HHsearch alignment for GI: 254780802 and conserved domain: cd00674

>cd00674 LysRS_core_class_I This is the catalytic core domain of lysyl tRNA synthetase (LysRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=98.31  E-value=3.3e-07  Score=67.39  Aligned_cols=50  Identities=40%  Similarity=0.642  Sum_probs=42.0

Q ss_pred             CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             888389980778978987400477977899999977718985567688140
Q gi|254780802|r   32 NKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDA   82 (869)
Q Consensus        32 ~~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~   82 (869)
T Consensus        17 ~k~~~v~~tG-~~PSG~~HIGn~rEv~~~~~V~ral~~~g~~~~~i~~~DD   66 (354)
T cd00674          17 GKEKYVVASG-ISPSGLIHIGNFREVVTADAVRRALRDLGFEVRLIYSWDD   66 (354)
T ss_pred             CCCCEEEECC-CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEC
T ss_conf             8985899478-7999886320550178899999999975996799998405