HHsearch alignment for GI: 254780802 and conserved domain: cd00818
>cd00818 IleRS_core This is the catalytic core domain of isoleucine amino-acyl tRNA synthetases (IleRS) . This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=0 Score=530.42 Aligned_cols=322 Identities=31% Similarity=0.560 Sum_probs=246.2
Q ss_pred CCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH-CC----------------
Q ss_conf 8389980778978987400477977899999977718985567688140205899999980-99----------------
Q gi|254780802|r 34 KKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREH-NV---------------- 96 (869)
Q Consensus 34 ~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~-~~---------------- 96 (869)
T Consensus 1 p~~~~~~~pPYaNg~pHiGHa~~~i~aDv~aRy~Rl~G~~v~f~~GtDeHG~pIe~~a~k~~~~~~~~~~~~~~~~~f~~ 80 (339)
T cd00818 1 PEFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFRA 80 (339)
T ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHH
T ss_conf 95599589988578734558899999999999998069988778851440399999999964898730476559999999
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCHHHHHCCC
Q ss_conf 99999999999999999981917664698214773599999999999998896341221332147767677898984385
Q gi|254780802|r 97 HPKMWTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQVINGR 176 (869)
Q Consensus 97 ~~~~~~~~~i~~~k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~pV~wcp~~~t~la~~Ev~~g~ 176 (869)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~T~~~~~~~~~~~~f~~l~~~G~iy~~~~~~~~p~--------------- 145 (339)
T cd00818 81 KCREFALRYIDEQEETFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLYEKGLLYRGYKVVPWPL--------------- 145 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHCHHCCCCCCEECCCHHHHHHHHHHHHHHHHCCCEECCCEEECCCC---------------
T ss_conf 99999999999999999983735147777121688999999999999998888626760536876---------------
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf 33456432233475233430344454432100225543222221000145576754535556777777513653200134
Q gi|254780802|r 177 GWRSDAPVEQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIRWEIVSNTIDQIEEILVYTTRPE 256 (869)
Q Consensus 177 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~TtrPe 256 (869)
T Consensus 146 --------~~~~~~~~F~~l~~~~~~ll~~~~~----------------------------------------------- 170 (339)
T cd00818 146 --------IYRATPQWFIRVEKLKDRLLEANDK----------------------------------------------- 170 (339)
T ss_pred --------CCEECCCEEEECHHHHHHHHHHHHC-----------------------------------------------
T ss_conf --------0058156799868999999987753-----------------------------------------------
Q ss_pred CCCCCCEEEEECCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEEEEEECCCCCCCC
Q ss_conf 44323200330244320345413145899988653111124555430255323786103777774157763112345453
Q gi|254780802|r 257 TIFGASFIAIAVDHSISEKLSCDNTDIKEFCDEEKQKGTSLSVLDKTEKKGIYTGIHVKHPLNPNVVIPVYIANFVFMNY 336 (869)
Q Consensus 257 Tl~g~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~P~~~~~~ipv~~~~~V~~~~ 336 (869)
T Consensus 171 ------------------------------------------------------------~---~~-~------------ 174 (339)
T cd00818 171 ------------------------------------------------------------V---NW-I------------ 174 (339)
T ss_pred ------------------------------------------------------------C---CE-E------------
T ss_conf ------------------------------------------------------------8---73-7------------
Q ss_pred CCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 33222111346721101221035443210167765554222112101233445830001356466548889999740467
Q gi|254780802|r 337 GTGAIFGCPFADQRDMDFAKKYGLPIIPIMKRSINHSQDIEEGKAFSGDGIMINSSFLDGMTNTEALQAVMSHLEKQNIK 416 (869)
Q Consensus 337 GTG~V~~~P~h~~~D~~~~~k~glpi~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~l~~~~~~ 416 (869)
T Consensus 175 --------p~~~-------~---------------------------------~-------------~~l~~~~~----- 188 (339)
T cd00818 175 --------PEWV-------K---------------------------------E-------------GRFGNWLE----- 188 (339)
T ss_pred --------CCHH-------H---------------------------------H-------------HHHHHHHH-----
T ss_conf --------8610-------6---------------------------------6-------------49999971-----
Q ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 75202221110001112211232222234223334684634742000111001000224542100245642110136764
Q gi|254780802|r 417 NSPIGKRKINFRLRDWCISRQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTWKKIFCVKCGSE 496 (869)
Q Consensus 417 ~~~~~~~~~~~~l~DW~ISRqr~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~ 496 (869)
T Consensus 189 -----------~l~Dw~ISR~~~WGipvP~w~~~~~~~~~---------------------------------------- 217 (339)
T cd00818 189 -----------NRRDWCISRQRYWGTPIPVWYSEDCGEVL---------------------------------------- 217 (339)
T ss_pred -----------CCCCCEEEECCCCCCCCCEEECCCCCCCC----------------------------------------
T ss_conf -----------68565044026667534635648998321----------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 43564323456664333223355565441013566411433440145554433202345553201347873223200222
Q gi|254780802|r 497 ALRETDTMDTFVDSSWYYMRYMTPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIGYIEIDEPFKRL 576 (869)
Q Consensus 497 ~~r~~dvld~w~dS~~~~~~~~~~~~~~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~g~~~~~~pf~~l 576 (869)
T Consensus 218 ~~~~~dv~yVWfDa~~~~~~~~~~----~~~~~~~~~~~p~~~~~~GkDi--~~~---~f~~~~~~~~~-~~~~~P~~~v 287 (339)
T cd00818 218 VRRVPDVLDVWFDSGSMPYAQLHY----PFENEDFEELFPADFILEGSDQ--TRG---WFYSLLLLSTA-LFGKAPYKNV 287 (339)
T ss_pred CCCCCCHHHHHHHCCCCHHHHCCC----CCCCHHHHCCCCCEEEEECCCC--CCH---HHHHHHHHHHH-HCCCCCCCEE
T ss_conf 003650177776356248987289----8643134138766056606331--233---79999998788-5489985214
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 23553232243323587001306202210256777544110489706404742100000012222100123463356665
Q gi|254780802|r 577 FTQGMVVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLF 656 (869)
Q Consensus 577 ~~~G~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~ 656 (869)
T Consensus 288 ~~hg~~l~-----------------------------------------~~G~KMSKS~GnvI~p~~~l~~y~~D~lRyy 326 (339)
T cd00818 288 IVHGFVLD-----------------------------------------EDGRKMSKSLGNVVDPQEVIDKYGADALRLW 326 (339)
T ss_pred EECCEEEC-----------------------------------------CCCCCCCCCCCCCCCHHHHHHHCCCHHHHHH
T ss_conf 88984999-----------------------------------------9986627889987898999987694799999
Q ss_pred HHHCCCCCCCCCC
Q ss_conf 5301332111113
Q gi|254780802|r 657 VLSDSPPDRDIIW 669 (869)
Q Consensus 657 ~~~~~~~~~d~~~ 669 (869)
T Consensus 327 l~~~~~~~~D~~F 339 (339)
T cd00818 327 VASSDVYAEDLRF 339 (339)
T ss_pred HHHCCCCCCCCCC
T ss_conf 9916888889999