HHSEARCH alignment of GI: 254780801 and SCOP domain: d1bd0a2

Alignment
>d1bd0a2 c.1.6.1 (A:12-244) Alanine racemase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=99.55  E-value=4.5e-14  Score=112.96  Aligned_cols=202  Identities=15%  Similarity=0.138  Sum_probs=143.1

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCHHHCEEEEECCC----CCHHHHHH-HHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEE
Q ss_conf             8999999999999999981989644189987189----99999999-997298100012100011110000012587302
Q gi|254780801|r    3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKM----VDSKKIRV-ALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLR   77 (222)
Q Consensus         3 i~~nl~~i~~~I~~a~~~~gR~~~~v~LiaVtK~----~~~e~I~~-~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wH   77 (222)
                      |+.|++.+++.+          ++..+++||.|.    +....|.. ++++|++.||--+++|+..-...-.   +...-
T Consensus         6 l~~N~~~ir~~~----------~~~~~i~aVVKAnAYGhG~~~ia~~l~~~G~~~f~Va~i~EA~~LR~~g~---~~~Il   72 (233)
T d1bd0a2           6 IYDNVENLRRLL----------PDDTHIMAVVKANAYGHGDVQVARTALEAGASRLAVAFLDEALALREKGI---EAPIL   72 (233)
T ss_dssp             HHHHHHHHHHHS----------CTTCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEESSHHHHHHHHHTTC---CSCEE
T ss_pred             HHHHHHHHHHHC----------CCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHCC---CCEEE
T ss_conf             999999999848----------99896999972234758779999999965767431653020899998277---64473


Q ss_pred             EECCCCCCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCH-HHHHHHHHHCCCCCC
Q ss_conf             3024432001320111000012222200134433333311430368897004665634657000-122234431043110
Q gi|254780801|r   78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ-TKDFVILCRQKYQLN  156 (222)
Q Consensus        78 fIG~LQsNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~e-l~~l~~~i~~~~~L~  156 (222)
                      ..|.........++. .+.+.+|.+...++.++.. .+.+++.+|.|+||||  .+|.||.+++ +..++..+...+++.
T Consensus        73 vl~~~~~~~~~~~~~-~~i~~~v~~~~~~~~~~~~-~~~~~~~~vhLkvDTG--M~RlG~~~~e~~~~~~~~~~~~~~l~  148 (233)
T d1bd0a2          73 VLGASRPADAALAAQ-QRIALTVFRSDWLEEASAL-YSGPFPIHFHLKMDTG--MGRLGVKDEEETKRIVALIERHPHFV  148 (233)
T ss_dssp             ECSCCCGGGHHHHHH-TTEEEEECCHHHHHHHHHH-CCCSSCEEEEEEBCSS--SCSSSBCSHHHHHHHHHHHHHSTTEE
T ss_pred             ECCCCCCHHHHHHHH-CCCCCEEEHHHHHHHHHHH-HCCCCCEEEEEEECCC--CCCCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf             126876077887654-1464234369986556652-0357524789986256--66678984898999999985066642


Q ss_pred             HHHHEECCCCCCCC-----HHHHHHHHHHHHHCC--CCEECCCCCHHHHHHHHHCCCEEEECHHHCCCCCCC
Q ss_conf             01110115433452-----058999999988758--947224777348999980898899711323899999
Q gi|254780801|r  157 VEGLMCIPPAMGNP-----KPHFYLLSEIARECK--LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ  221 (222)
Q Consensus       157 i~GLMti~p~~~d~-----~~~F~~l~~l~~~~~--~~~LSmGMS~D~~~Ai~~Gst~vRiGs~iFG~R~~~  221 (222)
                      +.|+||==+..+++     ..+|..+.++.+.++  ...+|+.-|.-.-.--+..-+|||.|-+|||--|.+
T Consensus       149 i~Gi~THla~ad~~~~~~~~~q~~~f~~~~~~l~~~~~~~h~anSaa~l~~~~~~~d~vR~Gi~lYG~~p~~  220 (233)
T d1bd0a2         149 LEGLYTHFATADEVNTDYFSYQYTRFLHMLEWLPSRPPLVHCANSAASLRFPDRTFNMVRFGIAMYGLAPSP  220 (233)
T ss_dssp             EEEEECCCSSTTSSCCHHHHHHHHHHHHHHTTCSSCCSEEECCCHHHHHHCTTSCTTEEEECGGGGTCCSCG
T ss_pred             HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHCCCCCCCCEECCCCEEECCCCCC
T ss_conf             466531204777522047899999999999863265630400141998569855697877294207879888


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: PLP-binding barrel
family: Alanine racemase-like, N-terminal domain
domain: Alanine racemase
species: Bacillus stearothermophilus [TaxId: 1422]