HHsearch results for GI: 254780801 and protein with PDBid: 2qgh_A
>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A*
Probab=97.59 E-value=0.00078 Score=45.64 Aligned_cols=159 Identities=12% Similarity=0.031 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHHH-HHHCCCCCCCCCCCHHHHHH-HHCCCCCCCCCEEEECCCCC
Q ss_conf 99999999999998198964418998718999999999-99729810001210001111-00000125873023024432
Q gi|254780801|r 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRV-ALSCGQVIFAENKLQEAKKK-WIPLRKEWDVQLRFIGSLQS 84 (222)
Q Consensus 7 l~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~~-~~~~G~~~fGENrvQE~~~K-~~~l~~~~~i~wHfIG~LQs 84 (222)
++.|+++++.-.....+ ..+++.-..|.-|...|.. +.+.|. .|-=.-..|+..- ...++ .-+..|-|+.-+
T Consensus 40 ~~~l~~n~~~~~~a~~~--~~~~i~YAvKaN~~~~vl~~l~~~G~-g~dvaS~~El~~al~~G~~---~~~Ii~~gp~k~ 113 (425)
T 2qgh_A 40 FDKIKQAFLNYKEAFKG--RKSLICYALKANSNLSILSLLAHLES-GADCVSIGEIQRALKAGIK---PYRIVFSGVGKS 113 (425)
T ss_dssp HHHHHHHHHHHHHTTCS--SCEEEEEEGGGCCCHHHHHHHHHTTC-EEEESSHHHHHHHHHTTCC---GGGEEECCTTCC
T ss_pred HHHHHHHHHHHHHHCCC--CCCEEEEEEECCCCHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCC---HHHEEECCCCCC
T ss_conf 99999999999985799--99759999713899999999998099-3998299999999975998---678464256688
Q ss_pred CHHH-HHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEC------------CCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 0013-2011100001222220013443333331143036889700------------46656346570001222344310
Q gi|254780801|r 85 NKVS-EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNT------------GYEIQKSGIMPNQTKDFVILCRQ 151 (222)
Q Consensus 85 NKvk-~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~------------~~e~~K~G~~p~el~~l~~~i~~ 151 (222)
...- .+...--.+.++|++..+++|...+...++..++.|.||. +...+|+|+..+++.+++..+..
T Consensus 114 ~~~i~~a~~~gv~~~~~ds~~el~~i~~~a~~~~~~~~v~lRinp~~~~~~~~~~~~g~~~skfg~~~~~~~~~~~~~~~ 193 (425)
T 2qgh_A 114 AFEIEQALKLNILFLNVESFMELKTIETIAQSLGIKARISIRINPNIDAKTHPYISTGLKENKFGVGEKEALEMFLWAKK 193 (425)
T ss_dssp HHHHHHHHHTTCSEEEECSHHHHHHHHHHHHHHTCCEEEEEEBCCCCCCCSCGGGBCCSTTSSSSBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 89999887638200002137899999999986499747999982798866676523664446665026789999875542
Q ss_pred CCCCCHHHHEE-CCCCCCCCH
Q ss_conf 43110011101-154334520
Q gi|254780801|r 152 KYQLNVEGLMC-IPPAMGNPK 171 (222)
Q Consensus 152 ~~~L~i~GLMt-i~p~~~d~~ 171 (222)
.++|++.||-. ++....|+.
T Consensus 194 ~~~l~~~Glh~HvgS~~~~~~ 214 (425)
T 2qgh_A 194 SAFLEPVSVHFHIGSQLLDLE 214 (425)
T ss_dssp CSSEEEEEEECCCBSSBCCHH
T ss_pred CCCEEEEEEEEECCCCCCCCH
T ss_conf 043578789970686666606