HHSEARCH alignment of GI: 254780801 and SCOP domain: d1rcqa2

Alignment
>d1rcqa2 c.1.6.1 (A:8-233) Alanine racemase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=99.47  E-value=2.7e-13  Score=107.71  Aligned_cols=187  Identities=16%  Similarity=0.141  Sum_probs=129.0

Q ss_pred             HCEEEEECCC----CCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHCCCCHHCCCCCC
Q ss_conf             4189987189----999999999972981000121000111100000125873023024432001320111000012222
Q gi|254780801|r   27 SVSLVAVSKM----VDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSR  102 (222)
Q Consensus        27 ~v~LiaVtK~----~~~e~I~~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQsNKvk~i~~~~~~Ihsvds  102 (222)
                      ..+++||.|-    +....|..+++.|++.||-..++|+.+-....... +| +=|-|.....-...++. .+.+-++.+
T Consensus        18 ~~~i~aVVKanAYGhG~~~va~~l~~g~~~faVa~~~Ea~~LR~~g~~~-~I-lvl~~~~~~~~~~~~~~-~~i~~~i~~   94 (226)
T d1rcqa2          18 GARALAVIKADAYGHGAVRCAEALAAEADGFAVACIEEGLELREAGIRQ-PI-LLLEGFFEASELELIVA-HDFWCVVHC   94 (226)
T ss_dssp             CSEEEEECHHHHHTTCHHHHHHHHTTTCSEEEESSHHHHHHHHHTTCCS-CE-EETTCCSSGGGHHHHHH-TTEEEEECS
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHCCHHHHHHCCCCC-CE-EEECCCCCHHHHHHHHH-CCCCCEECC
T ss_conf             9959999813356175999999999666611355410089999729998-55-87114687789999985-166615442


Q ss_pred             CCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEECCCCCCCC-----HHHHHHH
Q ss_conf             20013443333331143036889700466563465700012223443104311001110115433452-----0589999
Q gi|254780801|r  103 EKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP-----KPHFYLL  177 (222)
Q Consensus       103 ~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMti~p~~~d~-----~~~F~~l  177 (222)
                      ...++.+...  ..+++.+|.|+|+||  .+|.||.++|+.+++..+..++++++.|+||--+..+++     +.+...+
T Consensus        95 ~~~~~~~~~~--~~~~~~~vhlkiDTG--M~RlG~~~~e~~~~~~~~~~~~~l~~~gi~tHfa~ad~~~~~~~~~Q~~~F  170 (226)
T d1rcqa2          95 AWQLEAIERA--SLARPLNVWLKMDSG--MHRVGFFPEDFRAAHERLRASGKVAKIVMMSHFSRADELDCPRTEEQLAAF  170 (226)
T ss_dssp             HHHHHHHHHC--CCSSCEEEEEEBCSS--SCSSSBCHHHHHHHHHHHHHTTCEEEEEEECCCSSTTCTTCTHHHHHHHHH
T ss_pred             HHHHHHHHHH--HHCCCEEEEEEEECC--CCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             9999999997--412522689998346--432466858888888876413443300003543565410116899888999


Q ss_pred             HHHHHHCCCCEECCCCCHHHHHHHHHCCCEEEECHHHCCCCCCC
Q ss_conf             99988758947224777348999980898899711323899999
Q gi|254780801|r  178 SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ  221 (222)
Q Consensus       178 ~~l~~~~~~~~LSmGMS~D~~~Ai~~Gst~vRiGs~iFG~R~~~  221 (222)
                      .++.+.+.. .+|+--|.-.-..=+..-+|||+|.++||--|..
T Consensus       171 ~~~~~~~~~-~~h~aNSaa~l~~~~~~~d~vR~Gi~lYG~~P~~  213 (226)
T d1rcqa2         171 SAASQGLEG-EISLRNSPAVLGWPKVPSDWVRPGILLYGATPFE  213 (226)
T ss_dssp             HHHHTTCCS-CEECCCHHHHHHCTTSCCSEECCCGGGGTCCSSS
T ss_pred             HHHHHCCCC-CCCCCCCHHHHCCCCCCCCEECCCCEEECCCCCC
T ss_conf             999851123-5210377998779977898876082115839687


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: PLP-binding barrel
family: Alanine racemase-like, N-terminal domain
domain: Alanine racemase
species: Pseudomonas aeruginosa [TaxId: 287]