BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780801|ref|YP_003065214.1| hypothetical protein
CLIBASIA_03460 [Candidatus Liberibacter asiaticus str. psy62]
(222 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780801|ref|YP_003065214.1| hypothetical protein CLIBASIA_03460 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 222
Score = 454 bits (1169), Expect = e-130, Method: Compositional matrix adjust.
Identities = 222/222 (100%), Positives = 222/222 (100%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE
Sbjct: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL
Sbjct: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI
Sbjct: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT
Sbjct: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
>gi|254780752|ref|YP_003065165.1| penicillin binding peptidoglycan synthetase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 817
Score = 24.3 bits (51), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 11/56 (19%)
Query: 43 RVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIE 98
R AL G + + +N K I L+K+W N ++ I +L+DV E
Sbjct: 310 RKALQNGLINYDQNDGFRGPIKRIDLKKDW-----------GNTLASIPTLYDVPE 354
>gi|254781193|ref|YP_003065606.1| putative DNA polymerase from bacteriophage origin [Candidatus
Liberibacter asiaticus str. psy62]
Length = 675
Score = 23.9 bits (50), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 3 LGNKL-QVFKQKIENSAILAKRPKDSVSLVAVSK 35
L N+L Q F+Q IEN + R + V LV + K
Sbjct: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
>gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 597
Score = 23.9 bits (50), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 45/101 (44%), Gaps = 21/101 (20%)
Query: 58 LQEAKKKWIPL--RKEWDVQLRFIGSLQSNKVSEIVSLF----------DVIETVSREKT 105
L+ KK W + WD+++R IG++ S S+ V L +IE + KT
Sbjct: 9 LRTLKKLWPYMWPANRWDLKVRIIGAMFSVIASKFVILGIPFLLKWVTESLIEQSTASKT 68
Query: 106 ASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
S L++ ++ I + + ++ ++ N +DF+
Sbjct: 69 TSYLTIGIV---------ILITSYGTMRVVNLISNHIRDFL 100
>gi|254781040|ref|YP_003065453.1| hypothetical protein CLIBASIA_04710 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 143
Score = 23.9 bits (50), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 83 QSNKVSEIVSLFDVIETVSREKTA 106
SNK EIV +F+VI + TA
Sbjct: 53 HSNKGREIVGIFEVITCTYPDPTA 76
>gi|254780151|ref|YP_003064564.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Liberibacter
asiaticus str. psy62]
Length = 408
Score = 23.5 bits (49), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 16 NSAILAKRPKDSVSLVAVSKMVDSKKIRVAL 46
NS L K PKD +VA+S VDS + L
Sbjct: 10 NSLDLDKNPKDMRVVVAMSGGVDSSVVAALL 40
>gi|254780191|ref|YP_003064604.1| alanyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 898
Score = 23.1 bits (48), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+I ++K QLNVE L C A N H ++SE+
Sbjct: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSH--IISEV 804
>gi|254780276|ref|YP_003064689.1| dihydrodipicolinate synthase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 292
Score = 22.7 bits (47), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 135 SGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK 171
+GI N T++ V L + + + + L+ + P P
Sbjct: 75 AGIGSNNTRESVELAQYAHSIGADALLVVIPYYNKPN 111
>gi|254780285|ref|YP_003064698.1| arginyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 586
Score = 22.3 bits (46), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 53 FAENKLQEAKKKWIPLRKEWDVQ 75
++ L ++KW+P+ K++ VQ
Sbjct: 217 YSSELLNFPEEKWLPIVKDYSVQ 239
>gi|254780634|ref|YP_003065047.1| NOL1/NOP2/SUN family signature protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 429
Score = 21.9 bits (45), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 70 KEWDVQLRFIGSLQSNKVSEIV 91
K+W + RF GS +S IV
Sbjct: 29 KDWGMSHRFAGSSDRASISNIV 50
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.320 0.134 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 123,684
Number of Sequences: 1233
Number of extensions: 4448
Number of successful extensions: 25
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 13
length of query: 222
length of database: 328,796
effective HSP length: 71
effective length of query: 151
effective length of database: 241,253
effective search space: 36429203
effective search space used: 36429203
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 36 (18.5 bits)