RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780801|ref|YP_003065214.1| hypothetical protein
CLIBASIA_03460 [Candidatus Liberibacter asiaticus str. psy62]
(222 letters)
>1ct5_A Protein (yeast hypothetical protein, selenoMet); TIM barrel,
pyridoxal-5'-phosphate, selenomethionine, MAD,
structural genomics, PSI; HET: PLP; 2.00A {Saccharomyces
cerevisiae} (A:)
Length = 256
Score = 130 bits (328), Expect = 1e-31
Identities = 55/231 (23%), Positives = 85/231 (36%), Gaps = 18/231 (7%)
Query: 7 LQVFKQKIENSAILA--KRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
+ ++ + A + L+ VSK+ + I++ G F EN +QE +K
Sbjct: 18 YESVREVVNAEAKNVHVNENASKILLLVVSKLKPASDIQILYDHGVREFGENYVQELIEK 77
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL---EMIKQSRFLP 121
L + K V +ET+ K A L+ + +
Sbjct: 78 AKLLPDDIKWHFIGGLQTNKCKDLAKVPNLYSVETIDSLKKAKKLNESRAKFQPDCNPIL 137
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFV---ILCRQKYQLNVEGLMCIPPAMGNP-----KPH 173
+Q+NT +E QKSG+ V L + + + GL I +
Sbjct: 138 CNVQINTSHEDQKSGLNNEAEIFEVIDFFLSEECKYIKLNGLXTIGSWNVSHEDSKENRD 197
Query: 174 FYLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
F L E ++ KLS G + DF AI G VRIG+ IFG RP
Sbjct: 198 FATLVEWKKKIDAKFGTSLKLSXGXSADFREAIRQGTAEVRIGTDIFGARP 248
>3kw3_A Alanine racemase; niaid, ssgcid, seattle structural genomics
center for infectious disease, iodide SOAK, LLP,
CAT-scratch disease; HET: LLP; 2.04A {Bartonella
henselae} (A:27-241)
Length = 215
Score = 114 bits (287), Expect = 7e-27
Identities = 29/219 (13%), Positives = 70/219 (31%), Gaps = 11/219 (5%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKI-RVALSCGQVIFAENKLQEAKKKW 65
++ A + S + A + + + KI G F +++EA +
Sbjct: 1 VRAIVANYRTLAQHVAPTECSAVVXANAYGLGAHKIAPALYQAGCRTFFVAQIEEALQLK 60
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
+ + + + +K E V+ +I ++ T K+++ P IQ
Sbjct: 61 ---AVLPENVMIALLNGFPHKAEEFVAQSGIIPLLNSWSTIEDWQTLCQKKNKKFPAIIQ 117
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY-----LLSEI 180
V+T + G+ + + + + ++ ++ + +
Sbjct: 118 VDTNM--SRLGLDKKELQKLIKNPTIFEKAEIKYILSHLANGEDASHSSNNKQLAAFKRV 175
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ K+S + L VR G ++G P
Sbjct: 176 LAQLPTCKVSFANSGGIFLGSDFYFDLVRPGIALYGVDP 214
>3cpg_A Uncharacterized protein; unknown protein, TIM barrel,
monomer, structural genomics, PSI-2, protein structure
initiative; 1.71A {Bifidobacterium adolescentis
ATCC15703} (A:)
Length = 282
Score = 104 bits (260), Expect = 1e-23
Identities = 64/244 (26%), Positives = 95/244 (38%), Gaps = 31/244 (12%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
+ +I + A R SV L+A +K D +I A+ G EN+ QE K
Sbjct: 29 VHRVLDRIAAAEEQAGREAGSVRLLAATKTRDIGEIXAAIDAGVRXIGENRPQEVTAKAE 88
Query: 67 PLRK----------EWDVQLR---------FIGSLQSNKVSEIVSLFDVIETVSREKTAS 107
L + IG LQSNK+ +++ + D IE+V A
Sbjct: 89 GLARRCAERGFSLGVAGAAPDAAAEHIPFHLIGQLQSNKIGKVLPVVDTIESVDSIDLAE 148
Query: 108 LLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM 167
+S + + + V ++VN E KSG P + ++GL I +
Sbjct: 149 KISRRAVARGITVGVLLEVNESGEESKSGCDPAHAIRIAQKIGTLDGIELQGLXTIGAHV 208
Query: 168 GNPKPH---FYLLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ F L + +LS G T D ELAIA G+T VR+G+ IF
Sbjct: 209 HDETVIRRGFSHLRKTRDLILASGEPGTDRCRELSXGXTGDXELAIAEGSTIVRVGTAIF 268
Query: 216 GERP 219
GER
Sbjct: 269 GERA 272
>2vd8_A Alanine racemase; pyridoxal 5'-phosphate, peptidoglycan
synthesis, PLP, OPPF, L-alanine, isomerase, D- alanine,
pyridoxal phosphate; HET: MLY LLP; 1.47A {Bacillus
anthracis} PDB: 2vd9_A* (A:19-239)
Length = 221
Score = 101 bits (253), Expect = 6e-23
Identities = 31/220 (14%), Positives = 57/220 (25%), Gaps = 21/220 (9%)
Query: 15 ENSAILAKRPKDSVSLVAVSKMVDSKK-----IRVALSCGQVIFAENKLQEAKKKWIPLR 69
N + + V + AV +AL G A L EA R
Sbjct: 5 NNVTHIXEFIPSDVEIFAVVXGNAYGHDYVPVAXIALEAGATRLAVAFLDEALVLR---R 61
Query: 70 KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG 129
+ +G ++ DV TV + + S + +I ++G
Sbjct: 62 AGITAPILVLGPSPPRDINVAAE-NDVALTVFQXEWVDEAIXLWDGSST-MXYHINFDSG 119
Query: 130 YEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH-----FYLLSEIAREC 184
+ + F+ L +EG+ + + E
Sbjct: 120 -MGRIGIRERXELXGFLXSLEGAPFLELEGVYTHFATADEVETSYFDXQYNTFLEQLSWL 178
Query: 185 -----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ + +VRIG ++G P
Sbjct: 179 XEFGVDPXFVHTANSAATLRFQGITFNAVRIGIAMYGLSP 218
>1w8g_A YGGS, hypothetical UPF0001 protein YGGS; structural
genomics, hypothetical protein, putative enzyme with
PLP-binding domain; HET: PLP ICT; 2.0A {Escherichia
coli} (A:)
Length = 234
Score = 101 bits (252), Expect = 7e-23
Identities = 71/223 (31%), Positives = 106/223 (47%), Gaps = 10/223 (4%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L + KI +A R + ++L+AVSK + I A+ GQ F EN +QE K
Sbjct: 8 LAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEGVDKIR 67
Query: 67 PLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
++ ++ FIG LQSNK + FD T+ R + A+ L+ + + L V I
Sbjct: 68 HFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAELPPLNVLI 127
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC 184
Q+N E KSGI + + + +L + GLM IP F + ++A
Sbjct: 128 QINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVARQMAVAF 187
Query: 185 --------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 188 AGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARD 230
>3llx_A Predicted amino acid aldolase or racemase; structural
genomics, joint center for structural genomics, JCSG,
protein structure initiative; HET: LLP TRS; 1.50A
{Idiomarina loihiensis} (A:22-239)
Length = 218
Score = 96.4 bits (239), Expect = 2e-21
Identities = 21/218 (9%), Positives = 50/218 (22%), Gaps = 22/218 (10%)
Query: 15 ENSAILAKR-PKDSVSLVAVSKMVDSKKI-RVALSCGQVIFAENKLQEAKKKWIPLRKEW 72
N L +R L + + + L + L EA+ +
Sbjct: 5 SNINYLKQRVESLGSHLRPHLXTLRTLEAAGYLLDSKSAPATVSTLAEAEAYAKAGYTDL 64
Query: 73 DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI 132
+ + + ++ + A + + + V+I++++
Sbjct: 65 LYAVGIAPAKLKRVAALRQQGINLHILLDNITQAQAVVDYAAEFGQDFSVFIEIDSDDHR 124
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP------KPHFYLLSEIAREC-- 184
+ ++ + + GL K + R
Sbjct: 125 GGIKPSDS----KLLTIAKTLGEHFTGLXTHAGGSYACNTEQGLKNFAKQECDAVRIARN 180
Query: 185 -------KLTKLSMGMTRDFELAIAS-GATSVRIGSGI 214
S+G T + VR G
Sbjct: 181 NLETAGIHCAITSVGSTPTAHFGEDFSDISEVRAGVYT 218
>2dy3_A Alanine racemase; alpha/beta barrel, isomerase; HET: PLP;
2.10A {Corynebacterium glutamicum} (A:10-225)
Length = 216
Score = 96.5 bits (239), Expect = 3e-21
Identities = 28/223 (12%), Positives = 61/223 (27%), Gaps = 24/223 (10%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSK-----MVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
I ++ + K+ L+AV K K V + G F L EA +
Sbjct: 2 DAIAHNTRVLKQMAGPAKLMAVVKANAYNHGVEKVAPVIAAHGADAFGVATLAEAMQLRD 61
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
+ L +I + + + ++ V A + + ++ + + +
Sbjct: 62 IGISQE--VLCWIWTPEQDF--RAAIDRNIDLAVISPAHA-----KALIETDAEHIRVSI 112
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY-----LLSEIA 181
+ +SG+ + + + V G+ P+
Sbjct: 113 KIDSGLHRSGVDEQEWEGVFSALAAAPHIEVTGMFTHLACADEPENPETDRQIIAFRRAL 172
Query: 182 RECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ + + F VR G +G P
Sbjct: 173 ALARKHGLECPVNHVCNSPAFLTRSDLHMEMVRPGLAFYGLEP 215
>2rjg_A Alanine racemase; alpha/beta barrel, cell shape, cell WALL
biogenesis/degradation, isomerase, peptidoglycan
synthesis, pyridoxal phosphate; HET: KCX PLP; 2.40A
{Escherichia coli} PDB: 2rjh_A* 3b8v_A* 3b8u_A* 3b8t_A*
3b8w_A* (A:31-242)
Length = 212
Score = 96.1 bits (238), Expect = 3e-21
Identities = 32/216 (14%), Positives = 65/216 (30%), Gaps = 15/216 (6%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALS---CGQVIFAENKLQEAKKKWIPL 68
+ + ++ + + +VAV K + + F +L+EA +
Sbjct: 1 RALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPDADAFGVARLEEALRLR--- 57
Query: 69 RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNT 128
+ + + +S V E+ + L + S PV + +
Sbjct: 58 AGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALE----EASLDEPVTVWMXL 113
Query: 129 GYEIQKSGIMPNQTKDFVILCRQKYQ-LNVEGLMCIPPAMGNPKPHFYL----LSEIARE 183
+ + G+ P Q + F Q ++ PK + E
Sbjct: 114 DTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTFCE 173
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
K + S+ + L S VR G ++G P
Sbjct: 174 GKPGQRSIAASGGILLWPQSHFDWVRPGIILYGVSP 209
>3hur_A Alanine racemase; structural genomics, isomerase, pyridoxal
phosphate, PSI-2, protein structure initiative; 2.50A
{Oenococcus oeni psu-1} (A:16-238,A:376-395)
Length = 243
Score = 94.6 bits (234), Expect = 9e-21
Identities = 20/227 (8%), Positives = 58/227 (25%), Gaps = 28/227 (12%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKI------RVALSCGQVIFAENKLQEAKKKW 65
++ + + + AV K + + L EA +
Sbjct: 2 DAAAHNLQEIREWTKAKKVYAVLKADGYGLGAIPLAKAFQETASADALIVSNLDEALELR 61
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
+ + + + +G+ + + ++ D++ T+ + L V +
Sbjct: 62 ---QADLTLPIWVLGAWDYSDL-KLFIDHDIVITIPSLAWLQ----NLPDFEGTLKVSLA 113
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP--------HFYLL 177
++TG + ++ + + QL++ +
Sbjct: 114 IDTGMT-RIGFDKADEISAAKKIIDKNPQLDLFSVYTHFATADEAGEKSKAYFEEQLRRW 172
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
E+ + + ++R G I G
Sbjct: 173 QELTINQGFDPSLFSMANSATCIWHHDDPRISFAAIRPGQLISGVNV 219
>3e5p_A Alanine racemase; ALR, PLP, SCP, isomerase, pyridoxal
phosphate; HET: PLP EPE 2PE; 2.50A {Enterococcus
faecalis} PDB: 3e6e_A* (A:15-235)
Length = 221
Score = 93.8 bits (232), Expect = 2e-20
Identities = 30/217 (13%), Positives = 67/217 (30%), Gaps = 16/217 (7%)
Query: 15 ENSAILAKRPKDSVSLVAVSK-----MVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLR 69
EN +R + +L AV K + + A G F L EA +
Sbjct: 6 ENVQKECQRLPEGTALFAVVKANGYGHGAVESAKAAKKGGATGFCVALLDEAIELR---E 62
Query: 70 KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG 129
+ + + V ++ + ++E + L + + L V+++V+T
Sbjct: 63 AGVQDPILILSVVDLAYVPLLIQYDLSVTVATQEWLEAALQQLTPESNTPLRVHLKVDT- 121
Query: 130 YEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY-----LLSEIAREC 184
+ + P +TK V + + EG+ ++ +
Sbjct: 122 GMGRIGFLTPEETKQAVRFVQSHKEFLWEGIFTHFSTADEIDTSYFEKQAGRFKAVLAVL 181
Query: 185 K--LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ + + + +R G ++G P
Sbjct: 182 EELPRYVHVSNSATALWHPDVPGNMIRYGVAMYGLNP 218
>3co8_A Alanine racemase; protein structure initiative II, PSI-II,
NYSGXRC, PLP, TIM barrel, structural genomics; HET: PLP;
1.70A {Oenococcus oeni psu-1} (A:16-235)
Length = 220
Score = 93.1 bits (230), Expect = 3e-20
Identities = 34/223 (15%), Positives = 68/223 (30%), Gaps = 20/223 (8%)
Query: 11 KQKIENSAILAKRPKDSVSLVAVSKMVDSKK-----IRVALSCGQVIFAENKLQEAKKKW 65
K + + K+ + +L K ++A CG A + L E
Sbjct: 1 KSSLAYNVQYTKQVSGAKTLWLAVKSNAYGHGLLQVSKIARECGVDGLAVSVLDEGIAIR 60
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
+ D + +G + I S + + TVS S + I L V +
Sbjct: 61 ---QAGIDDFILILGPIDVKYA-PIASKYHFLTTVSSLDWLK--SADKILGKEKLSVNLA 114
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC- 184
V+TG + + L + +G+ + NP H++ +
Sbjct: 115 VDTGXNRIGVRSKKDLKDEIEFLQEHSDHFSYDGIFTHFASSDNPDDHYFQRQKNRWYEL 174
Query: 185 --------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ + G + + R+G+ ++G P
Sbjct: 175 IDGLIXPRYVHVXNSGAAXYHSKELPGCNSIARVGTVVYGVEP 217
>1bd0_A Alanine racemase; isomerase, pyridoxal phosphate, alanine
phosphonate; HET: IN5; 1.60A {Bacillus
stearothermophilus} (A:15-232)
Length = 218
Score = 92.3 bits (228), Expect = 5e-20
Identities = 34/217 (15%), Positives = 65/217 (29%), Gaps = 18/217 (8%)
Query: 15 ENSAILAKRPKDSVSLVAVSK-----MVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLR 69
+N L + D ++AV K D + R AL G A L EA
Sbjct: 5 DNVENLRRLLPDDTHIMAVVKANAYGHGDVQVARTALEAGASRLAVAFLDEALALR---E 61
Query: 70 KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG 129
K + + +G+ + + + + TV R S + + +++++T
Sbjct: 62 KGIEAPILVLGASRPADA-ALAAQQRIALTVFRSDWLEEAS-ALYSGPFPIHFHLKMDT- 118
Query: 130 YEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY-----LLSEIAREC 184
+ +TK V L + +EGL ++ +
Sbjct: 119 GMGRLGVKDEEETKRIVALIERHPHFVLEGLYTHFATADEVNTDYFSYQYTRFLHMLEWL 178
Query: 185 KLT--KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ + VR G ++G P
Sbjct: 179 PSRPPLVHCANSAASLRFPDRTFNMVRFGIAMYGLAP 215
>1xfc_A Alanine racemase; alpha-beta barrel, beta-structure for
C-terminal domain, internal aldimine form, isomerase;
HET: PLP; 1.90A {Mycobacterium tuberculosis} (A:19-240)
Length = 222
Score = 88.5 bits (218), Expect = 8e-19
Identities = 37/222 (16%), Positives = 64/222 (28%), Gaps = 20/222 (9%)
Query: 14 IENSAILAKRPKDSVSLVAVSK-----MVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL 68
IE++ + + L+AV K ++ + AL G + EA
Sbjct: 3 IEHNVRVLREHAGHAQLMAVVKADGYGHGATRVAQTALGAGAAELGVATVDEALALRADG 62
Query: 69 RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNT 128
L ++ + L DV VS + L + + R V ++V+T
Sbjct: 63 ITAP--VLAWLHPPGIDF--GPALLADVQVAVSSLRQLDELLHAVRRTGRTATVTVKVDT 118
Query: 129 GYEIQKSGI-MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP--------HFYLLSE 179
G G + + + + GLM P F
Sbjct: 119 GLNRNGVGPAQFPAMLTALRQAMAEDAVRLRGLMSHMVYADKPDDSINDVQAQRFTAFLA 178
Query: 180 IARE--CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
ARE + + + VR G ++G P
Sbjct: 179 QAREQGVRFEVAHLSNSSATMARPDLTFDLVRPGIAVYGLSP 220
>1vfs_A Alanine racemase; TIM-barrel, greek-KEY motief, isomerase;
HET: KCX DCS; 1.90A {Streptomyces lavendulae} (A:15-237)
Length = 223
Score = 86.6 bits (213), Expect = 2e-18
Identities = 23/222 (10%), Positives = 55/222 (24%), Gaps = 20/222 (9%)
Query: 14 IENSAILAKRPKDSVSLVAVSK-----MVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL 68
+ + + +L+AV K R A G +EA +
Sbjct: 3 VRANVRALRARAPRSALMAVVKSNAYGHGAVPCARAAQEAGAAWLGTATPEEALELRAAG 62
Query: 69 RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNT 128
+ + ++ + D+ +VS + R + + +T
Sbjct: 63 IQGR--IMCWLWTPGGPW--REAIETDIDVSVSGMWALDEVRAAARAAGRTARIQLXADT 118
Query: 129 GYE-IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY-----LLSEIAR 182
G + + + + + V G+ P ++
Sbjct: 119 GLGRNGCQPADWAELVGAAVAAQAEGTVQVTGVWSHFACADEPGHPSIRLQLDAFRDMLA 178
Query: 183 ECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ + + + VR G ++G P
Sbjct: 179 YAEKEGVDPEVRHIANSPATLTLPETHFDLVRTGLAVYGVSP 220
>1rcq_A Catabolic alanine racemase DADX; alpha-beta barrel,
beta-structure for C-terminal domain, internal/external
aldimine forms, isomerase; HET: KCX PLP DLY; 1.45A
{Pseudomonas aeruginosa} (A:11-221)
Length = 211
Score = 85.0 bits (209), Expect = 7e-18
Identities = 28/216 (12%), Positives = 62/216 (28%), Gaps = 16/216 (7%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSK----MVDSKKIRVALSCGQVIFAENKLQEAKKKWIP 67
Q + + R +AV K + + AL+ FA ++E +
Sbjct: 1 QALRH-NYRLAREATGARALAVIKADAYGHGAVRCAEALAAEADGFAVACIEEGLELREA 59
Query: 68 LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN 127
++ + + E++ D V + + S P+ + +
Sbjct: 60 GIRQPIL---LLEGFFEASELELIVAHDFWCVVHCAWQLEAIE----RASLARPLNVWLX 112
Query: 128 TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI-PPAMGNPKPHFYLLSEI---ARE 183
+ + G P + R ++ +M A P A +
Sbjct: 113 MDSGMHRVGFFPEDFRAAHERLRASGKVAKIVMMSHFSRADELDCPRTEEQLAAFSAASQ 172
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
++S+ + + VR G ++G P
Sbjct: 173 GLEGEISLRNSPAVLGWPKVPSDWVRPGILLYGATP 208
>3gwq_A D-serine deaminase; YP_556991.1, structural genomics, joint
center for structural genomics, JCSG, protein structure
initiative; HET: MSE; 2.00A {Burkholderia xenovorans
LB400} (A:72-295)
Length = 224
Score = 83.4 bits (205), Expect = 2e-17
Identities = 23/215 (10%), Positives = 55/215 (25%), Gaps = 23/215 (10%)
Query: 28 VSLVAVSKMVDSKKI-RVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
V L K + ++ R L G + + + + +G
Sbjct: 1 VKLAPHGKTTXAPQLFRRQLETGAWGITLATAHQVRAAYHGGVSRVLXANQLVGRRNXXX 60
Query: 87 VSEIVSL--FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
V+E++S F+ V + L ++ L V +++ +
Sbjct: 61 VAELLSDPEFEFFCLVDSVEGVEQLGEFFKSVNKQLQVLLELGVPGGRTGVRDAAQRNAV 120
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNPKPHFY-----------LLSEIARECKLTKLSMGM 193
+ R L + G+ + L+ + LS
Sbjct: 121 LEAITRYPDTLKLAGVELYEGVLKEEHEVREFLQSAVAVTRELVEQERFARAPAVLSGAG 180
Query: 194 TRDFELAIASGA---------TSVRIGSGIFGERP 219
+ +++ +R G + +
Sbjct: 181 SAWYDVVAEEFVKASETGKVEVVLRPGCYLTHDVG 215
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics,
protein structure initiative, PSI, NESG, northeast
structural genomics consortium; 1.80A {Bacillus
subtilis} (A:)
Length = 264
Score = 29.6 bits (65), Expect = 0.39
Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 3/48 (6%)
Query: 172 PHFYLLSEIARECKLTKLSMGMTRDFEL---AIASGATSVRIGSGIFG 216
+ LS I + K+ + + A GA V + + + G
Sbjct: 165 LNPLNLSFIIEQAKVPVIVDAGIGSPKDAAYAXELGADGVLLNTAVSG 212
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, X-RAY
analysis, stability, calorimetry lyase; 2.00A
{Pyrococcus furiosus} (A:)
Length = 248
Score = 28.9 bits (63), Expect = 0.60
Identities = 13/71 (18%), Positives = 21/71 (29%), Gaps = 5/71 (7%)
Query: 149 CRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTR---DFELAIASGA 205
Y +++ G PK + LL R C+ + GA
Sbjct: 157 TGFVYLVSLYGTTG--AREEIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGA 214
Query: 206 TSVRIGSGIFG 216
V +GS +
Sbjct: 215 NGVVVGSALVK 225
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase,
fusion protein, amino-acid biosynthesis cobalamin,
precorrin, novel fold; 2.10A {Thermotoga maritima} (A:)
Length = 266
Score = 28.3 bits (61), Expect = 0.80
Identities = 8/59 (13%), Positives = 15/59 (25%), Gaps = 3/59 (5%)
Query: 161 MCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTR---DFELAIASGATSVRIGSGIFG 216
I ++ + L ++ G F A +GA + S
Sbjct: 176 TSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHF 234
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase;
unknown function, aldolase superfamily, class I
aldolase, KDPG aldolase domain; 1.84A {Oleispira
antarctica} (A:)
Length = 217
Score = 27.9 bits (61), Expect = 1.1
Identities = 7/64 (10%), Positives = 16/64 (25%)
Query: 154 QLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSG 213
Q + L C P + S + + +++ + GS
Sbjct: 130 QAGITQLKCFPASAIGGAKLLKAWSGPFPDIQFCPTGGISKDNYKEYLGLPNVICAGGSW 189
Query: 214 IFGE 217
+
Sbjct: 190 LTES 193
>1nsj_A PRAI, phosphoribosyl anthranilate isomerase;
thermostability; 2.00A {Thermotoga maritima} (A:)
Length = 205
Score = 27.5 bits (60), Expect = 1.7
Identities = 12/88 (13%), Positives = 23/88 (26%), Gaps = 4/88 (4%)
Query: 134 KSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF--YLLSEIARECKLTKLSM 191
+ + + Y+ L P G F L+ + LS
Sbjct: 99 LVIKAVGVSNERDMERALNYREFPILLDTKTPEYGGSGKTFDWSLILPYRDRFRYLVLSG 158
Query: 192 GMTRD--FELAIASGATSVRIGSGIFGE 217
G+ + +V + SG+
Sbjct: 159 GLNPENVRSAIDVVRPFAVDVSSGVEAF 186
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG;
structural genomics, protein structure initiative, PSI;
2.90A {Pseudomonas aeruginosa} (A:)
Length = 265
Score = 27.3 bits (59), Expect = 1.8
Identities = 11/60 (18%), Positives = 18/60 (30%), Gaps = 3/60 (5%)
Query: 160 LMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFEL---AIASGATSVRIGSGIFG 216
+ G + Y L I E K+ L A+ G +V + + I
Sbjct: 162 PLAGLIGSGLGICNPYNLRIILEEAKVPVLVDAGVGTASDAAIAMELGCEAVLMNTAIAH 221
>3i1n_U 50S ribosomal protein L24; ribosome structure, protein-RNA
complex, acetylation, ribonucleoprotein, ribosomal
protein, RNA-binding, rRNA- binding, methylation; 3.19A
{Escherichia coli k-12} PDB: 1vs8_U 1vs6_U 3i1p_U
3i1r_U 3i1t_U 3i20_U 3i22_U 3e1b_O 3e1d_O 2qam_U*
1p85_S 1p86_S 2awb_U 2aw4_U 2i2v_U 2i2t_U* 2qao_U*
2qba_U* 2qbc_U* 2qbe_U ... (U:1-25,U:67-104)
Length = 63
Score = 26.8 bits (60), Expect = 2.3
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 35 KMVDSKKIRVALSCGQVI 52
+ D KK+R S + I
Sbjct: 45 RFEDGKKVRFFKSNSETI 62
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2- epimerase;
mannac-6-P epimerase, NANE, structural genomics, protein
structure initiative; 1.95A {Staphylococcus aureus
subsp} (A:1-207)
Length = 207
Score = 26.8 bits (58), Expect = 2.4
Identities = 8/89 (8%), Positives = 22/89 (24%), Gaps = 10/89 (11%)
Query: 136 GIMPNQTKDFVILCRQKYQLNVEGLMCIP-------PAMGNPKPHFYLLSEIARECKLTK 188
+ V + +L + + + F L ++ +
Sbjct: 119 NVEIXADIATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKV 178
Query: 189 LSMGMTRD---FELAIASGATSVRIGSGI 214
++ G ++ G +G I
Sbjct: 179 IAEGNVITPDXYKRVXDLGVHCSVVGGAI 207
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine
biosynthesis, lyase, phosphate-binding sites; 1.45A
{Thermotoga maritima} (D:)
Length = 253
Score = 26.7 bits (57), Expect = 2.8
Identities = 8/59 (13%), Positives = 15/59 (25%), Gaps = 3/59 (5%)
Query: 161 MCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTR---DFELAIASGATSVRIGSGIFG 216
I ++ + L ++ G F A +GA + S
Sbjct: 171 TSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHF 229
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP,
oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo
sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
(A:36-258,A:310-335)
Length = 249
Score = 26.5 bits (57), Expect = 2.8
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 3/48 (6%)
Query: 172 PHFYLLSEIARECKLTKLSMGMTR---DFELAIASGATSVRIGSGIFG 216
++ A K +S G D A +GA V +G + G
Sbjct: 175 SAVMECADAAHGLKGHIISDGGCSCPGDVAKAFGAGADFVMLGGMLAG 222
>1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase;
alpha-beta barrel, TRPF, riken structural
genomics/proteomics initiative, RSGI; 2.00A {Thermus
thermophilus} (A:)
Length = 203
Score = 26.7 bits (58), Expect = 2.8
Identities = 7/88 (7%), Positives = 25/88 (28%), Gaps = 2/88 (2%)
Query: 132 IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSM 191
+ + + + + L+ G+ + + ++ +
Sbjct: 93 VGRFYPVIKAFPLEGPARPEWADYPAQALLLDGKRPGSGEAYPRAWAKPLLATGRRVILA 152
Query: 192 G--MTRDFELAIASGATSVRIGSGIFGE 217
G + E +A ++ + SG+
Sbjct: 153 GGIAPENLEEVLALRPYALDLASGVEEA 180
>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta
barrel, lyase; HET: LG6; 1.20A {Escherichia coli} (A:)
Length = 216
Score = 26.5 bits (57), Expect = 2.9
Identities = 5/52 (9%), Positives = 7/52 (13%), Gaps = 2/52 (3%)
Query: 167 MGNPKPHFYLLSEIARECKLTKLSMGMTR--DFELAIASGATSVRIGSGIFG 216
+ + G D L G I
Sbjct: 145 GVAWGEADITAIKRLSDMGFKVTVTGGLALEDLPLFKGIPIHVFIAGRSIRD 196
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} (A:)
Length = 214
Score = 26.4 bits (57), Expect = 2.9
Identities = 4/65 (6%), Positives = 15/65 (23%)
Query: 153 YQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGS 212
++ P ++ + + ++ +A + GS
Sbjct: 126 MDYGLKEFKFFPAEANGGVKALQAIAGPFSQVRFCPTGGISPANYRDYLALKSVLCIGGS 185
Query: 213 GIFGE 217
+
Sbjct: 186 WLVPA 190
>1o0y_A Deoxyribose-phosphate aldolase; TM1559, structural genomics,
JCSG, PSI, protein structure initiative, joint center
for structural genomics; 1.90A {Thermotoga maritima}
(A:)
Length = 260
Score = 26.3 bits (56), Expect = 3.0
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 195 RDFELAIASGATSVRIGSGIFGERPC 220
D I GA + SG+ +
Sbjct: 229 EDAVKMIMYGADRIGTSSGVKIVQGG 254
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate,
lyase; 1.65A {Salmonella typhimurium} (A:)
Length = 211
Score = 26.4 bits (57), Expect = 3.5
Identities = 9/88 (10%), Positives = 25/88 (28%), Gaps = 5/88 (5%)
Query: 134 KSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL--LSEIARECKLTKLSM 191
+ + D R + + L + L + + + ++++
Sbjct: 105 QVVVDMICVDDLPARVRLLEEAGADMLAVHTGTDQQAAGRKPIDDLITMLKVRRKARIAV 164
Query: 192 GM---TRDFELAIASGATSVRIGSGIFG 216
++ + G V +GS I
Sbjct: 165 AGGISSQTVKDYALLGPDVVIVGSAITH 192
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural
genomics, joint center for structural genomics, JCSG,
protein structure initiative; HET: MSE 2PE; 2.71A
{Thermotoga maritima MSB8} (A:1-212,A:291-326)
Length = 248
Score = 26.4 bits (57), Expect = 3.6
Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 5/65 (7%)
Query: 155 LNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTR---DFELAIASGATSVRIG 211
+ EG F L+++++R + ++ G A A GA +V+ G
Sbjct: 148 VIAEGXESGGHIGE--VTTFVLVNKVSRSVNIPVIAAGGIADGRGXAAAFALGAEAVQXG 205
Query: 212 SGIFG 216
+
Sbjct: 206 TRFVA 210
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum
aerophilum} (A:)
Length = 253
Score = 25.9 bits (55), Expect = 4.3
Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 3/59 (5%)
Query: 161 MCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTR---DFELAIASGATSVRIGSGIFG 216
I L+ +A ++ ++ G F A A+GA +V S
Sbjct: 174 TSIDRDGTGLGYDVELIRRVADSVRIPVIASGGAGRVEHFYEAAAAGADAVLAASLFHF 232
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, transferase; 2.30A {Thermus thermophilus} (F:)
Length = 252
Score = 25.9 bits (55), Expect = 4.5
Identities = 12/101 (11%), Positives = 25/101 (24%), Gaps = 5/101 (4%)
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC--IPPAMGNPKPHFYLLS 178
E+ +G V + +L ++ + L
Sbjct: 130 IDARWRGDFPEVHVAGGRVPTGLHAVEWAVKGVELGAGEILLTSMDRDGTKEGYDLRLTR 189
Query: 179 EIARECKLTKLSMGMTR---DFELAIASGATSVRIGSGIFG 216
+A + ++ G F A +GA + S
Sbjct: 190 MVAEAVGVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHF 230
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy
metabolism, sugars, csgid, carbohydrate metabolism,
isomerase; HET: MSE 16G; 1.50A {Salmonella enterica
subsp} (A:1-213)
Length = 213
Score = 25.7 bits (55), Expect = 5.8
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 3/51 (5%)
Query: 167 MGNPKPHFYLLSEIARECKLTKLSMGMTR---DFELAIASGATSVRIGSGI 214
P+ L + + ++ G AI GA +V +GS I
Sbjct: 163 PDTPEEPDLPLVKALHDAGCRVIAEGRYNSPALAAEAIRYGAWAVTVGSAI 213
>3bpw_A Orotidine 5'-phosphate decarboxylase; P. falciparum,
orotidine 5'- monophosphate decarboxylase, XMP, lyase,
pyrimidine biosynthesis; HET: XMP; 1.70A {Plasmodium
falciparum} PDB: 2qaf_A* 3bar_A* 2q8z_A* 2f84_A 2q8l_A
2za1_A* 2za2_A 2za3_A* 2zcg_A (A:)
Length = 342
Score = 25.2 bits (54), Expect = 7.0
Identities = 6/82 (7%), Positives = 13/82 (15%), Gaps = 3/82 (3%)
Query: 138 MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDF 197
M + + + G + + G
Sbjct: 236 MAQEALNMSSYLNLEQNNEFIGFVVGANSYDEMNYIRTYFPNCYILSPGIGAQNGDLHKT 295
Query: 198 E---LAIASGATSVRIGSGIFG 216
+ + IG I
Sbjct: 296 LTNGYHKSYEKILINIGRAITK 317
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast,
calvin cycle, oxidative pentose phosphate pathway; 2.30A
{Solanum tuberosum} (A:)
Length = 230
Score = 25.0 bits (53), Expect = 8.1
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 196 DFELAIASGATSVRIGSGIFGE 217
+ I +GA ++ GS +FG
Sbjct: 192 NAYKVIEAGANALVAGSAVFGA 213
>3kga_A MAP kinase-activated protein kinase 2; small molecule
inhibitor, 3-aminopyrazole scaffold, scaffold hoping,
ATP-site kinase inhibitor, induced FIT; HET: LX9; 2.55A
{Homo sapiens} (A:1-98)
Length = 98
Score = 24.9 bits (54), Expect = 8.5
Identities = 12/70 (17%), Positives = 26/70 (37%), Gaps = 4/70 (5%)
Query: 47 SCGQVIFAENKL--QEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREK 104
G+V+ NK ++ K + + ++ IV + DV E + +
Sbjct: 30 INGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQCP--HIVRIVDVYENLYAGR 87
Query: 105 TASLLSLEMI 114
L+ +E +
Sbjct: 88 KCLLIVMECL 97
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation,
staurosporine, transferase; HET: STU; 2.70A {Homo
sapiens} (A:1-141)
Length = 141
Score = 24.8 bits (53), Expect = 9.0
Identities = 13/68 (19%), Positives = 27/68 (39%)
Query: 47 SCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTA 106
G+V+ NK + K L+ + ++++ IV + DV E + +
Sbjct: 74 INGKVLQIFNKRTQEKFALKXLQDCPKARREVELHWRASQCPHIVRIVDVYENLYAGRKC 133
Query: 107 SLLSLEMI 114
L+ E +
Sbjct: 134 LLIVXECL 141
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate,
lyase; 1.9A {Thermotoga maritima} (A:)
Length = 205
Score = 24.8 bits (53), Expect = 9.1
Identities = 10/87 (11%), Positives = 23/87 (26%), Gaps = 1/87 (1%)
Query: 130 YEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKL 189
++ G+ + +L L P + P+ + K
Sbjct: 98 QFCKEKGVFYMPGVMTPTELVKAMKLGHTILKLFPGEVVGPQFVKAMK-GPFPNVKFVPT 156
Query: 190 SMGMTRDFELAIASGATSVRIGSGIFG 216
+ +G +V +GS +
Sbjct: 157 GGVNLDNVCEWFKAGVLAVGVGSALVK 183
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.320 0.134 0.378
Gapped
Lambda K H
0.267 0.0479 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,526,430
Number of extensions: 62997
Number of successful extensions: 270
Number of sequences better than 10.0: 1
Number of HSP's gapped: 250
Number of HSP's successfully gapped: 41
Length of query: 222
Length of database: 4,956,049
Length adjustment: 85
Effective length of query: 137
Effective length of database: 2,082,624
Effective search space: 285319488
Effective search space used: 285319488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.8 bits)