HHsearch alignment for GI: 254780802 and conserved domain: COG0525
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=1201.45 Aligned_cols=628 Identities=29% Similarity=0.513 Sum_probs=533.8
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 87656899989999999985980367678888389980778978987400477977899999977718985567688140
Q gi|254780802|r 3 TRSYSPQETDSIWQSAWYDSNIFKAENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDA 82 (869)
Q Consensus 3 ~~~y~~~~iE~kwq~~W~~~~~fe~~~~~~~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~ 82 (869)
T Consensus 2 ~~~ydp~~iE~k~~~~W~~~~~f~~~~~~~~~~f~I~~PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~Dh 81 (877)
T COG0525 2 PKTYDPKEIEEKWYKKWEESGYFKPDPNEDKPPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDH 81 (877)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCC
T ss_conf 98778466508998778866985678877789727968979988865116545378999999998707973335798777
Q ss_pred CCHHHHHHHHHH----CC------------CHHHHHHHHHHHHHHHHHHCCCEEECCCCEECCCHHHHHHHHHHHHHHHH
Q ss_conf 205899999980----99------------99999999999999999981917664698214773599999999999998
Q gi|254780802|r 83 FGMPAENAAREH----NV------------HPKMWTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMK 146 (869)
Q Consensus 83 ~GlPie~~~~e~----~~------------~~~~~~~~~i~~~k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~ 146 (869)
T Consensus 82 AGIaTq~~VEk~l~~~g~~r~d~gRe~Fl~~~weWk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv~Ly~ 161 (877)
T COG0525 82 AGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLYE 161 (877)
T ss_pred CCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 88308999999998709880105899999999999999989999999984787355531126798899999999999997
Q ss_pred CCCEEECCEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89634122133214776767789898438533456432233475233430344454432100225543222221000145
Q gi|254780802|r 147 HNVIVRKTAQVNWDPVEQTVLANEQVINGRGWRSDAPVEQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIG 226 (869)
Q Consensus 147 kGliyrg~~pV~wcp~~~t~la~~Ev~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~i~ 226 (869)
T Consensus 162 ~GlIYr~~~lVNWcP~~~TAiSd~EVe~~e~----------~g~L~---------------------------------- 197 (877)
T COG0525 162 KGLIYRGERLVNWCPKCRTAISDIEVEYKEV----------EGKLY---------------------------------- 197 (877)
T ss_pred CCCEEECCCCCCCCCCCCCCHHHHHHCCCCC----------CEEEE----------------------------------
T ss_conf 8946514874347886334020445000110----------03689----------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 57675453555677777751365320013444323200330244320345413145899988653111124555430255
Q gi|254780802|r 227 RSEGMEIRWEIVSNTIDQIEEILVYTTRPETIFGASFIAIAVDHSISEKLSCDNTDIKEFCDEEKQKGTSLSVLDKTEKK 306 (869)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~l~~~TtrPeTl~g~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (869)
T Consensus 198 -----~i~y~l~~----~~~~i~VATTRPEtmlgdtAVaVhP~DeRYk~------------------------------- 237 (877)
T COG0525 198 -----YIKYPLAD----GDGYLVVATTRPETLLGDTAVAVHPDDERYKH------------------------------- 237 (877)
T ss_pred -----EEEEECCC----CCCEEEEEECCCCCCCCCEEEEECCCCHHHHH-------------------------------
T ss_conf -----99975389----98638998168630102669998998766686-------------------------------
Q ss_pred CCCCCCEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCC
Q ss_conf 32378610377777415776311234545333222111346721101221035443210167765554222112101233
Q gi|254780802|r 307 GIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIFGCPFADQRDMDFAKKYGLPIIPIMKRSINHSQDIEEGKAFSGDG 386 (869)
Q Consensus 307 ~~~~G~~~~~P~~~~~~ipv~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~k~glpi~~v~~~~~~~~~~~~~~~~~~~~~ 386 (869)
T Consensus 238 --LvGk~v~lPl~~-r~IpIiaD~~VD~eFGTG~VkItpahD~nD~e~~krh~Lp~i~i~d~dG~in~~~---------- 304 (877)
T COG0525 238 --LVGKEVILPLVG-REIPIIADEYVDPEFGTGAVKITPAHDFNDYEVGKRHNLPLINIIDEDGRINEEA---------- 304 (877)
T ss_pred --HCCCEEECCCCC-CEEEEECCCCCCCCCCCCEEEECCCCCCCHHHHHHCCCCCCEEEECCCCEECCCC----------
T ss_conf --358889646889-7533534733477678741897169994065453017987206888997054677----------
Q ss_pred CCCCCHHHCCCCHHHHHHHHHHHHHHHCCC-------------------------------------------------C
Q ss_conf 445830001356466548889999740467-------------------------------------------------7
Q gi|254780802|r 387 IMINSSFLDGMTNTEALQAVMSHLEKQNIK-------------------------------------------------N 417 (869)
Q Consensus 387 ~~~~~~~~~g~~~~~~~~~i~~~l~~~~~~-------------------------------------------------~ 417 (869)
T Consensus 305 ----~~~~~Gl~r~eAR~kIv~~L~~~GlLvk~e~~~h~V~~~~R~g~~IEp~ls~QWfVk~~~la~~~l~~~~~g~i~f 380 (877)
T COG0525 305 ----AGEFAGLDRFEARKKIVEDLEEQGLLVKIEPHKHSVGHCERCGTPIEPLLSKQWFVKVLELAKKALEAVKDGKIKF 380 (877)
T ss_pred ----CCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEEEECCEEEEEHHHHHHHHHHHHHCCCCEE
T ss_conf ----6445898699999999999996899676644454176116779602012324214870752699999874598468
Q ss_pred CCHHHHHHHH----HCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 5202221110----001112211232222234223334684634742000111001000224542100245642110136
Q gi|254780802|r 418 SPIGKRKINF----RLRDWCISRQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTWKKIFCVKC 493 (869)
Q Consensus 418 ~~~~~~~~~~----~l~DW~ISRqr~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l~~~~~~~~~~~~~~ 493 (869)
T Consensus 381 ~P~~~~~~~~~W~~~i~DWcISRQlwwGh~IPvWy~~~~g~v~v~~~-~~----~~~~~--------------~~~~~~- 440 (877)
T COG0525 381 VPERMEKRYEDWMENIRDWCISRQLWWGHRIPVWYCKECGNVVVAEE-EP----EDPAA--------------AEKCPK- 440 (877)
T ss_pred ECHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEECCCCCEEECCC-CC----CCHHH--------------HCCCCH-
T ss_conf 16889988999986383764222113176351599669983896786-54----35354--------------246822-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 76443564323456664333223355565441013566411433440145554433202345553201347873223200
Q gi|254780802|r 494 GSEALRETDTMDTFVDSSWYYMRYMTPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIGYIEIDEPF 573 (869)
Q Consensus 494 ~~~~~r~~dvld~w~dS~~~~~~~~~~~~~~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~g~~~~~~pf 573 (869)
T Consensus 441 -~~~~qd~DVLDTWFSS~LwPfstlgWp~~----t~~l~~fyPt~llvtG~D--IIffWvarmi~~~~~~~~----~~PF 509 (877)
T COG0525 441 -EELEQDEDVLDTWFSSSLWPFSTLGWPEE----TPDLKKFYPTDLLVTGHD--IIFFWVARMIMRGLHLTG----EVPF 509 (877)
T ss_pred -HCCCCCCCHHHHHHHCCCCCCCCCCCCCC----CHHHHHCCCCCEECCCCH--HHHHHHHHHHHHHHHHCC----CCCC
T ss_conf -02057852323324115646400689874----447773588730035531--338999999999998658----9996
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCCCCCCHHHH
Q ss_conf 22223553232243323587001306202210256777544110489706404742100000012222100123463356
Q gi|254780802|r 574 KRLFTQGMVVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTA 653 (869)
Q Consensus 574 ~~l~~~G~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~~yGaD~l 653 (869)
T Consensus 510 k~V~ihGLVrDe-----------------------------------------~G~KMSKS~GNvIDP~d~I~~yGaDAl 548 (877)
T COG0525 510 KDVYIHGLVRDE-----------------------------------------QGRKMSKSKGNVIDPLDVIDKYGADAL 548 (877)
T ss_pred CEEEEEEEEECC-----------------------------------------CCCCCCCCCCCCCCHHHHHHHHCHHHH
T ss_conf 278981167868-----------------------------------------888875557885897999988485899
Q ss_pred HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC---CCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 6655301332111113432101145567788999997630---2466------789756999999999999999998816
Q gi|254780802|r 654 RLFVLSDSPPDRDIIWSNKGVDSTYQFIQQIWRLIYNAKD---ELQT------SSTKKDISLISKSTKFLERIEENYQNL 724 (869)
Q Consensus 654 Rl~~~~~~~~~~d~~~s~~~i~~~~rfl~kl~~l~~~~~~---~~~~------~~~~~D~~ils~~~~~i~~v~~~~e~~ 724 (869)
T Consensus 549 Rf~la~~~~~G~Di~~~~~~~~~~rnF~nKlWNa~Rfv~~~~~~~~~~~~~~~~~~~~drWIls~l~~~v~~v~~~ld~y 628 (877)
T COG0525 549 RFTLASLASPGRDINFDEKRVEGYRNFLNKLWNATRFVLMNLDDLGPDDLDLLALSLADRWILSRLNETVKEVTEALDNY 628 (877)
T ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999536888665768899888999999987499999852544576543322235488999999999999999999862
Q ss_pred CHHHHHHHHHHHH-HHHHHHHHHHCCCCCCC------CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEECCC
Q ss_conf 8899999999999-99999998621100022------1799999999999999722343899999998289983551788
Q gi|254780802|r 725 SFNKAVANIHELV-NVISKPLMEIAKKKSNA------DRISTIRYILEKLIIMMSPMIPHLAEECWQLLGNAGLVAQQKW 797 (869)
Q Consensus 725 ~f~~ai~~i~~f~-n~ls~~y~~~~k~~~~~------~~~~~l~~vl~~l~~lLaPi~PhiaEEiw~~Lg~~~~i~~~~W 797 (869)
T Consensus 629 ~f~~a~~~ly~F~W~~fcD~YlEl~K~~l~~~~~~~~~a~~tL~~vl~~~lrLLhPfmPfiTEei~q~l~~~~si~~~~~ 708 (877)
T COG0525 629 RFDEAARALYEFIWNDFCDWYLELAKPRLYGGEEEKRAARATLYYVLDTLLRLLHPFMPFITEEIWQKLPGTESIHLASW 708 (877)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCEEEECCC
T ss_conf 37889999999969989899999821440285777899999999999999998488775015789986589883784168
Q ss_pred CCCCHH
Q ss_conf 665967
Q gi|254780802|r 798 PKLDPI 803 (869)
Q Consensus 798 P~~d~~ 803 (869)
T Consensus 709 P~~~~~ 714 (877)
T COG0525 709 PEVDEE 714 (877)
T ss_pred CCCCHH
T ss_conf 986311