HHsearch alignment for GI: 254780802 and conserved domain: cd00818

>cd00818 IleRS_core This is the catalytic core domain of isoleucine amino-acyl tRNA synthetases (IleRS) . This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00  E-value=0  Score=530.42  Aligned_cols=322  Identities=31%  Similarity=0.560  Sum_probs=246.2

Q ss_pred             CCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH-CC----------------
Q ss_conf             8389980778978987400477977899999977718985567688140205899999980-99----------------
Q gi|254780802|r   34 KKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREH-NV----------------   96 (869)
Q Consensus        34 ~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~-~~----------------   96 (869)
T Consensus         1 p~~~~~~~pPYaNg~pHiGHa~~~i~aDv~aRy~Rl~G~~v~f~~GtDeHG~pIe~~a~k~~~~~~~~~~~~~~~~~f~~   80 (339)
T cd00818           1 PEFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFRA   80 (339)
T ss_pred             CCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHH
T ss_conf             95599589988578734558899999999999998069988778851440399999999964898730476559999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCHHHHHCCC
Q ss_conf             99999999999999999981917664698214773599999999999998896341221332147767677898984385
Q gi|254780802|r   97 HPKMWTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQVINGR  176 (869)
Q Consensus        97 ~~~~~~~~~i~~~k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~pV~wcp~~~t~la~~Ev~~g~  176 (869)
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~T~~~~~~~~~~~~f~~l~~~G~iy~~~~~~~~p~---------------  145 (339)
T cd00818          81 KCREFALRYIDEQEETFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLYEKGLLYRGYKVVPWPL---------------  145 (339)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCHHCCCCCCEECCCHHHHHHHHHHHHHHHHCCCEECCCEEECCCC---------------
T ss_conf             99999999999999999983735147777121688999999999999998888626760536876---------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf             33456432233475233430344454432100225543222221000145576754535556777777513653200134
Q gi|254780802|r  177 GWRSDAPVEQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIRWEIVSNTIDQIEEILVYTTRPE  256 (869)
Q Consensus       177 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~TtrPe  256 (869)
T Consensus       146 --------~~~~~~~~F~~l~~~~~~ll~~~~~-----------------------------------------------  170 (339)
T cd00818         146 --------IYRATPQWFIRVEKLKDRLLEANDK-----------------------------------------------  170 (339)
T ss_pred             --------CCEECCCEEEECHHHHHHHHHHHHC-----------------------------------------------
T ss_conf             --------0058156799868999999987753-----------------------------------------------


Q ss_pred             CCCCCCEEEEECCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEEEEEECCCCCCCC
Q ss_conf             44323200330244320345413145899988653111124555430255323786103777774157763112345453
Q gi|254780802|r  257 TIFGASFIAIAVDHSISEKLSCDNTDIKEFCDEEKQKGTSLSVLDKTEKKGIYTGIHVKHPLNPNVVIPVYIANFVFMNY  336 (869)
Q Consensus       257 Tl~g~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~P~~~~~~ipv~~~~~V~~~~  336 (869)
T Consensus       171 ------------------------------------------------------------~---~~-~------------  174 (339)
T cd00818         171 ------------------------------------------------------------V---NW-I------------  174 (339)
T ss_pred             ------------------------------------------------------------C---CE-E------------
T ss_conf             ------------------------------------------------------------8---73-7------------


Q ss_pred             CCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf             33222111346721101221035443210167765554222112101233445830001356466548889999740467
Q gi|254780802|r  337 GTGAIFGCPFADQRDMDFAKKYGLPIIPIMKRSINHSQDIEEGKAFSGDGIMINSSFLDGMTNTEALQAVMSHLEKQNIK  416 (869)
Q Consensus       337 GTG~V~~~P~h~~~D~~~~~k~glpi~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~l~~~~~~  416 (869)
T Consensus       175 --------p~~~-------~---------------------------------~-------------~~l~~~~~-----  188 (339)
T cd00818         175 --------PEWV-------K---------------------------------E-------------GRFGNWLE-----  188 (339)
T ss_pred             --------CCHH-------H---------------------------------H-------------HHHHHHHH-----
T ss_conf             --------8610-------6---------------------------------6-------------49999971-----


Q ss_pred             CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf             75202221110001112211232222234223334684634742000111001000224542100245642110136764
Q gi|254780802|r  417 NSPIGKRKINFRLRDWCISRQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTWKKIFCVKCGSE  496 (869)
Q Consensus       417 ~~~~~~~~~~~~l~DW~ISRqr~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~  496 (869)
T Consensus       189 -----------~l~Dw~ISR~~~WGipvP~w~~~~~~~~~----------------------------------------  217 (339)
T cd00818         189 -----------NRRDWCISRQRYWGTPIPVWYSEDCGEVL----------------------------------------  217 (339)
T ss_pred             -----------CCCCCEEEECCCCCCCCCEEECCCCCCCC----------------------------------------
T ss_conf             -----------68565044026667534635648998321----------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             43564323456664333223355565441013566411433440145554433202345553201347873223200222
Q gi|254780802|r  497 ALRETDTMDTFVDSSWYYMRYMTPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIGYIEIDEPFKRL  576 (869)
Q Consensus       497 ~~r~~dvld~w~dS~~~~~~~~~~~~~~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~g~~~~~~pf~~l  576 (869)
T Consensus       218 ~~~~~dv~yVWfDa~~~~~~~~~~----~~~~~~~~~~~p~~~~~~GkDi--~~~---~f~~~~~~~~~-~~~~~P~~~v  287 (339)
T cd00818         218 VRRVPDVLDVWFDSGSMPYAQLHY----PFENEDFEELFPADFILEGSDQ--TRG---WFYSLLLLSTA-LFGKAPYKNV  287 (339)
T ss_pred             CCCCCCHHHHHHHCCCCHHHHCCC----CCCCHHHHCCCCCEEEEECCCC--CCH---HHHHHHHHHHH-HCCCCCCCEE
T ss_conf             003650177776356248987289----8643134138766056606331--233---79999998788-5489985214


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             23553232243323587001306202210256777544110489706404742100000012222100123463356665
Q gi|254780802|r  577 FTQGMVVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLF  656 (869)
Q Consensus       577 ~~~G~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~  656 (869)
T Consensus       288 ~~hg~~l~-----------------------------------------~~G~KMSKS~GnvI~p~~~l~~y~~D~lRyy  326 (339)
T cd00818         288 IVHGFVLD-----------------------------------------EDGRKMSKSLGNVVDPQEVIDKYGADALRLW  326 (339)
T ss_pred             EECCEEEC-----------------------------------------CCCCCCCCCCCCCCCHHHHHHHCCCHHHHHH
T ss_conf             88984999-----------------------------------------9986627889987898999987694799999


Q ss_pred             HHHCCCCCCCCCC
Q ss_conf             5301332111113
Q gi|254780802|r  657 VLSDSPPDRDIIW  669 (869)
Q Consensus       657 ~~~~~~~~~d~~~  669 (869)
T Consensus       327 l~~~~~~~~D~~F  339 (339)
T cd00818         327 VASSDVYAEDLRF  339 (339)
T ss_pred             HHHCCCCCCCCCC
T ss_conf             9916888889999