HHsearch alignment for GI: 254780802 and conserved domain: COG0143
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=488.28 Aligned_cols=488 Identities=23% Similarity=0.341 Sum_probs=337.0
Q ss_pred CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 88838998077897898740047797789999997771898556768814020589999998099999999999999999
Q gi|254780802|r 32 NKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRK 111 (869)
Q Consensus 32 ~~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~ 111 (869)
T Consensus 3 ~~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~ 82 (558)
T COG0143 3 MMKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKE 82 (558)
T ss_pred CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 78738995589889998641367888789999999982697589995147877788999998599989999999999999
Q ss_pred HHHHCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 99981917664698214773599999999999998896341221332147767677898984385334564322334752
Q gi|254780802|r 112 QLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQVINGRGWRSDAPVEQRSLPQ 191 (869)
Q Consensus 112 ~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~pV~wcp~~~t~la~~Ev~~g~~~~~~~~v~~~~~~~ 191 (869)
T Consensus 83 ~~~~l~IsfD--~F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~-g~cp~cg~~~a~GD--- 156 (558)
T COG0143 83 LFKALNISFD--NFIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVE-GTCPKCGGEDARGD--- 156 (558)
T ss_pred HHHHHCCCCC--EECCCCCHHHHHHHHHHHHHHHHCCCEECCCEEEEECCCCCCCCCCHHEE-CCCCCCCCCCCCCC---
T ss_conf 9998098543--00168977799999999999997898731443564735435645621020-55898675345764---
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCC
Q ss_conf 33430344454432100225543222221000145576754535556777777513653200134443232003302443
Q gi|254780802|r 192 WFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIRWEIVSNTIDQIEEILVYTTRPETIFGASFIAIAVDHS 271 (869)
Q Consensus 192 ~~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~TtrPeTl~g~~~i~v~~~~~ 271 (869)
T Consensus 157 -----------------------------~C------------------------e~Cg~~~~P~~-------------- 169 (558)
T COG0143 157 -----------------------------QC------------------------ENCGRTLDPTE-------------- 169 (558)
T ss_pred -----------------------------HH------------------------HHCCCCCCCHH--------------
T ss_conf -----------------------------34------------------------32267579212--------------
Q ss_pred CCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 20345413145899988653111124555430255323786103777774157763112345453332221113467211
Q gi|254780802|r 272 ISEKLSCDNTDIKEFCDEEKQKGTSLSVLDKTEKKGIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIFGCPFADQRD 351 (869)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~P~~~~~~ipv~~~~~V~~~~GTG~V~~~P~h~~~D 351 (869)
T Consensus 170 ------------------------------------------l~~p~~------~i~g~~--p------~---------- 183 (558)
T COG0143 170 ------------------------------------------LINPVC------VISGAT--P------E---------- 183 (558)
T ss_pred ------------------------------------------CCCCEE------EEECCC--C------C----------
T ss_conf ------------------------------------------179816------864797--6------4----------
Q ss_pred CHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHH--HH---
Q ss_conf 0122103544321016776555422211210123344583000135646654888999974046775202221--11---
Q gi|254780802|r 352 MDFAKKYGLPIIPIMKRSINHSQDIEEGKAFSGDGIMINSSFLDGMTNTEALQAVMSHLEKQNIKNSPIGKRK--IN--- 426 (869)
Q Consensus 352 ~~~~~k~glpi~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~l~~~~~~~~~~~~~~--~~--- 426 (869)
T Consensus 184 --------------~r~~--------------------~hyF---f~L~~~~~~L~~~~~~~~~~~~p~~~~ne~~~~i~ 226 (558)
T COG0143 184 --------------VREE--------------------EHYF---FRLSKFQDKLLEWYESNPDFIWPANRRNEVLNFLK 226 (558)
T ss_pred --------------CCCC--------------------EEEE---EEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf --------------3354--------------------0599---88798699999999739654588689999999997
Q ss_pred HHCCCCCCCC-CCCCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 0001112211-232222234223334684634742000111001000224542100245642110136764435643234
Q gi|254780802|r 427 FRLRDWCISR-QRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTWKKIFCVKCGSEALRETDTMD 505 (869)
Q Consensus 427 ~~l~DW~ISR-qr~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~dvld 505 (869)
T Consensus 227 ~GL~d~~IsR~~~~WGipvP~--~p--~------------------------------------------------kv~Y 254 (558)
T COG0143 227 EGLKDLSITRTDLDWGIPVPG--DP--G------------------------------------------------KVIY 254 (558)
T ss_pred CCCCCCCEECCCCCCCCCCCC--CC--C------------------------------------------------CEEE
T ss_conf 668664314589887725799--99--8------------------------------------------------7799
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHH----HHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 566643332233555654410135664114334----4014555443320234555320134787322320022223553
Q gi|254780802|r 506 TFVDSSWYYMRYMTPHAKDPINKELVRQWFPVD----QYIGGIEHAVLHLLYARFFAHILKKIGYIEIDEPFKRLFTQGM 581 (869)
Q Consensus 506 ~w~dS~~~~~~~~~~~~~~~~~~e~~~~~~P~D----~~i~g~d~~~~~~~~~r~~~~~l~~~g~~~~~~pf~~l~~~G~ 581 (869)
T Consensus 255 VWfDAligYisa~~~~~~-~~~~~~~~~~W~~~~~e~vhfIGKDii~F---Hav~wPamL~~~~~~----lP~~i~ahg- 325 (558)
T COG0143 255 VWFDALIGYISALGELAE-IGDDEDFKKFWPADDTELVHFIGKDIIRF---HAVYWPAMLMAAGLP----LPTRIFAHG- 325 (558)
T ss_pred EEECCHHHHHHHHCCHHC-CCCHHHHHHHCCCCCCEEEEEECCCCCCC---HHHHHHHHHHHCCCC----CCCEEEEEE-
T ss_conf 963448899999541210-58767898637788845999962456743---245789999738999----887798401-
Q ss_pred CCCCCCCCCCCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 23224332358700130620221025677754411048970640474210000001222210012346335666553013
Q gi|254780802|r 582 VVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDS 661 (869)
Q Consensus 582 v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~~~~~~ 661 (869)
T Consensus 326 -----------------------------------------~l~~~G~KmSKSrG~~V~~~~~~~~~~~D~lRYyL~~~~ 364 (558)
T COG0143 326 -----------------------------------------FLTLEGQKMSKSRGNVVDPDELLEQYGVDALRYYLAREL 364 (558)
T ss_pred -----------------------------------------EEEECCCCCCCCCCCEEEHHHHHHHCCCHHHHHHHHHHC
T ss_conf -----------------------------------------399779412442881871799998748238579888737
Q ss_pred CCCCCCCCCCCCHH---------HHHHHHHHHHHHHHHHHCCCCCCC----CHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 32111113432101---------145567788999997630246678----97569999999999999999988168899
Q gi|254780802|r 662 PPDRDIIWSNKGVD---------STYQFIQQIWRLIYNAKDELQTSS----TKKDISLISKSTKFLERIEENYQNLSFNK 728 (869)
Q Consensus 662 ~~~~d~~~s~~~i~---------~~~rfl~kl~~l~~~~~~~~~~~~----~~~D~~ils~~~~~i~~v~~~~e~~~f~~ 728 (869)
T Consensus 365 p~~~D~dFs~~~f~~rvN~dL~n~lgNl~~R~l~fi~k~~~g~vp~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~ 444 (558)
T COG0143 365 PEGSDGDFSWEDFVERVNADLANKLGNLANRTLGFINKYFDGVVPAAGAPDLEEDEELLALAREALEAVAEAMEKYEFRK 444 (558)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 78888888999999999899887888999999999975259968865455534569999999999999999998625999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCC----CCH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEECCC
Q ss_conf 9999999999999999862110002----217----99999999999999722343899999998289983551788
Q gi|254780802|r 729 AVANIHELVNVISKPLMEIAKKKSN----ADR----ISTIRYILEKLIIMMSPMIPHLAEECWQLLGNAGLVAQQKW 797 (869)
Q Consensus 729 ai~~i~~f~n~ls~~y~~~~k~~~~----~~~----~~~l~~vl~~l~~lLaPi~PhiaEEiw~~Lg~~~~i~~~~W 797 (869)
T Consensus 445 Al~~i~~l~~~~N~Yi~~~~PW~l~k~~~~~~~~~vl~~~~~~~r~la~ll~P~mP~~a~ki~~~L~~~~~~~~~~~ 521 (558)
T COG0143 445 ALEEIMALASRANKYIDEQAPWKLAKEDKRERLATVLYLALELVRVLAILLYPFMPETAEKIWDQLGLEEDARNFTW 521 (558)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCHH
T ss_conf 99999999999988764289802320472999999999999999999998158686029999998288633210003