
T 1vc4_A 176 EVLGINNRDLATLHINLETAPRLGRLARKRGFGGVLVAESGYSRKEELKALEGLFDAVLIGTSLMRAPDL 245 (254)
T ss_dssp SEEEEESBCTTTCCBCTTHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHTTTTTCSEEEECHHHHTSSCH
T ss_pred CEEEEECCCHHHHHCCHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHCCCCEEEECHHHCCCCCH
T ss_conf 6899952555665313888988632000257798899846999999999998699999988364079999
No 100
>>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A (A:)
Probab=22.99 E-value=52 Score=14.20 Aligned_cols=35 Identities=34% Similarity=0.493 Sum_probs=27.9
Q ss_pred CCCCEECCCC--C-HHHHHHHHHCCCEEEECHHHCCCC
Q ss_conf 5894722477--7-348999980898899711323899
Q gi|254780801|r 184 CKLTKLSMGM--T-RDFELAIASGATSVRIGSGIFGER 218 (222)
Q Consensus 184 ~~~~~LSmGM--S-~D~~~Ai~~Gst~vRiGs~iFG~R 218 (222)
...+.+..|= | .|...+++.|+.=|-|||+||...
T Consensus 208 ~~ipVIAaGGI~t~edv~~~l~~GA~gV~VGTa~~~a~ 245 (305)
T 2nv1_A 208 LPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSD 245 (305)
T ss_dssp CSSCEEBCSCCCSHHHHHHHHHTTCSCEEECGGGGGSS
T ss_pred CCEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf 98577436886888889999973898798556504689
No 101
>>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae} (A:)
Probab=22.41 E-value=54 Score=14.12 Aligned_cols=66 Identities=5% Similarity=-0.040 Sum_probs=39.9
Q ss_pred CCHHHHEECCCC-------CCCCHHHHHHHHHHHHHCCCC---EECCCCCHH-HHHHHHH-CCCEEEECHHHCCCCCC
Q ss_conf 100111011543-------345205899999998875894---722477734-8999980-89889971132389999
Q gi|254780801|r 155 LNVEGLMCIPPA-------MGNPKPHFYLLSEIARECKLT---KLSMGMTRD-FELAIAS-GATSVRIGSGIFGERPC 220 (222)
Q Consensus 155 L~i~GLMti~p~-------~~d~~~~F~~l~~l~~~~~~~---~LSmGMS~D-~~~Ai~~-Gst~vRiGs~iFG~R~~ 220 (222)
++..=+|++.|. ....-+....++++.+..+.. .-.=|.+.+ ...-++. |++.+=+||++|+..++
T Consensus 139 i~~i~~m~v~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~I~vdGGI~~~~i~~l~~~~g~~~vv~Gsai~~~~d~ 216 (224)
T 2bdq_A 139 IDQLVALGFTRILLHGSSNGEPIIENIKHIKALVEYANNRIEIXVGGGVTAENYQYICQETGVKQAHGTRITQXAGDP 216 (224)
T ss_dssp HHHHHHTTCCEEEECSCSSCCCGGGGHHHHHHHHHHHTTSSEEEECSSCCTTTHHHHHHHHTCCEEEETTCC------
T ss_pred HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCEEEEEECCCCCCCCC
T ss_conf 999997598501444764341299999999999996399859998699799999999996598489970225888992
No 102
>>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} (A:)
Probab=21.78 E-value=55 Score=14.04 Aligned_cols=44 Identities=18% Similarity=0.098 Sum_probs=30.7
Q ss_pred HHHHHHHHHCCCCE-ECCCCCH-HHHHHHHHCCCEEEECHHHCCCC
Q ss_conf 99999988758947-2247773-48999980898899711323899
Q gi|254780801|r 175 YLLSEIARECKLTK-LSMGMTR-DFELAIASGATSVRIGSGIFGER 218 (222)
Q Consensus 175 ~~l~~l~~~~~~~~-LSmGMS~-D~~~Ai~~Gst~vRiGs~iFG~R 218 (222)
...+........+. -+-|+|. |-..+++.|+..|=+||+||+.-
T Consensus 162 ~~~~~~~~~~~~~i~a~GGi~~~~i~~~~~~Gad~v~vgsai~~~~ 207 (227)
T 2tps_A 162 LIEAVRRQGISIPIVGIGGITIDNAAPVIQAGADGVSMISAISQAE 207 (227)
T ss_dssp HHHHHHHTTCCCCEEEESSCCTTTSHHHHHTTCSEEEESHHHHTSS
T ss_pred HHHHHHHHCCCCCEEEECCCCHHHHHHHHHHCCCEEEEHHHHHCCC
T ss_conf 1124443047888787368999999999984998899849966799
No 103
>>1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} (A:)
Probab=21.73 E-value=55 Score=14.03 Aligned_cols=98 Identities=15% Similarity=0.131 Sum_probs=55.4
Q ss_pred CCEEEEEEEECCC---CCC--------CCCCCCCHHHHHHHHHH-CCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 4303688970046---656--------34657000122234431-04311001110115433452058999999988758
Q gi|254780801|r 118 RFLPVYIQVNTGY---EIQ--------KSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185 (222)
Q Consensus 118 ~~~~vliQVN~~~---e~~--------K~G~~p~el~~l~~~i~-~~~~L~i~GLMti~p~~~d~~~~F~~l~~l~~~~~ 185 (222)
++..+.++.-++. ++. .---.|+++..|++..- .+--+.+-=.-.+-+....|+-.|..|+++++.+.
T Consensus 123 ~~~gv~VE~ElG~vgg~ed~~~~~~~~~~~T~pe~a~~Fv~~tgvD~LAvsiGt~HG~y~~~~~p~L~~~~L~~I~~~~~ 202 (305)
T 1rvg_A 123 HAVGVTVEAELGRLAGIEEHVAVDEKDALLTNPEEARIFMERTGADYLAVAIGTSHGAYKGKGRPFIDHARLERIARLVP 202 (305)
T ss_dssp HHTTCEEEEEESCCCCSCC------CCTTCCCHHHHHHHHHHHCCSEEEECSSCCSSSBCSSSSCCCCHHHHHHHHHHCC
T ss_pred HHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 88654011000132034566555653112378899999999968565244431555033776643210879999971479
Q ss_pred CCEECCCC---------------------C----HHHHHHHHHCCCEEEECHHHC
Q ss_conf 94722477---------------------7----348999980898899711323
Q gi|254780801|r 186 LTKLSMGM---------------------T----RDFELAIASGATSVRIGSGIF 215 (222)
Q Consensus 186 ~~~LSmGM---------------------S----~D~~~Ai~~Gst~vRiGs~iF 215 (222)
.+--.=|= | .++..||++|-.=|-|+|.++
T Consensus 203 ~PLVlHGgS~~p~~~~~~~~~~g~v~hg~sG~~~e~i~~ai~~Gi~KiNi~T~~~ 257 (305)
T 1rvg_A 203 APLVLHGASAVPPELVERFRASGGEIGEAAGIHPEDIKKAISLGIAKINTDTDLR 257 (305)
T ss_dssp SCEEECSCCCCCHHHHHHHHHTTCCCCSCBCCCHHHHHHHHHTTEEEEEECHHHH
T ss_pred CCEECCCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEECHHHH
T ss_conf 8864357766648887530221112466679999999999865968998481899
No 104
>>1bwd_A ADT, protein (inosamine-phosphate amidinotransferase); streptomycin; 3.10A {Streptomyces griseus} (A:167-225)
Probab=21.69 E-value=23 Score=16.55 Aligned_cols=17 Identities=18% Similarity=0.223 Sum_probs=10.2
Q ss_pred CCCEEEECHHHCCCCCC
Q ss_conf 89889971132389999
Q gi|254780801|r 204 GATSVRIGSGIFGERPC 220 (222)
Q Consensus 204 Gst~vRiGs~iFG~R~~ 220 (222)
+|..+|.|+.||+.+.-
T Consensus 14 aAd~~R~GrDi~~q~S~ 30 (59)
T 1bwd_A 14 AANVLRFGTDLLYLVSD 30 (59)
T ss_dssp GGGEEEETTEEEEECBT
T ss_pred CCEEEEECCEEEECCCC
T ss_conf 54489977878860445
No 105
>>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} (A:)
Probab=20.19 E-value=59 Score=13.82 Aligned_cols=119 Identities=9% Similarity=0.006 Sum_probs=60.4
Q ss_pred CCCCCCCC----HHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCC-CCCHHHHHHHHHHCCCCCCHHHHEECCCCCCCCH
Q ss_conf 01222220----013443333331143036889700466563465-7000122234431043110011101154334520
Q gi|254780801|r 97 IETVSREK----TASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK 171 (222)
Q Consensus 97 Ihsvds~~----~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~-~p~el~~l~~~i~~~~~L~i~GLMti~p~~~d~~ 171 (222)
+++-++.+ ...++...|.+.+ +++++++-+-+..-+... .|+.+...+..+.+ .+..+.-.=+-........
T Consensus 131 ~g~~~~~~~~~~~i~~v~~~~~~~g--~~vile~i~~~~~~~d~~~~~~~i~~a~~~a~e-~GaD~iKt~~~~~~~~~~~ 207 (304)
T 1to3_A 131 WRSDEDAQQRLNXVKEFNELCHSNG--LLSIIEPVVRPPRCGDKFDREQAIIDAAKELGD-SGADLYKVEXPLYGKGARS 207 (304)
T ss_dssp ECTTSCHHHHHHHHHHHHHHHHTTT--CEEEEEEEECCCSSCSCCCHHHHHHHHHHHHTT-SSCSEEEECCGGGGCSCHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCC--CCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCCCHHHHH
T ss_conf 4876569999999999999998739--973898731477767655408899999998764-3976999407876045667
Q ss_pred HHHHHHHHHHHHCCC--CEECCCCCHH-----HHHHHHHCCCEEEECHHHCCCC
Q ss_conf 589999999887589--4722477734-----8999980898899711323899
Q gi|254780801|r 172 PHFYLLSEIARECKL--TKLSMGMTRD-----FELAIASGATSVRIGSGIFGER 218 (222)
Q Consensus 172 ~~F~~l~~l~~~~~~--~~LSmGMS~D-----~~~Ai~~Gst~vRiGs~iFG~R 218 (222)
+....++++.+.... ..+|-|-|.| .+.|.+.|+.=+=+|++||+.-
T Consensus 208 ~~v~~~~~~~~~~~~pv~vaGG~~~~~~~~~~i~~a~~~Ga~G~~~GR~i~~~~ 261 (304)
T 1to3_A 208 DLLTASQRLNGHINXPWVILSSGVDEKLFPRAVRVAXEAGASGFLAGRAVWSSV 261 (304)
T ss_dssp HHHHHHHHHHHTCCSCEEECCTTSCTTTHHHHHHHHHHTTCCEEEESHHHHGGG
T ss_pred HHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHCCCEEEEECHHHHHCC
T ss_conf 899999998725899689992898989999999999967993998563643482
No 106
>>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} (A:)
Probab=20.16 E-value=59 Score=13.82 Aligned_cols=78 Identities=9% Similarity=0.044 Sum_probs=45.5
Q ss_pred CCCHHHHHHHHHHCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHC-CCC-EECCCC-CHHHHHHHHHCCCEEEECHHH
Q ss_conf 70001222344310431100111011543345205899999998875-894-722477-734899998089889971132
Q gi|254780801|r 138 MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC-KLT-KLSMGM-TRDFELAIASGATSVRIGSGI 214 (222)
Q Consensus 138 ~p~el~~l~~~i~~~~~L~i~GLMti~p~~~d~~~~F~~l~~l~~~~-~~~-~LSmGM-S~D~~~Ai~~Gst~vRiGs~i 214 (222)
.|....+.+....+ .....+.|...|-..-.......++++.... +.+ ...-|. |.+-..+++.|+..|=|||+|
T Consensus 136 ~p~~~~~~~~~~~~--~~~~~~~~~~~~g~~G~~~~~~~~~~~~~~~~~~pi~v~gGI~~~~~~~~~~aGAd~vvvGSai 213 (240)
T 1viz_A 136 DADLNMDDIVAYAR--VSELLQLPIFYLEYSGVLGDIEAVKKTKAVLETSTLFYGGGIKDAETAKQYAEHADVIVVGNAV 213 (240)
T ss_dssp CCCCCHHHHHHHHH--HHHHTTCSEEEEECTTSCCCHHHHHHHHHTCSSSEEEEESSCCSHHHHHHHHTTCSEEEECTHH
T ss_pred CCCCCCHHHHHHHH--HHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCEEEECHHH
T ss_conf 68989469999999--8635875999984157775316699999864686499977849999999998069999989799
Q ss_pred CCC
Q ss_conf 389
Q gi|254780801|r 215 FGE 217 (222)
Q Consensus 215 FG~ 217 (222)
|..
T Consensus 214 ~~~ 216 (240)
T 1viz_A 214 YED 216 (240)
T ss_dssp HHC
T ss_pred HHH
T ss_conf 825
Done!