HHsearch alignment for GI: 254780802 and conserved domain: COG0525

>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=100.00  E-value=0  Score=1201.45  Aligned_cols=628  Identities=29%  Similarity=0.513  Sum_probs=533.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             87656899989999999985980367678888389980778978987400477977899999977718985567688140
Q gi|254780802|r    3 TRSYSPQETDSIWQSAWYDSNIFKAENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDA   82 (869)
Q Consensus         3 ~~~y~~~~iE~kwq~~W~~~~~fe~~~~~~~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~   82 (869)
T Consensus         2 ~~~ydp~~iE~k~~~~W~~~~~f~~~~~~~~~~f~I~~PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~Dh   81 (877)
T COG0525           2 PKTYDPKEIEEKWYKKWEESGYFKPDPNEDKPPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDH   81 (877)
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCC
T ss_conf             98778466508998778866985678877789727968979988865116545378999999998707973335798777


Q ss_pred             CCHHHHHHHHHH----CC------------CHHHHHHHHHHHHHHHHHHCCCEEECCCCEECCCHHHHHHHHHHHHHHHH
Q ss_conf             205899999980----99------------99999999999999999981917664698214773599999999999998
Q gi|254780802|r   83 FGMPAENAAREH----NV------------HPKMWTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMK  146 (869)
Q Consensus        83 ~GlPie~~~~e~----~~------------~~~~~~~~~i~~~k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~  146 (869)
T Consensus        82 AGIaTq~~VEk~l~~~g~~r~d~gRe~Fl~~~weWk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv~Ly~  161 (877)
T COG0525          82 AGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLYE  161 (877)
T ss_pred             CCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             88308999999998709880105899999999999999989999999984787355531126798899999999999997


Q ss_pred             CCCEEECCEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             89634122133214776767789898438533456432233475233430344454432100225543222221000145
Q gi|254780802|r  147 HNVIVRKTAQVNWDPVEQTVLANEQVINGRGWRSDAPVEQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIG  226 (869)
Q Consensus       147 kGliyrg~~pV~wcp~~~t~la~~Ev~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~i~  226 (869)
T Consensus       162 ~GlIYr~~~lVNWcP~~~TAiSd~EVe~~e~----------~g~L~----------------------------------  197 (877)
T COG0525         162 KGLIYRGERLVNWCPKCRTAISDIEVEYKEV----------EGKLY----------------------------------  197 (877)
T ss_pred             CCCEEECCCCCCCCCCCCCCHHHHHHCCCCC----------CEEEE----------------------------------
T ss_conf             8946514874347886334020445000110----------03689----------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             57675453555677777751365320013444323200330244320345413145899988653111124555430255
Q gi|254780802|r  227 RSEGMEIRWEIVSNTIDQIEEILVYTTRPETIFGASFIAIAVDHSISEKLSCDNTDIKEFCDEEKQKGTSLSVLDKTEKK  306 (869)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~l~~~TtrPeTl~g~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (869)
T Consensus       198 -----~i~y~l~~----~~~~i~VATTRPEtmlgdtAVaVhP~DeRYk~-------------------------------  237 (877)
T COG0525         198 -----YIKYPLAD----GDGYLVVATTRPETLLGDTAVAVHPDDERYKH-------------------------------  237 (877)
T ss_pred             -----EEEEECCC----CCCEEEEEECCCCCCCCCEEEEECCCCHHHHH-------------------------------
T ss_conf             -----99975389----98638998168630102669998998766686-------------------------------


Q ss_pred             CCCCCCEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCC
Q ss_conf             32378610377777415776311234545333222111346721101221035443210167765554222112101233
Q gi|254780802|r  307 GIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIFGCPFADQRDMDFAKKYGLPIIPIMKRSINHSQDIEEGKAFSGDG  386 (869)
Q Consensus       307 ~~~~G~~~~~P~~~~~~ipv~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~k~glpi~~v~~~~~~~~~~~~~~~~~~~~~  386 (869)
T Consensus       238 --LvGk~v~lPl~~-r~IpIiaD~~VD~eFGTG~VkItpahD~nD~e~~krh~Lp~i~i~d~dG~in~~~----------  304 (877)
T COG0525         238 --LVGKEVILPLVG-REIPIIADEYVDPEFGTGAVKITPAHDFNDYEVGKRHNLPLINIIDEDGRINEEA----------  304 (877)
T ss_pred             --HCCCEEECCCCC-CEEEEECCCCCCCCCCCCEEEECCCCCCCHHHHHHCCCCCCEEEECCCCEECCCC----------
T ss_conf             --358889646889-7533534733477678741897169994065453017987206888997054677----------


Q ss_pred             CCCCCHHHCCCCHHHHHHHHHHHHHHHCCC-------------------------------------------------C
Q ss_conf             445830001356466548889999740467-------------------------------------------------7
Q gi|254780802|r  387 IMINSSFLDGMTNTEALQAVMSHLEKQNIK-------------------------------------------------N  417 (869)
Q Consensus       387 ~~~~~~~~~g~~~~~~~~~i~~~l~~~~~~-------------------------------------------------~  417 (869)
T Consensus       305 ----~~~~~Gl~r~eAR~kIv~~L~~~GlLvk~e~~~h~V~~~~R~g~~IEp~ls~QWfVk~~~la~~~l~~~~~g~i~f  380 (877)
T COG0525         305 ----AGEFAGLDRFEARKKIVEDLEEQGLLVKIEPHKHSVGHCERCGTPIEPLLSKQWFVKVLELAKKALEAVKDGKIKF  380 (877)
T ss_pred             ----CCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEEEECCEEEEEHHHHHHHHHHHHHCCCCEE
T ss_conf             ----6445898699999999999996899676644454176116779602012324214870752699999874598468


Q ss_pred             CCHHHHHHHH----HCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf             5202221110----001112211232222234223334684634742000111001000224542100245642110136
Q gi|254780802|r  418 SPIGKRKINF----RLRDWCISRQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTWKKIFCVKC  493 (869)
Q Consensus       418 ~~~~~~~~~~----~l~DW~ISRqr~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l~~~~~~~~~~~~~~  493 (869)
T Consensus       381 ~P~~~~~~~~~W~~~i~DWcISRQlwwGh~IPvWy~~~~g~v~v~~~-~~----~~~~~--------------~~~~~~-  440 (877)
T COG0525         381 VPERMEKRYEDWMENIRDWCISRQLWWGHRIPVWYCKECGNVVVAEE-EP----EDPAA--------------AEKCPK-  440 (877)
T ss_pred             ECHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEECCCCCEEECCC-CC----CCHHH--------------HCCCCH-
T ss_conf             16889988999986383764222113176351599669983896786-54----35354--------------246822-


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             76443564323456664333223355565441013566411433440145554433202345553201347873223200
Q gi|254780802|r  494 GSEALRETDTMDTFVDSSWYYMRYMTPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIGYIEIDEPF  573 (869)
Q Consensus       494 ~~~~~r~~dvld~w~dS~~~~~~~~~~~~~~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~g~~~~~~pf  573 (869)
T Consensus       441 -~~~~qd~DVLDTWFSS~LwPfstlgWp~~----t~~l~~fyPt~llvtG~D--IIffWvarmi~~~~~~~~----~~PF  509 (877)
T COG0525         441 -EELEQDEDVLDTWFSSSLWPFSTLGWPEE----TPDLKKFYPTDLLVTGHD--IIFFWVARMIMRGLHLTG----EVPF  509 (877)
T ss_pred             -HCCCCCCCHHHHHHHCCCCCCCCCCCCCC----CHHHHHCCCCCEECCCCH--HHHHHHHHHHHHHHHHCC----CCCC
T ss_conf             -02057852323324115646400689874----447773588730035531--338999999999998658----9996


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCCCCCCHHHH
Q ss_conf             22223553232243323587001306202210256777544110489706404742100000012222100123463356
Q gi|254780802|r  574 KRLFTQGMVVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTA  653 (869)
Q Consensus       574 ~~l~~~G~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~~yGaD~l  653 (869)
T Consensus       510 k~V~ihGLVrDe-----------------------------------------~G~KMSKS~GNvIDP~d~I~~yGaDAl  548 (877)
T COG0525         510 KDVYIHGLVRDE-----------------------------------------QGRKMSKSKGNVIDPLDVIDKYGADAL  548 (877)
T ss_pred             CEEEEEEEEECC-----------------------------------------CCCCCCCCCCCCCCHHHHHHHHCHHHH
T ss_conf             278981167868-----------------------------------------888875557885897999988485899


Q ss_pred             HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC---CCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             6655301332111113432101145567788999997630---2466------789756999999999999999998816
Q gi|254780802|r  654 RLFVLSDSPPDRDIIWSNKGVDSTYQFIQQIWRLIYNAKD---ELQT------SSTKKDISLISKSTKFLERIEENYQNL  724 (869)
Q Consensus       654 Rl~~~~~~~~~~d~~~s~~~i~~~~rfl~kl~~l~~~~~~---~~~~------~~~~~D~~ils~~~~~i~~v~~~~e~~  724 (869)
T Consensus       549 Rf~la~~~~~G~Di~~~~~~~~~~rnF~nKlWNa~Rfv~~~~~~~~~~~~~~~~~~~~drWIls~l~~~v~~v~~~ld~y  628 (877)
T COG0525         549 RFTLASLASPGRDINFDEKRVEGYRNFLNKLWNATRFVLMNLDDLGPDDLDLLALSLADRWILSRLNETVKEVTEALDNY  628 (877)
T ss_pred             HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999536888665768899888999999987499999852544576543322235488999999999999999999862


Q ss_pred             CHHHHHHHHHHHH-HHHHHHHHHHCCCCCCC------CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEECCC
Q ss_conf             8899999999999-99999998621100022------1799999999999999722343899999998289983551788
Q gi|254780802|r  725 SFNKAVANIHELV-NVISKPLMEIAKKKSNA------DRISTIRYILEKLIIMMSPMIPHLAEECWQLLGNAGLVAQQKW  797 (869)
Q Consensus       725 ~f~~ai~~i~~f~-n~ls~~y~~~~k~~~~~------~~~~~l~~vl~~l~~lLaPi~PhiaEEiw~~Lg~~~~i~~~~W  797 (869)
T Consensus       629 ~f~~a~~~ly~F~W~~fcD~YlEl~K~~l~~~~~~~~~a~~tL~~vl~~~lrLLhPfmPfiTEei~q~l~~~~si~~~~~  708 (877)
T COG0525         629 RFDEAARALYEFIWNDFCDWYLELAKPRLYGGEEEKRAARATLYYVLDTLLRLLHPFMPFITEEIWQKLPGTESIHLASW  708 (877)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCEEEECCC
T ss_conf             37889999999969989899999821440285777899999999999999998488775015789986589883784168


Q ss_pred             CCCCHH
Q ss_conf             665967
Q gi|254780802|r  798 PKLDPI  803 (869)
Q Consensus       798 P~~d~~  803 (869)
T Consensus       709 P~~~~~  714 (877)
T COG0525         709 PEVDEE  714 (877)
T ss_pred             CCCCHH
T ss_conf             986311