HHsearch alignment for GI: 254780802 and conserved domain: cd07957
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases. This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA.
Probab=99.36 E-value=2.5e-11 Score=95.64 Aligned_cols=117 Identities=22% Similarity=0.311 Sum_probs=91.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 43210114556778899999763024667---897569999999999999999988168899999999999999999986
Q gi|254780802|r 670 SNKGVDSTYQFIQQIWRLIYNAKDELQTS---STKKDISLISKSTKFLERIEENYQNLSFNKAVANIHELVNVISKPLME 746 (869)
Q Consensus 670 s~~~i~~~~rfl~kl~~l~~~~~~~~~~~---~~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai~~i~~f~n~ls~~y~~ 746 (869)
T Consensus 2 N~~L~~~~GNLv~Rv~~~~~k~~~~~i~~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~al~~i~~l~~~~N~y~~~ 81 (129)
T cd07957 2 NSELANNLGNLVNRTLNMASKYFGGVVPEFGGLTEEDEELLEEAEELLEEVAEAMEELEFRKALEEIMELARAANKYIDE 81 (129)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88888799779999999999827997999877764139999999999999999998524999999999999999999996
Q ss_pred HCCCCC-----CCCHHHHHH---HHHHHHHHHHCCCHHHHHHHHHHHC
Q ss_conf 211000-----221799999---9999999997223438999999982
Q gi|254780802|r 747 IAKKKS-----NADRISTIR---YILEKLIIMMSPMIPHLAEECWQLL 786 (869)
Q Consensus 747 ~~k~~~-----~~~~~~~l~---~vl~~l~~lLaPi~PhiaEEiw~~L 786 (869)
T Consensus 82 ~~PW~l~K~~~~~~~~~vl~~~l~~~~~l~ilL~P~mP~~s~~i~~~L 129 (129)
T cd07957 82 TAPWKLAKEEDPERLATVLYVLLELLRILAILLSPFMPETAEKILDQL 129 (129)
T ss_pred CCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHC
T ss_conf 587988823029999999999999999999999757018999999719