HHsearch alignment for GI: 254780802 and conserved domain: cd07960

>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.90  E-value=3.4e-23  Score=176.95  Aligned_cols=132  Identities=19%  Similarity=0.395  Sum_probs=106.5

Q ss_pred             CCHHHHHHHHHHHHH---HHHHHHCCCCCC--------CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-HH
Q ss_conf             210114556778899---999763024667--------897569999999999999999988168899999999999-99
Q gi|254780802|r  672 KGVDSTYQFIQQIWR---LIYNAKDELQTS--------STKKDISLISKSTKFLERIEENYQNLSFNKAVANIHELV-NV  739 (869)
Q Consensus       672 ~~i~~~~rfl~kl~~---l~~~~~~~~~~~--------~~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai~~i~~f~-n~  739 (869)
T Consensus         4 ~iL~~~~e~~rKiwNt~RF~l~nl~~~~~~~~~~~~~~l~~lD~wiLs~l~~~~~~v~~~~~~y~f~~~~~~l~~F~~~~   83 (180)
T cd07960           4 EILKQVAEAYRKIRNTFRFLLGNLNDFDPAKDAVPYEELLELDRYALHRLNELIKEVREAYENYEFHKVYQALNNFCTVD   83 (180)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
T ss_conf             99999999999999999999986379994334589222879899999999999999999998389999999999994021


Q ss_pred             HHHHHHHHCCCCCCCC---------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC---CCCEEECCCCCCCHH
Q ss_conf             9999986211000221---------799999999999999722343899999998289---983551788665967
Q gi|254780802|r  740 ISKPLMEIAKKKSNAD---------RISTIRYILEKLIIMMSPMIPHLAEECWQLLGN---AGLVAQQKWPKLDPI  803 (869)
Q Consensus       740 ls~~y~~~~k~~~~~~---------~~~~l~~vl~~l~~lLaPi~PhiaEEiw~~Lg~---~~~i~~~~WP~~d~~  803 (869)
T Consensus        84 ls~~Yle~~K~rly~~~~~~~~r~~~~~~L~~vl~~~l~llaPi~Pf~tEeiw~~l~~~~~~~Si~l~~~P~~~~~  159 (180)
T cd07960          84 LSAFYLDIIKDRLYCDAKDSLERRSAQTVLYHILDALLKLLAPILPFTAEEVWEHLPGEKKEESVFLEDWPELPEE  159 (180)
T ss_pred             CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCEEECCCCCCCCC
T ss_conf             0359999977976158888389999999999999998987440004539999987566899997571489999801