HHsearch alignment for GI: 254780802 and conserved domain: cd00805
>cd00805 TyrRS_core Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer, which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=92.31 E-value=0.42 Score=25.50 Aligned_cols=76 Identities=25% Similarity=0.360 Sum_probs=40.8
Q ss_pred CCC-CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCC-CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 789-8740047797789999997771898556768-8140-205899999980999999999999999999998191766
Q gi|254780802|r 45 PSG-NIHMGHLRNYVIGDVVARFMRASGYSVLHPM-GWDA-FGMPAENAAREHNVHPKMWTYQNIKVMRKQLQSIGLSID 121 (869)
Q Consensus 45 ~nG-~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~-G~d~-~GlPie~~~~e~~~~~~~~~~~~i~~~k~~~~~lG~~~D 121 (869)
T Consensus 9 PTG~~lHLGhyv~~~-~--~~~~q-~~g~~~~~~IaD~hAli~dp~~~~-~~r~~~~~e~i~~~~~~~~~~~~~~~~~~~ 83 (268)
T cd00805 9 PTAPSLHLGHLVPLM-K--LRDFQ-QAGHEVIVLIGDATAMIGDPSGKS-EERKLLTEEEILENAKYIKKQIKAILKFIP 83 (268)
T ss_pred CCCCCCCHHHHHHHH-H--HHHHH-HCCCCEEEEEECCEEECCCCCCCC-HHHCCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 999972499999999-9--99998-789958999954201405897650-222146199999988738999988525899
Q ss_pred CCCC
Q ss_conf 4698
Q gi|254780802|r 122 WSKD 125 (869)
Q Consensus 122 W~r~ 125 (869)
T Consensus 84 ~~~~ 87 (268)
T cd00805 84 PEKL 87 (268)
T ss_pred CCCE
T ss_conf 8746