HHsearch alignment for GI: 254780802 and conserved domain: cd00672
>cd00672 CysRS_core This is the catalytic core domain of cysteinyl tRNA synthetase (CysRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=98.81 E-value=8.3e-10 Score=85.18 Aligned_cols=87 Identities=20% Similarity=0.195 Sum_probs=74.6
Q ss_pred CCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 83899807789789874004779778999999777189855676881402058999999809999999999999999999
Q gi|254780802|r 34 KKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQL 113 (869)
Q Consensus 34 ~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~~ 113 (869)
T Consensus 19 ~~V~~Y~CGPTVYd~~HiGhaR~~v~~D~l~R~L~~~gy~V~~V~NITDIDDKII~~A~~~~~~~~ela~~y~~~f~~d~ 98 (213)
T cd00672 19 GLVRMYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAREEGLSIKEVAEYYTAEFFEDM 98 (213)
T ss_pred CEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 97889978996889987653425768999999999639935899972675189999999839999999999999999999
Q ss_pred HHCCCEE
Q ss_conf 9819176
Q gi|254780802|r 114 QSIGLSI 120 (869)
Q Consensus 114 ~~lG~~~ 120 (869)
T Consensus 99 ~~Lni~~ 105 (213)
T cd00672 99 KALNVLP 105 (213)
T ss_pred HHHCCCC
T ss_conf 9828999