HHsearch alignment for GI: 254780802 and conserved domain: cd07960
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.90 E-value=3.4e-23 Score=176.95 Aligned_cols=132 Identities=19% Similarity=0.395 Sum_probs=106.5
Q ss_pred CCHHHHHHHHHHHHH---HHHHHHCCCCCC--------CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-HH
Q ss_conf 210114556778899---999763024667--------897569999999999999999988168899999999999-99
Q gi|254780802|r 672 KGVDSTYQFIQQIWR---LIYNAKDELQTS--------STKKDISLISKSTKFLERIEENYQNLSFNKAVANIHELV-NV 739 (869)
Q Consensus 672 ~~i~~~~rfl~kl~~---l~~~~~~~~~~~--------~~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai~~i~~f~-n~ 739 (869)
T Consensus 4 ~iL~~~~e~~rKiwNt~RF~l~nl~~~~~~~~~~~~~~l~~lD~wiLs~l~~~~~~v~~~~~~y~f~~~~~~l~~F~~~~ 83 (180)
T cd07960 4 EILKQVAEAYRKIRNTFRFLLGNLNDFDPAKDAVPYEELLELDRYALHRLNELIKEVREAYENYEFHKVYQALNNFCTVD 83 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
T ss_conf 99999999999999999999986379994334589222879899999999999999999998389999999999994021
Q ss_pred HHHHHHHHCCCCCCCC---------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC---CCCEEECCCCCCCHH
Q ss_conf 9999986211000221---------799999999999999722343899999998289---983551788665967
Q gi|254780802|r 740 ISKPLMEIAKKKSNAD---------RISTIRYILEKLIIMMSPMIPHLAEECWQLLGN---AGLVAQQKWPKLDPI 803 (869)
Q Consensus 740 ls~~y~~~~k~~~~~~---------~~~~l~~vl~~l~~lLaPi~PhiaEEiw~~Lg~---~~~i~~~~WP~~d~~ 803 (869)
T Consensus 84 ls~~Yle~~K~rly~~~~~~~~r~~~~~~L~~vl~~~l~llaPi~Pf~tEeiw~~l~~~~~~~Si~l~~~P~~~~~ 159 (180)
T cd07960 84 LSAFYLDIIKDRLYCDAKDSLERRSAQTVLYHILDALLKLLAPILPFTAEEVWEHLPGEKKEESVFLEDWPELPEE 159 (180)
T ss_pred CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCEEECCCCCCCCC
T ss_conf 0359999977976158888389999999999999998987440004539999987566899997571489999801