HHsearch alignment for GI: 254780802 and conserved domain: COG0060
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=1233.47 Aligned_cols=693 Identities=25% Similarity=0.414 Sum_probs=548.5
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCC---CCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 765689998999999998598036---76788883899807789789874004779778999999777189855676881
Q gi|254780802|r 4 RSYSPQETDSIWQSAWYDSNIFKA---ENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGW 80 (869)
Q Consensus 4 ~~y~~~~iE~kwq~~W~~~~~fe~---~~~~~~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~ 80 (869)
T Consensus 16 mr~~l~~~E~~i~~~W~e~~iy~k~~~~~~~g~~~FvfhDGPPyANG~iHiGHalnKilKDiI~Ry~~m~G~~v~~~pGW 95 (933)
T COG0060 16 MRANLPKKEPKILKFWEENDIYEKIREERNKGKPKFVLHDGPPYANGNIHIGHALNKILKDIIVRYKTMQGYDVPYVPGW 95 (933)
T ss_pred CCCCHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 66992341889998888736999999997389980897479997789822656677666663433320458858988997
Q ss_pred CCCCHHHHHHHHHH----------------CCCHHHHHHHHHHHHHHHHHHCCCEEECCCCEECCCHHHHHHHHHHHHHH
Q ss_conf 40205899999980----------------99999999999999999999819176646982147735999999999999
Q gi|254780802|r 81 DAFGMPAENAAREH----------------NVHPKMWTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDF 144 (869)
Q Consensus 81 d~~GlPie~~~~e~----------------~~~~~~~~~~~i~~~k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L 144 (869)
T Consensus 96 DcHGLPIE~~vek~lg~~k~~i~~~~~~efr~~Cr~~a~~~v~~q~~~f~RLGv~~Dw~npY~Tmd~~ye~~~~~~f~~~ 175 (933)
T COG0060 96 DCHGLPIELKVEKKLGIGKKDIESFGVEEFREKCREFALEQVDEQKEQFKRLGVWGDWENPYKTMDPSYEESVWWAFKEL 175 (933)
T ss_pred CCCCCHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCEECCCHHHHHHHHHHHHHH
T ss_conf 67882288999998287631143348999999999999999999999987636763268980327889999999999999
Q ss_pred HHCCCEEECCEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 98896341221332147767677898984385334564322334752334303444544321002255432222210001
Q gi|254780802|r 145 MKHNVIVRKTAQVNWDPVEQTVLANEQVINGRGWRSDAPVEQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNW 224 (869)
Q Consensus 145 ~~kGliyrg~~pV~wcp~~~t~la~~Ev~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~ 224 (869)
T Consensus 176 ~~kGllyrg~Kpv~wsp~c~TaLAeaEvey~d----------~~dpSIy------------------------------- 214 (933)
T COG0060 176 YEKGLLYRGYKPVPWSPRCETALAEAEVEYGD----------VKDPSIY------------------------------- 214 (933)
T ss_pred HHCCCEECCCEEEEECCCCCCCHHHHHHCCCC----------CCCCEEE-------------------------------
T ss_conf 97797522770012268777600366640256----------6896289-------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCHHHHHCCH-HH-HHHHHHHHHHHHHH-HHHH
Q ss_conf 455767545355567777775136532001344432320033024432034541314-58-99988653111124-5554
Q gi|254780802|r 225 IGRSEGMEIRWEIVSNTIDQIEEILVYTTRPETIFGASFIAIAVDHSISEKLSCDNT-DI-KEFCDEEKQKGTSL-SVLD 301 (869)
Q Consensus 225 i~~~~~~~~~~~~~~~~~~~~~~l~~~TtrPeTl~g~~~i~v~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~-~~~~ 301 (869)
T Consensus 215 --------V~F~v~~~~~~~~~~lviWTTTPWTLPaN~aiav~pd~~Y~lv~~~~~~~IlA~~lve~~~~~~~~~~~~vl 286 (933)
T COG0060 215 --------VKFPVKDEGLDENAYLVIWTTTPWTLPANLAIAVHPDLDYVLVEVNGEKLILAKALVESVAKKAGVEDYEVL 286 (933)
T ss_pred --------EEEEECCCCCCCCCEEEEEECCCCCCHHCCEEEECCCCCEEEEEECCEEEEEHHHHHHHHHHHCCCCCEEEE
T ss_conf --------997733578877707999948987731004367679851699997888999829989999987098420776
Q ss_pred HHCCCCCCCCCEECCCCCC---CEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCC-CCCCCCCCCCCCCCCCCC
Q ss_conf 3025532378610377777---415776311234545333222111346721101221035-443210167765554222
Q gi|254780802|r 302 KTEKKGIYTGIHVKHPLNP---NVVIPVYIANFVFMNYGTGAIFGCPFADQRDMDFAKKYG-LPIIPIMKRSINHSQDIE 377 (869)
Q Consensus 302 ~~~~~~~~~G~~~~~P~~~---~~~ipv~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~k~g-lpi~~v~~~~~~~~~~~~ 377 (869)
T Consensus 287 ~~~kG~~Leg~~y~hPf~~~~~~~~~~vi~gd~VT~d~GTG~VHtAPghGeeDy~vg~~~g~l~v~~pVD~~G~yt~~~~ 366 (933)
T COG0060 287 ETFKGSELEGLRYEHPFYDFVYDRAFPVILGDHVTLDDGTGLVHTAPGHGEEDYEVGKKYGLLEVLNPVDDNGRYTEEAP 366 (933)
T ss_pred EEEEHHHHCCCEEECCCCCCCCCCEEEEEECCEEECCCCCCCEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCH
T ss_conf 77553662878764887654545604688527672279841056389898789999998299676466688855666543
Q ss_pred C--H-----------------HHCCCCCCCCCCHHHCCCCH---------------HHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 1--1-----------------21012334458300013564---------------665488899997404677520222
Q gi|254780802|r 378 E--G-----------------KAFSGDGIMINSSFLDGMTN---------------TEALQAVMSHLEKQNIKNSPIGKR 423 (869)
Q Consensus 378 ~--~-----------------~~~~~~~~~~~~~~~~g~~~---------------~~~~~~i~~~l~~~~~~~~~~~~~ 423 (869)
T Consensus 367 ~~~G~~v~dAn~~Ii~~Lk~~g~Ll~~e~i~HsYPhcWR~ktPlIyRAt~QWFi~v~~~r~~~l~~i~~v~w~P~~-~~~ 445 (933)
T COG0060 367 KYEGLFVKDANKKIIEDLKEKGNLLKSEKIEHSYPHCWRTKTPLIYRATPQWFVSVDKLRDKMLKEINKVNWVPDW-GKN 445 (933)
T ss_pred HHCCCEECCCCHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCEEEEEECCHHEEEHHHHHHHHHHHHHCCEEECHH-HHH
T ss_conf 2178240007899999998679531533577579866678980698505203367888999999998555688715-789
Q ss_pred HHHHH---CCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHH--HHHCCCCCCCC
Q ss_conf 11100---01112211232222234223334684634742000111001000224542100245642--11013676443
Q gi|254780802|r 424 KINFR---LRDWCISRQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTWKK--IFCVKCGSEAL 498 (869)
Q Consensus 424 ~~~~~---l~DW~ISRqr~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~ 498 (869)
T Consensus 446 R~~~mve~r~DW~ISRQR~WGvPiPi~~~~~~g~~~~~~~El~e~~~~~~~--~~g~~~w~~~~idel~~~~~~~g~~~~ 523 (933)
T COG0060 446 RFGNMVENRPDWCISRQRYWGVPIPVWYCKETGEILVITEELEELVGQLVE--EKGIDDWHRPDIDELLPPCPEDGKEYR 523 (933)
T ss_pred HHHHHHCCCCCCEEECCCCCCCCEEEEEECCCCCEECCHHHHHHHHHHHHH--HCCCHHHHCCCHHHHCCCCCCCCCEEE
T ss_conf 999997189864365166678853379988999742328999999987743--217266515634764578888765059
Q ss_pred CCCCCCCCCCCCC-CCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCC-CCCCCCCC
Q ss_conf 5643234566643-332233555654410135664114334401455544332023455532013478732-23200222
Q gi|254780802|r 499 RETDTMDTFVDSS-WYYMRYMTPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIGYIE-IDEPFKRL 576 (869)
Q Consensus 499 r~~dvld~w~dS~-~~~~~~~~~~~~~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~g~~~-~~~pf~~l 576 (869)
T Consensus 524 rv~DvlDVWFDSGs~~~a---~~~---~~~~~~~~~~~-aD~~lEGsDQ~-------RGWF~Ssl~~s~a~~~~aPYk~v 589 (933)
T COG0060 524 RVPDVLDVWFDSGSTPYA---VLH---PRENLKFPALF-ADFYLEGSDQT-------RGWFYSSLLTSTALFGRAPYKNV 589 (933)
T ss_pred ECCCCEEEEECCCCCCCC---CCC---CCCCCCCCCCC-CCEEEEECCCC-------CHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 657546888737897111---107---75444676555-75799706655-------22689999999997288507877
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 23553232243323587001306202210256777544110489706404742100000012222100123463356665
Q gi|254780802|r 577 FTQGMVVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLF 656 (869)
Q Consensus 577 ~~~G~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~ 656 (869)
T Consensus 590 ltHGfvlDe-----------------------------------------~GrKMSKSlGN~v~P~~V~~~yGADiLRLw 628 (933)
T COG0060 590 LTHGFVLDE-----------------------------------------KGRKMSKSLGNVVDPQDVIDKYGADILRLW 628 (933)
T ss_pred HHCCCEECC-----------------------------------------CCCCCCCCCCCCCCHHHHHHHHCCHHEEEE
T ss_conf 632617888-----------------------------------------888765557881898999876276340466
Q ss_pred HHHCCCCCCCCCCCCCCHHHHHHHHHHHHH---HHHHHHCCCCCCC--------CHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 530133211111343210114556778899---9997630246678--------97569999999999999999988168
Q gi|254780802|r 657 VLSDSPPDRDIIWSNKGVDSTYQFIQQIWR---LIYNAKDELQTSS--------TKKDISLISKSTKFLERIEENYQNLS 725 (869)
Q Consensus 657 ~~~~~~~~~d~~~s~~~i~~~~rfl~kl~~---l~~~~~~~~~~~~--------~~~D~~ils~~~~~i~~v~~~~e~~~ 725 (869)
T Consensus 629 v~ss-d~~~dl~~s~~il~~~~~~~r~irNt~rF~l~nl~~fdp~~~~~~~~~~~~~Drwil~rl~~l~~~v~eaye~y~ 707 (933)
T COG0060 629 VASS-DYWEDLRFSDEILKQVREVYRKIRNTYRFLLGNLDDFDPKKDAVLPEELRELDRWILSRLNSLVKEVREAYENYD 707 (933)
T ss_pred EEEC-CCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 5615-823032027889999999999999999999885058994213351444232179999999999999999998467
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHCCCCCCCC---------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC---CCE
Q ss_conf 899999999999-999999986211000221---------7999999999999997223438999999982899---835
Q gi|254780802|r 726 FNKAVANIHELV-NVISKPLMEIAKKKSNAD---------RISTIRYILEKLIIMMSPMIPHLAEECWQLLGNA---GLV 792 (869)
Q Consensus 726 f~~ai~~i~~f~-n~ls~~y~~~~k~~~~~~---------~~~~l~~vl~~l~~lLaPi~PhiaEEiw~~Lg~~---~~i 792 (869)
T Consensus 708 f~~v~~~l~~F~~~dLS~~Yld~~kdr~y~~~~~s~~rraa~~~Ly~il~~l~~~lAPilPftaEeiw~~l~~~~~~eSV 787 (933)
T COG0060 708 FHKVVRALMNFVSEDLSNWYLDIIKDRLYTEAADSPDRRAAQTTLYHILKALVRLLAPILPFTAEEIWQNLPGERKEESV 787 (933)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEE
T ss_conf 99999999999885665889888788764047999889999999999999999997101036599999747667887536
Q ss_pred EECCCCCCCHHH
Q ss_conf 517886659678
Q gi|254780802|r 793 AQQKWPKLDPIL 804 (869)
Q Consensus 793 ~~~~WP~~d~~~ 804 (869)
T Consensus 788 hl~~~p~~~~~~ 799 (933)
T COG0060 788 HLEDWPEVDEEL 799 (933)
T ss_pred EECCCCCCCCCC
T ss_conf 703576554321