HHsearch alignment for GI: 254780802 and conserved domain: cd00672

>cd00672 CysRS_core This is the catalytic core domain of cysteinyl tRNA synthetase (CysRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=98.81  E-value=8.3e-10  Score=85.18  Aligned_cols=87  Identities=20%  Similarity=0.195  Sum_probs=74.6

Q ss_pred             CCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf             83899807789789874004779778999999777189855676881402058999999809999999999999999999
Q gi|254780802|r   34 KKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQL  113 (869)
Q Consensus        34 ~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~~  113 (869)
T Consensus        19 ~~V~~Y~CGPTVYd~~HiGhaR~~v~~D~l~R~L~~~gy~V~~V~NITDIDDKII~~A~~~~~~~~ela~~y~~~f~~d~   98 (213)
T cd00672          19 GLVRMYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAREEGLSIKEVAEYYTAEFFEDM   98 (213)
T ss_pred             CEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             97889978996889987653425768999999999639935899972675189999999839999999999999999999


Q ss_pred             HHCCCEE
Q ss_conf             9819176
Q gi|254780802|r  114 QSIGLSI  120 (869)
Q Consensus       114 ~~lG~~~  120 (869)
T Consensus        99 ~~Lni~~  105 (213)
T cd00672          99 KALNVLP  105 (213)
T ss_pred             HHHCCCC
T ss_conf             9828999