HHsearch alignment for GI: 254780802 and conserved domain: PRK11893
>PRK11893 methionyl-tRNA synthetase; Reviewed.
Probab=100.00 E-value=0 Score=606.82 Aligned_cols=454 Identities=26% Similarity=0.405 Sum_probs=341.9
Q ss_pred CCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 83899807789789874004779778999999777189855676881402058999999809999999999999999999
Q gi|254780802|r 34 KKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQL 113 (869)
Q Consensus 34 ~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~~ 113 (869)
T Consensus 1 k~~~it~p~Py~nG~lHlGHa~~~~~~Dv~~Ry~R~~G~~v~~~~GtD~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~ 80 (512)
T PRK11893 1 KKFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIERKAEEAGISPQELADRNSASFKRLW 80 (512)
T ss_pred CCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 97899689998899734463587999999999999559970746871775199999999859999999999999999999
Q ss_pred HHCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCHHHHHCC-----CCCCCCCCCCCCC
Q ss_conf 98191766469821477359999999999999889634122133214776767789898438-----5334564322334
Q gi|254780802|r 114 QSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQVING-----RGWRSDAPVEQRS 188 (869)
Q Consensus 114 ~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~pV~wcp~~~t~la~~Ev~~g-----~~~~~~~~v~~~~ 188 (869)
T Consensus 81 ~~l~i~~D--~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~c~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~ 158 (512)
T PRK11893 81 EALNISYD--DFIRTTDERHKEAVQEIFQRLLANGDIYLGKYSGWYCVRCEEFKTESEARLGEDGCPRCPIHGKPVEWVE 158 (512)
T ss_pred HHCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCEEEE
T ss_conf 98099888--7877998799999999999997679774324443226886444577772366578865555799776872
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEC
Q ss_conf 75233430344454432100225543222221000145576754535556777777513653200134443232003302
Q gi|254780802|r 189 LPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIRWEIVSNTIDQIEEILVYTTRPETIFGASFIAIAV 268 (869)
Q Consensus 189 ~~~~~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~TtrPeTl~g~~~i~v~~ 268 (869)
T Consensus 159 ~~~~flkl~~~~~~l~~~~~------------------------------------------------------------ 178 (512)
T PRK11893 159 EESYFFRLSKYQDKLLELYE------------------------------------------------------------ 178 (512)
T ss_pred CCCCEECCHHHHHHHHHHHH------------------------------------------------------------
T ss_conf 47611205054677999972------------------------------------------------------------
Q ss_pred CCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 44320345413145899988653111124555430255323786103777774157763112345453332221113467
Q gi|254780802|r 269 DHSISEKLSCDNTDIKEFCDEEKQKGTSLSVLDKTEKKGIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIFGCPFAD 348 (869)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~P~~~~~~ipv~~~~~V~~~~GTG~V~~~P~h~ 348 (869)
T Consensus 179 ----------------------------------------------~~~~------------~~~-----------p--- 186 (512)
T PRK11893 179 ----------------------------------------------ANPD------------FIQ-----------P--- 186 (512)
T ss_pred ----------------------------------------------CCCC------------CCC-----------C---
T ss_conf ----------------------------------------------4986------------518-----------6---
Q ss_pred CCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 21101221035443210167765554222112101233445830001356466548889999740467752022211100
Q gi|254780802|r 349 QRDMDFAKKYGLPIIPIMKRSINHSQDIEEGKAFSGDGIMINSSFLDGMTNTEALQAVMSHLEKQNIKNSPIGKRKINFR 428 (869)
Q Consensus 349 ~~D~~~~~k~glpi~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 428 (869)
T Consensus 187 ---------------------------------------------------~~~~~~~~~~l~---------------~~ 200 (512)
T PRK11893 187 ---------------------------------------------------ESRRNEVINFVK---------------SG 200 (512)
T ss_pred ---------------------------------------------------HHHHHHHHHHHH---------------CC
T ss_conf ---------------------------------------------------999999999985---------------77
Q ss_pred CCCCCCCCCC-CCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 0111221123-222223422333468463474200011100100022454210024564211013676443564323456
Q gi|254780802|r 429 LRDWCISRQR-SWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTWKKIFCVKCGSEALRETDTMDTF 507 (869)
Q Consensus 429 l~DW~ISRqr-~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~dvld~w 507 (869)
T Consensus 201 l~d~~ISR~~~~WGi~vP~~----------------------------------------------------~~~~~yvW 228 (512)
T PRK11893 201 LKDLSISRTNFDWGIPVPGD----------------------------------------------------PKHVIYVW 228 (512)
T ss_pred CCCCCEECCCCCCCCCCCCC----------------------------------------------------CCCCEEEH
T ss_conf 87661525678789988888----------------------------------------------------88620112
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 66433322335556544101356641143344014555443320234555320134787322320022223553232243
Q gi|254780802|r 508 VDSSWYYMRYMTPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIGYIEIDEPFKRLFTQGMVVHETY 587 (869)
Q Consensus 508 ~dS~~~~~~~~~~~~~~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~g~~~~~~pf~~l~~~G~v~~~~~ 587 (869)
T Consensus 229 fda~~~y~s~~~~~--~~~~~~~~~~~w~~~vh~~G~Dii~fH~~~---~~a~l~~~~~---~-~p~~~~~hg~l~---- 295 (512)
T PRK11893 229 FDALLNYLTALGYD--EPDLEELFRKYWPADVHLIGKDILRFHAVY---WPAFLMAAGL---P-LPKRVFAHGFLT---- 295 (512)
T ss_pred HHHHHHHHHHHCCC--CCCCHHHHHHCCCCEEEECCCCCCCHHHHH---HHHHHHHCCC---C-CCCCCCCCEEEE----
T ss_conf 53135567764588--765647898448750432366512013888---9999986699---9-886343111488----
Q ss_pred CCCCCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 32358700130620221025677754411048970640474210000001222210012346335666553013321111
Q gi|254780802|r 588 YQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDI 667 (869)
Q Consensus 588 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~~~~~~~~~~d~ 667 (869)
T Consensus 296 --------------------------------------~~G~KmSKS~Gn~I~~~d~l~~yg~D~lR~~L~~~~p~~~D~ 337 (512)
T PRK11893 296 --------------------------------------NDGQKMSKSLGNVIDPFDLVDKFGVDAVRYFLLREIPFGQDG 337 (512)
T ss_pred --------------------------------------ECCCEECCCCCCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCC
T ss_conf --------------------------------------757150134787589999999859504028776328877787
Q ss_pred CCCCCCHHHHHH--HHHHHHHHHHHHH-------CCCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 134321011455--6778899999763-------0246---678975699999999999999999881688999999999
Q gi|254780802|r 668 IWSNKGVDSTYQ--FIQQIWRLIYNAK-------DELQ---TSSTKKDISLISKSTKFLERIEENYQNLSFNKAVANIHE 735 (869)
Q Consensus 668 ~~s~~~i~~~~r--fl~kl~~l~~~~~-------~~~~---~~~~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai~~i~~ 735 (869)
T Consensus 338 ~Fs~~~f~~~~N~~l~~~~gNl~~R~~~~~~~~~~~~~p~~~~~~~~d~~~~~~~~~~~~~v~~~~e~~~~~~a~~~i~~ 417 (512)
T PRK11893 338 DFSEEAFINRINADLANDLGNLLSRTLSMIAKYFDGKVPEPGEFSEADAALLEKADAALEQVREAMDNFAFHKALEAILE 417 (512)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87899999897589999999999999999987517878886658876899999999999999999971259999999999
Q ss_pred HHHHHHHHHHHHCCCCC---CCC----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC
Q ss_conf 99999999986211000---221----79999999999999972234389999999828998
Q gi|254780802|r 736 LVNVISKPLMEIAKKKS---NAD----RISTIRYILEKLIIMMSPMIPHLAEECWQLLGNAG 790 (869)
Q Consensus 736 f~n~ls~~y~~~~k~~~---~~~----~~~~l~~vl~~l~~lLaPi~PhiaEEiw~~Lg~~~ 790 (869)
T Consensus 418 ~~~~~N~y~~~~~PW~l~k~d~~~~~~il~~~~~~~~~l~ill~P~~P~~ae~l~~~Lg~~~ 479 (512)
T PRK11893 418 LAAEANKYIDEQAPWSLAKTDPERLATVLYTLLESLRIIAVLLQPVMPELSAKILDQLGLEE 479 (512)
T ss_pred HHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCC
T ss_conf 99999999884787533158999999999999999999999985843599999999849998