HHSEARCH alignment of GI: 254780801 and SCOP domain: d1knwa2

Alignment
>d1knwa2 c.1.6.1 (A:32-278) Diaminopimelate decarboxylase LysA {Escherichia coli [TaxId: 562]}
Probab=95.88  E-value=0.07  Score=30.89  Aligned_cols=171  Identities=15%  Similarity=0.149  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHH-HHHHCCCCCCCCCCCHHHHHH-HHCCCCC-CCCCEEEECCCC
Q ss_conf             9999999999999819896441899871899999999-999729810001210001111-0000012-587302302443
Q gi|254780801|r    7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIR-VALSCGQVIFAENKLQEAKKK-WIPLRKE-WDVQLRFIGSLQ   83 (222)
Q Consensus         7 l~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~-~~~~~G~~~fGENrvQE~~~K-~~~l~~~-~~i~wHfIG~LQ   83 (222)
                      ++.|+++++..     |..+  .+.=..|..|...|. .+.+.|. .|-=.-..|+..- ...++.. ..-+--|-|+.-
T Consensus         2 ~~~ir~~~~~l-----~~~~--~v~YA~KaN~~~~vl~~l~~~G~-g~dv~S~~El~~al~~G~~~~~~~~~Ii~~g~~k   73 (247)
T d1knwa2           2 AQIIRRQIAAL-----KQFD--VVRFAQKACSNIHILRLMREQGV-KVDSVSLGEIERALAAGYNPQTHPDDIVFTADVI   73 (247)
T ss_dssp             HHHHHHHHHTT-----TTSS--EEEEEGGGCCCHHHHHHHHHTTC-EEEECSHHHHHHHHHTTCCTTTCTTSEEEEESCC
T ss_pred             HHHHHHHHHHH-----CCCC--EEEEEECCCCCHHHHHHHHHCCC-CEEEECHHHHHHHHHHCCCCCCCHHHEEECCCCC
T ss_conf             79999999970-----3789--89997101898999999998499-7898299999999980777556754525327731


Q ss_pred             C-CHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEC------------CCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             2-00132011100001222220013443333331143036889700------------4665634657000122234431
Q gi|254780801|r   84 S-NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNT------------GYEIQKSGIMPNQTKDFVILCR  150 (222)
Q Consensus        84 s-NKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~------------~~e~~K~G~~p~el~~l~~~i~  150 (222)
                      + .-+++++.+--.| .+||+...++|.+.+    +..++.|.||.            ++..+|+|+.++++..+++.+.
T Consensus        74 ~~~~l~~a~~~~~~i-~~ds~~el~~l~~~~----~~~~i~lRinp~~~~~~~~~~~~~~~~sKFG~~~~~~~~~~~~~~  148 (247)
T d1knwa2          74 DQATLERVSELQIPV-NAGSVDMLDQLGQVS----PGHRVWLRVNPGFGHGHSQKTNTGGENSKHGIWYTDLPAALDVIQ  148 (247)
T ss_dssp             CHHHHHHHHHHTCCE-EESSHHHHHHHHHHS----TTCEEEEEEECSCCSSCTTSCCSSSTTCCCSEEGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH-CHHHHHHHHHHHHHC----CCCHHHEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             046899999876330-101467899998642----311232023236444455433332222455544022245656655


Q ss_pred             CCCCCCHHHHEE-CCCCCCCCHHHHHHHHHHHHH-----CCCCEECCC
Q ss_conf             043110011101-154334520589999999887-----589472247
Q gi|254780801|r  151 QKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIARE-----CKLTKLSMG  192 (222)
Q Consensus       151 ~~~~L~i~GLMt-i~p~~~d~~~~F~~l~~l~~~-----~~~~~LSmG  192 (222)
                       ..++++.||-+ ++....+ ...+..+..+.+.     ..+..|.+|
T Consensus       149 -~~~~~l~GlH~HigSq~~~-~~~~~~~~~~~~~~~~~g~~~~~ldiG  194 (247)
T d1knwa2         149 -RHHLQLVGIHMHIGSGVDY-AHLEQVCGAMVRQVIEFGQDLQAISAG  194 (247)
T ss_dssp             -HTTCEEEEEECCCCCTTCH-HHHHHHHHHHHHHHHHHTCCCSEEECC
T ss_pred             -HCCCCEEEEHHCCCCCCHH-HHHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf             -2155032202124765204-678999999888886305775188756


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: PLP-binding barrel
family: Alanine racemase-like, N-terminal domain
domain: Diaminopimelate decarboxylase LysA
species: Escherichia coli [TaxId: 562]