HHsearch results for GI: 254780801 and protein with PDBid: 1vfs_A
>1vfs_A Alanine racemase; TIM-barrel, greek-KEY motief, isomerase; HET: KCX DCS; 1.90A {Streptomyces lavendulae} SCOP: b.49.2.2 c.1.6.1 PDB: 1vfh_A* 1vft_A*
Probab=99.45 E-value=1.1e-12 Score=105.29 Aligned_cols=205 Identities=15% Similarity=0.126 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHCEEEEECCC----CCHHHHH-HHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEC
Q ss_conf 9999999999999981989644189987189----9999999-9997298100012100011110000012587302302
Q gi|254780801|r 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKM----VDSKKIR-VALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80 (222)
Q Consensus 6 nl~~i~~~I~~a~~~~gR~~~~v~LiaVtK~----~~~e~I~-~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG 80 (222)
|++.++.+++...+.+ + ..+++||.|. +....|. .+.++|++.||-.+++|+.+=..... +...-..|
T Consensus 13 dl~ai~~N~~~ir~~~---~-~~~i~aVVKAnAYGhG~~~va~~l~~~Gi~~faVa~i~EA~~LR~~g~---~~~ilil~ 85 (386)
T 1vfs_A 13 DLDAVRANVRALRARA---P-RSALMAVVKSNAYGHGAVPCARAAQEAGAAWLGTATPEEALELRAAGI---QGRIMCWL 85 (386)
T ss_dssp EHHHHHHHHHHHHTTS---T-TSEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEESSHHHHHHHHHTTC---CSEEEECC
T ss_pred EHHHHHHHHHHHHHHC---C-CCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCC---CCCEEEEE
T ss_conf 6999999999999768---9-983999992504638799999999986989999813999999997189---99858994
Q ss_pred CCCCCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHH---HCCCCCCH
Q ss_conf 443200132011100001222220013443333331143036889700466563465700012223443---10431100
Q gi|254780801|r 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC---RQKYQLNV 157 (222)
Q Consensus 81 ~LQsNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i---~~~~~L~i 157 (222)
.....-++.++. .+.+-++.+...++.++..+.+.+++.+|.|+|+|+ .+|.||.|+|+.++++.+ ...++|++
T Consensus 86 ~~~~~~~~~~~~-~~~~~~i~s~~~l~~~~~~a~~~~~~~~vhlkiDTG--M~RlG~~~~e~~~~~~~~~~~~~~~~l~~ 162 (386)
T 1vfs_A 86 WTPGGPWREAIE-TDIDVSVSGMWALDEVRAAARAAGRTARIQLKADTG--LGRNGCQPADWAELVGAAVAAQAEGTVQV 162 (386)
T ss_dssp CCTTCCHHHHHH-TTCEEEECSHHHHHHHHHHHHHHTSCEEEEEEBCSS--CCSSSBCHHHHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHH-HCCCEEECCHHHHHHHHHHHHHCCCCCEEEEEECCC--CCCCCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 487058999986-073135475999999999998649982499995167--78678583788999999998621796427
Q ss_pred HHHEEC-CCCCC-C-C--HHHHHHHHHH---HHH--CCCCEECCCCCHHHHHHHHHCCCEEEECHHHCCCCCC
Q ss_conf 111011-54334-5-2--0589999999---887--5894722477734899998089889971132389999
Q gi|254780801|r 158 EGLMCI-PPAMG-N-P--KPHFYLLSEI---ARE--CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220 (222)
Q Consensus 158 ~GLMti-~p~~~-d-~--~~~F~~l~~l---~~~--~~~~~LSmGMS~D~~~Ai~~Gst~vRiGs~iFG~R~~ 220 (222)
.|+||= +..++ + + +.++..+.++ ..+ +.....+++-|.---.--+.--+|||+|.++||-.|.
T Consensus 163 ~Gi~TH~a~ad~~~~~~~~~Q~~~F~~~~~~l~~~~~~~~~~h~anS~~~l~~~~~~~d~vR~Gi~lYG~~p~ 235 (386)
T 1vfs_A 163 TGVWSHFACADEPGHPSIRLQLDAFRDMLAYAEKEGVDPEVRHIANSPATLTLPETHFDLVRTGLAVYGVSPS 235 (386)
T ss_dssp EEEECCCSSTTSTTCHHHHHHHHHHHHHHHHHHHTTCCCSEEEEECHHHHHHCGGGCSSEEEECGGGGTCCSC
T ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHCCCCCCCCCCCCCCEEEECCCCC
T ss_conf 9998644555775306789999999999999997178861565158632017840148742553154667767