Query         gi|254780801|ref|YP_003065214.1| hypothetical protein CLIBASIA_03460 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 222
No_of_seqs    125 out of 3258
Neff          5.9 
Searched_HMMs 13730
Date          Wed Jun  1 08:12:00 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780801.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1ct5a_ c.1.6.2 (A:) "Hypothet 100.0       0       0  517.4  16.0  212    3-216    13-244 (244)
  2 d1vfsa2 c.1.6.1 (A:13-249) Ala  99.6   1E-14 7.5E-19  117.2  11.6  205    7-221     2-224 (237)
  3 d1bd0a2 c.1.6.1 (A:12-244) Ala  99.5 4.5E-14 3.2E-18  113.0  12.2  202    3-221     6-220 (233)
  4 d1rcqa2 c.1.6.1 (A:8-233) Alan  99.5 2.7E-13   2E-17  107.7  11.3  187   27-221    18-213 (226)
  5 d1twia2 c.1.6.1 (A:50-313) Dia  97.7 0.00098 7.1E-08   43.4  13.1  183    3-192     5-213 (264)
  6 d1hkva2 c.1.6.1 (A:46-310) Dia  97.6 0.00037 2.7E-08   46.2  10.2  177    8-192     3-211 (265)
  7 d1f3ta2 c.1.6.1 (A:44-283) Euk  96.9  0.0076 5.6E-07   37.4  10.2  152    7-171     2-163 (240)
  8 d7odca2 c.1.6.1 (A:44-283) Euk  96.0    0.04 2.9E-06   32.6   9.5  152    7-171     2-163 (240)
  9 d1knwa2 c.1.6.1 (A:32-278) Dia  95.9    0.07 5.1E-06   30.9  10.5  171    7-192     2-194 (247)
 10 d1rpxa_ c.1.2.2 (A:) D-ribulos  87.3    0.65 4.7E-05   24.4   5.5   68  152-219   138-215 (230)
 11 d1q6oa_ c.1.2.3 (A:) 3-keto-L-  83.9    0.45 3.3E-05   25.4   3.4  154   52-220    39-198 (213)
 12 d1tqja_ c.1.2.2 (A:) D-ribulos  83.1     1.1 8.3E-05   22.7   5.2   68  153-220   131-208 (221)
 13 d2flia1 c.1.2.2 (A:3-219) D-ri  82.2     1.1 7.9E-05   22.9   4.8   69  152-220   127-205 (217)
 14 d1eixa_ c.1.2.3 (A:) Orotidine  77.0     2.1 0.00015   21.0   4.8  156   53-219    42-218 (231)
 15 d1h1ya_ c.1.2.2 (A:) D-ribulos  74.9     2.8  0.0002   20.1   8.0   74  146-219   125-204 (220)
 16 d1vqta1 c.1.2.3 (A:1-198) Orot  59.6     3.9 0.00029   19.1   3.3  140   54-218    35-187 (198)
 17 d1tqxa_ c.1.2.2 (A:) D-ribulos  57.1     6.1 0.00044   17.8   6.6   67  153-219   134-206 (221)
 18 d1to3a_ c.1.10.1 (A:) Putative  50.9     7.6 0.00056   17.2   8.2  109  104-217   140-258 (291)
 19 d1dbta_ c.1.2.3 (A:) Orotidine  47.8     3.9 0.00028   19.2   1.7  155   52-219    41-222 (237)
 20 d2b0ja2 c.2.1.6 (A:1-242) 5,10  32.7      14  0.0011   15.3   8.0  141   36-185    78-235 (242)
 21 d2czda1 c.1.2.3 (A:1-206) Orot  30.6      16  0.0011   15.1   3.0  148   53-219    38-193 (206)
 22 d1y0ea_ c.1.2.5 (A:) Putative   27.1      18  0.0013   14.7   8.0   47  171-219   161-210 (222)
 23 d1jw9b_ c.111.1.1 (B:) Molybde  25.3      13 0.00091   15.7   1.3   71   48-120    76-148 (247)
 24 d1eepa_ c.1.5.1 (A:) Inosine m  24.8      20  0.0014   14.4   2.8   50  171-220   237-292 (388)
 25 d1yova1 c.111.1.2 (A:6-534) Am  23.9      20  0.0015   14.3   3.1   91   26-120    50-145 (529)
 26 d1o08a_ c.108.1.6 (A:) beta-Ph  23.7      21  0.0015   14.3   3.0   37  177-213   151-191 (221)
 27 d1km4a_ c.1.2.3 (A:) Orotidine  23.6      21  0.0015   14.3   3.0  152   53-219    41-200 (212)
 28 d1c0aa1 b.40.4.1 (A:1-106) Asp  23.1      12 0.00089   15.8   0.9   76   75-163     2-77  (106)
 29 d1ps9a1 c.1.4.1 (A:1-330) 2,4-  21.5      23  0.0017   14.0   6.3  102  114-216   203-315 (330)
 30 d1yxya1 c.1.2.5 (A:4-233) Puta  21.3      18  0.0013   14.6   1.5   42  177-220   175-219 (230)
 31 d1juba_ c.1.4.1 (A:) Dihydroor  20.8      23  0.0017   13.9   5.0   44  174-217   229-279 (311)

No 1  
>d1ct5a_ c.1.6.2 (A:) "Hypothetical" protein ybl036c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=100.00  E-value=0  Score=517.41  Aligned_cols=212  Identities=29%  Similarity=0.369  Sum_probs=194.1

Q ss_pred             HHHHHHHHHHHHHHHHHH--CCCCHHHCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEC
Q ss_conf             899999999999999998--198964418998718999999999997298100012100011110000012587302302
Q gi|254780801|r    3 LGNKLQVFKQKIENSAIL--AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG   80 (222)
Q Consensus         3 i~~nl~~i~~~I~~a~~~--~gR~~~~v~LiaVtK~~~~e~I~~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG   80 (222)
                      |..||+.|+++|+.+|+.  +||+|.+|+|||||||+|+++|+.+|++|+++|||||+||+.+|+..+++  +++|||||
T Consensus        13 i~~~~~~i~~~I~~~~~~~~~~r~~~~V~LiaVsK~~~~~~I~~~~~~G~~~fGENrvQE~~~K~~~l~~--~i~wHfIG   90 (244)
T d1ct5a_          13 LIAQYESVREVVNAEAKNVHVNENASKILLLVVSKLKPASDIQILYDHGVREFGENYVQELIEKAKLLPD--DIKWHFIG   90 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHTC-------CCEEEEECTTSCHHHHHHHHHHTCCEEEECCHHHHHHHHHHSCT--TCEEEECS
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCHHHCCHHHHHHHHCCCCCC--CEEEEEEC
T ss_conf             9999999999999998876538997866999998999999999999849861200404556542012322--01212224


Q ss_pred             CCCCCHHHHHCCCC--HHCCCCCCCCHHHHHHHHHHHHCC---CEEEEEEEECCCCCCCCCCCCC-HHHHHHHHH--HCC
Q ss_conf             44320013201110--000122222001344333333114---3036889700466563465700-012223443--104
Q gi|254780801|r   81 SLQSNKVSEIVSLF--DVIETVSREKTASLLSLEMIKQSR---FLPVYIQVNTGYEIQKSGIMPN-QTKDFVILC--RQK  152 (222)
Q Consensus        81 ~LQsNKvk~i~~~~--~~Ihsvds~~~a~~L~~~~~~~~~---~~~vliQVN~~~e~~K~G~~p~-el~~l~~~i--~~~  152 (222)
                      ||||||+|++++++  |+||||||++++++|++.+.+.++   +++||||||+++|++|+||.|+ ++.++++.+  ..+
T Consensus        91 ~LQsNKvk~i~~~~~~~~I~svds~kla~~l~~~~~~~~~~~~~~~~~iQVNi~~e~~KsG~~~~~~l~~~~~~~~~~~~  170 (244)
T d1ct5a_          91 GLQTNKCKDLAKVPNLYSVETIDSLKKAKKLNESRAKFQPDCNPILCNVQINTSHEDQKSGLNNEAEIFEVIDFFLSEEC  170 (244)
T ss_dssp             CCCGGGHHHHHHCTTEEEEEEECSHHHHHHHHHHHHHHCTTSCCEEEEEEBCCSSSCCSSSBCCHHHHHHHHHHHHSTTC
T ss_pred             CCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf             55512399999733643333100012046777887653113576226776513666666787957899999999999755


Q ss_pred             CCCCHHHHEECCCCCCC-----CHHHHHHHHHHHHHCC-----CCEECCCCCHHHHHHHHHCCCEEEECHHHCC
Q ss_conf             31100111011543345-----2058999999988758-----9472247773489999808988997113238
Q gi|254780801|r  153 YQLNVEGLMCIPPAMGN-----PKPHFYLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFG  216 (222)
Q Consensus       153 ~~L~i~GLMti~p~~~d-----~~~~F~~l~~l~~~~~-----~~~LSmGMS~D~~~Ai~~Gst~vRiGs~iFG  216 (222)
                      ++|+++|||||||...+     ++.+|..++++++++.     ..+||||||+||++||++|||||||||+|||
T Consensus       171 ~~l~l~GLM~i~p~~~~~~~~~~~~~F~~l~~l~~~l~~~~~~~~~LSMGMS~Dye~AI~~GsT~VRIGs~iFG  244 (244)
T d1ct5a_         171 KYIKLNGLMTIGSWNVSHEDSKENRDFATLVEWKKKIDAKFGTSLKLSMGMSADFREAIRQGTAEVRIGTDIFG  244 (244)
T ss_dssp             CSEEEEEEECCCCCC---------HHHHHHHHHHHHHHHHHCCCCEEECCCTTTHHHHHHTTCSEEEESHHHHC
T ss_pred             CCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHCCCCEEECCCHHCC
T ss_conf             62102054333467888034578899999999999983537997977175454699999879997984723109


No 2  
>d1vfsa2 c.1.6.1 (A:13-249) Alanine racemase {Streptomyces lavendulae [TaxId: 1914]}
Probab=99.58  E-value=1e-14  Score=117.22  Aligned_cols=205  Identities=15%  Similarity=0.129  Sum_probs=141.7

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHCEEEEECCC----CCHHHH-HHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECC
Q ss_conf             999999999999981989644189987189----999999-999972981000121000111100000125873023024
Q gi|254780801|r    7 LQVFKQKIENSAILAKRPKDSVSLVAVSKM----VDSKKI-RVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGS   81 (222)
Q Consensus         7 l~~i~~~I~~a~~~~gR~~~~v~LiaVtK~----~~~e~I-~~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~   81 (222)
                      |+.++.+++...+++   + ..+++||.|.    +....| +.+.++|++.||-..++|+.+-...-.+.   ..-..|.
T Consensus         2 L~al~~N~~~l~~~~---~-~~~i~aVVKAnAYGhG~~~ia~~l~~~g~~~f~Va~~~EA~~lR~~g~~~---~Il~l~~   74 (237)
T d1vfsa2           2 LDAVRANVRALRARA---P-RSALMAVVKSNAYGHGAVPCARAAQEAGAAWLGTATPEEALELRAAGIQG---RIMCWLW   74 (237)
T ss_dssp             HHHHHHHHHHHHTTS---T-TSEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEESSHHHHHHHHHTTCCS---EEEECCC
T ss_pred             HHHHHHHHHHHHHHC---C-CCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHCCCC---CEEECCC
T ss_conf             799999999999768---9-98299998131574779999999998699989874003488998704689---7200258


Q ss_pred             CCCCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHH---HHCCCCCCHH
Q ss_conf             4320013201110000122222001344333333114303688970046656346570001222344---3104311001
Q gi|254780801|r   82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL---CRQKYQLNVE  158 (222)
Q Consensus        82 LQsNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~---i~~~~~L~i~  158 (222)
                      +-..-+..++. .++..+|++...++.+...+.+.+++.+|.|+||+|  .+|.||.|+|+.++++.   +...++|++.
T Consensus        75 ~~~~~~~~~~~-~~i~~~i~s~~~l~~l~~~a~~~~~~~~vhLkiDTG--M~RlG~~~~e~~~l~~~~~~~~~~~~l~~~  151 (237)
T d1vfsa2          75 TPGGPWREAIE-TDIDVSVSGMWALDEVRAAARAAGRTARIQLKADTG--LGRNGCQPADWAELVGAAVAAQAEGTVQVT  151 (237)
T ss_dssp             CTTCCHHHHHH-TTCEEEECSHHHHHHHHHHHHHHTSCEEEEEEBCSS--CCSSSBCHHHHHHHHHHHHHHHHTTSEEEE
T ss_pred             CCHHHHHHHHH-HCCCCEECCHHHHHHHHHHHHHCCCCEEEEEEECCC--CCCCCCCHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             87278999997-234524341988999999999659972699985588--777788835789999998865306863265


Q ss_pred             HHEECCCCCCCCH-----HHHHHHHHH---HHHC--CCCEECCCCCHHHHHHHHHCCCEEEECHHHCCCCCCC
Q ss_conf             1101154334520-----589999999---8875--8947224777348999980898899711323899999
Q gi|254780801|r  159 GLMCIPPAMGNPK-----PHFYLLSEI---AREC--KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ  221 (222)
Q Consensus       159 GLMti~p~~~d~~-----~~F~~l~~l---~~~~--~~~~LSmGMS~D~~~Ai~~Gst~vRiGs~iFG~R~~~  221 (222)
                      |+||==+..+++.     .++..+.++   ..+.  .....|++.|.-.-..=+.--+|||+|-+|||--|.+
T Consensus       152 Gi~TH~a~ad~~~~~~~~~Q~~~F~~~~~~l~~~~~~~~~~h~aNS~~~~~~~~~~~d~vR~Gi~lYG~~P~~  224 (237)
T d1vfsa2         152 GVWSHFACADEPGHPSIRLQLDAFRDMLAYAEKEGVDPEVRHIANSPATLTLPETHFDLVRTGLAVYGVSPSP  224 (237)
T ss_dssp             EEECCCSSTTSTTCHHHHHHHHHHHHHHHHHHHTTCCCSEEEEECHHHHHHCGGGCSSEEEECGGGGTCCSCG
T ss_pred             EEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHCCCCCCCCEECCCHHHCCCCCCC
T ss_conf             5651202453112266899999999999999971899985895188999849976798767085005889787


No 3  
>d1bd0a2 c.1.6.1 (A:12-244) Alanine racemase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=99.55  E-value=4.5e-14  Score=112.96  Aligned_cols=202  Identities=15%  Similarity=0.138  Sum_probs=143.1

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCHHHCEEEEECCC----CCHHHHHH-HHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEE
Q ss_conf             8999999999999999981989644189987189----99999999-997298100012100011110000012587302
Q gi|254780801|r    3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKM----VDSKKIRV-ALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLR   77 (222)
Q Consensus         3 i~~nl~~i~~~I~~a~~~~gR~~~~v~LiaVtK~----~~~e~I~~-~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wH   77 (222)
                      |+.|++.+++.+          ++..+++||.|.    +....|.. ++++|++.||--+++|+..-...-.   +...-
T Consensus         6 l~~N~~~ir~~~----------~~~~~i~aVVKAnAYGhG~~~ia~~l~~~G~~~f~Va~i~EA~~LR~~g~---~~~Il   72 (233)
T d1bd0a2           6 IYDNVENLRRLL----------PDDTHIMAVVKANAYGHGDVQVARTALEAGASRLAVAFLDEALALREKGI---EAPIL   72 (233)
T ss_dssp             HHHHHHHHHHHS----------CTTCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEESSHHHHHHHHHTTC---CSCEE
T ss_pred             HHHHHHHHHHHC----------CCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHCC---CCEEE
T ss_conf             999999999848----------99896999972234758779999999965767431653020899998277---64473


Q ss_pred             EECCCCCCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCH-HHHHHHHHHCCCCCC
Q ss_conf             3024432001320111000012222200134433333311430368897004665634657000-122234431043110
Q gi|254780801|r   78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ-TKDFVILCRQKYQLN  156 (222)
Q Consensus        78 fIG~LQsNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~e-l~~l~~~i~~~~~L~  156 (222)
                      ..|.........++. .+.+.+|.+...++.++.. .+.+++.+|.|+||||  .+|.||.+++ +..++..+...+++.
T Consensus        73 vl~~~~~~~~~~~~~-~~i~~~v~~~~~~~~~~~~-~~~~~~~~vhLkvDTG--M~RlG~~~~e~~~~~~~~~~~~~~l~  148 (233)
T d1bd0a2          73 VLGASRPADAALAAQ-QRIALTVFRSDWLEEASAL-YSGPFPIHFHLKMDTG--MGRLGVKDEEETKRIVALIERHPHFV  148 (233)
T ss_dssp             ECSCCCGGGHHHHHH-TTEEEEECCHHHHHHHHHH-CCCSSCEEEEEEBCSS--SCSSSBCSHHHHHHHHHHHHHSTTEE
T ss_pred             ECCCCCCHHHHHHHH-CCCCCEEEHHHHHHHHHHH-HCCCCCEEEEEEECCC--CCCCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf             126876077887654-1464234369986556652-0357524789986256--66678984898999999985066642


Q ss_pred             HHHHEECCCCCCCC-----HHHHHHHHHHHHHCC--CCEECCCCCHHHHHHHHHCCCEEEECHHHCCCCCCC
Q ss_conf             01110115433452-----058999999988758--947224777348999980898899711323899999
Q gi|254780801|r  157 VEGLMCIPPAMGNP-----KPHFYLLSEIARECK--LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ  221 (222)
Q Consensus       157 i~GLMti~p~~~d~-----~~~F~~l~~l~~~~~--~~~LSmGMS~D~~~Ai~~Gst~vRiGs~iFG~R~~~  221 (222)
                      +.|+||==+..+++     ..+|..+.++.+.++  ...+|+.-|.-.-.--+..-+|||.|-+|||--|.+
T Consensus       149 i~Gi~THla~ad~~~~~~~~~q~~~f~~~~~~l~~~~~~~h~anSaa~l~~~~~~~d~vR~Gi~lYG~~p~~  220 (233)
T d1bd0a2         149 LEGLYTHFATADEVNTDYFSYQYTRFLHMLEWLPSRPPLVHCANSAASLRFPDRTFNMVRFGIAMYGLAPSP  220 (233)
T ss_dssp             EEEEECCCSSTTSSCCHHHHHHHHHHHHHHTTCSSCCSEEECCCHHHHHHCTTSCTTEEEECGGGGTCCSCG
T ss_pred             HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHCCCCCCCCEECCCCEEECCCCCC
T ss_conf             466531204777522047899999999999863265630400141998569855697877294207879888


No 4  
>d1rcqa2 c.1.6.1 (A:8-233) Alanine racemase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=99.47  E-value=2.7e-13  Score=107.71  Aligned_cols=187  Identities=16%  Similarity=0.141  Sum_probs=129.0

Q ss_pred             HCEEEEECCC----CCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHCCCCHHCCCCCC
Q ss_conf             4189987189----999999999972981000121000111100000125873023024432001320111000012222
Q gi|254780801|r   27 SVSLVAVSKM----VDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSR  102 (222)
Q Consensus        27 ~v~LiaVtK~----~~~e~I~~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQsNKvk~i~~~~~~Ihsvds  102 (222)
                      ..+++||.|-    +....|..+++.|++.||-..++|+.+-....... +| +=|-|.....-...++. .+.+-++.+
T Consensus        18 ~~~i~aVVKanAYGhG~~~va~~l~~g~~~faVa~~~Ea~~LR~~g~~~-~I-lvl~~~~~~~~~~~~~~-~~i~~~i~~   94 (226)
T d1rcqa2          18 GARALAVIKADAYGHGAVRCAEALAAEADGFAVACIEEGLELREAGIRQ-PI-LLLEGFFEASELELIVA-HDFWCVVHC   94 (226)
T ss_dssp             CSEEEEECHHHHHTTCHHHHHHHHTTTCSEEEESSHHHHHHHHHTTCCS-CE-EETTCCSSGGGHHHHHH-TTEEEEECS
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHCCHHHHHHCCCCC-CE-EEECCCCCHHHHHHHHH-CCCCCEECC
T ss_conf             9959999813356175999999999666611355410089999729998-55-87114687789999985-166615442


Q ss_pred             CCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEECCCCCCCC-----HHHHHHH
Q ss_conf             20013443333331143036889700466563465700012223443104311001110115433452-----0589999
Q gi|254780801|r  103 EKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP-----KPHFYLL  177 (222)
Q Consensus       103 ~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMti~p~~~d~-----~~~F~~l  177 (222)
                      ...++.+...  ..+++.+|.|+|+||  .+|.||.++|+.+++..+..++++++.|+||--+..+++     +.+...+
T Consensus        95 ~~~~~~~~~~--~~~~~~~vhlkiDTG--M~RlG~~~~e~~~~~~~~~~~~~l~~~gi~tHfa~ad~~~~~~~~~Q~~~F  170 (226)
T d1rcqa2          95 AWQLEAIERA--SLARPLNVWLKMDSG--MHRVGFFPEDFRAAHERLRASGKVAKIVMMSHFSRADELDCPRTEEQLAAF  170 (226)
T ss_dssp             HHHHHHHHHC--CCSSCEEEEEEBCSS--SCSSSBCHHHHHHHHHHHHHTTCEEEEEEECCCSSTTCTTCTHHHHHHHHH
T ss_pred             HHHHHHHHHH--HHCCCEEEEEEEECC--CCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             9999999997--412522689998346--432466858888888876413443300003543565410116899888999


Q ss_pred             HHHHHHCCCCEECCCCCHHHHHHHHHCCCEEEECHHHCCCCCCC
Q ss_conf             99988758947224777348999980898899711323899999
Q gi|254780801|r  178 SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ  221 (222)
Q Consensus       178 ~~l~~~~~~~~LSmGMS~D~~~Ai~~Gst~vRiGs~iFG~R~~~  221 (222)
                      .++.+.+.. .+|+--|.-.-..=+..-+|||+|.++||--|..
T Consensus       171 ~~~~~~~~~-~~h~aNSaa~l~~~~~~~d~vR~Gi~lYG~~P~~  213 (226)
T d1rcqa2         171 SAASQGLEG-EISLRNSPAVLGWPKVPSDWVRPGILLYGATPFE  213 (226)
T ss_dssp             HHHHTTCCS-CEECCCHHHHHHCTTSCCSEECCCGGGGTCCSSS
T ss_pred             HHHHHCCCC-CCCCCCCHHHHCCCCCCCCEECCCCEEECCCCCC
T ss_conf             999851123-5210377998779977898876082115839687


No 5  
>d1twia2 c.1.6.1 (A:50-313) Diaminopimelate decarboxylase LysA {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=97.68  E-value=0.00098  Score=43.39  Aligned_cols=183  Identities=11%  Similarity=0.056  Sum_probs=117.2

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHHH-HHHCCCCCCCCCCCHHHHHHHH-CCCCCCCCCEEEEC
Q ss_conf             899999999999999998198964418998718999999999-9972981000121000111100-00012587302302
Q gi|254780801|r    3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRV-ALSCGQVIFAENKLQEAKKKWI-PLRKEWDVQLRFIG   80 (222)
Q Consensus         3 i~~nl~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~~-~~~~G~~~fGENrvQE~~~K~~-~l~~~~~i~wHfIG   80 (222)
                      |++|+..+++..+......|.   ++.+.=..|.-|...|.. +.+.|. .|==.-..|+.--.. .++   +-+..|-|
T Consensus         5 i~~n~~~~~~af~~~~~~~g~---~~~i~YAvKaN~~~~vl~~l~~~G~-g~Dv~S~~El~~al~~G~~---~~~I~~~g   77 (264)
T d1twia2           5 IKINYNRYIEAFKRWEEETGK---EFIVAYAYKANANLAITRLLAKLGC-GADVVSGGELYIAKLSNVP---SKKIVFNG   77 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSC---CEEEEEEGGGCCCHHHHHHHHHTTC-EEEECSHHHHHHHHHTTCC---GGGEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHCCC---CEEEEEEECCCCCHHHHHHHHHCCC-CEEEECCCHHHHHHHCCCC---CCCCCCCC
T ss_conf             999999999999998885199---6699988456898999999998299-8056251489887641797---43344678


Q ss_pred             CCCCCHH-HHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECC------------CCCCCCCCCCCHHHHHHH
Q ss_conf             4432001-320111000012222200134433333311430368897004------------665634657000122234
Q gi|254780801|r   81 SLQSNKV-SEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG------------YEIQKSGIMPNQTKDFVI  147 (222)
Q Consensus        81 ~LQsNKv-k~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~------------~e~~K~G~~p~el~~l~~  147 (222)
                      +.-+... +.++..--..-++|+......+.+.+.+.+....+.+-+|.+            +..+|+|+.+++...+..
T Consensus        78 p~k~~~~i~~a~~~gv~~~~~ds~~el~~i~~~a~~~~~~~~v~~Ri~~~~~~~~~~~~~~~~~~skfG~~~~~~~~~~~  157 (264)
T d1twia2          78 NCKTKEEIIMGIEANIRAFNVDSISELILINETAKELGETANVAFRINPNVNPKTHPKISTGLKKNKFGLDVESGIAMKA  157 (264)
T ss_dssp             SSCCHHHHHHHHHTTCSEEEECSHHHHHHHHHHHHHHTCCEEEEEEEECCCCTTTCHHHHHHHHHSSCSEESTTSHHHHH
T ss_pred             CHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             54678888774323121000010578888888898709983211022457774445430145533456662777788999


Q ss_pred             --HHHCCCCCCHHHHEE-CCCCCCCCHHH---HHHHHHHHHH-----CCCCEECCC
Q ss_conf             --431043110011101-15433452058---9999999887-----589472247
Q gi|254780801|r  148 --LCRQKYQLNVEGLMC-IPPAMGNPKPH---FYLLSEIARE-----CKLTKLSMG  192 (222)
Q Consensus       148 --~i~~~~~L~i~GLMt-i~p~~~d~~~~---F~~l~~l~~~-----~~~~~LSmG  192 (222)
                        ...+.++|++.||=+ ++....|+...   ...+.++.++     ..+..|.+|
T Consensus       158 ~~~~~~~~~l~~~GlH~H~gS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiG  213 (264)
T d1twia2         158 IKMALEMEYVNVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEEGIEIEDVNLG  213 (264)
T ss_dssp             HHHHHHCSSEEEEEEECCCCSSBCCSHHHHHHHHHHHHHHHHHHHTTCCCSEEECC
T ss_pred             HHHHHHHCCCCCCCCEEEEHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf             99998731344344023201023442668999999999999999839986577613


No 6  
>d1hkva2 c.1.6.1 (A:46-310) Diaminopimelate decarboxylase LysA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=97.62  E-value=0.00037  Score=46.23  Aligned_cols=177  Identities=15%  Similarity=0.115  Sum_probs=112.8

Q ss_pred             HHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHH-HHHHHHCCCCCCCCCCCHHHHHH-HHCCCCCCCCCEEEECCCCCC
Q ss_conf             9999999999998198964418998718999999-99999729810001210001111-000001258730230244320
Q gi|254780801|r    8 QVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKK-IRVALSCGQVIFAENKLQEAKKK-WIPLRKEWDVQLRFIGSLQSN   85 (222)
Q Consensus         8 ~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~-I~~~~~~G~~~fGENrvQE~~~K-~~~l~~~~~i~wHfIG~LQsN   85 (222)
                      +.+++++++.....+   ..+++.-..|..|... ++.+.+.|. .|==--..|+..- ...++   +-+..|-|+.-+.
T Consensus         3 ~~lr~~~~~~~~af~---~~~~i~YA~KaN~~~~vl~~l~~~G~-g~dvaS~~El~~al~~G~~---~~~Ii~~gp~K~~   75 (265)
T d1hkva2           3 DDFRSRCRETAAAFG---SGANVHYAAKAFLCSEVARWISEEGL-CLDVCTGGELAVALHASFP---PERITLHGNNKSV   75 (265)
T ss_dssp             HHHHHHHHHHHHHTT---SGGGBEEEGGGSCCHHHHHHHHHHTC-EEEECSHHHHHHHHHTTCC---GGGEEECCSSCCH
T ss_pred             HHHHHHHHHHHHHCC---CCCEEEEEECCCCCHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCC---HHHHEECCCCCHH
T ss_conf             999999999998569---99869988633899999999997499-7598675159999982899---8992335521003


Q ss_pred             H-HHHHCCC-CHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEC------------CCCCCCCCCCCCHHHHH--HHHH
Q ss_conf             0-1320111-00001222220013443333331143036889700------------46656346570001222--3443
Q gi|254780801|r   86 K-VSEIVSL-FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNT------------GYEIQKSGIMPNQTKDF--VILC  149 (222)
Q Consensus        86 K-vk~i~~~-~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~------------~~e~~K~G~~p~el~~l--~~~i  149 (222)
                      . ++.++.. ..+| ++||+...++|.+.+.+.+...+|.+.+|.            ++..+|+|+.+++...+  +..+
T Consensus        76 ~~l~~Al~~gv~~i-~vDs~~El~~i~~~~~~~~~~~~v~lr~~p~~~~~~~~~~~~g~~~skFG~~~~~~~~~~~~~~~  154 (265)
T d1hkva2          76 SELTAAVKAGVGHI-VVDSMTEIERLDAIAGEAGIVQDVLVRLTVGVEAHTHEFISTAHEDQKFGLSVASGAAMAAVRRV  154 (265)
T ss_dssp             HHHHHHHHHTCCCE-EECSHHHHHHHHHHHHHHTCCEEEEEEEECSEEEEETEEEECSSCCSSSSEESTTSHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCC-CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             56788986385511-14542789999988652033423122333101244333110255334456523466789999999


Q ss_pred             HCCCCCCHHHHEE-CCCCCCCCHH-------HHHHHHHHHHH------CCCCEECCC
Q ss_conf             1043110011101-1543345205-------89999999887------589472247
Q gi|254780801|r  150 RQKYQLNVEGLMC-IPPAMGNPKP-------HFYLLSEIARE------CKLTKLSMG  192 (222)
Q Consensus       150 ~~~~~L~i~GLMt-i~p~~~d~~~-------~F~~l~~l~~~------~~~~~LSmG  192 (222)
                      ...+++++.||=. ++....++..       .+....++..+      ..+..|.+|
T Consensus       155 ~~~~~l~~~GlH~HvGSq~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~l~~ldiG  211 (265)
T d1hkva2         155 FATDHLRLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGEFGPEKTAQIATVDLG  211 (265)
T ss_dssp             HHCSSEEEEEEECCCEEEECCSHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCEEECC
T ss_pred             HHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf             861673266655541102344588999999999887767887788608886446545


No 7  
>d1f3ta2 c.1.6.1 (A:44-283) Eukaryotic ornithine decarboxylase {Trypanosoma brucei [TaxId: 5691]}
Probab=96.86  E-value=0.0076  Score=37.37  Aligned_cols=152  Identities=10%  Similarity=0.007  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHHH-HHHCCCCCCCCCCCHHHHHHH-HCCCCCCCCCEEEECCCCC
Q ss_conf             99999999999998198964418998718999999999-997298100012100011110-0000125873023024432
Q gi|254780801|r    7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRV-ALSCGQVIFAENKLQEAKKKW-IPLRKEWDVQLRFIGSLQS   84 (222)
Q Consensus         7 l~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~~-~~~~G~~~fGENrvQE~~~K~-~~l~~~~~i~wHfIG~LQs   84 (222)
                      |+.|.++.++-....    +.|++.=..|.-|...|.. +.++|.- |-=.-..|+..-. ..++   .=+..|-|+.-+
T Consensus         2 l~~i~~~~~~~~~~~----p~v~~~YA~KaN~~~~il~~l~~~g~g-~dv~S~~El~~al~~G~~---~~~Iif~g~~k~   73 (240)
T d1f3ta2           2 LGDIVRKHETWKKCL----PRVTPFYAVKCNDDWRVLGTLAALGTG-FDCASNTEIQRVRGIGVP---PEKIIYANPCKQ   73 (240)
T ss_dssp             HHHHHHHHHHHHHHC----TTEEEEEEGGGCCCHHHHHHHHHTTCE-EEECSHHHHHHHHHTTCC---GGGEEECCSSCC
T ss_pred             HHHHHHHHHHHHHHC----CCCEEEEEECCCCCHHHHHHHHHCCCC-EEECCCHHHHHHHHCCCC---CCCEEECCCCCH
T ss_conf             789999999999878----998798875017999999999986998-684251368999983899---642465065310


Q ss_pred             CH-HHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEE------CCCCCCCCCCCCCHHHHHHHHHHCCCCCCH
Q ss_conf             00-13201110000122222001344333333114303688970------046656346570001222344310431100
Q gi|254780801|r   85 NK-VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN------TGYEIQKSGIMPNQTKDFVILCRQKYQLNV  157 (222)
Q Consensus        85 NK-vk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN------~~~e~~K~G~~p~el~~l~~~i~~~~~L~i  157 (222)
                      .. ++.++..-..+.++||+...++|.+.+.    ..++.+-||      +++..+|+|+.++++.+++..+.+. ++++
T Consensus        74 ~~ei~~a~~~g~~~~~~ds~~el~~i~~~~~----~~~~~~ri~~~~~~~~~~~~~kFGi~~~~~~~~~~~~~~~-~~~l  148 (240)
T d1f3ta2          74 ISHIRYARDSGVDVMTFDCVDELEKVAKTHP----KAKMVLRISTDDSLARCRLSVKFGAKVEDCRFILEQAKKL-NIDV  148 (240)
T ss_dssp             HHHHHHHHHTTCCEEEECSHHHHHHHHHHCT----TCEEEEEBCC----------CCSCBCHHHHHHHHHHHHHT-TCEE
T ss_pred             HHHHHHHHHHCCCCEEEEEHHHHHHHHHHCC----CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC-CCCE
T ss_conf             5779999871245324421012555555335----5564422123222245566552013378999999987333-6645


Q ss_pred             HHHEE-CCCCCCCCH
Q ss_conf             11101-154334520
Q gi|254780801|r  158 EGLMC-IPPAMGNPK  171 (222)
Q Consensus       158 ~GLMt-i~p~~~d~~  171 (222)
                      .||=+ ++....++.
T Consensus       149 ~GlH~H~GS~~~~~~  163 (240)
T d1f3ta2         149 TGVSFHVGSGSTDAS  163 (240)
T ss_dssp             EEEECCCCSCCSCTH
T ss_pred             EEEEEEHHHCCCCHH
T ss_conf             666542222026889


No 8  
>d7odca2 c.1.6.1 (A:44-283) Eukaryotic ornithine decarboxylase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=95.98  E-value=0.04  Score=32.56  Aligned_cols=152  Identities=13%  Similarity=0.045  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHHH-HHHCCCCCCCCCCCHHHHHHH-HCCCCCCCCCEEEECCCCC
Q ss_conf             99999999999998198964418998718999999999-997298100012100011110-0000125873023024432
Q gi|254780801|r    7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRV-ALSCGQVIFAENKLQEAKKKW-IPLRKEWDVQLRFIGSLQS   84 (222)
Q Consensus         7 l~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~~-~~~~G~~~fGENrvQE~~~K~-~~l~~~~~i~wHfIG~LQs   84 (222)
                      |+.|.++..+--+.-   | .|++.=..|.-|...|.. +.+.|.- |==.-..|+..-. ..++   .=+..|-|+..+
T Consensus         2 l~~i~~~~~~~~~~~---p-~v~~~YA~KaN~~~~il~~l~~~G~g-~dv~S~~El~~a~~aG~~---~~~Iv~~g~~K~   73 (240)
T d7odca2           2 LGDILKKHLRWLKAL---P-RVTPFYAVKCNDSRAIVSTLAAIGTG-FDCASKTEIQLVQGLGVP---AERVIYANPCKQ   73 (240)
T ss_dssp             HHHHHHHHHHHHHHC---T-TEEEEEEGGGCCCHHHHHHHHHHTCE-EEECSHHHHHHHHHTTCC---GGGEEECCSSCC
T ss_pred             HHHHHHHHHHHHHHC---C-CCEEEEEECCCCCHHHHHHHHHCCCC-EEEECCHHHHHHHHCCCC---CCCEEECCCCCC
T ss_conf             789999999999868---9-98798885238989999999983998-176242689999844999---430374277520


Q ss_pred             C-HHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEC------CCCCCCCCCCCCHHHHHHHHHHCCCCCCH
Q ss_conf             0-0132011100001222220013443333331143036889700------46656346570001222344310431100
Q gi|254780801|r   85 N-KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNT------GYEIQKSGIMPNQTKDFVILCRQKYQLNV  157 (222)
Q Consensus        85 N-Kvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~------~~e~~K~G~~p~el~~l~~~i~~~~~L~i  157 (222)
                      . =++.++..--.+..+|+....+.+.+..    ...++.+.+|+      ++..+|+|+.++++..+++.+.. .++++
T Consensus        74 ~~~l~~a~~~g~~~~~~ds~~el~~i~~~~----~~~~v~~ri~~~~~~~~~~~~~kfG~~~~~~~~~~~~~~~-~~l~l  148 (240)
T d7odca2          74 VSQIKYAASNGVQMMTFDSEIELMKVARAH----PKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLLLERAKE-LNIDV  148 (240)
T ss_dssp             HHHHHHHHHTTCCEEEECSHHHHHHHHHHC----TTCEEEEEBCC-----------CCCBCHHHHHHHHHHHHH-TTCEE
T ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHC----CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCEE
T ss_conf             678999988633342210277889998746----6566542234455544367676653438999999998640-69468


Q ss_pred             HHHEE-CCCCCCCCH
Q ss_conf             11101-154334520
Q gi|254780801|r  158 EGLMC-IPPAMGNPK  171 (222)
Q Consensus       158 ~GLMt-i~p~~~d~~  171 (222)
                      .||=+ ++....++.
T Consensus       149 ~GlH~H~GSq~~~~~  163 (240)
T d7odca2         149 IGVSFHVGSGCTDPD  163 (240)
T ss_dssp             EEEECCCCSSCCCTH
T ss_pred             EEECCCCCCCCCCHH
T ss_conf             761100010343288


No 9  
>d1knwa2 c.1.6.1 (A:32-278) Diaminopimelate decarboxylase LysA {Escherichia coli [TaxId: 562]}
Probab=95.88  E-value=0.07  Score=30.89  Aligned_cols=171  Identities=15%  Similarity=0.149  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHH-HHHHCCCCCCCCCCCHHHHHH-HHCCCCC-CCCCEEEECCCC
Q ss_conf             9999999999999819896441899871899999999-999729810001210001111-0000012-587302302443
Q gi|254780801|r    7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIR-VALSCGQVIFAENKLQEAKKK-WIPLRKE-WDVQLRFIGSLQ   83 (222)
Q Consensus         7 l~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~-~~~~~G~~~fGENrvQE~~~K-~~~l~~~-~~i~wHfIG~LQ   83 (222)
                      ++.|+++++..     |..+  .+.=..|..|...|. .+.+.|. .|-=.-..|+..- ...++.. ..-+--|-|+.-
T Consensus         2 ~~~ir~~~~~l-----~~~~--~v~YA~KaN~~~~vl~~l~~~G~-g~dv~S~~El~~al~~G~~~~~~~~~Ii~~g~~k   73 (247)
T d1knwa2           2 AQIIRRQIAAL-----KQFD--VVRFAQKACSNIHILRLMREQGV-KVDSVSLGEIERALAAGYNPQTHPDDIVFTADVI   73 (247)
T ss_dssp             HHHHHHHHHTT-----TTSS--EEEEEGGGCCCHHHHHHHHHTTC-EEEECSHHHHHHHHHTTCCTTTCTTSEEEEESCC
T ss_pred             HHHHHHHHHHH-----CCCC--EEEEEECCCCCHHHHHHHHHCCC-CEEEECHHHHHHHHHHCCCCCCCHHHEEECCCCC
T ss_conf             79999999970-----3789--89997101898999999998499-7898299999999980777556754525327731


Q ss_pred             C-CHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEC------------CCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             2-00132011100001222220013443333331143036889700------------4665634657000122234431
Q gi|254780801|r   84 S-NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNT------------GYEIQKSGIMPNQTKDFVILCR  150 (222)
Q Consensus        84 s-NKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~------------~~e~~K~G~~p~el~~l~~~i~  150 (222)
                      + .-+++++.+--.| .+||+...++|.+.+    +..++.|.||.            ++..+|+|+.++++..+++.+.
T Consensus        74 ~~~~l~~a~~~~~~i-~~ds~~el~~l~~~~----~~~~i~lRinp~~~~~~~~~~~~~~~~sKFG~~~~~~~~~~~~~~  148 (247)
T d1knwa2          74 DQATLERVSELQIPV-NAGSVDMLDQLGQVS----PGHRVWLRVNPGFGHGHSQKTNTGGENSKHGIWYTDLPAALDVIQ  148 (247)
T ss_dssp             CHHHHHHHHHHTCCE-EESSHHHHHHHHHHS----TTCEEEEEEECSCCSSCTTSCCSSSTTCCCSEEGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH-CHHHHHHHHHHHHHC----CCCHHHEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             046899999876330-101467899998642----311232023236444455433332222455544022245656655


Q ss_pred             CCCCCCHHHHEE-CCCCCCCCHHHHHHHHHHHHH-----CCCCEECCC
Q ss_conf             043110011101-154334520589999999887-----589472247
Q gi|254780801|r  151 QKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIARE-----CKLTKLSMG  192 (222)
Q Consensus       151 ~~~~L~i~GLMt-i~p~~~d~~~~F~~l~~l~~~-----~~~~~LSmG  192 (222)
                       ..++++.||-+ ++....+ ...+..+..+.+.     ..+..|.+|
T Consensus       149 -~~~~~l~GlH~HigSq~~~-~~~~~~~~~~~~~~~~~g~~~~~ldiG  194 (247)
T d1knwa2         149 -RHHLQLVGIHMHIGSGVDY-AHLEQVCGAMVRQVIEFGQDLQAISAG  194 (247)
T ss_dssp             -HTTCEEEEEECCCCCTTCH-HHHHHHHHHHHHHHHHHTCCCSEEECC
T ss_pred             -HCCCCEEEEHHCCCCCCHH-HHHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf             -2155032202124765204-678999999888886305775188756


No 10 
>d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]}
Probab=87.27  E-value=0.65  Score=24.39  Aligned_cols=68  Identities=21%  Similarity=0.345  Sum_probs=44.2

Q ss_pred             CCCCCHHHHEECCCCCCC---CHHHHHHHHHHH---HHCCC---CEECCCCCH-HHHHHHHHCCCEEEECHHHCCCCC
Q ss_conf             431100111011543345---205899999998---87589---472247773-489999808988997113238999
Q gi|254780801|r  152 KYQLNVEGLMCIPPAMGN---PKPHFYLLSEIA---RECKL---TKLSMGMTR-DFELAIASGATSVRIGSGIFGERP  219 (222)
Q Consensus       152 ~~~L~i~GLMti~p~~~d---~~~~F~~l~~l~---~~~~~---~~LSmGMS~-D~~~Ai~~Gst~vRiGs~iFG~R~  219 (222)
                      ++.+...-+||+.|-..-   ....+.+.++++   ++.+.   -+.==|.+. -....++.|++.+=+||+||+.-+
T Consensus       138 l~~vD~VllM~V~PGf~GQ~f~~~~~~kI~~~~~~~~~~~~~~~I~vDGGIn~~~i~~l~~~Gad~~V~GS~if~~~d  215 (230)
T d1rpxa_         138 LDAVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAPD  215 (230)
T ss_dssp             TTTCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCCTTTHHHHHHHTCCEEEESHHHHTSSC
T ss_pred             HHHCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCC
T ss_conf             965798999873688642001356689999987777753773489998776899999999769999998869878999


No 11 
>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]}
Probab=83.92  E-value=0.45  Score=25.44  Aligned_cols=154  Identities=12%  Similarity=-0.047  Sum_probs=72.8

Q ss_pred             CCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHCCCCHH--CCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECC
Q ss_conf             000121000111100000125873023024432001320111000--012222200134433333311430368897004
Q gi|254780801|r   52 IFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDV--IETVSREKTASLLSLEMIKQSRFLPVYIQVNTG  129 (222)
Q Consensus        52 ~fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQsNKvk~i~~~~~~--Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~  129 (222)
                      .||..-++++++......-..+...|-||....+.....  .+|+  +|........+.+.+.+.+.+.  .+.+..+..
T Consensus        39 ~~G~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~--gad~vtvh~~~g~~~~~~~~~~~~~~~~--~~~v~~~~~  114 (213)
T d1q6oa_          39 GEGVRAVRDLKALYPHKIVLADAKIADAGKILSRMCFEA--NADWVTVICCADINTAKGALDVAKEFNG--DVQIELTGY  114 (213)
T ss_dssp             HHCTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHT--TCSEEEEETTSCHHHHHHHHHHHHHTTC--EEEEEECSC
T ss_pred             CCCHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHC--CCCEEEEECCCCCHHHHHHHHHHHHCCC--CEECCCCCC
T ss_conf             589899999998545556046776145157888999980--9999998035781689999999997198--201265899


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEECCCCC---CCCHHHHHHHHHHHHHCCCCEECCCCC-HHHHHHHHHCC
Q ss_conf             66563465700012223443104311001110115433---452058999999988758947224777-34899998089
Q gi|254780801|r  130 YEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYLLSEIARECKLTKLSMGMT-RDFELAIASGA  205 (222)
Q Consensus       130 ~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMti~p~~---~d~~~~F~~l~~l~~~~~~~~LSmGMS-~D~~~Ai~~Gs  205 (222)
                      ..       .+...++......  .  +...|+..+..   ..........+......-.-.-.-|.+ ++.+.|++.|+
T Consensus       115 ~~-------~~~~~~~~~~~~~--~--~~~~~~~~~g~~~~~~~~~~l~~i~~~~~~~~~i~~~gGi~~~~~~~~~~~Ga  183 (213)
T d1q6oa_         115 WT-------WEQAQQWRDAGIG--Q--VVYHRSRDAQAAGVAWGEADITAIKRLSDMGFKVTVTGGLALEDLPLFKGIPI  183 (213)
T ss_dssp             CC-------HHHHHHHHHTTCC--E--EEEECCHHHHHTTCCCCHHHHHHHHHHHHTTCEEEEESSCCGGGGGGGTTSCC
T ss_pred             CC-------HHHHHHHHHHHHH--H--HHHHHHCCCCCCCEECCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHCCC
T ss_conf             99-------9999999986788--9--89887024685886577889999998625586183388868589999998699


Q ss_pred             CEEEECHHHCCCCCC
Q ss_conf             889971132389999
Q gi|254780801|r  206 TSVRIGSGIFGERPC  220 (222)
Q Consensus       206 t~vRiGs~iFG~R~~  220 (222)
                      ..+=|||+||++.++
T Consensus       184 d~iVVGr~I~~a~dp  198 (213)
T d1q6oa_         184 HVFIAGRSIRDAASP  198 (213)
T ss_dssp             SEEEESHHHHTSSCH
T ss_pred             CEEEECHHHCCCCCH
T ss_conf             999988242689999


No 12 
>d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]}
Probab=83.14  E-value=1.1  Score=22.74  Aligned_cols=68  Identities=16%  Similarity=0.263  Sum_probs=44.0

Q ss_pred             CCCCHHHHEECCCCC-CC--CHHHHHHHHHHHH---HCCC---CEECCCCCHH-HHHHHHHCCCEEEECHHHCCCCCC
Q ss_conf             311001110115433-45--2058999999988---7589---4722477734-899998089889971132389999
Q gi|254780801|r  153 YQLNVEGLMCIPPAM-GN--PKPHFYLLSEIAR---ECKL---TKLSMGMTRD-FELAIASGATSVRIGSGIFGERPC  220 (222)
Q Consensus       153 ~~L~i~GLMti~p~~-~d--~~~~F~~l~~l~~---~~~~---~~LSmGMS~D-~~~Ai~~Gst~vRiGs~iFG~R~~  220 (222)
                      +.+...=+||+.|-. +.  ....+.+.+++++   +.+.   -+.==|.+.+ ....++.|++.+=.||+||+.-++
T Consensus       131 ~~~d~vlvM~V~pG~~GQ~f~~~~~~ki~~l~~~~~~~~~~~~I~VDGGIn~~~i~~l~~~Gad~~V~GS~if~~~d~  208 (221)
T d1tqja_         131 PVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVFNAPNY  208 (221)
T ss_dssp             GGCSEEEEESSCC----CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCCTTTTHHHHHHTCCEEEESHHHHTSSCH
T ss_pred             HHHCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCH
T ss_conf             331189999864788874220015799999886542036533799977768898999998699999989588689999


No 13 
>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]}
Probab=82.23  E-value=1.1  Score=22.90  Aligned_cols=69  Identities=17%  Similarity=0.244  Sum_probs=43.1

Q ss_pred             CCCCCHHHHEECCCCCCC---CHHHHHHHHHHHH---HCCCC---EECCCCCH-HHHHHHHHCCCEEEECHHHCCCCCC
Q ss_conf             431100111011543345---2058999999988---75894---72247773-4899998089889971132389999
Q gi|254780801|r  152 KYQLNVEGLMCIPPAMGN---PKPHFYLLSEIAR---ECKLT---KLSMGMTR-DFELAIASGATSVRIGSGIFGERPC  220 (222)
Q Consensus       152 ~~~L~i~GLMti~p~~~d---~~~~F~~l~~l~~---~~~~~---~LSmGMS~-D~~~Ai~~Gst~vRiGs~iFG~R~~  220 (222)
                      ++.+...=+||+.|-...   ....+.+.+++++   +-+..   +..=|.+. .....++.|++.+=+||+||+.-.+
T Consensus       127 l~~id~vliM~V~pG~~Gq~f~~~~~~ki~~l~~~~~~~~~~~~I~vDGGIn~~~i~~l~~aGad~~V~Gsaif~~~d~  205 (217)
T d2flia1         127 LDLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDNKTIRACYEAGANVFVAGSYLFKASDL  205 (217)
T ss_dssp             TTTCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEESSCCTTTHHHHHHHTCCEEEESHHHHTSSCH
T ss_pred             HHHCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCH
T ss_conf             7640878999976765544210024788988888887509974899927878888999998799999974488579999


No 14 
>d1eixa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Escherichia coli [TaxId: 562]}
Probab=76.97  E-value=2.1  Score=21.03  Aligned_cols=156  Identities=13%  Similarity=0.185  Sum_probs=76.9

Q ss_pred             CCCCCCHHHHHHHHCCCCCCCCCEEEECCC---CCCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEE--E
Q ss_conf             001210001111000001258730230244---32001320111000012222200134433333311430368897--0
Q gi|254780801|r   53 FAENKLQEAKKKWIPLRKEWDVQLRFIGSL---QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV--N  127 (222)
Q Consensus        53 fGENrvQE~~~K~~~l~~~~~i~wHfIG~L---QsNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQV--N  127 (222)
                      +|..-+.++.+.  .+.=..|.++|=||+.   |...+...-..+-.+|++.-....+.+.+.+.+.++...+++-|  .
T Consensus        42 ~G~~~i~~l~~~--~~~if~D~K~~DI~nt~~~~~~~~~~~~~~~~tvh~~~g~~~l~~~~~~~~~~~~~~~~~~~v~~~  119 (231)
T d1eixa_          42 FGPQFVRELQQR--GFDIFLDLKFHDIPNTAAHAVAAAADLGVWMVNVHASGGARMMTAAREALVPFGKDAPLLIAVTVL  119 (231)
T ss_dssp             HHHHHHHHHHHT--TCCEEEEEEECSCHHHHHHHHHHHHHHTCSEEEEBGGGCHHHHHHHHHTTGGGGGGCCEEEEECSC
T ss_pred             CCHHHHHHHHHC--CCHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEEEC
T ss_conf             489999999854--825047667605857788888865316631799963672888889987664037654278997530


Q ss_pred             CCCCC---CCCCCCCCHHHHHHHHHH-CCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHCCCCEECCC------CCHH-
Q ss_conf             04665---634657000122234431-043110011101154334520589999999887589472247------7734-
Q gi|254780801|r  128 TGYEI---QKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMG------MTRD-  196 (222)
Q Consensus       128 ~~~e~---~K~G~~p~el~~l~~~i~-~~~~L~i~GLMti~p~~~d~~~~F~~l~~l~~~~~~~~LSmG------MS~D-  196 (222)
                      ++.+.   ...|... .......... ......+.|+-+- |     .+. ..++.... ..+..++=|      -.+| 
T Consensus       120 ts~~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~-~-----~~~-~~~~~~~~-~~~~~~tPGI~~~~~~~~dq  190 (231)
T d1eixa_         120 TSMEASDLVDLGMTL-SPADYAERLAALTQKCGLDGVVCS-A-----QEA-VRFKQVFG-QEFKLVTPGIRPQGSEAGDQ  190 (231)
T ss_dssp             TTCCHHHHHTTTCCS-CHHHHHHHHHHHHHHTTCSEEECC-G-----GGH-HHHHHHHC-SSSEEEECCBCCTTCCCTTC
T ss_pred             CCCCCCHHCCCCCCC-CHHHHHHHHHHHHHHHCCCCCCCC-C-----HHH-HHHHHHCC-CCCCEECCCCCCCCCCCCCC
T ss_conf             212210000000135-425899998989887321221221-0-----012-34443037-76522368846688875675


Q ss_pred             -----HHHHHHHCCCEEEECHHHCCCCC
Q ss_conf             -----89999808988997113238999
Q gi|254780801|r  197 -----FELAIASGATSVRIGSGIFGERP  219 (222)
Q Consensus       197 -----~~~Ai~~Gst~vRiGs~iFG~R~  219 (222)
                           -+.|++.||+.+=||++|.++.+
T Consensus       191 ~r~~tp~~Ai~~GaD~iIVGR~It~a~d  218 (231)
T d1eixa_         191 RRIMTPEQALSAGVDYMVIGRPVTQSVD  218 (231)
T ss_dssp             CSCBCHHHHHHTTCSEEEECHHHHTSSS
T ss_pred             CCCCCHHHHHHCCCCEEEECCCCCCCCC
T ss_conf             2017999999869999998973358999


No 15 
>d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]}
Probab=74.93  E-value=2.8  Score=20.15  Aligned_cols=74  Identities=18%  Similarity=0.323  Sum_probs=48.9

Q ss_pred             HHHHHCCCCCCHHHHEECCCCCC-C--CHHHHHHHHHHHHHCCCCE--ECCCCCH-HHHHHHHHCCCEEEECHHHCCCCC
Q ss_conf             34431043110011101154334-5--2058999999988758947--2247773-489999808988997113238999
Q gi|254780801|r  146 VILCRQKYQLNVEGLMCIPPAMG-N--PKPHFYLLSEIARECKLTK--LSMGMTR-DFELAIASGATSVRIGSGIFGERP  219 (222)
Q Consensus       146 ~~~i~~~~~L~i~GLMti~p~~~-d--~~~~F~~l~~l~~~~~~~~--LSmGMS~-D~~~Ai~~Gst~vRiGs~iFG~R~  219 (222)
                      ...+..++.+....+|++.|-.. .  ....+.+.+++++...-..  .==|.+. -....++.|++.+=+||+||+.-.
T Consensus       125 ~~~l~~~~~~d~vlim~v~PG~~GQ~f~~~~l~kI~~l~~~~~~~~I~VDGGIn~~~i~~l~~aGad~~V~GS~if~~~d  204 (220)
T d1h1ya_         125 FPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGPSTIDVAASAGANCIVAGSSIFGAAE  204 (220)
T ss_dssp             HHHHHSSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTSEEEEESSCSTTTHHHHHHHTCCEEEESHHHHTSSC
T ss_pred             HHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECHHHHCCCC
T ss_conf             77774235665688871479986444300466799999862897629999257999999999879999997879978999


No 16 
>d1vqta1 c.1.2.3 (A:1-198) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Thermotoga maritima [TaxId: 2336]}
Probab=59.59  E-value=3.9  Score=19.12  Aligned_cols=140  Identities=14%  Similarity=0.122  Sum_probs=68.7

Q ss_pred             CCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHCCC-CHH--CCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCC
Q ss_conf             0121000111100000125873023024432001320111-000--0122222001344333333114303688970046
Q gi|254780801|r   54 AENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSL-FDV--IETVSREKTASLLSLEMIKQSRFLPVYIQVNTGY  130 (222)
Q Consensus        54 GENrvQE~~~K~~~l~~~~~i~wHfIG~LQsNKvk~i~~~-~~~--Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~  130 (222)
                      |-+-+.++.++  .++=..|.++|=||+--.+-++.+.++ +|+  ||+..-.+-++...+   ..++  .++.-.-++ 
T Consensus        35 G~~~i~~l~~~--~~~IflDlK~~DIpnTv~~~v~~~~~~g~d~itvH~~~G~~~l~~a~~---~~~~--~~l~Vt~Lt-  106 (198)
T d1vqta1          35 GKKIFDELAKR--NLKIILDLKFCDIPSTVERSIKSWDHPAIIGFTVHSCAGYESVERALS---ATDK--HVFVVVKLT-  106 (198)
T ss_dssp             CTHHHHHHHTT--TCEEEEEEEECSCHHHHHHHHHHHCCTTEEEEEEEGGGCHHHHHHHHH---HCSS--EEEEECCCT-
T ss_pred             CHHHHHHHHHC--CCCEEEEEHHCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHH---HCCC--CCEEEEEEE-
T ss_conf             49999999977--994998810137628999999998604663799974675025667665---1123--202578750-


Q ss_pred             CCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHCCCCEECCCC-----CHH-----HHHH
Q ss_conf             656346570001222344310431100111011543345205899999998875894722477-----734-----8999
Q gi|254780801|r  131 EIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGM-----TRD-----FELA  200 (222)
Q Consensus       131 e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMti~p~~~d~~~~F~~l~~l~~~~~~~~LSmGM-----S~D-----~~~A  200 (222)
                        +-+|.    +.+....+..+..+.+.|+.+ +|          ....+.+++....++=|-     ++|     -..|
T Consensus       107 --S~~~~----~~~~~~~~~~l~~~g~~~vv~-~~----------~~~~~~~~~~~~iitPGIr~~~~~dDQkr~~t~~a  169 (198)
T d1vqta1         107 --SMEGS----LEDYMDRIEKLNKLGCDFVLP-GP----------WAKALREKIKGKILVPGIRMEVKADDQKDVVTLEE  169 (198)
T ss_dssp             --TSCCC----HHHHHHHHHHHHHHTCEEECC-HH----------HHHHHTTTCCSCEEECCBC---------CCBCHHH
T ss_pred             --CCCCC----HHHHHHHHHHHHHHCCCCCCC-CC----------HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf             --34553----278899999999843475656-61----------45555330222200542155777788054158999


Q ss_pred             HHHCCCEEEECHHHCCCC
Q ss_conf             980898899711323899
Q gi|254780801|r  201 IASGATSVRIGSGIFGER  218 (222)
Q Consensus       201 i~~Gst~vRiGs~iFG~R  218 (222)
                      ++.||+.+=||+.|..+-
T Consensus       170 i~~GAd~iVVGR~It~s~  187 (198)
T d1vqta1         170 MKGIANFAVLGREIYLSE  187 (198)
T ss_dssp             HTTTCSEEEESHHHHTSS
T ss_pred             HHCCCCEEEECCCCCCCC
T ss_conf             984999999897556899


No 17 
>d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]}
Probab=57.14  E-value=6.1  Score=17.84  Aligned_cols=67  Identities=21%  Similarity=0.342  Sum_probs=44.5

Q ss_pred             CCCCHHHHEECCCCCC-C--CHHHHHHHHHHHHHCC-CC-EECCCCCH-HHHHHHHHCCCEEEECHHHCCCCC
Q ss_conf             3110011101154334-5--2058999999988758-94-72247773-489999808988997113238999
Q gi|254780801|r  153 YQLNVEGLMCIPPAMG-N--PKPHFYLLSEIARECK-LT-KLSMGMTR-DFELAIASGATSVRIGSGIFGERP  219 (222)
Q Consensus       153 ~~L~i~GLMti~p~~~-d--~~~~F~~l~~l~~~~~-~~-~LSmGMS~-D~~~Ai~~Gst~vRiGs~iFG~R~  219 (222)
                      ..+...=+|++.|-.. .  ....+.+.+++++... +. +.==|.+. -.+...+.|++.+=.||+||+.-+
T Consensus       134 ~~~d~vlim~V~pG~~GQ~f~~~~l~KI~~lr~~~~~~~I~VDGGIn~~~i~~l~~aGad~iV~GS~if~~~d  206 (221)
T d1tqxa_         134 NLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYKNLNIQVDGGLNIETTEISASHGANIIVAGTSIFNAED  206 (221)
T ss_dssp             TCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTCEEEEESSCCHHHHHHHHHHTCCEEEESHHHHTCSS
T ss_pred             CCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCC
T ss_conf             4456899986313454312475126788899873678434897366887699999769999997859878999


No 18 
>d1to3a_ c.1.10.1 (A:) Putative aldolase YihT {Salmonella typhimurium [TaxId: 90371]}
Probab=50.92  E-value=7.6  Score=17.19  Aligned_cols=109  Identities=11%  Similarity=0.038  Sum_probs=60.0

Q ss_pred             CHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCC-CCHHHHHHHHHHCCCCCCHHHHEECCCCCC--CCHHHHHHHHHH
Q ss_conf             00134433333311430368897004665634657-000122234431043110011101154334--520589999999
Q gi|254780801|r  104 KTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM-PNQTKDFVILCRQKYQLNVEGLMCIPPAMG--NPKPHFYLLSEI  180 (222)
Q Consensus       104 ~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~-p~el~~l~~~i~~~~~L~i~GLMti~p~~~--d~~~~F~~l~~l  180 (222)
                      ..++++..+|.+.+  +++++++=+-+.+...+.. |+.+...+...   ..+-+.=+-+=-|...  ...+....+..+
T Consensus       140 ~~~~~l~~~c~~~g--lp~llE~l~~~~~~~~~~~~~~~i~~a~r~~---~e~GaDi~K~~~p~~~~~~~~~~~~~~~~~  214 (291)
T d1to3a_         140 NMVKEFNELCHSNG--LLSIIEPVVRPPRCGDKFDREQAIIDAAKEL---GDSGADLYKVEMPLYGKGARSDLLTASQRL  214 (291)
T ss_dssp             HHHHHHHHHHHTTT--CEEEEEEEECCCSSCSCCCHHHHHHHHHHHH---TTSSCSEEEECCGGGGCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCC--CCCEEEEEECCCCCCCCCCHHHHHHHHHHHH---HHCCCCEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf             99999999999739--9616898744888654443188899999999---864883799856887205567789988888


Q ss_pred             HHHCC--CCEECCCCCHH-----HHHHHHHCCCEEEECHHHCCC
Q ss_conf             88758--94722477734-----899998089889971132389
Q gi|254780801|r  181 ARECK--LTKLSMGMTRD-----FELAIASGATSVRIGSGIFGE  217 (222)
Q Consensus       181 ~~~~~--~~~LSmGMS~D-----~~~Ai~~Gst~vRiGs~iFG~  217 (222)
                      .+...  .-.||.|.+.|     ++.|.+.|+.=+=+|++||..
T Consensus       215 ~~~~~~p~vvLs~G~~~~~f~~~l~~A~~aGa~G~~~GR~iw~~  258 (291)
T d1to3a_         215 NGHINMPWVILSSGVDEKLFPRAVRVAMEAGASGFLAGRAVWSS  258 (291)
T ss_dssp             HHTCCSCEEECCTTSCTTTHHHHHHHHHHTTCCEEEESHHHHGG
T ss_pred             HHCCCCCEEEEECCCCHHHHHHHHHHHHHCCCEEEEECHHHHHC
T ss_conf             60489858999089898999999999997799099857464348


No 19 
>d1dbta_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Bacillus subtilis [TaxId: 1423]}
Probab=47.80  E-value=3.9  Score=19.17  Aligned_cols=155  Identities=14%  Similarity=0.155  Sum_probs=73.9

Q ss_pred             CCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHCCC-CHH--CCCCCCCCHHHHHHHHHHHH----CCCEEEEE
Q ss_conf             000121000111100000125873023024432001320111-000--01222220013443333331----14303688
Q gi|254780801|r   52 IFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSL-FDV--IETVSREKTASLLSLEMIKQ----SRFLPVYI  124 (222)
Q Consensus        52 ~fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQsNKvk~i~~~-~~~--Ihsvds~~~a~~L~~~~~~~----~~~~~vli  124 (222)
                      .+|..-+.++++..  ++=..|.++|=||+.-..-++.+..+ +|+  +|.+.-....+.....+.+.    ++...++.
T Consensus        41 ~~G~~~i~~l~~~~--~~IflD~K~~DIgnTv~~~~~~~~~~~~d~vtvh~~~G~~~i~aa~~~~~~~~~~~~~~~~l~~  118 (237)
T d1dbta_          41 QEGPSIVKQLKERN--CELFLDLKLHDIPTTVNKAMKRLASLGVDLVNVHAAGGKKMMQAALEGLEEGTPAGKKRPSLIA  118 (237)
T ss_dssp             HHTHHHHHHHHHTT--CEEEEEEEECSCHHHHHHHHHHHHTTTCSEEEEEGGGCHHHHHHHHHHHHHHSCTTSCCCEEEE
T ss_pred             HCCHHHHHHHHHCC--HHEEHHHHHCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHCCCCCEEEE
T ss_conf             15979999987505--2102101433575378888876532365567751455458999999865420100256650688


Q ss_pred             EEECCCCCC-----CCCCCCCHHHHHHHHH-HCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHCC--CCEECCC----
Q ss_conf             970046656-----3465700012223443-104311001110115433452058999999988758--9472247----
Q gi|254780801|r  125 QVNTGYEIQ-----KSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK--LTKLSMG----  192 (222)
Q Consensus       125 QVN~~~e~~-----K~G~~p~el~~l~~~i-~~~~~L~i~GLMti~p~~~d~~~~F~~l~~l~~~~~--~~~LSmG----  192 (222)
                      =..++.-.+     ..|.... ..+.+... .......+.|+.|=|-   +       +..+++...  +..++=|    
T Consensus       119 v~~lts~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~g~~g~v~s~~---~-------~~~~r~~~~~~~~ivtPGI~~~  187 (237)
T d1dbta_         119 VTQLTSTSEQIMKDELLIEKS-LIDTVVHYSKQAEESGLDGVVCSVH---E-------AKAIYQAVSPSFLTVTPGIRMS  187 (237)
T ss_dssp             ECSCTTCCHHHHHHTSCBCSC-HHHHHHHHHHHHHHTTCSEEECCGG---G-------HHHHTTTSCTTCEEEECCBCCT
T ss_pred             EECCCCCCHHHHHHHHHHHCC-CCHHHHHHHHHHHHCCCCEEECCHH---H-------HHHHCCCCCCCEEEECCCCCCC
T ss_conf             741466562889865432045-2124379887566429514420203---4-------4431122213035761364457


Q ss_pred             -C-CHH------HHHHHHHCCCEEEECHHHCCCCC
Q ss_conf             -7-734------89999808988997113238999
Q gi|254780801|r  193 -M-TRD------FELAIASGATSVRIGSGIFGERP  219 (222)
Q Consensus       193 -M-S~D------~~~Ai~~Gst~vRiGs~iFG~R~  219 (222)
                       . .+|      -..|++.||+.+=||++|..+.+
T Consensus       188 ~~~~~dq~r~~tp~~a~~~GaD~iIVGR~I~~s~d  222 (237)
T d1dbta_         188 EDAANDQVRVATPAIAREKGSSAIVVGRSITKAED  222 (237)
T ss_dssp             TSCCTTCSSCBCHHHHHHTTCSEEEECHHHHTSSC
T ss_pred             CCCCCCCEEECCHHHHHHCCCCEEEECCCCCCCCC
T ss_conf             77778966328999999869999998984558999


No 20 
>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=32.72  E-value=14  Score=15.33  Aligned_cols=141  Identities=13%  Similarity=0.017  Sum_probs=78.7

Q ss_pred             CCCHHHHHHHHHCCCCCCCCCCCHHHHHHH-HCCCCCCCCCEEEECC-----CCCCHHHHHCCCCHHC-CCCCCCCHHHH
Q ss_conf             999999999997298100012100011110-0000125873023024-----4320013201110000-12222200134
Q gi|254780801|r   36 MVDSKKIRVALSCGQVIFAENKLQEAKKKW-IPLRKEWDVQLRFIGS-----LQSNKVSEIVSLFDVI-ETVSREKTASL  108 (222)
Q Consensus        36 ~~~~e~I~~~~~~G~~~fGENrvQE~~~K~-~~l~~~~~i~wHfIG~-----LQsNKvk~i~~~~~~I-hsvds~~~a~~  108 (222)
                      -...+++.+++..|..+.=|-...+...+. ...+..++-..||+-+     -..+-.+.++..+|+| -+|-..+....
T Consensus        78 d~d~~~v~~~~~~g~~~i~~p~l~~~v~~~~~~~~~~~~~~~~~~~pEe~Gv~v~~d~~Eav~~ADiII~~vP~~~~v~~  157 (242)
T d2b0ja2          78 EFDPKEVMEAHLSGNPESIMPKIREVVKAKAKELPKPPKACIHLVHPEDVGLKVTSDDREAVEGADIVITWLPKGNKQPD  157 (242)
T ss_dssp             CSCHHHHHHHHHTTCGGGTHHHHHHHHHHHHHTSCCTTTEEEESSCGGGGTCEEESCHHHHHTTCSEEEECCTTCTTHHH
T ss_pred             ECCHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHCCCCCCCHHHCCCHHHCCCEEECCHHHHHHCCCEEEEEEECHHHHHH
T ss_conf             48889999998558921212018999999987366886203312798888988979899997268868995116899999


Q ss_pred             HHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEECCCCCC----------CCHHHHHHHH
Q ss_conf             433333311430368897004665634657000122234431043110011101154334----------5205899999
Q gi|254780801|r  109 LSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG----------NPKPHFYLLS  178 (222)
Q Consensus       109 L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMti~p~~~----------d~~~~F~~l~  178 (222)
                      +-+.....-++-.++  ++.+      -+.+....++.+.+.. .++++.+.+-|++...          -..+.|.++.
T Consensus       158 Vi~~I~~~l~~g~Ii--id~S------Ti~~~~~~~l~e~l~~-kgi~vi~~hp~a~pe~~g~~li~~~~aseE~iekv~  228 (242)
T d2b0ja2         158 IIKKFADAIPEGAIV--THAC------TIPTTKFAKIFKDLGR-EDLNITSYHPGCVPEMKGQVYIAEGYASEEAVNKLY  228 (242)
T ss_dssp             HHHHHGGGSCTTCEE--EECS------SSCHHHHHHHHHHTTC-TTSEEEECBCSSCTTTCCCEEEEESSSCHHHHHHHH
T ss_pred             HHHHHHHHCCCCCEE--EECC------CCCHHHHHHHHHHCCC-CCCEEECCCCCCCCCCCCCEEEECCCCCHHHHHHHH
T ss_conf             999999648999689--9658------7868999999986043-798898788537676456369941778999999999


Q ss_pred             HHHHHCC
Q ss_conf             9988758
Q gi|254780801|r  179 EIARECK  185 (222)
Q Consensus       179 ~l~~~~~  185 (222)
                      ++.+..+
T Consensus       229 elles~G  235 (242)
T d2b0ja2         229 EIGKIAR  235 (242)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHC
T ss_conf             9999979


No 21 
>d2czda1 c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Pyrococcus horikoshii [TaxId: 53953]}
Probab=30.62  E-value=16  Score=15.10  Aligned_cols=148  Identities=14%  Similarity=0.122  Sum_probs=66.8

Q ss_pred             CCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHCC-CCHH--CCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECC
Q ss_conf             0012100011110000012587302302443200132011-1000--012222200134433333311430368897004
Q gi|254780801|r   53 FAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVS-LFDV--IETVSREKTASLLSLEMIKQSRFLPVYIQVNTG  129 (222)
Q Consensus        53 fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQsNKvk~i~~-~~~~--Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~  129 (222)
                      +|-.-+.++.++. .++=..|+++|=||+-=..-++.+.+ .+|+  ||........+..    .+...   .++-.-++
T Consensus        38 ~G~~~i~~l~~~~-~~~if~DlK~~Di~~t~~~~~~~~~~~gad~~Tvh~~~g~~~i~~~----~~~~~---~~~~~~~s  109 (206)
T d2czda1          38 SGVDIIRRLKEET-GVEIIADLKLADIPNTNRLIARKVFGAGADYVIVHTFVGRDSVMAV----KELGE---IIMVVEMS  109 (206)
T ss_dssp             HCTTHHHHHHHHH-CCEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESTTCHHHHHHH----HTTSE---EEEECCCC
T ss_pred             CCHHHHHHHHHHC-CCEEEEEEEEEEECCCCHHEEHHHCCCCCCEEEEEECCCHHHHHHH----HHCCC---CEEEEECC
T ss_conf             4988999999855-9828977545330463100001111544417876400338888776----52266---44787315


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHCC--CCEECCC--C-CHHHHHHHHHC
Q ss_conf             66563465700012223443104311001110115433452058999999988758--9472247--7-73489999808
Q gi|254780801|r  130 YEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK--LTKLSMG--M-TRDFELAIASG  204 (222)
Q Consensus       130 ~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMti~p~~~d~~~~F~~l~~l~~~~~--~~~LSmG--M-S~D~~~Ai~~G  204 (222)
                      ... ...+ .+++.+.+..+...  ....|+-+.+..   +    ..+..+++.+.  +..+.=|  . .++-+.|++.|
T Consensus       110 ~~~-~~~~-~~~~~~~~~~~a~~--~~~~g~~~~~~~---~----~~~~~~r~~~~~~~~i~~pGI~~~~~~~~~ai~~G  178 (206)
T d2czda1         110 HPG-ALEF-INPLTDRFIEVANE--IEPFGVIAPGTR---P----ERIGYIRDRLKEGIKILAPGIGAQGGKAKDAVKAG  178 (206)
T ss_dssp             SGG-GGTT-TGGGHHHHHHHHHH--HCCSEEECCCSS---T----HHHHHHHHHSCTTCEEEECCCCSSTTHHHHHHHHT
T ss_pred             CCC-CCCC-CCHHHHHHHHHHHH--CCCCCCCCCCCC---C----HHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHC
T ss_conf             776-4210-14799999999974--233455444457---1----36666665422565377787134689999999809


Q ss_pred             CCEEEECHHHCCCCC
Q ss_conf             988997113238999
Q gi|254780801|r  205 ATSVRIGSGIFGERP  219 (222)
Q Consensus       205 st~vRiGs~iFG~R~  219 (222)
                      |+.+=+||+|+++.+
T Consensus       179 ad~iVvGR~I~~a~d  193 (206)
T d2czda1         179 ADYIIVGRAIYNAPN  193 (206)
T ss_dssp             CSEEEECHHHHTSSS
T ss_pred             CCEEEECHHHCCCCC
T ss_conf             999998946615899


No 22 
>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}
Probab=27.08  E-value=18  Score=14.70  Aligned_cols=47  Identities=15%  Similarity=0.303  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHCCCCE-ECCCCC--HHHHHHHHHCCCEEEECHHHCCCCC
Q ss_conf             058999999988758947-224777--3489999808988997113238999
Q gi|254780801|r  171 KPHFYLLSEIARECKLTK-LSMGMT--RDFELAIASGATSVRIGSGIFGERP  219 (222)
Q Consensus       171 ~~~F~~l~~l~~~~~~~~-LSmGMS--~D~~~Ai~~Gst~vRiGs~iFG~R~  219 (222)
                      ...+..++++.+....+. -+-|.+  .|...+++.|++-|=|||+|.  ||
T Consensus       161 ~~~~~~i~~~~~~~~iPVia~GGI~t~~d~~~~~~~GAdgV~iGsAi~--rp  210 (222)
T d1y0ea_         161 QNDFQFLKDVLQSVDAKVIAEGNVITPDMYKRVMDLGVHCSVVGGAIT--RP  210 (222)
T ss_dssp             HHHHHHHHHHHHHCCSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHH--CH
T ss_pred             HHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHC--CH
T ss_conf             648999999973578858986898999999999986999999831116--99


No 23 
>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}
Probab=25.33  E-value=13  Score=15.74  Aligned_cols=71  Identities=10%  Similarity=0.186  Sum_probs=46.2

Q ss_pred             CCCCCCCCCCCHHHHHHHHCCCCCCCCCEE-EECCCCCCHHHHHCCCCH-HCCCCCCCCHHHHHHHHHHHHCCCE
Q ss_conf             298100012100011110000012587302-302443200132011100-0012222200134433333311430
Q gi|254780801|r   48 CGQVIFAENKLQEAKKKWIPLRKEWDVQLR-FIGSLQSNKVSEIVSLFD-VIETVSREKTASLLSLEMIKQSRFL  120 (222)
Q Consensus        48 ~G~~~fGENrvQE~~~K~~~l~~~~~i~wH-fIG~LQsNKvk~i~~~~~-~Ihsvds~~~a~~L~~~~~~~~~~~  120 (222)
                      +...++|.++++.+.++...+..  ++.-. +...+-+.-.......+| +|...|+......++..+.+.+++.
T Consensus        76 ~~~~diG~~K~~~a~~~l~~~np--~~~i~~~~~~~~~~~~~~~~~~~divid~~d~~~~~~~in~~~~~~~ip~  148 (247)
T d1jw9b_          76 HSDATVGQPKVESARDALTRINP--HIAITPVNALLDDAELAALIAEHDLVLDCTDNVAVRNQLNAGCFAAKVPL  148 (247)
T ss_dssp             CCGGGTTSBHHHHHHHHHHHHCT--TSEEEEECSCCCHHHHHHHHHTSSEEEECCSSHHHHHHHHHHHHHHTCCE
T ss_pred             CCHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCC
T ss_conf             64765293479888888887410--22102144553220110113231045402422555336779999819986


No 24 
>d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]}
Probab=24.79  E-value=20  Score=14.42  Aligned_cols=50  Identities=28%  Similarity=0.482  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHC---CCCEECCC---CCHHHHHHHHHCCCEEEECHHHCCCCCC
Q ss_conf             05899999998875---89472247---7734899998089889971132389999
Q gi|254780801|r  171 KPHFYLLSEIAREC---KLTKLSMG---MTRDFELAIASGATSVRIGSGIFGERPC  220 (222)
Q Consensus       171 ~~~F~~l~~l~~~~---~~~~LSmG---MS~D~~~Ai~~Gst~vRiGs~iFG~R~~  220 (222)
                      .+.|....+.++..   ..+.++.|   -|+|.--|+.+||+.|=+|+.+=|.-..
T Consensus       237 ~pq~sai~~~~~~~~~~~vpiIADGGi~~~Gdi~KAla~GAd~VMlG~~lAg~~Es  292 (388)
T d1eepa_         237 VPQITAICDVYEACNNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKES  292 (388)
T ss_dssp             CCHHHHHHHHHHHHTTSSCEEEEESCCCSHHHHHHHHHHTCSEEEECHHHHTBTTS
T ss_pred             CCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCEEEEEEECCCEEECCHHHHCCCCC
T ss_conf             42388999999986157715785366673773013678515503405365413678


No 25 
>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.89  E-value=20  Score=14.31  Aligned_cols=91  Identities=19%  Similarity=0.177  Sum_probs=55.1

Q ss_pred             HHCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEC----CCCCCHHHHHCCCCHH-CCCC
Q ss_conf             4418998718999999999997298100012100011110000012587302302----4432001320111000-0122
Q gi|254780801|r   26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG----SLQSNKVSEIVSLFDV-IETV  100 (222)
Q Consensus        26 ~~v~LiaVtK~~~~e~I~~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG----~LQsNKvk~i~~~~~~-Ihsv  100 (222)
                      .+++|+= -.....+++-.-+-+...++|.+|++.+.++..++..  ++.++.+-    .++.+ ....+..+|+ |-+.
T Consensus        50 g~itivD-~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~lNp--~v~i~~~~~~~~~~~~~-~~~~~~~~dvVv~~~  125 (529)
T d1yova1          50 GSFTIID-GNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNS--DVSGSFVEESPENLLDN-DPSFFCRFTVVVATQ  125 (529)
T ss_dssp             SEEEEEC-CSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHTTCT--TSBCCEESSCHHHHHHS-CGGGGGGCSEEEEES
T ss_pred             CEEEEEC-CCCCCHHHCCCHHCCCHHHCCCHHHHHHHHHHHHHCC--CCCEEEECCCCHHHHHH-HHHHHCCCCEEEECC
T ss_conf             8899985-9968966658201579455787999999999998689--99579973770134443-798856899999899


Q ss_pred             CCCCHHHHHHHHHHHHCCCE
Q ss_conf             22200134433333311430
Q gi|254780801|r  101 SREKTASLLSLEMIKQSRFL  120 (222)
Q Consensus       101 ds~~~a~~L~~~~~~~~~~~  120 (222)
                      |+......|+..+.+.+.+.
T Consensus       126 ~~~~~~~~l~~~c~~~~ip~  145 (529)
T d1yova1         126 LPESTSLRLADVLWNSQIPL  145 (529)
T ss_dssp             CCHHHHHHHHHHHHHHTCCE
T ss_pred             CCHHHHHHHHHHHHHCCCCE
T ss_conf             99999999999999829999


No 26 
>d1o08a_ c.108.1.6 (A:) beta-Phosphoglucomutase {Lactococcus lactis [TaxId: 1358]}
Probab=23.71  E-value=21  Score=14.29  Aligned_cols=37  Identities=14%  Similarity=0.226  Sum_probs=24.6

Q ss_pred             HHHHHHHCCC---CEECCCCC-HHHHHHHHHCCCEEEECHH
Q ss_conf             9999887589---47224777-3489999808988997113
Q gi|254780801|r  177 LSEIARECKL---TKLSMGMT-RDFELAIASGATSVRIGSG  213 (222)
Q Consensus       177 l~~l~~~~~~---~~LSmGMS-~D~~~Ai~~Gst~vRiGs~  213 (222)
                      +....+.+++   ..|-.|=| .|.+.|-..|-+-|-|++.
T Consensus       151 ~~~~l~~~~i~~~~~l~VgD~~~di~~A~~aG~~~i~v~~~  191 (221)
T d1o08a_         151 FIAAAHAVGVAPSESIGLEDSQAGIQAIKDSGALPIGVGRP  191 (221)
T ss_dssp             HHHHHHHTTCCGGGEEEEESSHHHHHHHHHHTCEEEEESCH
T ss_pred             HHHHHHHCCCCCCEEEEEECCHHHHHHHHHCCCEEEEECCH
T ss_conf             88889873988740799966988899999869989999981


No 27 
>d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=23.63  E-value=21  Score=14.28  Aligned_cols=152  Identities=12%  Similarity=0.045  Sum_probs=73.0

Q ss_pred             CCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHCC-CCH--HCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECC
Q ss_conf             0012100011110000012587302302443200132011-100--0012222200134433333311430368897004
Q gi|254780801|r   53 FAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVS-LFD--VIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG  129 (222)
Q Consensus        53 fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQsNKvk~i~~-~~~--~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~  129 (222)
                      +|-.-++++.++.. ++=..|.++|=||+.=..=++.+.+ .+|  .||+.-.....+...+.+.+.++.  +++=..++
T Consensus        41 ~G~~~v~~l~~~~~-~~i~~D~K~~DIg~t~~~~~~~~~~~gad~~TVh~~~g~~~i~~~~~~a~~~~~~--~~~l~~~s  117 (212)
T d1km4a_          41 EGMDIIAEFRKRFG-CRIIADFAVADIPETNEKICRATFKAGADAIIVHGFPGADSVRACLNVAEEMGRE--VFLLTEMS  117 (212)
T ss_dssp             HCTHHHHHHHHHHC-CEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESTTCHHHHHHHHHHHHHHTCE--EEEECSCS
T ss_pred             CCHHHHHHHHHHCC-CCEEHHHHHHCCCCHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCC--CCCCHHHC
T ss_conf             29999999987466-4265333560244388876764303455478774118968899999999841974--32220001


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHCC--CCEECCCC---CHHHHHHHHHC
Q ss_conf             66563465700012223443104311001110115433452058999999988758--94722477---73489999808
Q gi|254780801|r  130 YEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK--LTKLSMGM---TRDFELAIASG  204 (222)
Q Consensus       130 ~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMti~p~~~d~~~~F~~l~~l~~~~~--~~~LSmGM---S~D~~~Ai~~G  204 (222)
                      .... .-+......+++....+   ..+.|+-+.+       .+...++.+++..+  +-.++=|-   .+|-..++ .|
T Consensus       118 ~~~~-~~~~~~~~~~~~~~~~~---~g~~g~v~~~-------~~~~~i~~ir~~~~~~~~~vtpGI~~~g~~~~d~~-~~  185 (212)
T d1km4a_         118 HPGA-EMFIQGAADEIARMGVD---LGVKNYVGPS-------TRPERLSRLREIIGQDSFLISPGVGAQGGDPGETL-RF  185 (212)
T ss_dssp             SGGG-GTTHHHHHHHHHHHHHH---HTCCEEECCT-------TCHHHHHHHHHHHCSSSEEEECCBSTTSBCHHHHT-TT
T ss_pred             CHHH-HHHHHHHHHHHHHHHHH---HCCCCCCCCC-------CCHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHH-HH
T ss_conf             2045-54332478999999988---3876421345-------67777765654058751687676335889988997-31


Q ss_pred             CCEEEECHHHCCCCC
Q ss_conf             988997113238999
Q gi|254780801|r  205 ATSVRIGSGIFGERP  219 (222)
Q Consensus       205 st~vRiGs~iFG~R~  219 (222)
                      ++.+=|||+|+++.+
T Consensus       186 ad~iIvGR~I~~a~d  200 (212)
T d1km4a_         186 ADAIIVGRSIYLADN  200 (212)
T ss_dssp             CSEEEECHHHHTSSS
T ss_pred             CCEEEECCHHCCCCC
T ss_conf             999998902044989


No 28 
>d1c0aa1 b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]}
Probab=23.07  E-value=12  Score=15.83  Aligned_cols=76  Identities=13%  Similarity=0.182  Sum_probs=47.0

Q ss_pred             CEEEECCCCCCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf             30230244320013201110000122222001344333333114303688970046656346570001222344310431
Q gi|254780801|r   75 QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQ  154 (222)
Q Consensus        75 ~wHfIG~LQsNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~  154 (222)
                      +-|++|.|+.+.+.+-+...-|||++-..+-..-+.-+ ..     ...+|+-+..+.       .+..+++..+...+-
T Consensus         2 Rth~cgeL~~~~~g~~V~v~GWv~~~R~~g~i~Fi~LR-D~-----~G~~Q~v~~~~~-------~~~~~~~~~l~~Es~   68 (106)
T d1c0aa1           2 RTEYCGQLRLSHVGQQVTLCGWVNRRRDLGSLIFIDMR-DR-----EGIVQVFFDPDR-------ADALKLASELRNEFC   68 (106)
T ss_dssp             CSSCGGGCCGGGTTCEEEEEEEEEEEEECSSCEEEEEE-ET-----TEEEEEEECGGG-------HHHHHHHTTCCTTCE
T ss_pred             CCEECCCCCHHHCCCEEEEEEEEEEEEECCCCEEEEEE-CC-----CEEEEEEECCCC-------HHHHHHHHHHCCCCE
T ss_conf             84382218957999989999999875528983999998-59-----757758952540-------467899976170006


Q ss_pred             CCHHHHEEC
Q ss_conf             100111011
Q gi|254780801|r  155 LNVEGLMCI  163 (222)
Q Consensus       155 L~i~GLMti  163 (222)
                      +.+.|...-
T Consensus        69 v~V~G~V~~   77 (106)
T d1c0aa1          69 IQVTGTVRA   77 (106)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEC
T ss_conf             998727751


No 29 
>d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=21.54  E-value=23  Score=14.01  Aligned_cols=102  Identities=12%  Similarity=0.126  Sum_probs=58.3

Q ss_pred             HHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCC--CCCCHHHHEE---CCCCC-CCCHHHHHHH-HHHHHHCCC
Q ss_conf             331143036889700466563465700012223443104--3110011101---15433-4520589999-999887589
Q gi|254780801|r  114 IKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK--YQLNVEGLMC---IPPAM-GNPKPHFYLL-SEIARECKL  186 (222)
Q Consensus       114 ~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~--~~L~i~GLMt---i~p~~-~d~~~~F~~l-~~l~~~~~~  186 (222)
                      ...+....+.+-++.. |..+.|..+++..++++.+.+.  .-+.+.+-+.   .+... ..+...|..+ +.++.....
T Consensus       203 ~~vg~d~~v~~R~s~~-d~~~~g~~~~~~~~~~~~l~~~g~d~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~  281 (330)
T d1ps9a1         203 ERVGNDFIIIYRLSML-DLVEDGGTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHVSL  281 (330)
T ss_dssp             HHHCSSSEEEEEEEEE-CCSTTCCCHHHHHHHHHHHHHHTCSEEEEEECBTTCSSCSSSTTSCTTTTHHHHHHHTTSCSS
T ss_pred             HHCCCCCEEEECCCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf             9738876057515610-014688888999999999998500022112465444323347777620679999999864796


Q ss_pred             CEECCCCCHH---HHHHHHHC-CCEEEECHHHCC
Q ss_conf             4722477734---89999808-988997113238
Q gi|254780801|r  187 TKLSMGMTRD---FELAIASG-ATSVRIGSGIFG  216 (222)
Q Consensus       187 ~~LSmGMS~D---~~~Ai~~G-st~vRiGs~iFG  216 (222)
                      +.+.-|.-.|   -+.+|++| +.+|=+|+.+..
T Consensus       282 pvi~~G~i~~~~~ae~~l~~g~~D~V~~gR~~ia  315 (330)
T d1ps9a1         282 PLVTTNRINDPQVADDILSRGDADMVSMARPFLA  315 (330)
T ss_dssp             CEEECSSCCSHHHHHHHHHTTSCSEEEESTHHHH
T ss_pred             EEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf             1999699898999999998799661576299986


No 30 
>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}
Probab=21.33  E-value=18  Score=14.63  Aligned_cols=42  Identities=17%  Similarity=0.233  Sum_probs=29.4

Q ss_pred             HHHHHHHCCCCEE-CCCCC--HHHHHHHHHCCCEEEECHHHCCCCCC
Q ss_conf             9999887589472-24777--34899998089889971132389999
Q gi|254780801|r  177 LSEIARECKLTKL-SMGMT--RDFELAIASGATSVRIGSGIFGERPC  220 (222)
Q Consensus       177 l~~l~~~~~~~~L-SmGMS--~D~~~Ai~~Gst~vRiGs~iFG~R~~  220 (222)
                      ..........+.+ .-|-+  .|...|++.|+.-|=|||+|.  ||.
T Consensus       175 ~~~~~~~~~ipvia~GGI~t~~d~~~al~~GAd~V~vGsAi~--~p~  219 (230)
T d1yxya1         175 LIEALCKAGIAVIAEGKIHSPEEAKKINDLGVAGIVVGGAIT--RPK  219 (230)
T ss_dssp             HHHHHHHTTCCEEEESCCCSHHHHHHHHTTCCSEEEECHHHH--CHH
T ss_pred             HHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEECHHHC--CHH
T ss_conf             999873379829974899999999999986999999892434--989


No 31 
>d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]}
Probab=20.76  E-value=23  Score=13.90  Aligned_cols=44  Identities=23%  Similarity=0.304  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHCC--CCEECCC--CCH-HHHHHHHHCCCEEEECHHHC--CC
Q ss_conf             999999988758--9472247--773-48999980898899711323--89
Q gi|254780801|r  174 FYLLSEIARECK--LTKLSMG--MTR-DFELAIASGATSVRIGSGIF--GE  217 (222)
Q Consensus       174 F~~l~~l~~~~~--~~~LSmG--MS~-D~~~Ai~~Gst~vRiGs~iF--G~  217 (222)
                      ....+++++..+  ++....|  +|+ |....+..||+.|-++|+++  |+
T Consensus       229 l~~i~~i~~~~~~~~~Iig~GGI~s~~Da~~~i~aGA~~Vql~tal~~~Gp  279 (311)
T d1juba_         229 LANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHKEGP  279 (311)
T ss_dssp             HHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHCT
T ss_pred             HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCCEEEEHHHHHCCH
T ss_conf             999999997418973688517838999999999849990365175674091


Done!