Query gi|254780802|ref|YP_003065215.1| leucyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 869
No_of_seqs 178 out of 5707
Neff 8.2
Searched_HMMs 39220
Date Sun May 29 19:16:30 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780802.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00396 leuS_bact leucyl-tRN 100.0 0 0 1752.9 49.5 851 6-869 1-915 (916)
2 PRK00390 leuS leucyl-tRNA synt 100.0 0 0 1734.2 57.9 817 4-869 3-821 (822)
3 COG0495 LeuS Leucyl-tRNA synth 100.0 0 0 1509.8 48.8 801 4-869 3-814 (814)
4 TIGR00422 valS valyl-tRNA synt 100.0 0 0 1330.4 44.9 658 3-803 2-822 (970)
5 PRK06039 ileS isoleucyl-tRNA s 100.0 0 0 1312.7 41.6 693 3-804 2-793 (1042)
6 KOG0435 consensus 100.0 0 0 1310.5 36.6 815 8-869 32-866 (876)
7 TIGR00392 ileS isoleucyl-tRNA 100.0 0 0 1310.1 26.3 715 2-804 2-887 (938)
8 PRK05729 valS valyl-tRNA synth 100.0 0 0 1252.0 44.4 636 3-803 4-714 (877)
9 PRK05743 ileS isoleucyl-tRNA s 100.0 0 0 1247.0 43.0 679 4-801 17-786 (910)
10 PRK13208 valS valyl-tRNA synth 100.0 0 0 1233.3 44.4 640 3-804 6-728 (809)
11 COG0060 IleS Isoleucyl-tRNA sy 100.0 0 0 1233.5 33.6 693 4-804 16-799 (933)
12 PRK13804 ileS isoleucyl-tRNA s 100.0 0 0 1226.3 38.6 681 4-801 22-828 (966)
13 COG0525 ValS Valyl-tRNA synthe 100.0 0 0 1201.5 44.8 628 3-803 2-714 (877)
14 PRK12300 leuS leucyl-tRNA synt 100.0 0 0 1094.9 39.8 670 49-862 1-781 (888)
15 TIGR00395 leuS_arch leucyl-tRN 100.0 0 0 1108.1 26.9 716 10-804 2-924 (1109)
16 pfam00133 tRNA-synt_1 tRNA syn 100.0 0 0 1054.1 28.4 546 14-670 1-606 (606)
17 KOG0432 consensus 100.0 0 0 932.3 38.5 657 3-808 43-838 (995)
18 KOG0433 consensus 100.0 0 0 899.0 31.0 689 6-804 30-814 (937)
19 KOG0434 consensus 100.0 0 0 885.4 32.2 689 4-805 6-812 (1070)
20 KOG0437 consensus 100.0 0 0 738.7 26.0 704 7-802 13-884 (1080)
21 PRK12268 methionyl-tRNA synthe 100.0 0 0 614.5 31.0 495 34-799 3-521 (558)
22 PRK11893 methionyl-tRNA synthe 100.0 0 0 606.8 34.6 454 34-790 1-479 (512)
23 PRK12267 methionyl-tRNA synthe 100.0 0 0 582.0 33.5 455 33-790 3-480 (644)
24 PRK00133 metG methionyl-tRNA s 100.0 0 0 564.7 31.6 474 34-789 2-504 (666)
25 cd00817 ValRS_core This is the 100.0 0 0 571.4 17.0 346 34-669 1-363 (363)
26 cd00812 LeuRS_core This is the 100.0 0 0 535.1 20.3 347 35-669 1-376 (376)
27 cd00818 IleRS_core This is the 100.0 0 0 530.4 17.0 322 34-669 1-339 (339)
28 pfam09334 tRNA-synt_1g tRNA sy 100.0 0 0 508.3 21.9 376 36-691 1-387 (388)
29 cd00668 Ile_Leu_Val_MetRS_core 100.0 0 0 508.3 18.1 324 35-669 1-334 (334)
30 TIGR00398 metG methionyl-tRNA 100.0 0 0 492.1 29.5 488 36-789 1-541 (573)
31 COG0143 MetG Methionyl-tRNA sy 100.0 0 0 488.3 32.2 488 32-797 3-521 (558)
32 cd00814 MetRS_core This is the 100.0 0 0 351.0 19.7 132 35-168 1-132 (319)
33 KOG0436 consensus 100.0 0 0 335.4 24.7 471 32-797 37-537 (578)
34 KOG1247 consensus 100.0 5.4E-32 1.4E-36 237.3 21.6 490 30-794 10-526 (567)
35 pfam01406 tRNA-synt_1e tRNA sy 100.0 3.5E-33 9E-38 245.4 13.9 125 25-155 2-126 (301)
36 PRK00260 cysS cysteinyl-tRNA s 100.0 2.2E-26 5.5E-31 198.9 23.4 125 32-161 22-146 (460)
37 cd07961 Anticodon_Ia_Ile_ABEc 99.9 2.8E-26 7E-31 198.1 13.6 136 669-804 1-163 (183)
38 COG0215 CysS Cysteinyl-tRNA sy 99.9 3.4E-22 8.7E-27 170.1 18.8 122 36-161 23-146 (464)
39 cd07960 Anticodon_Ia_Ile_BEm A 99.9 3.4E-23 8.7E-28 177.0 13.3 132 672-803 4-159 (180)
40 cd07958 Anticodon_Ia_Leu_BEm A 99.9 1.1E-22 2.9E-27 173.3 12.9 112 669-786 1-117 (117)
41 cd07962 Anticodon_Ia_Val Antic 99.9 2E-22 5E-27 171.7 13.1 118 669-786 1-135 (135)
42 PRK12418 cysteinyl-tRNA synthe 99.9 1.3E-20 3.4E-25 159.2 19.4 116 36-154 10-125 (384)
43 TIGR03447 mycothiol_MshC cyste 99.9 1.2E-20 3E-25 159.5 19.1 115 38-155 39-153 (411)
44 pfam08264 Anticodon_1 Anticodo 99.9 1.9E-21 4.9E-26 164.9 12.6 100 703-802 1-108 (148)
45 cd07959 Anticodon_Ia_Leu_AEc A 99.8 9E-19 2.3E-23 146.6 13.1 114 669-786 1-117 (117)
46 KOG2007 consensus 99.8 8E-17 2.1E-21 133.3 20.9 129 619-748 294-428 (586)
47 cd07375 Anticodon_Ia_like Anti 99.6 2.5E-15 6.5E-20 123.0 11.6 104 671-775 1-117 (117)
48 TIGR00435 cysS cysteinyl-tRNA 99.5 1E-13 2.6E-18 111.9 9.1 127 615-742 398-538 (660)
49 cd00802 class_I_aaRS_core Clas 99.4 3.1E-13 7.9E-18 108.7 4.5 73 37-114 1-73 (142)
50 cd07957 Anticodon_Ia_Met Antic 99.4 2.5E-11 6.3E-16 95.6 12.8 117 670-786 2-129 (129)
51 TIGR00395 leuS_arch leucyl-tRN 99.2 4.4E-12 1.1E-16 100.8 1.1 179 397-607 555-756 (1109)
52 COG0018 ArgS Arginyl-tRNA synt 99.0 1.7E-08 4.3E-13 76.2 14.4 122 626-748 379-538 (577)
53 PRK01611 argS arginyl-tRNA syn 99.0 5.9E-08 1.5E-12 72.5 14.6 120 626-746 373-529 (570)
54 PRK12451 arginyl-tRNA syntheta 98.9 4.9E-08 1.3E-12 73.0 11.4 120 626-746 367-523 (562)
55 cd00672 CysRS_core This is the 98.8 8.3E-10 2.1E-14 85.2 0.6 87 34-120 19-105 (213)
56 pfam00750 tRNA-synt_1d tRNA sy 98.8 7.4E-08 1.9E-12 71.8 9.8 59 33-91 18-76 (345)
57 cd00672 CysRS_core This is the 98.7 4.3E-08 1.1E-12 73.4 7.3 49 621-670 165-213 (213)
58 PRK01611 argS arginyl-tRNA syn 98.6 4.7E-07 1.2E-11 66.3 10.4 119 32-154 116-283 (570)
59 PRK12451 arginyl-tRNA syntheta 98.6 1E-06 2.6E-11 64.0 11.5 121 32-156 111-283 (562)
60 PRK00750 lysK lysyl-tRNA synth 98.5 1.3E-06 3.4E-11 63.2 8.9 63 623-685 278-342 (513)
61 TIGR00456 argS arginyl-tRNA sy 98.4 6.3E-06 1.6E-10 58.6 11.4 204 539-772 353-593 (600)
62 COG0018 ArgS Arginyl-tRNA synt 98.4 6.4E-06 1.6E-10 58.5 10.8 151 7-160 89-296 (577)
63 cd00671 ArgRS_core This is the 98.4 2.9E-06 7.3E-11 60.9 9.0 54 38-91 4-57 (267)
64 KOG0437 consensus 98.3 9.3E-08 2.4E-12 71.1 0.3 150 423-605 559-726 (1080)
65 cd00674 LysRS_core_class_I Thi 98.3 3.3E-07 8.3E-12 67.4 2.7 50 32-82 17-66 (354)
66 TIGR00456 argS arginyl-tRNA sy 98.3 1.8E-06 4.6E-11 62.3 6.0 66 11-76 95-160 (600)
67 COG0495 LeuS Leucyl-tRNA synth 98.1 6.8E-08 1.7E-12 72.1 -3.8 102 248-356 208-312 (814)
68 PRK04156 gltX glutamyl-tRNA sy 98.1 2.2E-05 5.6E-10 54.9 8.5 98 34-153 98-197 (566)
69 pfam01921 tRNA-synt_1f tRNA sy 98.0 4.2E-06 1.1E-10 59.8 3.6 49 33-82 18-66 (355)
70 cd00807 Gln_GluRS_non_core Glu 98.0 1.4E-05 3.5E-10 56.2 5.9 90 38-151 3-94 (238)
71 COG1384 LysS Lysyl-tRNA synthe 97.9 0.00015 3.9E-09 49.1 9.8 58 626-684 273-335 (521)
72 COG0008 GlnS Glutamyl- and glu 97.8 5.7E-05 1.5E-09 52.0 5.9 93 37-153 10-105 (472)
73 pfam00749 tRNA-synt_1c tRNA sy 97.8 7.6E-05 1.9E-09 51.2 6.4 92 39-152 4-96 (314)
74 cd00418 GlxRS_core Glutamyl-tR 97.8 6.3E-05 1.6E-09 51.7 5.6 86 39-148 4-92 (223)
75 pfam01921 tRNA-synt_1f tRNA sy 97.7 0.00014 3.6E-09 49.3 7.2 51 623-674 271-321 (355)
76 TIGR00463 gltX_arch glutamyl-t 97.7 1.1E-05 2.9E-10 56.8 1.3 110 35-176 100-213 (600)
77 cd00674 LysRS_core_class_I Thi 97.7 0.00014 3.6E-09 49.3 6.9 48 623-671 268-316 (354)
78 PRK05347 glutaminyl-tRNA synth 97.7 0.00024 6.2E-09 47.7 7.4 96 33-152 26-124 (556)
79 PRK05710 glutamyl-Q tRNA(Asp) 97.6 9.7E-05 2.5E-09 50.4 4.8 92 38-151 6-98 (299)
80 PRK12410 glutamyl-tRNA synthet 97.6 0.00028 7.1E-09 47.3 6.7 87 42-152 5-93 (433)
81 PRK00750 lysK lysyl-tRNA synth 97.6 0.00057 1.5E-08 45.2 8.2 89 36-124 30-138 (513)
82 PRK12558 glutamyl-tRNA synthet 97.5 0.00039 9.9E-09 46.3 6.4 89 42-152 8-96 (461)
83 TIGR00435 cysS cysteinyl-tRNA 97.1 0.00011 2.9E-09 50.0 0.6 109 42-172 29-148 (660)
84 pfam00750 tRNA-synt_1d tRNA sy 97.1 0.00018 4.5E-09 48.7 1.2 46 624-670 273-344 (345)
85 cd00802 class_I_aaRS_core Clas 97.1 0.00026 6.6E-09 47.5 1.8 63 503-584 71-133 (142)
86 PRK01406 gltX glutamyl-tRNA sy 96.9 0.0039 9.8E-08 39.5 6.3 89 42-152 8-97 (467)
87 cd00808 GluRS_core Descriminat 96.8 0.0011 2.8E-08 43.3 3.0 63 41-121 6-68 (239)
88 COG1384 LysS Lysyl-tRNA synthe 96.8 0.0064 1.6E-07 37.9 6.9 89 34-123 19-126 (521)
89 PRK12284 tryptophanyl-tRNA syn 96.7 0.0063 1.6E-07 38.0 6.4 29 626-659 198-226 (436)
90 TIGR00440 glnS glutaminyl-tRNA 96.5 0.0033 8.5E-08 39.9 3.8 106 41-179 5-110 (564)
91 cd02156 nt_trans nt_trans (nuc 96.4 0.0013 3.2E-08 42.8 1.3 73 41-123 2-74 (147)
92 PRK12556 tryptophanyl-tRNA syn 96.3 0.079 2E-06 30.5 12.7 27 626-657 197-223 (328)
93 TIGR00392 ileS isoleucyl-tRNA 96.3 0.0055 1.4E-07 38.4 4.3 53 109-161 28-84 (938)
94 PRK00574 gltX glutamyl-tRNA sy 96.3 0.014 3.6E-07 35.6 6.4 90 42-153 10-108 (489)
95 cd07956 Anticodon_Ia_Arg Antic 96.1 0.11 2.7E-06 29.6 10.7 101 646-747 1-117 (156)
96 KOG4426 consensus 96.0 0.12 3.1E-06 29.2 9.7 46 703-748 567-613 (656)
97 PRK12283 tryptophanyl-tRNA syn 95.9 0.13 3.3E-06 29.0 11.5 28 627-659 261-288 (398)
98 KOG1147 consensus 95.8 0.069 1.8E-06 30.9 7.9 109 37-175 201-309 (712)
99 PRK12282 tryptophanyl-tRNA syn 95.6 0.16 4.2E-06 28.3 11.0 25 629-658 195-219 (333)
100 KOG1148 consensus 95.5 0.083 2.1E-06 30.3 7.3 96 36-160 248-345 (764)
101 COG0060 IleS Isoleucyl-tRNA sy 95.4 0.016 4.1E-07 35.2 3.3 45 392-436 366-422 (933)
102 PRK06039 ileS isoleucyl-tRNA s 94.5 0.034 8.7E-07 33.0 3.0 19 589-607 594-612 (1042)
103 PRK08560 tyrosyl-tRNA syntheta 93.8 0.24 6.2E-06 27.1 6.2 17 628-644 218-235 (333)
104 PRK13354 tyrosyl-tRNA syntheta 93.4 0.034 8.8E-07 33.0 1.4 19 625-643 224-243 (405)
105 PRK00927 tryptophanyl-tRNA syn 93.4 0.53 1.4E-05 24.8 9.7 27 627-658 189-218 (325)
106 PRK13354 tyrosyl-tRNA syntheta 92.9 0.42 1.1E-05 25.5 6.2 78 33-116 35-115 (405)
107 KOG1195 consensus 92.8 0.64 1.6E-05 24.2 11.2 109 639-748 404-529 (567)
108 PRK12300 leuS leucyl-tRNA synt 92.7 0.063 1.6E-06 31.2 1.9 46 425-478 355-400 (888)
109 PRK13208 valS valyl-tRNA synth 92.6 0.11 2.8E-06 29.6 2.9 18 589-606 538-555 (809)
110 cd00805 TyrRS_core Tyrosinyl-t 92.5 0.056 1.4E-06 31.5 1.3 15 626-640 190-204 (268)
111 cd00805 TyrRS_core Tyrosinyl-t 92.3 0.42 1.1E-05 25.5 5.6 76 45-125 9-87 (268)
112 KOG0434 consensus 91.3 0.15 3.8E-06 28.6 2.4 102 122-225 309-450 (1070)
113 PRK13804 ileS isoleucyl-tRNA s 91.0 0.27 7E-06 26.8 3.5 18 589-606 636-653 (966)
114 COG0180 TrpS Tryptophanyl-tRNA 91.0 0.1 2.7E-06 29.7 1.4 17 627-643 194-212 (314)
115 PRK05912 tyrosyl-tRNA syntheta 90.6 0.42 1.1E-05 25.5 4.1 17 627-643 222-239 (402)
116 PRK05729 valS valyl-tRNA synth 90.6 0.36 9.2E-06 26.0 3.8 17 589-605 522-538 (877)
117 PRK12285 tryptophanyl-tRNA syn 89.9 1.3 3.2E-05 22.2 9.3 15 627-641 250-265 (369)
118 PRK08560 tyrosyl-tRNA syntheta 89.2 0.2 5.2E-06 27.7 1.6 104 32-150 27-132 (333)
119 COG0525 ValS Valyl-tRNA synthe 89.0 0.45 1.1E-05 25.3 3.3 15 590-604 526-540 (877)
120 TIGR00422 valS valyl-tRNA synt 88.1 0.43 1.1E-05 25.4 2.7 65 212-281 232-304 (970)
121 pfam00579 tRNA-synt_1b tRNA sy 87.5 0.59 1.5E-05 24.5 3.1 18 627-644 193-212 (291)
122 cd00806 TrpRS_core Tryptophany 87.2 1.9 4.8E-05 21.1 5.6 20 536-556 138-157 (282)
123 cd00395 Tyr_Trp_RS_core Tyrosi 86.8 1.1 2.7E-05 22.8 4.1 26 629-659 186-212 (274)
124 COG0162 TyrS Tyrosyl-tRNA synt 86.5 0.74 1.9E-05 23.8 3.2 14 626-639 220-233 (401)
125 PTZ00126 tyrosyl-tRNA syntheta 86.4 1.5 3.8E-05 21.7 4.7 21 533-553 223-243 (399)
126 COG0143 MetG Methionyl-tRNA sy 85.3 0.29 7.3E-06 26.7 0.6 41 166-206 164-204 (558)
127 TIGR00464 gltX_bact glutamyl-t 84.2 0.46 1.2E-05 25.3 1.2 92 43-153 8-105 (513)
128 TIGR00467 lysS_arch lysyl-tRNA 81.3 3.3 8.5E-05 19.4 4.8 63 627-689 279-342 (539)
129 TIGR00233 trpS tryptophanyl-tR 71.2 2.4 6.1E-05 20.3 1.7 16 628-643 221-239 (366)
130 TIGR02220 phg_TIGR02220 phage 63.8 3.3 8.4E-05 19.4 1.2 36 213-262 40-75 (83)
131 pfam01927 DUF82 Protein of unk 62.7 4.5 0.00012 18.4 1.7 89 63-168 12-101 (146)
132 CHL00040 rbcL ribulose-1,5-bis 62.3 9 0.00023 16.4 3.5 18 705-722 443-460 (477)
133 TIGR00381 cdhD CO dehydrogenas 61.7 9.3 0.00024 16.3 3.4 11 660-670 331-341 (401)
134 pfam01314 AFOR_C Aldehyde ferr 57.0 11 0.00028 15.8 3.5 12 668-679 297-308 (382)
135 COG5270 PUA domain (predicted 55.9 3.9 9.8E-05 18.9 0.4 26 145-170 2-27 (202)
136 TIGR02295 HpaD 3,4-dihydroxyph 55.3 4 0.0001 18.8 0.4 22 278-299 69-90 (312)
137 cd07963 Anticodon_Ia_Cys Antic 54.5 12 0.00031 15.5 9.0 64 671-743 1-65 (156)
138 KOG1149 consensus 51.9 12 0.00031 15.5 2.4 21 764-784 439-459 (524)
139 PRK11866 2-oxoacid ferredoxin 51.1 5.3 0.00014 18.0 0.5 16 150-165 8-23 (286)
140 KOG3361 consensus 50.1 6.4 0.00016 17.4 0.8 19 330-349 47-65 (157)
141 TIGR01316 gltA glutamate synth 49.0 6.2 0.00016 17.5 0.5 27 394-420 315-341 (462)
142 PRK13794 hypothetical protein; 47.9 12 0.00031 15.4 1.9 33 149-186 2-34 (473)
143 TIGR01828 pyru_phos_dikin pyru 47.6 15 0.00039 14.8 6.1 37 821-857 747-784 (920)
144 PRK13795 hypothetical protein; 46.5 11 0.00029 15.7 1.6 33 148-185 3-35 (630)
145 PRK11869 2-oxoacid ferredoxin 46.3 7.2 0.00018 17.0 0.5 17 149-165 4-20 (284)
146 TIGR01405 polC_Gram_pos DNA po 46.0 16 0.00041 14.6 2.6 69 309-377 705-778 (1264)
147 smart00531 TFIIE Transcription 39.8 20 0.00051 14.0 2.6 15 158-172 100-114 (147)
148 pfam04405 ScdA_N Domain of Unk 36.9 22 0.00057 13.7 2.0 47 56-102 2-49 (56)
149 TIGR00357 TIGR00357 methionine 34.2 11 0.00029 15.7 0.0 21 490-514 43-65 (135)
150 COG1656 Uncharacterized conser 33.5 20 0.00051 14.0 1.2 19 63-81 18-37 (165)
151 pfam07223 DUF1421 Protein of u 31.8 19 0.00048 14.2 0.8 40 632-671 313-357 (359)
152 pfam06172 Cupin_5 Cupin superf 29.8 29 0.00073 12.9 2.1 30 327-356 108-139 (139)
153 TIGR02199 rfaE_dom_II rfaE bif 29.7 18 0.00047 14.3 0.5 15 392-406 128-142 (144)
154 pfam02744 GalP_UDP_tr_C Galact 28.9 30 0.00076 12.8 2.3 11 341-351 100-110 (168)
155 pfam11931 DUF3449 Domain of un 28.7 17 0.00044 14.5 0.1 14 630-643 165-178 (187)
156 COG4905 Predicted membrane pro 28.5 24 0.0006 13.5 0.8 28 135-162 14-45 (243)
157 pfam05527 DUF758 Domain of unk 28.4 30 0.00077 12.8 9.0 75 665-739 75-149 (186)
158 COG1198 PriA Primosomal protei 25.6 34 0.00087 12.4 3.5 20 433-456 426-445 (730)
159 COG3634 AhpF Alkyl hydroperoxi 25.5 31 0.00079 12.7 1.0 16 488-503 342-357 (520)
160 KOG2623 consensus 25.4 27 0.00069 13.1 0.7 39 625-667 268-306 (467)
161 KOG1359 consensus 25.4 34 0.00087 12.4 5.4 61 772-850 344-414 (417)
162 TIGR02889 spore_YpeB germinati 25.3 34 0.00087 12.4 3.9 17 397-413 238-254 (465)
163 TIGR00018 panC pantoate--beta- 24.9 22 0.00056 13.7 0.2 21 789-809 257-277 (310)
164 cd03000 PDI_a_TMX3 PDIa family 24.8 27 0.0007 13.1 0.6 30 141-171 9-38 (104)
165 TIGR02652 TIGR02652 conserved 24.8 33 0.00083 12.6 1.0 18 158-175 11-28 (172)
166 TIGR01011 rpsB_bact ribosomal 24.6 33 0.00084 12.5 1.0 12 537-548 196-207 (227)
167 cd00736 bacteriophage_lambda_l 24.4 36 0.00091 12.3 5.0 60 672-733 61-120 (151)
168 TIGR02196 GlrX_YruB Glutaredox 23.7 19 0.00049 14.2 -0.4 10 155-164 5-14 (79)
169 pfam12621 DUF3779 Phosphate me 23.2 38 0.00096 12.1 1.5 24 151-174 41-64 (95)
170 PRK09628 oorB 2-oxoglutarate-a 23.0 21 0.00053 13.9 -0.3 19 149-167 8-26 (281)
171 smart00836 DALR_1 DALR anticod 22.8 38 0.00098 12.1 6.7 48 700-747 35-82 (122)
172 PRK11867 2-oxoglutarate ferred 22.5 29 0.00074 12.9 0.4 18 151-168 10-27 (280)
173 KOG0614 consensus 22.5 39 0.00099 12.0 2.6 22 248-269 213-234 (732)
174 COG2069 CdhD CO dehydrogenase/ 22.5 30 0.00076 12.8 0.4 23 766-788 364-386 (403)
175 KOG2713 consensus 22.2 39 0.001 12.0 5.4 12 627-638 208-219 (347)
176 TIGR02902 spore_lonB ATP-depen 22.1 37 0.00094 12.2 0.8 35 506-544 204-239 (532)
177 TIGR01127 ilvA_1Cterm threonin 21.6 33 0.00085 12.5 0.5 64 257-324 68-132 (381)
178 TIGR02699 archaeo_AfpA archaeo 21.2 41 0.001 11.9 1.7 16 257-272 56-71 (176)
179 pfam05746 DALR_1 DALR anticodo 20.7 42 0.0011 11.8 8.8 48 700-747 31-78 (117)
180 TIGR01393 lepA GTP-binding pro 20.3 43 0.0011 11.7 2.1 57 354-411 118-181 (598)
No 1
>TIGR00396 leuS_bact leucyl-tRNA synthetase; InterPro: IPR002302 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Leucyl tRNA synthetase (6.1.1.4 from EC) is an alpha monomer that belongs to class Ia. There are two different families of leucyl-tRNA synthetases. This family includes the eubacterial and mitochondrial synthetases. The crystal structure of leucyl-tRNA synthetase from the hyperthermophile Thermus thermophilus has an overall architecture that is similar to that of isoleucyl-tRNA synthetase, except that the putative editing domain is inserted at a different position in the primary structure. This feature is unique to prokaryote-like leucyl-tRNA synthetases, as is the presence of a novel additional flexibly inserted domain . ; GO: 0000166 nucleotide binding, 0004823 leucine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006429 leucyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=1752.89 Aligned_cols=851 Identities=44% Similarity=0.845 Sum_probs=800.9
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCC--CCCCCEEEEECCCCCCCC-CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 5689998999999998598036767--888838998077897898-7400477977899999977718985567688140
Q gi|254780802|r 6 YSPQETDSIWQSAWYDSNIFKAENG--KNKKKYFVLEMFPYPSGN-IHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDA 82 (869)
Q Consensus 6 y~~~~iE~kwq~~W~~~~~fe~~~~--~~~~kf~i~~~pPy~nG~-lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~ 82 (869)
|++.+||+|||++|.++++|+...+ ++++|||++++||||||. |||||.|+|||.||++||+||+|||||||||||.
T Consensus 1 y~~~~IE~KWq~~W~~~~~~~~~~dpi~~~~K~YiL~MFPYPSG~GLH~GHvR~YTItDvl~Ry~r~~GynVLHP~GwDA 80 (916)
T TIGR00396 1 YNHIEIEKKWQQKWAENKTFKTTDDPISNKPKYYILSMFPYPSGAGLHMGHVRNYTITDVLSRYKRMKGYNVLHPMGWDA 80 (916)
T ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 97000115788873237856520055455786466237879560775016514235764999999862883247667574
Q ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCCC
Q ss_conf 20589999998099999999999999999999819176646982147735999999999999988963412213321477
Q gi|254780802|r 83 FGMPAENAAREHNVHPKMWTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPV 162 (869)
Q Consensus 83 ~GlPie~~~~e~~~~~~~~~~~~i~~~k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~pV~wcp~ 162 (869)
+|||+|++|++++.+|..||++||+.||+||+.||+++||+||..|+||+||+|+||+|.+||++||+|+...+|||||.
T Consensus 81 FGLPAEnaAI~~~~~P~~WT~~NI~~m~~Ql~~LGf~yDw~RE~~T~~P~YYkwtQWiF~~Lf~kGLaY~ke~~VNWCP~ 160 (916)
T TIGR00396 81 FGLPAENAAIKRGIHPAKWTYENIANMKKQLQALGFSYDWDREIATCDPEYYKWTQWIFLELFEKGLAYVKEATVNWCPN 160 (916)
T ss_pred CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEEECCC
T ss_conf 56425899986489870037899999999999845564411053238887433666888999762852763111330677
Q ss_pred CCCCCCHHHHH---CC--CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 67677898984---38--533456432233475233430344454432100225-5432222210001455767545355
Q gi|254780802|r 163 EQTVLANEQVI---NG--RGWRSDAPVEQRSLPQWFFKISDLSQELLDSIETLS-EWPEKVKIMQKNWIGRSEGMEIRWE 236 (869)
Q Consensus 163 ~~t~la~~Ev~---~g--~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~l~-~~p~~v~~~~~~~i~~~~~~~~~~~ 236 (869)
++|+|||.||. +| .||||+++||+++++|||+|+|+||++|+.+++.|. +||+.|+.||+||||+|+|+++.|.
T Consensus 161 d~TVLANEqVi~DS~Gna~SwR~~~~Vekk~l~QW~LKIT~YAe~LL~dLe~L~D~WP~~VK~MQrNWIGkS~Gv~~~F~ 240 (916)
T TIGR00396 161 DGTVLANEQVIIDSDGNARSWRGGTPVEKKELKQWFLKITAYAEELLNDLEELDDHWPESVKEMQRNWIGKSEGVEITFK 240 (916)
T ss_pred CCCCCCCHHEEECCCCCCEEECCCCCEEEEECCCCEEHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCEEEEEEEEEE
T ss_conf 78451020301227898532248784466306751011337889854114204678873136404545655520489974
Q ss_pred CCCC---CCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCHHHHHCCHH--HHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 5677---777751365320013444323200330244320345413145--89998865311112455543025532378
Q gi|254780802|r 237 IVSN---TIDQIEEILVYTTRPETIFGASFIAIAVDHSISEKLSCDNTD--IKEFCDEEKQKGTSLSVLDKTEKKGIYTG 311 (869)
Q Consensus 237 ~~~~---~~~~~~~l~~~TtrPeTl~g~~~i~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 311 (869)
+.+. .-.+.+.|.|+||||+|+||+|+++++|+|+++++.+..+.. +.+|+.+..+........+..++.|.++|
T Consensus 241 i~d~clkacn~~e~i~VFTTRPdT~fGvtYlalA~~HpLv~~~~~~~~~~~v~~fi~~~~~~~~~~~~~~~~~k~Gv~tg 320 (916)
T TIGR00396 241 IADHCLKACNKKEKIAVFTTRPDTIFGVTYLALAPEHPLVEKIAKNNPKEEVAAFIKKIAQKSDLERTKETKEKKGVFTG 320 (916)
T ss_pred ECCCHHHHCCCCCEEEEEECCCCCEEEEEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCC
T ss_conf 25731210378751699866863010026576615785899997408467899999998730705555664201464668
Q ss_pred CEECCCCCCCEEEEEEECCCCCCCCCCC--CCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCC
Q ss_conf 6103777774157763112345453332--22111346721101221035443210167765554222112101233445
Q gi|254780802|r 312 IHVKHPLNPNVVIPVYIANFVFMNYGTG--AIFGCPFADQRDMDFAKKYGLPIIPIMKRSINHSQDIEEGKAFSGDGIMI 389 (869)
Q Consensus 312 ~~~~~P~~~~~~ipv~~~~~V~~~~GTG--~V~~~P~h~~~D~~~~~k~glpi~~v~~~~~~~~~~~~~~~~~~~~~~~~ 389 (869)
.+++||+|++ .|||+.|+||..++||| +||.||||+++||+++++|+||+.+|+........++....++..+|+.+
T Consensus 321 ~~AihPlT~e-~iPiwvAnYVl~~YGTgPsAVMGVPaHDeRDF~FA~~~~Lpi~~Vi~~~~~~~~~~~~~~A~t~~g~~~ 399 (916)
T TIGR00396 321 IYAIHPLTGE-KIPIWVANYVLASYGTGPSAVMGVPAHDERDFEFAQKYKLPIKVVIDPADADGKNLKLEQAYTEDGVLV 399 (916)
T ss_pred CEEECCCCCC-CCCEEEECEEECCCCCCCHHCCCCCCCCCCHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHCCCEE
T ss_conf 6363476776-445576330011578985020358888741279998578971587527776675115667676465221
Q ss_pred CC------------HHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEC
Q ss_conf 83------------000135646654888999974046775202221110001112211232222234223334684634
Q gi|254780802|r 390 NS------------SFLDGMTNTEALQAVMSHLEKQNIKNSPIGKRKINFRLRDWCISRQRSWGCPIPVIHCQKCGIVEL 457 (869)
Q Consensus 390 ~~------------~~~~g~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~DW~ISRqr~WG~piPv~~~~~~~~~~~ 457 (869)
|+ +.++|+...+|++.|+..|++.+. |+++|+||||||.||||||||+||||.+|++|+.+++
T Consensus 400 ns~tstdGvltkeC~~f~Gl~~~~A~~~I~~~L~~~~~-----gk~~v~YrLRDW~~SRQRYWG~PIPiih~e~g~~~P~ 474 (916)
T TIGR00396 400 NSSTSTDGVLTKECGEFNGLNSSEAKEAIIKMLEKEGK-----GKRKVNYRLRDWLFSRQRYWGEPIPIIHCEDGGAVPV 474 (916)
T ss_pred CCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCC-----CCEEEEEEEECCCEEEECCCCCCCCEEEECCCCCCCC
T ss_conf 68765344101000222377617899999999986388-----5021234653253440002688987788067684244
Q ss_pred CCCCCCHHHHCCCCCCCCC---CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CC------CCCH
Q ss_conf 7420001110010002245---421002456421101367644356432345666433322335556-54------4101
Q gi|254780802|r 458 PKEDLPVQLPEDLDFTLPG---NPLENHPTWKKIFCVKCGSEALRETDTMDTFVDSSWYYMRYMTPH-AK------DPIN 527 (869)
Q Consensus 458 ~~~~l~v~~~~d~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~r~~dvld~w~dS~~~~~~~~~~~-~~------~~~~ 527 (869)
+.+||||+||++..+.+.| +||+..++|.++.|++|+.+++||+||||+|.+|||||+||++|+ +. .+++
T Consensus 475 ~~~dLPv~LP~~~~~~~~G~~~sPL~~~~~W~~v~~~~~~~~A~RETdTMdtf~~SsWYylRY~~p~~n~~FWPi~~~~d 554 (916)
T TIGR00396 475 PEEDLPVKLPELVNYDGSGTGESPLSRIKEWVNVTCPSCGKPALRETDTMDTFIGSSWYYLRYLDPKNNTNFWPIDQPFD 554 (916)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 34468710750023578889888043074632414788798754337876305777899986035001766687321302
Q ss_pred HHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCC-EEECC-C
Q ss_conf 356641143344014555443320234555320134787322----32002222355323224332358700-13062-0
Q gi|254780802|r 528 KELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIGYIEI----DEPFKRLFTQGMVVHETYYQLEGIKK-KYLKP-D 601 (869)
Q Consensus 528 ~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~g~~~~----~~pf~~l~~~G~v~~~~~~~~~~~~~-~~~~p-~ 601 (869)
+|.+++|+|||+||||++|+||||+|+||||++|.+.|.+.. +|||++|++||||++.++........ .|..| .
T Consensus 555 ~e~~~~wlPVD~YiGG~EHAiLHLLY~RF~hK~L~D~g~v~~PaGi~EPFkKL~~QGMVlg~~f~y~~~~g~~~W~~p~d 634 (916)
T TIGR00396 555 KEKAEYWLPVDLYIGGIEHAILHLLYARFFHKFLYDLGLVSTPAGIKEPFKKLINQGMVLGDAFYYKKPNGKRIWVVPAD 634 (916)
T ss_pred HHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCEEECCCEEECCCCCCEEEEECCC
T ss_conf 78897558844102626899899888899999997457615877665714554200002116134138997367764575
Q ss_pred HHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 22102567775441104897064047421000000122221001234633566655301332111113432101145567
Q gi|254780802|r 602 EVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDIIWSNKGVDSTYQFI 681 (869)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~~~~~~~~~~d~~~s~~~i~~~~rfl 681 (869)
.+..++-.+...-+....++..+....+||||||||+|+|.++|++|||||+|||+|++||+..++.|++++|+|++|||
T Consensus 635 ~~~~~d~~~d~~~~~d~~~~~~~~~~~~KMSKSK~N~i~P~e~~~~yGADa~Rlf~mF~~P~~~~L~W~~~g~~G~~RFL 714 (916)
T TIGR00396 635 ELIERDEKGDIKKAKDKSGGELVVVGYEKMSKSKGNGIDPQEIVKKYGADALRLFIMFMGPIAASLEWNESGLEGARRFL 714 (916)
T ss_pred CEEECCCCCCCCCCEECCCCCEEEEEEEEECCCCCCCCCCHHHHHHCCHHHHHHHHHHCCCHHHCCCCCCCCHHHHHHHH
T ss_conf 16610466786542325888247887776202367988703897404802799999704883141477711101356888
Q ss_pred HHHHHHHHHHHCCCCC--------------CCCHHHHHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHH
Q ss_conf 7889999976302466--------------7897569999999999999999988168--89999999999999999998
Q gi|254780802|r 682 QQIWRLIYNAKDELQT--------------SSTKKDISLISKSTKFLERIEENYQNLS--FNKAVANIHELVNVISKPLM 745 (869)
Q Consensus 682 ~kl~~l~~~~~~~~~~--------------~~~~~D~~ils~~~~~i~~v~~~~e~~~--f~~ai~~i~~f~n~ls~~y~ 745 (869)
+|+|+|.......... ..+..++.+.+.+|++|++|+++++.-+ ||+||+++|.|+|.|.+.-.
T Consensus 715 ~RVw~l~~~~~~~~~~~~~avrP~~~~~~~~l~~~~~~~~~~~~~~lk~v~e~~~~~~~~fNT~IS~~M~l~N~L~k~~~ 794 (916)
T TIGR00396 715 DRVWNLVKEILGELSGIISAVRPKTELTETALEEAQKELRREVHKFLKKVTEDLEKLELSFNTAISAMMELLNALYKATK 794 (916)
T ss_pred HHHHHHHHHHCCCHHHEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999998732660002554246100343112304689999999999888753176201355899999999999873102
Q ss_pred HHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC-CCCCEEECCCCCCCHHHHHCCC-CEEEEEECCEE--E
Q ss_conf 621100022179999999999999972234389999999828-9983551788665967860377-14989973816--6
Q gi|254780802|r 746 EIAKKKSNADRISTIRYILEKLIIMMSPMIPHLAEECWQLLG-NAGLVAQQKWPKLDPILEVNTD-IILPIQVNGKK--R 821 (869)
Q Consensus 746 ~~~k~~~~~~~~~~l~~vl~~l~~lLaPi~PhiaEEiw~~Lg-~~~~i~~~~WP~~d~~~~~~~~-~~~~iqingk~--r 821 (869)
++....++.+.++.++++|+||+||+|||||+.|| ..+.++.+.||++|+.++..+. ++++||||||. |
T Consensus 795 -------~ge~~~~~~e~~~~~~~~L~P~aPhlaeELwe~lg~~~~~~~~~~w~~~D~~~l~~d~k~~iv~~~nGK~my~ 867 (916)
T TIGR00396 795 -------DGEDRALYLEYLKGLVTVLSPFAPHLAEELWEKLGSEPSIIKQAKWPKVDETALVEDKKVEIVVQVNGKVMYR 867 (916)
T ss_pred -------CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHCCHHHCHHHHHCCCEEEEEEEEEEEEEEE
T ss_conf -------3411588999999899885152016899999985777001544112021246541252058999974268986
Q ss_pred EEEECCCCCCHHHHHHHHHCCHHHHHHHCCCCCEEEEECCCCEEEEEC
Q ss_conf 799808888999999999747888998469982599981890575779
Q gi|254780802|r 822 ACITVSMNTDDDFIKKTVLELNVIKNILQGKSPKKIIIISKRIVNIVV 869 (869)
Q Consensus 822 ~~i~v~~~~~~~~i~~~~~~~~~i~~~l~~k~~~k~I~v~~klin~vi 869 (869)
+++++++++++++|+.++.+++.+++.|.+++|+||||||+|||||||
T Consensus 868 a~~~v~~~a~e~~~~~~a~~d~~~~~~L~n~~i~Kvi~V~~klvN~v~ 915 (916)
T TIGR00396 868 AKITVPKDADEEQVEELAKADEEVKKYLENKTIKKVIYVPGKLVNFVI 915 (916)
T ss_pred EEEEECCCCCHHHHHHHHHCCHHHHHHHCCCCEEEEEEECCCEEEEEE
T ss_conf 767750678889999997129688985358961799997483898874
No 2
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=100.00 E-value=0 Score=1734.22 Aligned_cols=817 Identities=49% Similarity=0.934 Sum_probs=758.8
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 76568999899999999859803676788883899807789789874004779778999999777189855676881402
Q gi|254780802|r 4 RSYSPQETDSIWQSAWYDSNIFKAENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAF 83 (869)
Q Consensus 4 ~~y~~~~iE~kwq~~W~~~~~fe~~~~~~~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~ 83 (869)
++|||++||+|||++|+++++|++.. .+++|||+++|||||||.|||||++|||++|+++|||||+|||||||||||||
T Consensus 3 ~~Y~~~~iE~kw~~~W~~~~~f~~~~-~~~~k~yvld~~PYpsG~lH~GH~~~~ti~Dii~Rykrm~G~~Vl~p~GwD~~ 81 (822)
T PRK00390 3 MRYNPKEIEKKWQKYWEENKTFKVTE-DSKPKYYVLDMFPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAF 81 (822)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCC-CCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 87886999999999998569824897-78998079377999898611325564789999999987189963898973668
Q ss_pred CHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCC
Q ss_conf 05899999980999999999999999999998191766469821477359999999999999889634122133214776
Q gi|254780802|r 84 GMPAENAAREHNVHPKMWTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVE 163 (869)
Q Consensus 84 GlPie~~~~e~~~~~~~~~~~~i~~~k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~pV~wcp~~ 163 (869)
|||+|++|++++++|++|++++|+.|++||+|||+|+||+|+|.|+||+|++++||+|.+|+++||||||.+||+|||.|
T Consensus 82 GLPaE~~aik~~~~p~~~t~~nI~~~k~q~k~lG~~~DW~r~~~T~dp~y~~~~qw~F~~l~ekGliyr~~~~V~Wcp~~ 161 (822)
T PRK00390 82 GLPAENAAIKTGTHPAEWTYENIANMKKQLKSLGFSYDWSREIATCDPEYYKWTQWLFLKLYEKGLAYRKESPVNWCPVD 161 (822)
T ss_pred CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCC
T ss_conf 86898999994998899999999999999998395430689877578779999999999999889979523242007976
Q ss_pred CCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 76778989843853345643223347523343034445443210022554322222100014557675453555677777
Q gi|254780802|r 164 QTVLANEQVINGRGWRSDAPVEQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIRWEIVSNTID 243 (869)
Q Consensus 164 ~t~la~~Ev~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~i~~~~~~~~~~~~~~~~~~ 243 (869)
+|+|||+||++|.||||+++|++++++|||||+|+|+++|+++++.|..||+.|+.||+||||+|.|+.++|++.+.
T Consensus 162 ~T~LAn~eV~~G~~~r~~~~V~~k~~~qw~~kit~Ya~~Ll~~l~~l~~wP~~vk~mQ~nWIG~s~g~~v~F~~~~~--- 238 (822)
T PRK00390 162 QTVLANEQVIDGRSWRSGAPVEKKELPQWFLKITDYADELLDDLDELDGWPEKVKTMQRNWIGRSEGAEVTFKVKGS--- 238 (822)
T ss_pred CCCCCHHHHCCCCCCCCCCEEEEEECCEEEEEHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCEEEEEEEEECCCC---
T ss_conf 87765044414764346870466304403552007588875021002466077766530433420007986331699---
Q ss_pred CCCEEEEEEECCCCCCCCCEEEEECCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEE
Q ss_conf 75136532001344432320033024432034541314589998865311112455543025532378610377777415
Q gi|254780802|r 244 QIEEILVYTTRPETIFGASFIAIAVDHSISEKLSCDNTDIKEFCDEEKQKGTSLSVLDKTEKKGIYTGIHVKHPLNPNVV 323 (869)
Q Consensus 244 ~~~~l~~~TtrPeTl~g~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~P~~~~~~ 323 (869)
...+.|||||||||||+|+++++|+|+++..+...+..+..++.+.+............++.|.++|.+++||++++ .
T Consensus 239 -~~~l~v~TTrP~Tl~G~t~~~v~p~h~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ek~G~~~G~~~~~P~~~~-~ 316 (822)
T PRK00390 239 -DEKLEVFTTRPDTLFGATYLVLAPEHPLAEKLAEQNPAVAAFIEECKNKSDLERTLATKEKTGVFTGLYAIHPLTGE-K 316 (822)
T ss_pred -CCEEEEEECCHHHHCCCCEEEEECCCHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHCEEECEECCCEEECCCCCC-E
T ss_conf -85599996883352286279993797899999844899999999987124366655315010100585897778896-5
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCHHHHH
Q ss_conf 77631123454533322211134672110122103544321016776555422211210123344583000135646654
Q gi|254780802|r 324 IPVYIANFVFMNYGTGAIFGCPFADQRDMDFAKKYGLPIIPIMKRSINHSQDIEEGKAFSGDGIMINSSFLDGMTNTEAL 403 (869)
Q Consensus 324 ipv~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~k~glpi~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 403 (869)
+||++++||++++|||+||+|||||++||+++++||||+++|++.... ..++.++|.++|+++++|+.+.+|+
T Consensus 317 iPI~~ad~V~~~~GTG~V~~~PaHd~~D~~~a~k~~Lpi~~Vi~~~~~-------~~~~~~~G~lins~~~~Gl~~~eA~ 389 (822)
T PRK00390 317 IPVWIANYVLMDYGTGAVMAVPAHDQRDFEFAKKYGLPIKQVIGGDVS-------EEAYTEDGVLINSGELDGLDSEEAK 389 (822)
T ss_pred EEEEEECCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCEEEECCCCC-------CCCCCCCEEEECCHHCCCCCHHHHH
T ss_conf 569962525245787726756878878999999829982476378876-------6545577148763421786468899
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCC-CCCCHH
Q ss_conf 8889999740467752022211100011122112322222342233346846347420001110010002245-421002
Q gi|254780802|r 404 QAVMSHLEKQNIKNSPIGKRKINFRLRDWCISRQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPG-NPLENH 482 (869)
Q Consensus 404 ~~i~~~l~~~~~~~~~~~~~~~~~~l~DW~ISRqr~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~-~~l~~~ 482 (869)
++++++|++.+. |++.++|+|||||||||||||+|||||||++|+.+.+++++|++++|++..+...| +||..+
T Consensus 390 ~~ii~~L~~~g~-----g~~~i~yrLRDW~iSRQRyWG~PIPi~~c~~~~~v~v~e~~Lpv~LPe~~~~~~~g~~PL~~~ 464 (822)
T PRK00390 390 EAIIAWLEEKGL-----GKRKVNYRLRDWGISRQRYWGEPIPIIHCEDCGVVPVPEDDLPVVLPEDVVPDGTGESPLAKH 464 (822)
T ss_pred HHHHHHHHHCCC-----CCCCCCEECCCCEEECCCCCCCCEEEEEECCCCEEEEEHHHCCCCCHHHEECCCCCCCHHHHC
T ss_conf 999999997799-----866341012663221120257840389957897787107875534600130068899946847
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHC
Q ss_conf 45642110136764435643234566643332233555654-41013566411433440145554433202345553201
Q gi|254780802|r 483 PTWKKIFCVKCGSEALRETDTMDTFVDSSWYYMRYMTPHAK-DPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHIL 561 (869)
Q Consensus 483 ~~~~~~~~~~~~~~~~r~~dvld~w~dS~~~~~~~~~~~~~-~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l 561 (869)
++|.+..|++||+.+.||+||||+||||||||++|+.|++. .+++++.+++|+|+|+|++|.+|+|+|++|+|||+++|
T Consensus 465 ~~w~~~~c~~~g~~~~RetDt~DtW~dSsWY~~ry~~p~~~~~~~d~~~~~yw~PvD~YigG~EHailHLlYsRF~~~~l 544 (822)
T PRK00390 465 PEWVNVTCPKCGKPARRETDTMDTFVGSSWYYLRYTDPHNDEAMFDKEAANYWLPVDQYIGGIEHAVLHLLYARFFHKVL 544 (822)
T ss_pred CCCEEEECCCCCCCCEECCCCCCEEECCCCEEEECCCCCCCCCCCCHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHH
T ss_conf 00175214777872145353102011354400001577644466797788602896140164456677888888999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCC
Q ss_conf 34787322320022223553232243323587001306202210256777544110489706404742100000012222
Q gi|254780802|r 562 KKIGYIEIDEPFKRLFTQGMVVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDP 641 (869)
Q Consensus 562 ~~~g~~~~~~pf~~l~~~G~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p 641 (869)
.++|++..++||++|++||||+++.+... .+++..|.++.. ++.....+|+||||||||||+|
T Consensus 545 ~dlg~~~~~ePF~~l~~qGmVl~~~~~~~---~~~~~~~~~v~~--------------~~~~~~~~g~KMSKSkGNvv~P 607 (822)
T PRK00390 545 RDLGLVSSDEPFKKLLTQGMVLGETYYDE---RGNWVSPADVEV--------------ERDEKRIGGIKMSKSKGNVVDP 607 (822)
T ss_pred HHCCCCCCCCCHHHHEECCEEECCCCCCC---CCCCCCHHHEEE--------------ECCCCCCCCCCCCCCCCCCCCH
T ss_conf 87167556777577504456842544445---677666011242--------------0455676776167657896898
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 10012346335666553013321111134321011455677889999976302466789756999999999999999998
Q gi|254780802|r 642 MKVIKSYGADTARLFVLSDSPPDRDIIWSNKGVDSTYQFIQQIWRLIYNAKDELQTSSTKKDISLISKSTKFLERIEENY 721 (869)
Q Consensus 642 ~~~i~~yGaD~lRl~~~~~~~~~~d~~~s~~~i~~~~rfl~kl~~l~~~~~~~~~~~~~~~D~~ils~~~~~i~~v~~~~ 721 (869)
.++|++||||++|||+++++|+++|++||++++++++|||+|+||++.... .......|+|+++++|+++++|+++|
T Consensus 608 ~~ii~~yGADalRl~~l~~ap~~~d~~ws~~~i~g~~rfl~rlw~~~~~~~---~~~~~~~d~~l~~~l~~~I~~vt~~~ 684 (822)
T PRK00390 608 DDIIDKYGADTARLFEMFAGPPEKDLEWSDSGVEGAYRFLQRVWRLVYDEG---AVAALEADKELRRALHKTIKKVTEDI 684 (822)
T ss_pred HHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC---CCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 999875480799999996088566612048789999999999999730444---55687231999999999999999999
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEECCCCCCC
Q ss_conf 81688999999999999999999862110002217999999999999997223438999999982899835517886659
Q gi|254780802|r 722 QNLSFNKAVANIHELVNVISKPLMEIAKKKSNADRISTIRYILEKLIIMMSPMIPHLAEECWQLLGNAGLVAQQKWPKLD 801 (869)
Q Consensus 722 e~~~f~~ai~~i~~f~n~ls~~y~~~~k~~~~~~~~~~l~~vl~~l~~lLaPi~PhiaEEiw~~Lg~~~~i~~~~WP~~d 801 (869)
|+|+||+|++.+|+|+|.+++.. ...+++++++.+++|||||+||+|||||+.||+++|||+++||++|
T Consensus 685 e~~~fn~ai~~l~~f~N~l~k~~-----------~~~~l~~~l~~l~rlLaPf~PhiaEElW~~Lg~~~sV~~~~WP~~d 753 (822)
T PRK00390 685 ERLRFNTAIAALMELVNALSKAP-----------DRAVLREALEILVRLLAPFAPHIAEELWQELGHEGSIANAPWPEVD 753 (822)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCC
T ss_conf 76677699999999999998725-----------1899999999999999878899999999977999856458999678
Q ss_pred HHHHHCCCCEEEEEECCEEEEEEECCCCCCHHHHHHHHHCCHHHHHHHCCCCCEEEEECCCCEEEEEC
Q ss_conf 67860377149899738166799808888999999999747888998469982599981890575779
Q gi|254780802|r 802 PILEVNTDIILPIQVNGKKRACITVSMNTDDDFIKKTVLELNVIKNILQGKSPKKIIIISKRIVNIVV 869 (869)
Q Consensus 802 ~~~~~~~~~~~~iqingk~r~~i~v~~~~~~~~i~~~~~~~~~i~~~l~~k~~~k~I~v~~klin~vi 869 (869)
++++.+++++++||||||+|++++++.+++++++++++++.+++++.++||+++|+||||+|||||||
T Consensus 754 e~~l~~~~~~~~vqiNGK~r~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~k~i~k~I~vp~kiiN~Vv 821 (822)
T PRK00390 754 EAALVEDEVTIVVQVNGKVRGKIEVAADASKEEVEALALADEKVQKFLEGKTIKKVIVVPGKLVNIVV 821 (822)
T ss_pred HHHHHHCCCEEEEEECCEEEEEEEECCCCCHHHHHHHHHCCHHHHHHHCCCCCEEEEEECCCEEEEEE
T ss_conf 78882167789999748087799808999999999998649779998589983399998997589996
No 3
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=0 Score=1509.76 Aligned_cols=801 Identities=46% Similarity=0.838 Sum_probs=742.8
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCCCC-CCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 765689998999999998598036767888-8389980778978987400477977899999977718985567688140
Q gi|254780802|r 4 RSYSPQETDSIWQSAWYDSNIFKAENGKNK-KKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDA 82 (869)
Q Consensus 4 ~~y~~~~iE~kwq~~W~~~~~fe~~~~~~~-~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~ 82 (869)
..|++.+||+|||++|+++++|+++.++++ +|||+++|||||||.|||||+||||+.||+|||+||+||||||||||||
T Consensus 3 ~~y~~~~IE~KWQ~~W~e~~~Fe~~~d~~~~~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGwda 82 (814)
T COG0495 3 SRYNPREIEEKWQKRWEEAKVFEADEDSDKPEKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWDA 82 (814)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCCC
T ss_conf 65235789999999998659710689888777559986787888873468541210899999999856972145675566
Q ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCCC
Q ss_conf 20589999998099999999999999999999819176646982147735999999999999988963412213321477
Q gi|254780802|r 83 FGMPAENAAREHNVHPKMWTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPV 162 (869)
Q Consensus 83 ~GlPie~~~~e~~~~~~~~~~~~i~~~k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~pV~wcp~ 162 (869)
+|||||++|++.+.+|+.|+++|++.||+||++||+|+||+|+|.|+||+|++|+||||.+|+++||+|++.++|+|||.
T Consensus 83 fGlPae~~A~~~~~~P~~wt~~ni~~~k~qlk~lG~siDW~Ref~T~Dp~Yyk~~QW~F~kL~ekGL~y~~~~~VnwcP~ 162 (814)
T COG0495 83 FGLPAENAAIKIGTDPAKWTYYNIAYMKKQLKSLGFSIDWRREFATCDPEYYKWIQWQFLKLYEKGLAYRKEAPVNWCPV 162 (814)
T ss_pred CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCEEECCCCCEECCC
T ss_conf 68639999998578969999999999999999808761235545647964779999999999977988852554310777
Q ss_pred CCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6767789898438533456432233475233430344454432100225-543222221000145576754535556777
Q gi|254780802|r 163 EQTVLANEQVINGRGWRSDAPVEQRSLPQWFFKISDLSQELLDSIETLS-EWPEKVKIMQKNWIGRSEGMEIRWEIVSNT 241 (869)
Q Consensus 163 ~~t~la~~Ev~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~l~-~~p~~v~~~~~~~i~~~~~~~~~~~~~~~~ 241 (869)
|+||||||||.+|.||||+.+|++++++|||||+++|+++|++++..+. .|||+|++||+||||++.|+.+.|.+.+..
T Consensus 163 d~tvlaneqv~~g~~~r~~~~V~~kel~qw~~kit~yae~ll~~l~~l~~~wPE~Vk~mq~nWIg~s~g~~v~f~~~~~~ 242 (814)
T COG0495 163 DGTVLANEQVIDGGCWRCGEPVEIKELTQWFFKITDYADELLDDLDKLATLWPETVKGMQRNWIGPSEGYEVAFVVDGEE 242 (814)
T ss_pred CCCCCCCCEEECCCCCCCCCCEEEEEEEEEEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCEEEEEECCCCC
T ss_conf 69761541241587655788526866689999913429999866665424795669989872707888758998517764
Q ss_pred CCCCCEEEEEEECCCCCCCCCEEEEECCCCCCHHHHHCC--HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCC
Q ss_conf 777513653200134443232003302443203454131--458999886531111245554302553237861037777
Q gi|254780802|r 242 IDQIEEILVYTTRPETIFGASFIAIAVDHSISEKLSCDN--TDIKEFCDEEKQKGTSLSVLDKTEKKGIYTGIHVKHPLN 319 (869)
Q Consensus 242 ~~~~~~l~~~TtrPeTl~g~~~i~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~P~~ 319 (869)
. ...+.++||||+|++|++.++++|+|+++..++..+ ..+.+|++++...+...++....++.+.++|.+++||++
T Consensus 243 ~--~~~~~vfttr~dt~~gvt~~~~a~~h~lv~~~~~~~~~~~~a~fv~~~~~~~~~~~~~~~~~k~gv~~g~~a~~p~~ 320 (814)
T COG0495 243 E--IVSIEVFTTRPDTLFGVTYVVLAPEHPLVGKLVTNPQTPLVAEFVDECKGTGVVESVPAHAEKDGVFLGGYAINPVN 320 (814)
T ss_pred C--CCCEEEEECCCCCCCCEEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCEECCCCCCCCCC
T ss_conf 4--10024466357311674899970786678987418651669999988617871563045687763113650247777
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCH
Q ss_conf 74157763112345453332221113467211012210354432101677655542221121012334458300013564
Q gi|254780802|r 320 PNVVIPVYIANFVFMNYGTGAIFGCPFADQRDMDFAKKYGLPIIPIMKRSINHSQDIEEGKAFSGDGIMINSSFLDGMTN 399 (869)
Q Consensus 320 ~~~~ipv~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~k~glpi~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 399 (869)
+ ..+||+.++||.+..|||.||.+|+|+++|++++++|+||+.+++...+. .+..++.++++++||+.++|+..
T Consensus 321 ~-e~iPi~~a~~vl~~ygtgavm~vpahd~rd~efA~~y~l~i~~vi~~~~~-----~~~~~~~~~g~linS~~~~gl~~ 394 (814)
T COG0495 321 G-EKIPVWIANYVLMEYGTGAVMGVPAHDERDLEFATKYKLPIKKVIMPEGT-----VGKKVYEGEGVLINSGGLDGLDY 394 (814)
T ss_pred C-CCCCEEEECCCCCCCCCCCEECCCCCCCHHHHHHHHCCCCEEEEEECCCC-----CCCEEECCCCEEECCCCCCCCCC
T ss_conf 8-86778996743145556635458888702068998528861799824887-----66400114745762543367640
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCC
Q ss_conf 66548889999740467752022211100011122112322222342233346846347420001110010002245421
Q gi|254780802|r 400 TEALQAVMSHLEKQNIKNSPIGKRKINFRLRDWCISRQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPL 479 (869)
Q Consensus 400 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~DW~ISRqr~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l 479 (869)
+++...+...+++.+ .+++.++|++|||++|||||||+|||+.+|+.|+.++++.++|++.+|++..+...|+||
T Consensus 395 e~a~~~~~~~l~~~~-----~~q~~v~Y~lrdW~~srqRywg~pipii~~e~~~~~~~~~d~Lpv~lp~~~~~~gt~~pL 469 (814)
T COG0495 395 EEAKVKIRCGLVKRG-----LGQWFVNYRLRDWLKSRQRYWGEPIPIIHCEDCGVVPVPEDWLPVKLPERVRGLGTGSPL 469 (814)
T ss_pred HHHHHHHHHHHHHHC-----CCCEEEECCCCHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHCCCCCCCCCCCCCCCCCC
T ss_conf 567999998688723-----782588514515778999970899645474237855473676674366411467988999
Q ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 00245642110136764435643234566643332233555654--4101356641143344014555443320234555
Q gi|254780802|r 480 ENHPTWKKIFCVKCGSEALRETDTMDTFVDSSWYYMRYMTPHAK--DPINKELVRQWFPVDQYIGGIEHAVLHLLYARFF 557 (869)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~r~~dvld~w~dS~~~~~~~~~~~~~--~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~ 557 (869)
..++.|....|+. ++.+|++|+||+|++|+||+++|.++... .+.+++.+++|+|+|+|++|.||+++|++|+|||
T Consensus 470 ~~~~~W~~~s~~~--s~~~ret~Tm~~~~~sswy~~r~~d~~~~~~~~~~~e~~~yW~PVD~yigG~ehavlHLly~rF~ 547 (814)
T COG0495 470 PWDEEWVIESLPD--STAYRETDTMDTFIDSSWYYLRFFDPIFLGELPFDREEFNYWYPVDLYIGGIEHAVLHLLYFRFF 547 (814)
T ss_pred CCCCCEEEEECCC--CCEEEEHHHHHHHCCCCCCCHHHCCHHCCCCCHHCHHHHHCCCCHHEEECCHHHHHHHHHHHHHH
T ss_conf 8883617996699--85353232465760432101866581007543225788742067201226366777889999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCC
Q ss_conf 32013478732232002222355323224332358700130620221025677754411048970640474210000001
Q gi|254780802|r 558 AHILKKIGYIEIDEPFKRLFTQGMVVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKN 637 (869)
Q Consensus 558 ~~~l~~~g~~~~~~pf~~l~~~G~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGN 637 (869)
|.+|.+.|.++.+|||+++++||||+.+ +|+||||||||
T Consensus 548 hkal~d~g~~p~~epf~~L~~qGmVl~~-----------------------------------------~g~KMSKSKgN 586 (814)
T COG0495 548 HKALFDEGLVPKDEPFKKLITQGMVLGE-----------------------------------------EGEKMSKSKGN 586 (814)
T ss_pred HHHHCCCCCCCCCCHHHHHHCCCEEEEC-----------------------------------------CCCCCCCCCCC
T ss_conf 9883475778776504444114268742-----------------------------------------77704544578
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC----HHHHHHHHHHHHH
Q ss_conf 222210012346335666553013321111134321011455677889999976302466789----7569999999999
Q gi|254780802|r 638 VIDPMKVIKSYGADTARLFVLSDSPPDRDIIWSNKGVDSTYQFIQQIWRLIYNAKDELQTSST----KKDISLISKSTKF 713 (869)
Q Consensus 638 vi~p~~~i~~yGaD~lRl~~~~~~~~~~d~~~s~~~i~~~~rfl~kl~~l~~~~~~~~~~~~~----~~D~~ils~~~~~ 713 (869)
+|+|+++|++||||++|+|+|++||+++|++|+++++++++|||+|+|+++....+......+ ..|+|+ +|++
T Consensus 587 ~v~p~~~i~~yGADt~Rl~~m~~ap~~~d~~W~e~gv~g~~rfL~r~~~l~~~~~~~~~~~~~~~~~~~~~~~---~h~~ 663 (814)
T COG0495 587 VVDPEEAVEKYGADTVRLYIMFAAPPEQDLEWSESGVEGARRFLQRVWNLVKEHLEKLVEELTKEQGKEDRWL---LHRT 663 (814)
T ss_pred CCCHHHHHHHHCCHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH---HHHH
T ss_conf 8898999999584098999986087753788774564899999999999999864023333553056889999---9999
Q ss_pred HHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCE
Q ss_conf 9999999881-688999999999999999999862110002217999999999999997223438999999982899835
Q gi|254780802|r 714 LERIEENYQN-LSFNKAVANIHELVNVISKPLMEIAKKKSNADRISTIRYILEKLIIMMSPMIPHLAEECWQLLGNAGLV 792 (869)
Q Consensus 714 i~~v~~~~e~-~~f~~ai~~i~~f~n~ls~~y~~~~k~~~~~~~~~~l~~vl~~l~~lLaPi~PhiaEEiw~~Lg~~~~i 792 (869)
++.|++++++ +.||+|++.+|+|+|.|.++...... ...+|+++++.+++||+||+||+|||||+.||+.++|
T Consensus 664 ~~~v~~~~e~~~~~nt~i~~~m~l~N~l~~~~~~~~~------~~~~l~~~l~~~v~lLaP~aPH~aEElW~~lg~~~~v 737 (814)
T COG0495 664 IKKVTEDFEARQTFNTAIAALMELLNALRKYLRRTEG------DRKVLREALETWVRLLAPFAPHIAEELWEELGNEGFV 737 (814)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCE
T ss_conf 9999999999988999999999999999998750232------0789999999999996666647799999996699816
Q ss_pred EECCCCCCCHHHHHCCCCEEEEEECCEEEEEEECCCCCCHHHHHHHHHCCHHHHHHHCCCCCEEEEECCCCEEEEEC
Q ss_conf 51788665967860377149899738166799808888999999999747888998469982599981890575779
Q gi|254780802|r 793 AQQKWPKLDPILEVNTDIILPIQVNGKKRACITVSMNTDDDFIKKTVLELNVIKNILQGKSPKKIIIISKRIVNIVV 869 (869)
Q Consensus 793 ~~~~WP~~d~~~~~~~~~~~~iqingk~r~~i~v~~~~~~~~i~~~~~~~~~i~~~l~~k~~~k~I~v~~klin~vi 869 (869)
+.++||++|++.+..+++++++|+|||+|.++.++.++++++++.++++.+.+++++++++++|+|+||+|++|+|+
T Consensus 738 ~~~~wP~~de~~l~~~~~~~~vqvngk~r~~~~~~~~a~~~~~~~~~~~~~~v~~~l~~~~~~k~i~VP~k~vn~v~ 814 (814)
T COG0495 738 SNAPWPEPDEEALVEDEVEIVVQVNGKVRAREVVAADADEEKVKEIALADEEVQKFLQGKTIKKVIAVPGKPVNIVE 814 (814)
T ss_pred EECCCCCCCHHHCCCCEEEEEEEECCEEEEEEEECCCCCHHHHHHHHHCCHHHHHHHCCCCCCEEEECCCCCEEEEC
T ss_conf 41789987734416550599999802897899974779878999998623889998767885148964996148869
No 4
>TIGR00422 valS valyl-tRNA synthetase; InterPro: IPR002303 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=1330.43 Aligned_cols=658 Identities=28% Similarity=0.474 Sum_probs=558.3
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC--CC--EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 8765689998999999998598036767888--83--8998077897898740047797789999997771898556768
Q gi|254780802|r 3 TRSYSPQETDSIWQSAWYDSNIFKAENGKNK--KK--YFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPM 78 (869)
Q Consensus 3 ~~~y~~~~iE~kwq~~W~~~~~fe~~~~~~~--~k--f~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~ 78 (869)
.+.|||+++|.+||+.|+++++|+++.++++ ++ |.|..||||+||.|||||||+.||.|+++|||||+||+|||+|
T Consensus 2 ~~~Y~P~~vE~~~Y~~W~~~~~F~~~~~~~~~~~~~~f~i~~PPPNvTG~LH~GHAl~~~l~D~l~RykRM~G~~vLw~~ 81 (970)
T TIGR00422 2 PKDYDPKEVEKKLYDKWEKSGFFKPDGNSNKKVEPKRFCIVIPPPNVTGSLHIGHALNWSLQDILARYKRMKGYNVLWLP 81 (970)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 88887767779999998727850226864465377751571782585555116689999999999985421787125788
Q ss_pred CCCCCCHHHHHHHHH----H---CC------------CHHHHHHHHHHHHHHHHHHCCCEEECCCCEECCCHHHHHHHHH
Q ss_conf 814020589999998----0---99------------9999999999999999998191766469821477359999999
Q gi|254780802|r 79 GWDAFGMPAENAARE----H---NV------------HPKMWTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQL 139 (869)
Q Consensus 79 G~d~~GlPie~~~~e----~---~~------------~~~~~~~~~i~~~k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w 139 (869)
||||||+|+|.++|+ + |. .|.+|++++++.|++|++|||+|+||+|+++||||+|++.|+-
T Consensus 82 G~DHAGIATQ~~vE~~~~~~~ikgK~k~D~gRe~F~~~~~ewk~e~~~~I~~Q~~rLG~S~DWsrE~FTmd~~l~~~V~~ 161 (970)
T TIGR00422 82 GTDHAGIATQVKVEKKLKAEEIKGKTKHDLGREEFVEKIWEWKEESGGTIKNQIKRLGVSLDWSRERFTMDEGLSKAVKE 161 (970)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHHHHHHHH
T ss_conf 86657632468999998762257887787886899999999998877999999998088502350045448888889999
Q ss_pred HHHHHHHCCCEEECCEEEECCCCCCCCCCHHHH---HCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 999999889634122133214776767789898---43853345643223347523343034445443210022554322
Q gi|254780802|r 140 LFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQV---INGRGWRSDAPVEQRSLPQWFFKISDLSQELLDSIETLSEWPEK 216 (869)
Q Consensus 140 ~f~~L~~kGliyrg~~pV~wcp~~~t~la~~Ev---~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~l~~~p~~ 216 (869)
.|.+||++||||||.|+|||||+|+|||||.|| ++.+. .+...||
T Consensus 162 ~Fv~LY~~GLIYRg~~lVNWdpk~~TAiSd~EVenkeyker---------~~~~L~y----------------------- 209 (970)
T TIGR00422 162 AFVRLYEKGLIYRGEYLVNWDPKLNTAISDIEVENKEYKER---------VKGKLYY----------------------- 209 (970)
T ss_pred HHHHHHHCCCEEECCCCEEEECCCCCHHHHHHHHCCCCCCC---------CCCCCCE-----------------------
T ss_conf 99988554861543611372054463102333321113122---------2665451-----------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCEEEEEEECCCCCCCCCEEEEECCCCCC-HHHHHCCHHHHHHHHHHHHH
Q ss_conf 222100014557675453555677--777751365320013444323200330244320-34541314589998865311
Q gi|254780802|r 217 VKIMQKNWIGRSEGMEIRWEIVSN--TIDQIEEILVYTTRPETIFGASFIAIAVDHSIS-EKLSCDNTDIKEFCDEEKQK 293 (869)
Q Consensus 217 v~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~l~~~TtrPeTl~g~~~i~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 293 (869)
++|++.++ ++++..+|+|||||||||||+|+|+|||+.+.+ ..+
T Consensus 210 ----------------~~Ypla~~~~~~~Gkd~l~vATTRPETm~gDtAvaVhP~DeRYYk~L----------------- 256 (970)
T TIGR00422 210 ----------------IRYPLANGSKTADGKDYLVVATTRPETMFGDTAVAVHPEDERYYKHL----------------- 256 (970)
T ss_pred ----------------EEEEECCCCCCCCCCCEEEEEECCCHHHHHCEEEEECCCCCHHHHHH-----------------
T ss_conf ----------------56543488754235520799726722564282887678970457855-----------------
Q ss_pred HHHHHHHHHHCCCCCCCCCEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCC-CCCCCCCCCCCC
Q ss_conf 1124555430255323786103777774157763112345453332221113467211012210354-432101677655
Q gi|254780802|r 294 GTSLSVLDKTEKKGIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIFGCPFADQRDMDFAKKYGL-PIIPIMKRSINH 372 (869)
Q Consensus 294 ~~~~~~~~~~~~~~~~~G~~~~~P~~~~~~ipv~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~k~gl-pi~~v~~~~~~~ 372 (869)
+|+.+.+||+ ++.|||+.+++||+++|||||+++||||++||+++++|+| |++.+++..|..
T Consensus 257 ----------------~GK~v~~PL~-~r~ipiiaDe~VD~EFGTG~VKvTPAHD~ND~~~g~RH~LLe~i~~l~~dG~L 319 (970)
T TIGR00422 257 ----------------IGKKVILPLT-GRKIPIIADEYVDMEFGTGAVKVTPAHDFNDYEVGKRHNLLEFINILDEDGLL 319 (970)
T ss_pred ----------------CCCEEEECCC-CCEEEEECCCCCCCCCCCCEEEEECCCCCCCHHHCCEECCCCHHHHCCCCCCC
T ss_conf ----------------4988972456-76843761775462417512776087497760013412114143331799750
Q ss_pred CCCCC---CHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHCCC-----------CCCHHHH---------------
Q ss_conf 54222---112101233445830001356466548889999740467-----------7520222---------------
Q gi|254780802|r 373 SQDIE---EGKAFSGDGIMINSSFLDGMTNTEALQAVMSHLEKQNIK-----------NSPIGKR--------------- 423 (869)
Q Consensus 373 ~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~l~~~~~~-----------~~~~~~~--------------- 423 (869)
++... -|.. .+. - -++.|.||.+.+||++|+++|++.+.. .+.+++.
T Consensus 320 ne~a~~~~tG~~-~~Y--~-iP~~y~GL~~~eAR~kiv~~L~~~glL~k~~p~~~~VG~c~Rsg~vvEP~ls~QWFV~~~ 395 (970)
T TIGR00422 320 NENAEVIDTGKE-DVY--A-IPGEYQGLERFEARKKIVEDLKEEGLLVKIEPHTHNVGHCERSGTVVEPLLSKQWFVKVE 395 (970)
T ss_pred CCEECEEECCCC-CCC--C-CCHHCCCCCHHHHHHHHHHHHHHCCCCCCCCEECCCCCEECCCCCEEECCCCCCCEECHH
T ss_conf 110011007772-331--0-652205888899999999999866880011100034562147893430426998621717
Q ss_pred -----------H---HH------------H--HCC-CCCCCCCCCCCCCCCCCC--------CCCCCCEECCCCCCCHHH
Q ss_conf -----------1---11------------0--001-112211232222234223--------334684634742000111
Q gi|254780802|r 424 -----------K---IN------------F--RLR-DWCISRQRSWGCPIPVIH--------CQKCGIVELPKEDLPVQL 466 (869)
Q Consensus 424 -----------~---~~------------~--~l~-DW~ISRqr~WG~piPv~~--------~~~~~~~~~~~~~l~v~~ 466 (869)
+ +. | .|+ ||||||||+||||||||| |..||.+.|..++.....
T Consensus 396 ~La~~a~~~~~~~g~~~fvP~~~~~~y~~W~~~~~WDWCISRQL~WGH~IPvWY~~~E~~~~~~~~G~~~V~~~~~~~~~ 475 (970)
T TIGR00422 396 KLADKALEAAEEDGEIKFVPKRFEKRYLNWLRNIRWDWCISRQLIWGHRIPVWYVEIEGEEDHKETGEVYVAKEEALPDS 475 (970)
T ss_pred HHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCEEEEECCCCCCCCCCCEEEECCCCCCCCC
T ss_conf 77899999985458833602167889999996388881330102026457667751357776764114774787764101
Q ss_pred HCCCCCCCCCCCCCHHHHHHHHHHCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCHHHHHHHCCCHHHHCCC
Q ss_conf 001000224542100245642110136764--4356432345666433322335556-5441013566411433440145
Q gi|254780802|r 467 PEDLDFTLPGNPLENHPTWKKIFCVKCGSE--ALRETDTMDTFVDSSWYYMRYMTPH-AKDPINKELVRQWFPVDQYIGG 543 (869)
Q Consensus 467 ~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~r~~dvld~w~dS~~~~~~~~~~~-~~~~~~~e~~~~~~P~D~~i~g 543 (869)
+. ..| -+..|++||.. +.+++||||||||||++++..++|. .+...+...++.+||++++++|
T Consensus 476 ~~-----~~g---------p~~~c~~CG~~f~l~qd~DVLDTWFSS~LWPfs~lGWpqekG~~~~~D~~~fyPt~~L~TG 541 (970)
T TIGR00422 476 KT-----NTG---------PKEVCDKCGSVFELEQDEDVLDTWFSSSLWPFSTLGWPQEKGDETEKDLKKFYPTDLLVTG 541 (970)
T ss_pred HH-----CCC---------CCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCH
T ss_conf 10-----167---------6876634587423434877545323234458874688644567766889733887656530
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHCCCCCCCCCCCEECCCC
Q ss_conf 55443320234555320134787322--3200222235532322433235870013062022102567775441104897
Q gi|254780802|r 544 IEHAVLHLLYARFFAHILKKIGYIEI--DEPFKRLFTQGMVVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNS 621 (869)
Q Consensus 544 ~d~~~~~~~~~r~~~~~l~~~g~~~~--~~pf~~l~~~G~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 621 (869)
.| ||+||.+||.+.++..+|.-.+ ..||+++++||||.|+
T Consensus 542 ~D--IiFFWV~RMi~~~~~~tgDEnGkP~~PFk~v~ihGLVRDe------------------------------------ 583 (970)
T TIGR00422 542 YD--IIFFWVARMILRSLALTGDENGKPQVPFKDVYIHGLVRDE------------------------------------ 583 (970)
T ss_pred HH--HHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCEEECC------------------------------------
T ss_conf 36--8899999998621554013586988782025865445558------------------------------------
Q ss_pred EEEECCCCCCHHHCCCCCCCCCCCC-------------------------------------CCCHHHHHHHHHHCCC-C
Q ss_conf 0640474210000001222210012-------------------------------------3463356665530133-2
Q gi|254780802|r 622 KVVIGPLEKMSKSKKNVIDPMKVIK-------------------------------------SYGADTARLFVLSDSP-P 663 (869)
Q Consensus 622 ~~~~~~g~KMSKSkGNvi~p~~~i~-------------------------------------~yGaD~lRl~~~~~~~-~ 663 (869)
+|+|||||+||||+|.|+|+ +||||||||||++.+. +
T Consensus 584 -----qG~KMSKSlGNvIdP~d~I~GI~L~dL~~K~~~~~l~P~~~eK~~~~~~~~fpnGI~~YGaDALR~~La~~~~G~ 658 (970)
T TIGR00422 584 -----QGRKMSKSLGNVIDPLDVIEGISLDDLLEKRTGNMLQPQLAEKIKKGTKKSFPNGIPKYGADALRFTLASLVTGP 658 (970)
T ss_pred -----CCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHCCHHHHHHHHHHCCCCC
T ss_conf -----885122205683476986068870789999745777835899987643210323200206038999998358678
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC-------------CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf 111113432101145567788999997630246-------------6789756999999999999999998816889999
Q gi|254780802|r 664 DRDIIWSNKGVDSTYQFIQQIWRLIYNAKDELQ-------------TSSTKKDISLISKSTKFLERIEENYQNLSFNKAV 730 (869)
Q Consensus 664 ~~d~~~s~~~i~~~~rfl~kl~~l~~~~~~~~~-------------~~~~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai 730 (869)
|+|++|+++.+++++||+||+||..+++.-... ...+..|+||||+|+++|+.+++++++|+|+.|.
T Consensus 659 G~Di~f~~~~v~~~~nF~NKlWNA~rF~l~~~~~~~~~~~~~~~~~~~~~l~drWILs~L~~~i~~v~~~ld~Y~F~~a~ 738 (970)
T TIGR00422 659 GDDINFDWKRVESARNFANKLWNASRFVLMNLSDDTQDELELSGGEEKLSLADRWILSKLNRTIKEVREALDKYRFNEAA 738 (970)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 98642118988767677678899999999600356676113577632013546999999999999999988403677887
Q ss_pred HHHHHHH-HHHHHHHHHHCCCCCCCCH--------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC--CCEEECCCCC
Q ss_conf 9999999-9999999862110002217--------999999999999997223438999999982899--8355178866
Q gi|254780802|r 731 ANIHELV-NVISKPLMEIAKKKSNADR--------ISTIRYILEKLIIMMSPMIPHLAEECWQLLGNA--GLVAQQKWPK 799 (869)
Q Consensus 731 ~~i~~f~-n~ls~~y~~~~k~~~~~~~--------~~~l~~vl~~l~~lLaPi~PhiaEEiw~~Lg~~--~~i~~~~WP~ 799 (869)
+.||+|+ ++||+||+|.+|.+.+.+. ..+|..+|+.+++||||||||+||||||.+.+. .||++++||+
T Consensus 739 ~~ly~F~W~dFCD~YIE~~K~~~~~~~~~~~k~~A~~~L~~vLd~~l~LLhPf~PF~tE~iwq~~~~~~~~si~~~~yP~ 818 (970)
T TIGR00422 739 KALYEFIWNDFCDWYIELVKYRLYNGNDEAEKKAARDTLAYVLDKALRLLHPFMPFITEEIWQHLKEGEADSIMLQSYPE 818 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 57652101345123544214314789738999999999999999999985245522578999884361010422135765
Q ss_pred CCHH
Q ss_conf 5967
Q gi|254780802|r 800 LDPI 803 (869)
Q Consensus 800 ~d~~ 803 (869)
++++
T Consensus 819 ~~~~ 822 (970)
T TIGR00422 819 VDAE 822 (970)
T ss_pred HHHH
T ss_conf 2334
No 5
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=0 Score=1312.66 Aligned_cols=693 Identities=24% Similarity=0.404 Sum_probs=546.1
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCC--CCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 8765689998999999998598036--76788883899807789789874004779778999999777189855676881
Q gi|254780802|r 3 TRSYSPQETDSIWQSAWYDSNIFKA--ENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGW 80 (869)
Q Consensus 3 ~~~y~~~~iE~kwq~~W~~~~~fe~--~~~~~~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~ 80 (869)
..+|||++||++||++|+++++|++ +.++++|+|+|++|||||||.|||||++|+|++|+++||+||+||||+|||||
T Consensus 2 ~~~~~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~~~dgPPy~nG~lHiGH~~~~tikDii~Ry~rm~G~~V~~~~Gw 81 (1042)
T PRK06039 2 PSKPDFPAVEEEVLKFWKENDIFEKSIENREGGPEFVFYDGPPFANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGW 81 (1042)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 89999889889999999868992463000699997899678998788721436687899999999987389966898974
Q ss_pred CCCCHHHHHHHHHH-----------------CCCHHHHHHHHHHHHHHHHHHCCCEEECCCCEECCCHHHHHHHHHHHHH
Q ss_conf 40205899999980-----------------9999999999999999999981917664698214773599999999999
Q gi|254780802|r 81 DAFGMPAENAAREH-----------------NVHPKMWTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLD 143 (869)
Q Consensus 81 d~~GlPie~~~~e~-----------------~~~~~~~~~~~i~~~k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~ 143 (869)
||||||||.++++. ...|++++.++++.|++||+|||+|+||+|+|.||||.|++++||+|.+
T Consensus 82 D~hGLPiE~~vek~lgi~~k~~i~~~gi~~F~~~cr~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~e~v~~~F~~ 161 (1042)
T PRK06039 82 DTHGLPVELEVEKELGISGKKDIEKYGIEKFNEECRESVLRYTDEWEEYTERLGRWVDFDNPYKTMDNSYMESVWWALKQ 161 (1042)
T ss_pred CCCCHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHHHH
T ss_conf 86778999999998476676426552899999999999999999999999981820526898276898899999999999
Q ss_pred HHHCCCEEECCEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 99889634122133214776767789898438533456432233475233430344454432100225543222221000
Q gi|254780802|r 144 FMKHNVIVRKTAQVNWDPVEQTVLANEQVINGRGWRSDAPVEQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKN 223 (869)
Q Consensus 144 L~~kGliyrg~~pV~wcp~~~t~la~~Ev~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~ 223 (869)
|+++||||||.+||+|||+|+||||||||.+|+..+ ..+.
T Consensus 162 L~ekGliYrg~~~V~wcp~~~T~Lad~Ev~~~Y~~~--------~~~s-------------------------------- 201 (1042)
T PRK06039 162 LYDKGLLYEGYRVVPYCPRCETPLSNHEVRQGYKEV--------KDPS-------------------------------- 201 (1042)
T ss_pred HHHCCCEEECCCEECCCCCCCCCCHHHHHHCCCEEE--------ECCE--------------------------------
T ss_conf 998799896271325489889881186730574441--------4464--------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCHHHHHCCHH---H-HHHHHHHHH-HHHHHH
Q ss_conf 14557675453555677777751365320013444323200330244320345413145---8-999886531-111245
Q gi|254780802|r 224 WIGRSEGMEIRWEIVSNTIDQIEEILVYTTRPETIFGASFIAIAVDHSISEKLSCDNTD---I-KEFCDEEKQ-KGTSLS 298 (869)
Q Consensus 224 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~TtrPeTl~g~~~i~v~~~~~~~~~~~~~~~~---~-~~~~~~~~~-~~~~~~ 298 (869)
..++|++.+ ..+.++++||||||||+|+++++|+|+.+|+......+.+ + ...+..... ......
T Consensus 202 -------~~vkF~l~~---~~~~~l~iwTTrPwTl~~n~avaV~Pd~~Y~~v~~~~~~e~~i~a~~~~~~~~~~~~~~~~ 271 (1042)
T PRK06039 202 -------VYVKFKLKG---EENEYLLAWTTTPWTLPSNLALAVGPDIDYVKVRDKGGGEVYILAEALLEKVLKKEGGEEY 271 (1042)
T ss_pred -------EEEEEEEEC---CCCCEEEEECCCCCCCCCCEEEEECCCCCEEEEEECCCCEEEEEEHHHHHHHHHHCCCCCE
T ss_conf -------999999752---7984799865887511113599986876369998448975999808889999855167540
Q ss_pred HHHHHCCCCCCCCCEECCCCC------CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCC
Q ss_conf 554302553237861037777------74157763112345453332221113467211012210354432101677655
Q gi|254780802|r 299 VLDKTEKKGIYTGIHVKHPLN------PNVVIPVYIANFVFMNYGTGAIFGCPFADQRDMDFAKKYGLPIIPIMKRSINH 372 (869)
Q Consensus 299 ~~~~~~~~~~~~G~~~~~P~~------~~~~ipv~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~k~glpi~~v~~~~~~~ 372 (869)
.+....++.+|+|+.|.||+. ....+||++++||+++.|||+||+|||||++||+++++||||++.+++..+.+
T Consensus 272 ~v~~~~~G~~L~G~~y~~p~~~~~~~~~~~~~~Vi~~d~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~vd~~G~~ 351 (1042)
T PRK06039 272 EVLETFKGEELEGLRYEPPFPYFVPEDEENAFRVVAADFVTTEDGTGIVHIAPAFGEDDFEVGKKYGLPVVCPVDDNGRF 351 (1042)
T ss_pred EEEEEEECHHHCCCEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 78877512430788877886432366778742799547205788974289678898899999998399866631775533
Q ss_pred CCCCCC-------------------HHHCCCCCCCCCCHHHCCCC---------------HHHHHHHHHHHHHHHCCCCC
Q ss_conf 542221-------------------12101233445830001356---------------46654888999974046775
Q gi|254780802|r 373 SQDIEE-------------------GKAFSGDGIMINSSFLDGMT---------------NTEALQAVMSHLEKQNIKNS 418 (869)
Q Consensus 373 ~~~~~~-------------------~~~~~~~~~~~~~~~~~g~~---------------~~~~~~~i~~~l~~~~~~~~ 418 (869)
+..+.+ .+.+...+.+.|+.+++|++ +++.++.+++...+.++.+.
T Consensus 352 ~~~~~~~~G~~v~da~~~Ii~~L~~~g~l~~~~~~~Hsyp~cwR~~~pli~~~~~QWFi~~~~~k~~~l~~~~~i~w~P~ 431 (1042)
T PRK06039 352 TEEVPDYAGKFVKDADKEIIRDLKERGLLFKAETYEHSYPHCWRCDTPLIYRAVESWFIRVTKIKDRMLELNQKINWYPE 431 (1042)
T ss_pred CCCCCCCCCCEEECCHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCEEECC
T ss_conf 46443517936530209999999866752246633557874257798148633262776557679999998602147345
Q ss_pred CHHHHHHHH---HCCCCCCCCCCCCCCCCCCCCCCCCCCEECCC--CCCCHHHHCCCCCCCCCCCCCHHHHH---HHHHH
Q ss_conf 202221110---00111221123222223422333468463474--20001110010002245421002456---42110
Q gi|254780802|r 419 PIGKRKINF---RLRDWCISRQRSWGCPIPVIHCQKCGIVELPK--EDLPVQLPEDLDFTLPGNPLENHPTW---KKIFC 490 (869)
Q Consensus 419 ~~~~~~~~~---~l~DW~ISRqr~WG~piPv~~~~~~~~~~~~~--~~l~v~~~~d~~~~~~~~~l~~~~~~---~~~~~ 490 (869)
..+..+... .++|||||||||||+|||||+|++|+.+.+.. +++..... ...+..-+.+| ....|
T Consensus 432 ~~~~~rf~~wl~n~~DW~ISRQR~WG~PIPvw~~~~~~~~~v~~s~~el~~~~~-------~~~~~dlhrp~iD~v~~~~ 504 (1042)
T PRK06039 432 HIKDGRFGKWLENARDWAISRNRYWGTPLPIWRCEDCGRIDVIGSIEELEEDFG-------VPKPIDLHRPYIDEVTLPC 504 (1042)
T ss_pred CCCCCHHHHHHHHCCCHHHHCCCCCCCCCEEEEECCCCCEEECCCHHHHHHHCC-------CCCCCHHCCCCCCCEEECC
T ss_conf 232006999986363311000234577540699679996670286999987608-------8883010245455056558
Q ss_pred CCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf 136764435643234566643-3322335556544101356641143344014555443320234555320134787322
Q gi|254780802|r 491 VKCGSEALRETDTMDTFVDSS-WYYMRYMTPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIGYIEI 569 (869)
Q Consensus 491 ~~~~~~~~r~~dvld~w~dS~-~~~~~~~~~~~~~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~g~~~~ 569 (869)
+.|+..+.|++||||+||||| |+++....|.. +++.+++|||+|++++|.||+ |+|+++++.++++..
T Consensus 505 ~~~~~~~~r~~DvlD~WfdSg~~p~a~~~~p~~----~~~~f~~~~PaD~i~eg~Dq~-------RgWF~sl~~~s~~~~ 573 (1042)
T PRK06039 505 PDCGTGMRRVPDVLDVWFDSGSMPYAQLHYPFE----NKELFEEHFPADFIVEGIDQT-------RGWFYTLLALSTALF 573 (1042)
T ss_pred CCCCCCCCCCCCCEEEEEECCCCCEEEECCCCC----CHHHHHCCCCCEEEEECCCHH-------EEEEEEEEEEEEEEC
T ss_conf 998621030564212376358744069778643----666662158644445232221-------014360003212234
Q ss_pred -CCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCCCCC
Q ss_conf -3200222235532322433235870013062022102567775441104897064047421000000122221001234
Q gi|254780802|r 570 -DEPFKRLFTQGMVVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSY 648 (869)
Q Consensus 570 -~~pf~~l~~~G~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~~y 648 (869)
..||+++++||+|+++ +|+|||||+||+|+|.++|++|
T Consensus 574 ~~~Pfk~v~~~G~Vld~-----------------------------------------~G~KMSKS~GNvidP~~vi~~y 612 (1042)
T PRK06039 574 DRPPYKNVIVHGHVLDE-----------------------------------------DGQKMSKSLGNYVDPFEVFDKY 612 (1042)
T ss_pred CCCCCCEEEEEEEEECC-----------------------------------------CCEECCCCCCCCCCHHHHHHHC
T ss_conf 84200258995038736-----------------------------------------8648033678868979998860
Q ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCHH-HHHHHHHHHHHHHHH-----HHCCCCCC--------CCHHHHHHHHHHHHHH
Q ss_conf 633566655301332111113432101-145567788999997-----63024667--------8975699999999999
Q gi|254780802|r 649 GADTARLFVLSDSPPDRDIIWSNKGVD-STYQFIQQIWRLIYN-----AKDELQTS--------STKKDISLISKSTKFL 714 (869)
Q Consensus 649 GaD~lRl~~~~~~~~~~d~~~s~~~i~-~~~rfl~kl~~l~~~-----~~~~~~~~--------~~~~D~~ils~~~~~i 714 (869)
|||+||||+++.+.+++|++||++++. .+++|++++||.+.+ +.+.+.+. ...+|+||+|+++.++
T Consensus 613 GADalRl~l~~~~~~~~d~~f~~~~v~e~~r~~~~~lwN~~rF~~~y~~ld~f~~~~~~~~~~~~~~~DrWils~l~~~i 692 (1042)
T PRK06039 613 GADALRWYLLSSSVPWEDLRFSEDGIREVVRKFLLPLWNVYSFFALYANLDGFDPNEAEEALDSRNELDRWILSRLNSLV 692 (1042)
T ss_pred CCHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 82799999996677555615779999999999999999999999874210279954355563216687899999999999
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC--------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC
Q ss_conf 99999988168899999999999999999986211000221--------7999999999999997223438999999982
Q gi|254780802|r 715 ERIEENYQNLSFNKAVANIHELVNVISKPLMEIAKKKSNAD--------RISTIRYILEKLIIMMSPMIPHLAEECWQLL 786 (869)
Q Consensus 715 ~~v~~~~e~~~f~~ai~~i~~f~n~ls~~y~~~~k~~~~~~--------~~~~l~~vl~~l~~lLaPi~PhiaEEiw~~L 786 (869)
+.|+++|++|+|++|++.+++|+++||+||++++|+|.+.+ +..||+++|..+++|||||+||+||||||.|
T Consensus 693 ~~v~~~~~~y~~~~a~~~l~~Fi~dLs~wYi~~~r~R~~~~~~~~~k~~A~~tL~~vL~~l~~llAP~~PFitEeiyq~L 772 (1042)
T PRK06039 693 KEVTEALDNYDITKAARAIRDFVDDLSNWYIRRSRRRFWKEEDDPDKLAAYNTLYTVLETLSRLMAPFTPFIAEEIYQNL 772 (1042)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC
T ss_conf 99999997245999999999999887799999977876036897899999999999999999996501367699999844
Q ss_pred ---CCCCCEEECCCCCCCHHH
Q ss_conf ---899835517886659678
Q gi|254780802|r 787 ---GNAGLVAQQKWPKLDPIL 804 (869)
Q Consensus 787 ---g~~~~i~~~~WP~~d~~~ 804 (869)
+..+|||+++||++|+.+
T Consensus 773 ~~~~~~eSVHl~~~P~~~~~~ 793 (1042)
T PRK06039 773 KGETGPESVHLADWPEVDESL 793 (1042)
T ss_pred CCCCCCCEEEEECCCCCCHHH
T ss_conf 558999517981467766121
No 6
>KOG0435 consensus
Probab=100.00 E-value=0 Score=1310.52 Aligned_cols=815 Identities=42% Similarity=0.772 Sum_probs=719.9
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
Q ss_conf 89998999999998598036767888838998077897898740047797789999997771898556768814020589
Q gi|254780802|r 8 PQETDSIWQSAWYDSNIFKAENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPA 87 (869)
Q Consensus 8 ~~~iE~kwq~~W~~~~~fe~~~~~~~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPi 87 (869)
.+.||+.|+++|++...|..+.+.+++| ||+.+||||+|.|||||.|.|||.|++|||+||+||||++|||||.+|||+
T Consensus 32 ~~~iEk~W~~~~~~~~~~~~~~d~sk~K-YiLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGLPA 110 (876)
T KOG0435 32 IAMIEKHWKQYLKDGFPFSKDSDKSKKK-YILSMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGLPA 110 (876)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCC-EEEEECCCCCCCCCCCCEEEEEEHHHHHHHHHHCCCEEECCCCCCCCCCCH
T ss_conf 7777788999875378665634357873-699736788876112642799725889999985486421577630348835
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCC
Q ss_conf 99999809999999999999999999981917664698214773599999999999998896341221332147767677
Q gi|254780802|r 88 ENAAREHNVHPKMWTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVL 167 (869)
Q Consensus 88 e~~~~e~~~~~~~~~~~~i~~~k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~pV~wcp~~~t~l 167 (869)
|++|+|++++|+.|+.++|+.||+|+++||+++||+|+..|++|+||+|+||+|.+|+++||.||.+.+|||||.++|+|
T Consensus 111 ENAAiergv~P~sWT~~NI~~Mk~Ql~~lg~~FDWdrEiSTC~PdYYKWTQwiFlkLfe~GLAYq~Ea~VNWDPvD~TVL 190 (876)
T KOG0435 111 ENAAIERGVHPASWTINNIAKMKQQLKSLGISFDWDREISTCEPDYYKWTQWIFLKLFEKGLAYQAEAEVNWDPVDKTVL 190 (876)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEE
T ss_conf 66787548892054698999999999973760124553234783156789999999997112211135366572012153
Q ss_pred CHHHH-HCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89898-43853345643223347523343034445443210022554322222100014557675453555677777751
Q gi|254780802|r 168 ANEQV-INGRGWRSDAPVEQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIRWEIVSNTIDQIE 246 (869)
Q Consensus 168 a~~Ev-~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 246 (869)
|+.+| .+|.+||+|++||++.+.|||+++++|+.+|++++++|.+||+ |+.||+||||+++|+++.|++.+.... ++
T Consensus 191 AnEQVD~~G~SWRSGA~VEkK~LrQWfikttaYAk~L~d~L~~L~~W~~-vk~mQrnWIG~~~G~el~F~ll~~~~~-de 268 (876)
T KOG0435 191 ANEQVDADGCSWRSGAKVEKKKLRQWFIKTTAYAKRLLDGLETLPEWPE-VKDMQRNWIGRCDGAELMFPLLDDGSN-DE 268 (876)
T ss_pred CCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCCCCCEEEEEEECCCCCC-CC
T ss_conf 2201035575534565465778888986316889999999875030166-899987431245420798783268778-74
Q ss_pred EEEEEEECCCCCCCCCEEEEECCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEEEE
Q ss_conf 36532001344432320033024432034541314589998865311112455543025532378610377777415776
Q gi|254780802|r 247 EILVYTTRPETIFGASFIAIAVDHSISEKLSCDNTDIKEFCDEEKQKGTSLSVLDKTEKKGIYTGIHVKHPLNPNVVIPV 326 (869)
Q Consensus 247 ~l~~~TtrPeTl~g~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~P~~~~~~ipv 326 (869)
.|.++|||||||||+++++++++|.++.+.. .++++..... .+.+|.+.+.+++||++++ .+||
T Consensus 269 ~ltv~Tt~Petl~~~~f~vl~~~H~L~~~~~----~lkefl~~~~-----------l~~Kg~~lp~~A~Np~tg~-~iPv 332 (876)
T KOG0435 269 ILTVYTTRPETLFGASFLVLAPSHSLLDKDS----SLKEFLSKSD-----------LPQKGVQLPCQAKNPVTGR-AIPV 332 (876)
T ss_pred EEEEEECCCHHHCCCEEEEECCCCHHHHHHC----HHHHHHHHHH-----------CCCCCCCCCEEECCCCCCC-EEEE
T ss_conf 5899945824422625799737754665303----3877644443-----------2366753541431677776-2017
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCC-CCHHHHHHH
Q ss_conf 3112345453332221113467211012210354432101677655542221121012334458300013-564665488
Q gi|254780802|r 327 YIANFVFMNYGTGAIFGCPFADQRDMDFAKKYGLPIIPIMKRSINHSQDIEEGKAFSGDGIMINSSFLDG-MTNTEALQA 405 (869)
Q Consensus 327 ~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~k~glpi~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~ 405 (869)
+.+++|....|||+||++|+|+.+|++++++.|+..+..+.. .+.. .+....+....+ +.+++|..+
T Consensus 333 ~~a~~v~~~~gt~a~m~~P~hd~rD~ela~~~~~~~~~~~~~--~f~~----------~~K~~~~~~~tn~~~~q~a~~~ 400 (876)
T KOG0435 333 VVADYVLDPYGTGAVMGAPGHDQRDKELAQKIGIKWIICIEV--IFTN----------FGKKNEQKAFTNLDIRQNAALK 400 (876)
T ss_pred EEECHHCCCCCCCEEEECCCCCCCHHHHHHCCCCEEEEEEEE--EECC----------HHHHHCCCCCCCHHHHHHHHHH
T ss_conf 985101367776104536676641068886346406888743--2156----------2443202255415578889999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCHHHHH
Q ss_conf 89999740467752022211100011122112322222342233346846347420001110010002245421002456
Q gi|254780802|r 406 VMSHLEKQNIKNSPIGKRKINFRLRDWCISRQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTW 485 (869)
Q Consensus 406 i~~~l~~~~~~~~~~~~~~~~~~l~DW~ISRqr~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l~~~~~~ 485 (869)
+.+..+..++ |+.+++++|+||.||||||||+||||.+|++||.+++|+++|||.+|+-..|+..|+||+....|
T Consensus 401 l~~~~~~~g~-----g~~~vs~kLkDWLiSRQRyWGTPIPivhc~~cG~vpVpes~LPV~LP~l~~~~~kG~Pls~~~e~ 475 (876)
T KOG0435 401 LFQFAERKGV-----GGYVVSYKLKDWLISRQRYWGTPIPIVHCDDCGAVPVPESELPVTLPELNDFTPKGPPLSKADEW 475 (876)
T ss_pred HHHHHHHCCC-----CCCEECCHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 9999874378-----76232113355643222216898645876788864575887885465312357889964123656
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 42110136764435643234566643332233555654-41013566411433440145554433202345553201347
Q gi|254780802|r 486 KKIFCVKCGSEALRETDTMDTFVDSSWYYMRYMTPHAK-DPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKI 564 (869)
Q Consensus 486 ~~~~~~~~~~~~~r~~dvld~w~dS~~~~~~~~~~~~~-~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~ 564 (869)
.++.|++||..+.||+|+||+|+||+|||+||++|++. .|++++..++|+|||+||+|.+|+++|++|+|||+++|+++
T Consensus 476 vn~~cP~cg~pAkRETDTMDTFvDSsWYYlRylDpkN~e~~~d~a~a~k~MPVDvYIGG~EHAvlHLlYaRF~~kFl~di 555 (876)
T KOG0435 476 VNVDCPRCGEPAKRETDTMDTFVDSSWYYLRYLDPKNPEEPFDKAKAKKNMPVDVYIGGKEHAVLHLLYARFIAKFLKDI 555 (876)
T ss_pred EECCCCCCCCCCCCCCCCCCHHHCCCEEEEEECCCCCCCCCCCHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 13568667996434555410010031356762378985454425565326861588554899999999999999987552
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCC
Q ss_conf 87322320022223553232243323587001306202210256777544110489706404742100000012222100
Q gi|254780802|r 565 GYIEIDEPFKRLFTQGMVVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKV 644 (869)
Q Consensus 565 g~~~~~~pf~~l~~~G~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~ 644 (869)
|.+...|||++|++||||++..++.++ +|+|+.|.++....-.+ ..+.+...+.++....+||||||+|+|+|.++
T Consensus 556 ~~~~t~EPF~~Li~QGmV~G~tf~~~~--sG~yl~~~ev~~~nd~~--~~~vlk~~~e~~v~t~eKMSKSK~NGVdP~~~ 631 (876)
T KOG0435 556 GVVSTAEPFTKLITQGMVRGKTFRTKE--SGKYLGPEEVQQVNDHQ--NKFVLKNDKEVVVVTYEKMSKSKHNGVDPADV 631 (876)
T ss_pred CCCCCCCCHHHHHHHHCCCCEEEECCC--CCCCCCHHHHHHHCCCC--CEEEECCCCCCEEEEHHHHHHCCCCCCCHHHH
T ss_conf 877688748888751000341786277--77627877766634776--63575379950354488732023579898999
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC----C-------CCCCHHHHHHHHHHHHH
Q ss_conf 123463356665530133211111343210114556778899999763024----6-------67897569999999999
Q gi|254780802|r 645 IKSYGADTARLFVLSDSPPDRDIIWSNKGVDSTYQFIQQIWRLIYNAKDEL----Q-------TSSTKKDISLISKSTKF 713 (869)
Q Consensus 645 i~~yGaD~lRl~~~~~~~~~~d~~~s~~~i~~~~rfl~kl~~l~~~~~~~~----~-------~~~~~~D~~ils~~~~~ 713 (869)
+.+||+|++|+|+++++|+.++++|+++.+.|+.|+++|+|++.....+.- . ......++.+.+..|.+
T Consensus 632 v~~yG~D~tRl~ilf~ap~~~~~nW~es~i~Gi~rwl~riw~l~~~~~~ar~~g~~~d~~~~td~~dae~~kl~~~~n~f 711 (876)
T KOG0435 632 VLEYGVDTTRLYILFAAPPRDPINWNESAIPGIKRWLQRIWALVSQILQARDDGKAKDLKKLTDGFDAETRKLKETYNFF 711 (876)
T ss_pred HHHHCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 98848317789998617865666666332454999999999998877777752786556544443313678999999999
Q ss_pred HHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCE
Q ss_conf 999999988168-8999999999999999999862110002217999999999999997223438999999982899835
Q gi|254780802|r 714 LERIEENYQNLS-FNKAVANIHELVNVISKPLMEIAKKKSNADRISTIRYILEKLIIMMSPMIPHLAEECWQLLGNAGLV 792 (869)
Q Consensus 714 i~~v~~~~e~~~-f~~ai~~i~~f~n~ls~~y~~~~k~~~~~~~~~~l~~vl~~l~~lLaPi~PhiaEEiw~~Lg~~~~i 792 (869)
|++|+++||.-. +|+|++.+|.|.|.|.+-+..... ........|+.+++||+|++||+|+|+|+.|++..+.
T Consensus 712 i~~vt~~~e~~~slNtaIS~~m~ltN~l~~a~k~~~~------h~~~~~~al~~lv~mlaP~aPh~asE~Ws~l~~~~~~ 785 (876)
T KOG0435 712 IKQVTEHYEVLFSLNTAISDMMGLTNALKKALKIVLV------HSPEFERALEALVIMLAPFAPHVASELWSALANDLSW 785 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCC
T ss_conf 9875678888888889999999887899875233411------4737889999999997125754589999998422401
Q ss_pred -EECCCCCCCHHHHHCCCCEEEEEECCEEEEEEECCCC-CCH--HHHHHHHHCCHHHHHHHCCCCCEEEEECC-CCEEEE
Q ss_conf -5178866596786037714989973816679980888-899--99999997478889984699825999818-905757
Q gi|254780802|r 793 -AQQKWPKLDPILEVNTDIILPIQVNGKKRACITVSMN-TDD--DFIKKTVLELNVIKNILQGKSPKKIIIIS-KRIVNI 867 (869)
Q Consensus 793 -~~~~WP~~d~~~~~~~~~~~~iqingk~r~~i~v~~~-~~~--~~i~~~~~~~~~i~~~l~~k~~~k~I~v~-~klin~ 867 (869)
....||++|+.++.+.+ .++||||||.|.++++... +++ +++...+++.+.+...+.|++|||-+|+| .||||+
T Consensus 786 ~~~~~WP~vd~~~~~~~~-~~~v~INGk~~g~i~v~~~~l~~~~d~~~e~a~~~e~~~ryL~gkkIkks~~~~r~kiin~ 864 (876)
T KOG0435 786 VSDVKWPEVDPDYLIEFE-VLPVQINGKVRGKIEVDRRILEEMMDDALEFALQTEDGRRYLKGKKIKKSFYVPRRKIINF 864 (876)
T ss_pred HHCCCCCCCCHHHHCCCC-EEEEEECCEECCEEECCHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHEECHHHHHHHH
T ss_conf 311677657844640520-2358985783646624667887778899999860778888863750554200206778888
Q ss_pred EC
Q ss_conf 79
Q gi|254780802|r 868 VV 869 (869)
Q Consensus 868 vi 869 (869)
++
T Consensus 865 i~ 866 (876)
T KOG0435 865 IL 866 (876)
T ss_pred HH
T ss_conf 87
No 7
>TIGR00392 ileS isoleucyl-tRNA synthetase; InterPro: IPR002301 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Isoleucyl-tRNA synthetase (6.1.1.5 from EC) is an alpha monomer that belongs to class Ia. The enzyme, isoleucyl-transfer RNA synthetase, activates not only the cognate substrate L-isoleucine but also the minimally distinct L-valine in the first, aminoacylation step. Then, in a second, "editing" step, the synthetase itself rapidly hydrolyzes only the valylated products , as shown from the crystal structures. ; GO: 0000166 nucleotide binding, 0004822 isoleucine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006428 isoleucyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=1310.09 Aligned_cols=715 Identities=24% Similarity=0.378 Sum_probs=568.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCC--CCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 88765689998999999998598036--7678888389980778978987400477977899999977718985567688
Q gi|254780802|r 2 ETRSYSPQETDSIWQSAWYDSNIFKA--ENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMG 79 (869)
Q Consensus 2 ~~~~y~~~~iE~kwq~~W~~~~~fe~--~~~~~~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G 79 (869)
.-+.+||+.+|+++|++|+++++|+. +.++++++|+|+||||||||.||+|||+|++|||+|+||++|+||+|.|.||
T Consensus 2 ~~~~~nl~~~E~~~~~~W~~~dif~~~~~~~~~~~~F~lhDGPPYAnG~iHlGHalNKilKDii~Ryk~m~G~~v~~~pG 81 (938)
T TIGR00392 2 FPMRGNLSKREEKILKFWQEKDIFEKVKKRNKDKPEFVLHDGPPYANGAIHLGHALNKILKDIILRYKTMQGYNVTYKPG 81 (938)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEECCCCCC
T ss_conf 88778821257577766778999999998508998358744858767997402556667611232101122500320478
Q ss_pred CCCCCHHHHHHHHH------------------HCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCEECCCHHHHHHHHHHH
Q ss_conf 14020589999998------------------099999999999999999999819176646982147735999999999
Q gi|254780802|r 80 WDAFGMPAENAARE------------------HNVHPKMWTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLF 141 (869)
Q Consensus 80 ~d~~GlPie~~~~e------------------~~~~~~~~~~~~i~~~k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f 141 (869)
|||||||||.++++ .+..||++|.++++.|++||+|||+|+||+++|.|||+.|++.+||+|
T Consensus 82 WDtHGLPIE~~Vek~lg~~~~~~~~~~~g~E~fr~~Cr~~A~~~~~~q~~~F~rLG~w~Dwe~pY~T~d~~y~~~~w~~l 161 (938)
T TIGR00392 82 WDTHGLPIELKVEKKLGISGKKEIESLEGIEEFREKCREFALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLL 161 (938)
T ss_pred CCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCCCCCCCCHHHHHHHHHHH
T ss_conf 66578702445640478764000220443899999999999999999998888531202255785067889999999999
Q ss_pred HHHHHCCCEEECCEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 999988963412213321477676778989843853345643223-3475233430344454432100225543222221
Q gi|254780802|r 142 LDFMKHNVIVRKTAQVNWDPVEQTVLANEQVINGRGWRSDAPVEQ-RSLPQWFFKISDLSQELLDSIETLSEWPEKVKIM 220 (869)
Q Consensus 142 ~~L~~kGliyrg~~pV~wcp~~~t~la~~Ev~~g~~~~~~~~v~~-~~~~~~~~~~~~~~~~l~~~~~~l~~~p~~v~~~ 220 (869)
.+|++||||||+.+||+|||+|+||||+|||++++++| + ++.|++|.+++-..+.....
T Consensus 162 ~~~~eKGL~~~~~kpv~WSp~~~TaLAeaE~ey~~~Y~------d~v~dpS~yv~F~~~~~~~~~r-------------- 221 (938)
T TIGR00392 162 KELHEKGLLYRGLKPVYWSPRCETALAEAEVEYKEEYK------DNVKDPSIYVKFPVKKDSKTER-------------- 221 (938)
T ss_pred HHHHHCCCEEECCEEECCCCCCCCHHHHHHHCCCCCCC------CCCCCCEEEEEEEEECCCHHHH--------------
T ss_conf 99975242022552211441446702476305887321------5760622889875315612567--------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCHHHHHC----CHHH----HHHHHHHHH
Q ss_conf 00014557675453555677777751365320013444323200330244320345413----1458----999886531
Q gi|254780802|r 221 QKNWIGRSEGMEIRWEIVSNTIDQIEEILVYTTRPETIFGASFIAIAVDHSISEKLSCD----NTDI----KEFCDEEKQ 292 (869)
Q Consensus 221 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~TtrPeTl~g~~~i~v~~~~~~~~~~~~~----~~~~----~~~~~~~~~ 292 (869)
. +.+. .+........|+|||||||||++|.+|||+||.+|+...... ..+. ...++....
T Consensus 222 --------h-~~~~---~~~~n~~~~~l~iWTTTPWTLPaN~Aiav~pd~eY~~~~~~~~y~g~~~~~i~a~~L~e~l~~ 289 (938)
T TIGR00392 222 --------H-AKVK---LSGVNGLDISLVIWTTTPWTLPANLAIAVHPDFEYALVQLETDYSGKEEYLILAKKLVEKLLN 289 (938)
T ss_pred --------H-HHHH---CCCCCCCCCEEEEECCCCCHHHHHHHEEECCCEEEEEEEECCCCCCCEEEEEEHHHHHHHHHH
T ss_conf --------8-8742---687578886899966887144664160114450689998668746631255512567898864
Q ss_pred -HHH----HHHHHHHHCCCCCCCCCEECCCCCCCEE--------------------EEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf -111----2455543025532378610377777415--------------------776311234545333222111346
Q gi|254780802|r 293 -KGT----SLSVLDKTEKKGIYTGIHVKHPLNPNVV--------------------IPVYIANFVFMNYGTGAIFGCPFA 347 (869)
Q Consensus 293 -~~~----~~~~~~~~~~~~~~~G~~~~~P~~~~~~--------------------ipv~~~~~V~~~~GTG~V~~~P~h 347 (869)
.+. .-..+.++.++..|.|+.|+|||..... .-|+.|+||+.+.||||||+||||
T Consensus 290 ~~g~~h~~~~~e~~~~~kG~~Le~l~Y~hpl~~~~~~~~~m~~~~L~~~~~~~e~~~~v~~gdhVT~~~GTG~VHtAPgh 369 (938)
T TIGR00392 290 KLGVEHDITDYEIIKTFKGSDLEGLEYEHPLYDKVSQLKGMVVEELIERVDEKEGAPVVIGGDHVTTEDGTGIVHTAPGH 369 (938)
T ss_pred HCCCCCCCCCEEEEEEECCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCEEECCCCCEEEECCCCC
T ss_conf 21553453110786555164416524652665322011563252322310689864489840045468897226878898
Q ss_pred CCCCCHHHHCCCC--CCCCCCCCCCCCCCCCCC---------H-H--HCC-----------C----------------CC
Q ss_conf 7211012210354--432101677655542221---------1-2--101-----------2----------------33
Q gi|254780802|r 348 DQRDMDFAKKYGL--PIIPIMKRSINHSQDIEE---------G-K--AFS-----------G----------------DG 386 (869)
Q Consensus 348 ~~~D~~~~~k~gl--pi~~v~~~~~~~~~~~~~---------~-~--~~~-----------~----------------~~ 386 (869)
|++||.+|+|||| ++..++|+.|.+...+.. + . .+. + .+
T Consensus 370 G~eDy~~g~kygl~~e~~~pvD~~G~y~~~~~~~~G~~v~~~d~~yi~~~~R~V~~Ayd~~An~~I~~~L~~~~~Ll~~e 449 (938)
T TIGR00392 370 GEEDYEIGKKYGLPDEVLSPVDEKGVYTEEVADFKGRFVKDADKDYIIIKGRYVKDAYDDEANKIIIEQLKDKGLLLKAE 449 (938)
T ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCEEEECCCCEEEECCCEEECHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 73289999982898643146687760336677744541664487224543741000433468999999984269778876
Q ss_pred CCCCCHHHCCC---------------CH--HHHHHHHHHHHHHHCCCCCCHHHHHHHHHC---CCCCCCCCCCCCCCCCC
Q ss_conf 44583000135---------------64--665488899997404677520222111000---11122112322222342
Q gi|254780802|r 387 IMINSSFLDGM---------------TN--TEALQAVMSHLEKQNIKNSPIGKRKINFRL---RDWCISRQRSWGCPIPV 446 (869)
Q Consensus 387 ~~~~~~~~~g~---------------~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l---~DW~ISRqr~WG~piPv 446 (869)
.+.|+++++|+ .. ++.+..+++.+++-.+-+.+.|..|...++ +||||||||+||+|||+
T Consensus 450 ~i~H~YPhcWRtk~P~IYRAt~QWF~~~D~~~~k~~~L~~i~~v~W~P~~~k~~R~~~~~~n~~DWcISRQR~WG~PIP~ 529 (938)
T TIGR00392 450 KITHSYPHCWRTKTPVIYRATEQWFIKIDEKKIKDQMLEEIKKVKWVPEWGKEGRFKNWLENRKDWCISRQRYWGVPIPV 529 (938)
T ss_pred EEECCCCCCCCCCCCEEEECCCCCEEECCHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHCCCCCEEECCCCCCCCCEE
T ss_conf 65505877077898457204722146635477789999862832761463221467887611676526335625897406
Q ss_pred CCCCCCCCE--ECCC--CCC---C-HHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC-CCCCCC
Q ss_conf 233346846--3474--200---0-111001000224542100245642110136764435643234566643-332233
Q gi|254780802|r 447 IHCQKCGIV--ELPK--EDL---P-VQLPEDLDFTLPGNPLENHPTWKKIFCVKCGSEALRETDTMDTFVDSS-WYYMRY 517 (869)
Q Consensus 447 ~~~~~~~~~--~~~~--~~l---~-v~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~dvld~w~dS~-~~~~~~ 517 (869)
|+|++|+.. .+.+ +++ . ++-..+.|+..-+.++- +.....|.+|+++|.|++|||||||||| .+++..
T Consensus 530 w~~e~~~~~~l~~~gsi~el~~~~~~~~G~~~w~~d~~~~~~---d~~~~~~~~g~~~y~r~~DvlDVWFDSGs~~~A~~ 606 (938)
T TIGR00392 530 WYCEDTGEPVLIVVGSIEELEELIEVEKGIDAWFEDLHKDLL---DKITLESGSGGGEYRRVPDVLDVWFDSGSMPYAVL 606 (938)
T ss_pred EEECCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCC---CCCCCCCCCCCCCEEEECEEEEEECCCCHHHHHHH
T ss_conf 886678832677604089999999987256632223444457---74134588998425871215545114001179986
Q ss_pred CCCCCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5556544101356641143344014555443320234555320134787322---3200222235532322433235870
Q gi|254780802|r 518 MTPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIGYIEI---DEPFKRLFTQGMVVHETYYQLEGIK 594 (869)
Q Consensus 518 ~~~~~~~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~g~~~~---~~pf~~l~~~G~v~~~~~~~~~~~~ 594 (869)
.. +.+.+.++..+|||+|+||+||+ |+|+++++.+|++.. ..|||+|++||+++|+
T Consensus 607 ~~-----~~~~~~~~~~~pAD~i~EG~DQ~-------RGWFySsl~~~~~~~nv~~~PYK~Vi~hGF~LDe--------- 665 (938)
T TIGR00392 607 HY-----PFENEKFKEVFPADFILEGSDQT-------RGWFYSSLLIGVALFNVGKAPYKNVITHGFTLDE--------- 665 (938)
T ss_pred HC-----CCCCHHHCCCCCCEEEEECCCCC-------CHHHHHHHHHHHHHHCCCCCCCCEEEECCEEECC---------
T ss_conf 32-----32100103578302686033555-------3277999999999870788543634531548857---------
Q ss_pred CEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCCC--------CCCHHHHHHHHHHC-CCCCC
Q ss_conf 0130620221025677754411048970640474210000001222210012--------34633566655301-33211
Q gi|254780802|r 595 KKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIK--------SYGADTARLFVLSD-SPPDR 665 (869)
Q Consensus 595 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~--------~yGaD~lRl~~~~~-~~~~~ 665 (869)
+|+|||||+||||+|.++|+ +||||+||||+++. +.++.
T Consensus 666 --------------------------------~G~KMSKSlGNvV~P~~v~~G~~N~~~P~yGAD~LRlyv~~~P~~~~~ 713 (938)
T TIGR00392 666 --------------------------------KGRKMSKSLGNVVDPEKVINGDENLKLPKYGADILRLYVASSPSDYWE 713 (938)
T ss_pred --------------------------------CCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCHH
T ss_conf --------------------------------785445325870385997088433588753304877778846874000
Q ss_pred CCCCCCCCHHHHHH----HHHHHHHHHH--HHHCCCCCCC--------CHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 11134321011455----6778899999--7630246678--------97569999999999999999988168899999
Q gi|254780802|r 666 DIIWSNKGVDSTYQ----FIQQIWRLIY--NAKDELQTSS--------TKKDISLISKSTKFLERIEENYQNLSFNKAVA 731 (869)
Q Consensus 666 d~~~s~~~i~~~~r----fl~kl~~l~~--~~~~~~~~~~--------~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai~ 731 (869)
|+.|+++.+..+.+ .++++++|+. ++.+.+++.. ..+|+|||++++.+++.|+++||+|+|.++++
T Consensus 714 Dl~~~~~~~~~v~~~~~~~~~N~~~Fl~~YanL~~f~p~~~~~~~~~~~~~Drw~L~~l~~l~~~v~~~~e~Y~f~~~~~ 793 (938)
T TIGR00392 714 DLRFSDEILKQVAEKYRKIRWNTYRFLLTYANLDKFDPEEKAVAVEKFRELDRWILSRLNSLVEEVNEALEKYNFHKVLR 793 (938)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 22006689999999876889999999999887607787300231120301139999999999999999862632467888
Q ss_pred HHHHHHH-HHHHHHHHHCCCCCCCC---------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC-----------CC
Q ss_conf 9999999-99999986211000221---------799999999999999722343899999998289-----------98
Q gi|254780802|r 732 NIHELVN-VISKPLMEIAKKKSNAD---------RISTIRYILEKLIIMMSPMIPHLAEECWQLLGN-----------AG 790 (869)
Q Consensus 732 ~i~~f~n-~ls~~y~~~~k~~~~~~---------~~~~l~~vl~~l~~lLaPi~PhiaEEiw~~Lg~-----------~~ 790 (869)
.|++|+. +||+||++++|+|.+++ .++||+++|.+++++||||+||+||++|+.|.. +.
T Consensus 794 ~l~~F~~~~LS~wY~~~~rdr~y~~~~~~~~rr~~q~tL~~~l~~l~~~lAP~~Ph~ae~~y~~l~~~~~~~l~~~~~~~ 873 (938)
T TIGR00392 794 ALQDFIVEELSNWYIRIIRDRLYIEAKDNDKRRAAQTTLYYALLTLVKLLAPILPHTAEEIYQNLKGEKPELLKYEEDEE 873 (938)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCC
T ss_conf 89876312000456666543422578981789999999999999999987011579999998642401022300267877
Q ss_pred CEEECCCCCCCHHH
Q ss_conf 35517886659678
Q gi|254780802|r 791 LVAQQKWPKLDPIL 804 (869)
Q Consensus 791 ~i~~~~WP~~d~~~ 804 (869)
|||..+||++|++.
T Consensus 874 sv~~~~~~~~~~e~ 887 (938)
T TIGR00392 874 SVHLNDWPEVDEEF 887 (938)
T ss_pred CCCCCCCCCCCHHH
T ss_conf 50236676631455
No 8
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=0 Score=1252.01 Aligned_cols=636 Identities=27% Similarity=0.469 Sum_probs=510.8
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 87656899989999999985980367678888389980778978987400477977899999977718985567688140
Q gi|254780802|r 3 TRSYSPQETDSIWQSAWYDSNIFKAENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDA 82 (869)
Q Consensus 3 ~~~y~~~~iE~kwq~~W~~~~~fe~~~~~~~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~ 82 (869)
.|+|||++||++||++|+++++|++++++++++|+|++||||+||.|||||++|+|++|+++||+||+||+|+|+|||||
T Consensus 4 ~~~Y~~~~iE~k~~~~W~~~~~f~~~~~~~~~~f~~~~pPP~~~G~lHiGHa~~~~i~D~i~Ry~rm~G~~V~~~pG~D~ 83 (877)
T PRK05729 4 PKTYDPKEVEAKWYQKWEEKGYFKPDGDKSKKPFSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDH 83 (877)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 57899399999999999857997378778999779972889887986121667488999999998727996688898688
Q ss_pred CCHHHHHHHHHH----CC------------CHHHHHHHHHHHHHHHHHHCCCEEECCCCEECCCHHHHHHHHHHHHHHHH
Q ss_conf 205899999980----99------------99999999999999999981917664698214773599999999999998
Q gi|254780802|r 83 FGMPAENAAREH----NV------------HPKMWTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMK 146 (869)
Q Consensus 83 ~GlPie~~~~e~----~~------------~~~~~~~~~i~~~k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~ 146 (869)
||||+|..+++. +. .|++|++++.+.+++||+|||+|+||+|+|.||||.|+++|+|+|.+|++
T Consensus 84 ~Gl~~e~~vek~l~~~g~~~~~~~re~f~~~~~~w~~~~~~~i~~q~~rlG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~ 163 (877)
T PRK05729 84 AGIATQMVVERQLAAEGKTRHDLGREKFLEKVWEWKEESGGTITNQLRRLGASVDWSRERFTMDEGLSKAVREVFVRLYE 163 (877)
T ss_pred CCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 86056899999998749983544899999999999999999999999982860335898455898899999999999998
Q ss_pred CCCEEECCEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89634122133214776767789898438533456432233475233430344454432100225543222221000145
Q gi|254780802|r 147 HNVIVRKTAQVNWDPVEQTVLANEQVINGRGWRSDAPVEQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIG 226 (869)
Q Consensus 147 kGliyrg~~pV~wcp~~~t~la~~Ev~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~i~ 226 (869)
+||||||.+||+|||+|+|||||+||++.+. +-+.+|
T Consensus 164 kGliyr~~~~V~wcp~~~Tals~~EV~~~~~----------~~~~~~--------------------------------- 200 (877)
T PRK05729 164 KGLIYRGKRLVNWDPKLQTALSDLEVEYKEV----------KGKLWH--------------------------------- 200 (877)
T ss_pred CCCEEECCEECCCCCCCCCHHHHHHHHCCCC----------CCCEEE---------------------------------
T ss_conf 8997841312366887788435678732456----------673389---------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 57675453555677777751365320013444323200330244320345413145899988653111124555430255
Q gi|254780802|r 227 RSEGMEIRWEIVSNTIDQIEEILVYTTRPETIFGASFIAIAVDHSISEKLSCDNTDIKEFCDEEKQKGTSLSVLDKTEKK 306 (869)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~l~~~TtrPeTl~g~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (869)
++|++.+ ...+++|||||||||||+++++|+|+.+..
T Consensus 201 ------ikf~l~~----~~~~l~i~TTrPeTl~~~~avav~P~dery--------------------------------- 237 (877)
T PRK05729 201 ------IRYPLAD----GSDYLVVATTRPETMLGDTAVAVNPEDERY--------------------------------- 237 (877)
T ss_pred ------EECCCCC----CCCEEEEECCCCCCCCCCEEEEECCCCHHH---------------------------------
T ss_conf ------8413247----887476501685234464578846887488---------------------------------
Q ss_pred CCCCCCEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCH-------
Q ss_conf 3237861037777741577631123454533322211134672110122103544321016776555422211-------
Q gi|254780802|r 307 GIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIFGCPFADQRDMDFAKKYGLPIIPIMKRSINHSQDIEEG------- 379 (869)
Q Consensus 307 ~~~~G~~~~~P~~~~~~ipv~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~k~glpi~~v~~~~~~~~~~~~~~------- 379 (869)
..|+|+.+.||++++ .+||++++||++++|||+||+|||||++||+++++|+||++++++..|..+....+-
T Consensus 238 ~~l~Gk~~~~P~~~~-~ipii~d~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~id~~G~~~~~~~~~~G~~~~~ 316 (877)
T PRK05729 238 KHLIGKKVILPLVGR-EIPIIADEYVDPEFGTGAVKITPAHDFNDFEVGKRHNLPMINIMDEDGTINENAGEYQGLDRFE 316 (877)
T ss_pred HHHCCCEEEECCCCC-EEEEEECCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHCCCCCHHH
T ss_conf 985598898058897-5328715752677784617971689978999887648874346566764045741029970889
Q ss_pred ------HHCCCCCC------CCCCHHHCC---------------CCHHHHHHHHHHHHHHHCCCCCCHHHHHHH--H--H
Q ss_conf ------21012334------458300013---------------564665488899997404677520222111--0--0
Q gi|254780802|r 380 ------KAFSGDGI------MINSSFLDG---------------MTNTEALQAVMSHLEKQNIKNSPIGKRKIN--F--R 428 (869)
Q Consensus 380 ------~~~~~~~~------~~~~~~~~g---------------~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~--~--~ 428 (869)
..+...|. +.++.++++ +..++.++.+++.++.+.+...|...+... | .
T Consensus 317 ar~~Ii~~L~~~g~l~~~~~~~h~~p~~~R~~~pi~~~~~~QWFi~~~~l~~~~l~~~~~~~i~~~P~~~~~~~~~wl~n 396 (877)
T PRK05729 317 ARKAIVADLEELGLLVKIEPHKHSVGHSDRSGVVIEPYLSDQWFVKMKPLAKPALEAVEDGKIKFVPKRWENTYFHWMEN 396 (877)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCEECCCHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHC
T ss_conf 88999999997799774321356787546778569974130100003357999999860588312577888499998605
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCC-CCCCCCCCCCCC
Q ss_conf 0111221123222223422333468463474200011100100022454210024564211013676-443564323456
Q gi|254780802|r 429 LRDWCISRQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTWKKIFCVKCGS-EALRETDTMDTF 507 (869)
Q Consensus 429 l~DW~ISRqr~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~r~~dvld~w 507 (869)
++|||||||||||+|||||||+++. +.+..++ ...|++|+. .+.|++||||+|
T Consensus 397 ~~DWcISRqr~WG~piPvw~~~~~~-~~v~~~~-------------------------~~~~~~~~~~~~~~d~DVlDtW 450 (877)
T PRK05729 397 IQDWCISRQLWWGHRIPAWYDEDGE-VYVGRTE-------------------------PEARAKAGSENLTQDEDVLDTW 450 (877)
T ss_pred CCCCCCCCCCCCCCCEEEEECCCCC-EEECCCH-------------------------HHHHHHCCCCCCEECCCCCCCH
T ss_conf 6555113554468842589918984-8941675-------------------------6644323876525565322334
Q ss_pred CCCC-CCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6643-332233555654410135664114334401455544332023455532013478732232002222355323224
Q gi|254780802|r 508 VDSS-WYYMRYMTPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIGYIEIDEPFKRLFTQGMVVHET 586 (869)
Q Consensus 508 ~dS~-~~~~~~~~~~~~~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~g~~~~~~pf~~l~~~G~v~~~~ 586 (869)
|||+ |+++....| .+.+.+++|||+|++++|.| ++++|++|+++..+...| +.||+++++||+|+|+
T Consensus 451 FsSgl~p~s~lg~p-----~~~~~~~~~~P~d~~~~G~D--ii~fWv~rm~~~~~~~~~----~~Pfk~v~~hG~v~D~- 518 (877)
T PRK05729 451 FSSALWPFSTLGWP-----DKTPDLKRFYPTSVLVTGFD--IIFFWVARMIMMGLHFTG----QVPFKDVYIHGLVRDE- 518 (877)
T ss_pred HHCCCCCCCCCCCC-----CCHHHHCCCCCCCCCCCCCC--HHEEEEEEEECCEEEECC----CCCCHHCCCCCEEECC-
T ss_conf 43166664416686-----52054424788754520655--211344444310320112----3761102004437889-
Q ss_pred CCCCCCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 33235870013062022102567775441104897064047421000000122221001234633566655301332111
Q gi|254780802|r 587 YYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRD 666 (869)
Q Consensus 587 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~~~~~~~~~~d 666 (869)
+|+|||||+||||+|.++|++||||+||||+++.+++++|
T Consensus 519 ----------------------------------------~G~KMSKS~GNvidP~~vi~~yGaDalR~~l~~~~~~g~d 558 (877)
T PRK05729 519 ----------------------------------------QGRKMSKSKGNVIDPLDLIDKYGADALRFTLAALASPGRD 558 (877)
T ss_pred ----------------------------------------CCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCC
T ss_conf ----------------------------------------8877878788989989999871919999999970776766
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHC---CC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 113432101145567788999997630---24-------66789756999999999999999998816889999999999
Q gi|254780802|r 667 IIWSNKGVDSTYQFIQQIWRLIYNAKD---EL-------QTSSTKKDISLISKSTKFLERIEENYQNLSFNKAVANIHEL 736 (869)
Q Consensus 667 ~~~s~~~i~~~~rfl~kl~~l~~~~~~---~~-------~~~~~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai~~i~~f 736 (869)
++|+++.++++++|++++||...+... .. .......|+||+++++++++.++++|++|+|++|++.+++|
T Consensus 559 i~~~~~~v~~~r~f~nKlwN~~rf~~~~~~~~~~~~~~~~~~~~~~D~WIlskL~~~i~~v~~~~~~y~f~~a~~~ly~F 638 (877)
T PRK05729 559 IRFDEERVEGYRNFANKLWNASRFVLMNLEGQDPGFLPDEAELSLADRWILSRLNRTVAEVTEALDKYRFDEAAQALYEF 638 (877)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 00068999999999999999999999724656644456621067879999999999999998750002099999999998
Q ss_pred H-HHHHHHHHHHCCCCCCCC-------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC-CCCEEECCCCCCCHH
Q ss_conf 9-999999986211000221-------799999999999999722343899999998289-983551788665967
Q gi|254780802|r 737 V-NVISKPLMEIAKKKSNAD-------RISTIRYILEKLIIMMSPMIPHLAEECWQLLGN-AGLVAQQKWPKLDPI 803 (869)
Q Consensus 737 ~-n~ls~~y~~~~k~~~~~~-------~~~~l~~vl~~l~~lLaPi~PhiaEEiw~~Lg~-~~~i~~~~WP~~d~~ 803 (869)
+ ++||+||+++.|++.+.+ ...+|+++|+.+++||||||||+|||||+.|++ .+||+.++||++++.
T Consensus 639 ~w~d~cdwYlE~~K~rl~~~~~~~~~~~~~~L~~vL~~~L~lLhPfmPFitEElwq~L~~~~~si~~~~wP~~~~~ 714 (877)
T PRK05729 639 IWNEFCDWYLELAKPVLNGGDEAAKRGTRATLAYVLEEILRLLHPFMPFITEELWQKLAPEGESIMLAPWPEADEA 714 (877)
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCC
T ss_conf 4675578999997997708877889999999999999999985601357599999857788974686379999710
No 9
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=0 Score=1247.03 Aligned_cols=679 Identities=24% Similarity=0.365 Sum_probs=521.7
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCC--CCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 765689998999999998598036--767888838998077897898740047797789999997771898556768814
Q gi|254780802|r 4 RSYSPQETDSIWQSAWYDSNIFKA--ENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWD 81 (869)
Q Consensus 4 ~~y~~~~iE~kwq~~W~~~~~fe~--~~~~~~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d 81 (869)
+++|++++|++||++|+++++|+. +.++++|+|+++||||||||.|||||++|||++|+++||+||+||+|+||||||
T Consensus 17 mr~n~~~~E~~~~~~W~~~~~y~~~~~~~~~~~~f~l~dgPPyanG~lH~GHaln~tlkDii~Rykrm~G~~v~~~pGwD 96 (910)
T PRK05743 17 MRGNLPKREPEILKRWEENDLYQKIREANKGKPKFILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWD 96 (910)
T ss_pred CCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 88895777499999998779076678616998977982799998986424477878999999999875899679999658
Q ss_pred CCCHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHHHHCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCC
Q ss_conf 02058999999809-------------99999999999999999998191766469821477359999999999999889
Q gi|254780802|r 82 AFGMPAENAAREHN-------------VHPKMWTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHN 148 (869)
Q Consensus 82 ~~GlPie~~~~e~~-------------~~~~~~~~~~i~~~k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kG 148 (869)
|||||||.+++++. ..|++|+.++++.|++||+|||+|+||+|+|.||||.|+++++|+|.+|+++|
T Consensus 97 ~hGLPiE~~v~k~~g~~~~~~~~~~f~~~cr~~a~~~i~~~~~q~~rlG~~~DW~~~y~T~d~~y~~~~~~~F~~l~ekG 176 (910)
T PRK05743 97 CHGLPIELKVEKKLGKKRKKLSAAEFRKKCREYALEQVDIQREDFKRLGVLGDWDNPYLTMDFEYEANIIRVLGKMAKKG 176 (910)
T ss_pred CCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCEECCCHHHHHHHHHHHHHHHHCC
T ss_conf 68699999999961998131999999999999999999999999997190264589726689889999999999999869
Q ss_pred CEEECCEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 63412213321477676778989843853345643223347523343034445443210022554322222100014557
Q gi|254780802|r 149 VIVRKTAQVNWDPVEQTVLANEQVINGRGWRSDAPVEQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRS 228 (869)
Q Consensus 149 liyrg~~pV~wcp~~~t~la~~Ev~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~i~~~ 228 (869)
|||||.+||+|||+|+|||||+||++.+ +..+++|.++
T Consensus 177 liYr~~kpV~Wcp~~~TaLA~~EVey~d----------~~s~si~v~f-------------------------------- 214 (910)
T PRK05743 177 YLYKGLKPVYWSPDCGSALAEAEVEYHD----------KTSPSIYVAF-------------------------------- 214 (910)
T ss_pred CEEECCCCCEECCCCCCCCCCHHEECCC----------EECCEEEEEE--------------------------------
T ss_conf 9685782320489999440010100577----------5432599998--------------------------------
Q ss_pred CCCCCCCCCCCCC----CCCCCEEEEEEECCCCCCCCCEEEEECCCCCCHHHHHCCHHH-HHHHHHHHHH-HHHHHHHHH
Q ss_conf 6754535556777----777513653200134443232003302443203454131458-9998865311-112455543
Q gi|254780802|r 229 EGMEIRWEIVSNT----IDQIEEILVYTTRPETIFGASFIAIAVDHSISEKLSCDNTDI-KEFCDEEKQK-GTSLSVLDK 302 (869)
Q Consensus 229 ~~~~~~~~~~~~~----~~~~~~l~~~TtrPeTl~g~~~i~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~ 302 (869)
++.+.. ...+.+++|||||||||+|+++++++|+.+|+..-......+ .+.++..... +.....+..
T Consensus 215 -------~l~~~~~~~~~~~~~~~~iwTTtPwTl~~n~avav~p~~~Y~~~~~~~~~iva~~l~~~~~~~~~~~~~~~~~ 287 (910)
T PRK05743 215 -------PVVDGKAGLDGLKDASLVIWTTTPWTLPANQAIAVHPELDYALVEVGEKLILAKDLVESVLKRLGWEDYEVLA 287 (910)
T ss_pred -------EECCCCCCCCCCCCCEEEEEECCHHHHHCCCEEEECCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCEEEEE
T ss_conf -------9437633334567743999708840342064688778750564036745541998999999984774306653
Q ss_pred HCCCCCCCCCEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCH---
Q ss_conf 02553237861037777741577631123454533322211134672110122103544321016776555422211---
Q gi|254780802|r 303 TEKKGIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIFGCPFADQRDMDFAKKYGLPIIPIMKRSINHSQDIEEG--- 379 (869)
Q Consensus 303 ~~~~~~~~G~~~~~P~~~~~~ipv~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~k~glpi~~v~~~~~~~~~~~~~~--- 379 (869)
..++..|+|+.++||+++ +.+||++++||++++|||+||+|||||++||+++++||||++.+++..|.++....+-
T Consensus 288 ~~~G~~L~g~~~~~P~~~-~~~pii~~d~V~~~~GTG~Vh~aPaHg~~D~~~~~~~~L~~~~~vd~~G~~~~~~~~~~G~ 366 (910)
T PRK05743 288 TFKGAELEGLVAQHPFYD-RDSPVILGDHVTLDAGTGLVHTAPGHGEDDYVVGQKYGLEVLNPVDDDGVYTEEAPLFAGL 366 (910)
T ss_pred EEECCEECCCEEECCCCC-CEEEEEECCCCCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 220535037689767789-6522784473267777611885787984367788764998654458776343677445883
Q ss_pred ----------------HHCCCCCCCCCCHHHCCCCH-----------------HHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf ----------------21012334458300013564-----------------665488899997404677520222111
Q gi|254780802|r 380 ----------------KAFSGDGIMINSSFLDGMTN-----------------TEALQAVMSHLEKQNIKNSPIGKRKIN 426 (869)
Q Consensus 380 ----------------~~~~~~~~~~~~~~~~g~~~-----------------~~~~~~i~~~l~~~~~~~~~~~~~~~~ 426 (869)
+.+...+.+.|+.+++|++. ...++.+++.+.+..+.+. .|+.+..
T Consensus 367 ~v~~a~~~Ii~~L~~~g~L~~~~~~~Hsyp~cwR~~~Pvi~rat~QWFi~~d~~~~r~~~l~~i~~v~~~P~-~~~~r~~ 445 (910)
T PRK05743 367 FVFKANPKIIELLEEKGALLKLEKITHSYPHCWRTKKPIIFRATPQWFISMDKKTLREQALKAIEKVKWIPS-WGKNRIE 445 (910)
T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCEEEECCHHHHHCCCHHHHHHHHHHHHHCCEECH-HHHHHHH
T ss_conf 499889999999987798543421013675332668862676310034234718899999999984674151-6787999
Q ss_pred HHC---CCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC------CHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 000---111221123222223422333468463474200------01110010002245421002456421101367644
Q gi|254780802|r 427 FRL---RDWCISRQRSWGCPIPVIHCQKCGIVELPKEDL------PVQLPEDLDFTLPGNPLENHPTWKKIFCVKCGSEA 497 (869)
Q Consensus 427 ~~l---~DW~ISRqr~WG~piPv~~~~~~~~~~~~~~~l------~v~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 497 (869)
.++ +||||||||+||+|||||||++|+.+.+..+.+ ..+...|.||..... +. .....++..+
T Consensus 446 ~~i~~r~DWcISRQR~WG~PIPv~~~~~~~~~~~~~~~~~~i~~~~~~~G~d~w~~~~~~------~~--l~~~~~~~~~ 517 (910)
T PRK05743 446 SMVENRPDWCISRQRTWGVPIPIFYHKETGELHRTPELIEHVAKLFEKEGIDAWFELDAK------EL--LPEGYPADQY 517 (910)
T ss_pred HHHHCCCCCEEECCCCCCCCEEEEEECCCCEECCCHHHHHHHHHHHHHCCCCCCCCCCHH------HH--CCCCCCCHHE
T ss_conf 997079886252135668822599978997004768889999998875076411239998------83--7898983100
Q ss_pred CCCCCCCCCCCCCC--CCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCC-CCCCCCCC
Q ss_conf 35643234566643--3322335556544101356641143344014555443320234555320134787-32232002
Q gi|254780802|r 498 LRETDTMDTFVDSS--WYYMRYMTPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIGY-IEIDEPFK 574 (869)
Q Consensus 498 ~r~~dvld~w~dS~--~~~~~~~~~~~~~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~g~-~~~~~pf~ 574 (869)
.|++||||+||||| |++.. .+....++|+|+|+||.||. |+|++.++..+. +....||+
T Consensus 518 ~r~~DvlD~WFdSGss~~~~~-----------~~~~~~~~PaDly~eG~Dq~-------RgWF~s~ll~s~~~~~~~Pfk 579 (910)
T PRK05743 518 EKETDILDVWFDSGSTHAAVL-----------EDRERLGYPADLYLEGSDQH-------RGWFQSSLLTSVATNGKAPYK 579 (910)
T ss_pred EECCCCCCCEECCCCCCHHHC-----------CCCCCCCCCCCEEECCCCHH-------HEEHHHHHHHEEEECCCCCEE
T ss_conf 644755321002798631111-----------46621168432323376522-------102366221224521788841
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCCCCCCHHHHH
Q ss_conf 22235532322433235870013062022102567775441104897064047421000000122221001234633566
Q gi|254780802|r 575 RLFTQGMVVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTAR 654 (869)
Q Consensus 575 ~l~~~G~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~~yGaD~lR 654 (869)
++++||+|+|+ +|+|||||+||||+|.++|++||||+||
T Consensus 580 ~v~~hG~vlD~-----------------------------------------~G~KMSKS~GNvidP~~ii~~yGAD~lR 618 (910)
T PRK05743 580 QVLTHGFTVDG-----------------------------------------KGRKMSKSLGNVIDPQDVIKKYGADILR 618 (910)
T ss_pred EEEECCEEECC-----------------------------------------CCCCCCCCCCCCCCHHHHHHHCCCHHHH
T ss_conf 79861328989-----------------------------------------8888888787779989998654940999
Q ss_pred HHHHHCCCCCCCCCCCCCCHH---HHHHHHHHHHHHHHHHHCCCCCC--------CCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 655301332111113432101---14556778899999763024667--------8975699999999999999999881
Q gi|254780802|r 655 LFVLSDSPPDRDIIWSNKGVD---STYQFIQQIWRLIYNAKDELQTS--------STKKDISLISKSTKFLERIEENYQN 723 (869)
Q Consensus 655 l~~~~~~~~~~d~~~s~~~i~---~~~rfl~kl~~l~~~~~~~~~~~--------~~~~D~~ils~~~~~i~~v~~~~e~ 723 (869)
||+++ ++...|+.+|++.+. ..+|.|.+++++++.+.+.+.+. ...+|+|||++++.++++|+++|++
T Consensus 619 lwvas-~d~~~d~~~s~~il~~~~~~yrKi~Nt~rf~l~nl~~f~~~~~~~~~~~l~~lD~wiL~~l~~~~~~v~~~~~~ 697 (910)
T PRK05743 619 LWVAS-TDYSGDVRISDEILKQVAESYRRIRNTLRFLLGNLNDFDPAKDAVPYEELVELDRWALHRLNELQEEIIEAYEN 697 (910)
T ss_pred HHHHH-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99872-57434545568999889999999999999998632168832245892446576899999999999999999863
Q ss_pred CCHHHHHHHHHHHH-HHHHHHHHHHCCCCCCCC---------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC-CCCCE
Q ss_conf 68899999999999-999999986211000221---------79999999999999972234389999999828-99835
Q gi|254780802|r 724 LSFNKAVANIHELV-NVISKPLMEIAKKKSNAD---------RISTIRYILEKLIIMMSPMIPHLAEECWQLLG-NAGLV 792 (869)
Q Consensus 724 ~~f~~ai~~i~~f~-n~ls~~y~~~~k~~~~~~---------~~~~l~~vl~~l~~lLaPi~PhiaEEiw~~Lg-~~~~i 792 (869)
|+|++|++.+++|+ ++||+||+++.|+|.+++ .+.+|+++|+.+++|||||+||+|||+|+.|+ ..+||
T Consensus 698 y~f~~a~~~l~~F~~~dls~~Y~~~~Kdrly~~~~~~~~R~s~q~~L~~vl~~l~~llaPi~Pf~~EEiw~~l~~~~~SV 777 (910)
T PRK05743 698 YDFHKVYQALHNFCSVDLSSFYLDIIKDRLYTDKADSLARRSAQTALYHILEALVRWLAPILSFTAEEIWQYLPEREESV 777 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCE
T ss_conf 55889999999885756879998761244414789849999999999999999999998664699999997388999976
Q ss_pred EECCCCCCC
Q ss_conf 517886659
Q gi|254780802|r 793 AQQKWPKLD 801 (869)
Q Consensus 793 ~~~~WP~~d 801 (869)
|+++||+..
T Consensus 778 ~l~~wp~~~ 786 (910)
T PRK05743 778 FLEEWPEGP 786 (910)
T ss_pred ECCCCCCCC
T ss_conf 826799996
No 10
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=0 Score=1233.33 Aligned_cols=640 Identities=28% Similarity=0.484 Sum_probs=516.3
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCC-CCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 8765689998999999998598036-767888838998077897898740047797789999997771898556768814
Q gi|254780802|r 3 TRSYSPQETDSIWQSAWYDSNIFKA-ENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWD 81 (869)
Q Consensus 3 ~~~y~~~~iE~kwq~~W~~~~~fe~-~~~~~~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d 81 (869)
.+.|||++||+|||++|+++++|++ .+++++|+|+|++|||||||.||+||++|+|++|+++||+||+||||+||||||
T Consensus 6 ~~~y~~~~iE~k~~~~W~~~~~f~~~~~~~~~~~f~i~~ppPy~nG~lHiGH~~~~t~~D~~~Ry~rm~G~~Vl~~~G~D 85 (809)
T PRK13208 6 PKKYDPKEIEEKWQKIWEEEGIYKFDDEDEKKPVYIIDTPPPTVSGKLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWD 85 (809)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 57899499999999999867993678666899969990699998897213166889999999999981799669988458
Q ss_pred CCCHHHHHHHHHH-CC------------CHHHHHHHHHHHHHHHHHHCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCC
Q ss_conf 0205899999980-99------------9999999999999999998191766469821477359999999999999889
Q gi|254780802|r 82 AFGMPAENAAREH-NV------------HPKMWTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHN 148 (869)
Q Consensus 82 ~~GlPie~~~~e~-~~------------~~~~~~~~~i~~~k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kG 148 (869)
|||||||.++++. ++ .|++|++++++.|++||+|||+|+||+|+|.|+||.|++++||+|.+|+++|
T Consensus 86 ~~GlPie~~vek~~~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~y~~~v~~~f~~L~~~G 165 (809)
T PRK13208 86 DNGLPTERKVEKYYGIRAHDISREEFIELCRELTDEDEEKFRELWRRLGLSVDWSLEYRTISPEYRRISQKSFLDLYKKG 165 (809)
T ss_pred CCCHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 56689999999971999012799999999999999999999999998286140689707588789999999999999779
Q ss_pred CEEECCEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 63412213321477676778989843853345643223347523343034445443210022554322222100014557
Q gi|254780802|r 149 VIVRKTAQVNWDPVEQTVLANEQVINGRGWRSDAPVEQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRS 228 (869)
Q Consensus 149 liyrg~~pV~wcp~~~t~la~~Ev~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~i~~~ 228 (869)
|||||.+||+|||+|+|+||||||++++.. .+.
T Consensus 166 liy~g~~~v~wcp~~~T~ls~~Ev~~~~~~----------~~~------------------------------------- 198 (809)
T PRK13208 166 LIYRAEAPVLWCPRCRTAIAQAEVEYKERE----------GKL------------------------------------- 198 (809)
T ss_pred CEEEECCCCCCCCCCCCCHHHHHHHCCCCC----------CEE-------------------------------------
T ss_conf 978742103677665755565676425677----------603-------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 67545355567777775136532001344432320033024432034541314589998865311112455543025532
Q gi|254780802|r 229 EGMEIRWEIVSNTIDQIEEILVYTTRPETIFGASFIAIAVDHSISEKLSCDNTDIKEFCDEEKQKGTSLSVLDKTEKKGI 308 (869)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~l~~~TtrPeTl~g~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (869)
..++|++.+ .+.++++||||||||+|+++++++|+.+.. ..
T Consensus 199 --~~ikf~~~~----~~~~l~iaTTrPeTl~~~~av~v~P~d~ry---------------------------------~~ 239 (809)
T PRK13208 199 --NYIKFPVKE----GGEKITIATTRPELLPACVAVVVHPDDERY---------------------------------KH 239 (809)
T ss_pred --EEEEEEECC----CCCEEEEEECCHHHHHHHHCEEECCCCHHH---------------------------------HH
T ss_conf --999888517----986489995782376530204106885788---------------------------------98
Q ss_pred CCCCEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCC
Q ss_conf 37861037777741577631123454533322211134672110122103544321016776555422211210123344
Q gi|254780802|r 309 YTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIFGCPFADQRDMDFAKKYGLPIIPIMKRSINHSQDIEEGKAFSGDGIM 388 (869)
Q Consensus 309 ~~G~~~~~P~~~~~~ipv~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~k~glpi~~v~~~~~~~~~~~~~~~~~~~~~~~ 388 (869)
|+|+.+++|++++ .+||++++||++++|||+||++|+||++||++++++|||++.+++..|.....
T Consensus 240 l~G~~~~~P~~~~-~vpi~~~~~V~~~~GTG~V~~~p~~d~~D~~~~~~~~l~~~~~id~~G~~~~~------------- 305 (809)
T PRK13208 240 LVGKTAIVPLFGV-EVPILADPLVDPDFGTGAVMICTFGDQTDVTWWRELNLPLRIIIDEDGRITEA------------- 305 (809)
T ss_pred HCCCEEECCCCCC-EEEEEEEEEEECCCCCCCEEECCCCCCHHHEEHHHCCCCCEEEECCCCCCCCC-------------
T ss_conf 4598897168896-66786346650467878356678987303302443055630003778724246-------------
Q ss_pred CCCHHHCCCCHHHHHHHHHHHHHHHCCC-----------C------------------------------------CCH-
Q ss_conf 5830001356466548889999740467-----------7------------------------------------520-
Q gi|254780802|r 389 INSSFLDGMTNTEALQAVMSHLEKQNIK-----------N------------------------------------SPI- 420 (869)
Q Consensus 389 ~~~~~~~g~~~~~~~~~i~~~l~~~~~~-----------~------------------------------------~~~- 420 (869)
.+.+.|+.+.+|++++++.|++.+.. . .|.
T Consensus 306 --~~~~~G~~v~ea~~~ii~~L~~~g~l~~~~~~~h~~p~c~R~~~pi~~~~~~QWfi~~~~~k~~~~~~~~~i~~~P~~ 383 (809)
T PRK13208 306 --AGKYAGLTIKEARKKIIEDLKEEGLLVKQEPITHNVKVCERCKTPIEILVTRQWFIKVLDLKEELLERAKEIEWYPEH 383 (809)
T ss_pred --CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCEEEECHHHHHHHHHHHHHHHHHHHCCEECCCH
T ss_conf --634599689998999999999689941344554556411478972168752456653277788888764226005840
Q ss_pred HHHHHHH---HCC-CCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 2221110---001-112211232222234223334684634742000111001000224542100245642110136764
Q gi|254780802|r 421 GKRKINF---RLR-DWCISRQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTWKKIFCVKCGSE 496 (869)
Q Consensus 421 ~~~~~~~---~l~-DW~ISRqr~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~ 496 (869)
.+++... .++ ||||||||+||+|||||+|++|+...... .+...+ .+.++..+.+......|..++..
T Consensus 384 ~~~r~~~wl~~~~~DW~iSRqr~WGtpiPiw~~~~~~~~~~~~------~~~~~~--l~~d~~~~~~~~~~~~~~~~~~~ 455 (809)
T PRK13208 384 MRKRLENWIEGLNWDWCISRQRYFGTPIPVWYCKDCGGEGKPI------LADEED--LPVDPTKDPPPGYSECCRCGPGE 455 (809)
T ss_pred HHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEECCCCCCCCCC------CCCHHH--CCCCCHHCCCCHHHCCCCCCCCC
T ss_conf 8889999984256542000012358644247605778756401------487887--37781101741110246668766
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 43564323456664333223355565441013566411433440145554433202345553201347873223200222
Q gi|254780802|r 497 ALRETDTMDTFVDSSWYYMRYMTPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIGYIEIDEPFKRL 576 (869)
Q Consensus 497 ~~r~~dvld~w~dS~~~~~~~~~~~~~~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~g~~~~~~pf~~l 576 (869)
+.|++||||+|||||+.+.....+ +.+++.+++|||+|++++|.||+..|+++.-+.+. .+....||+++
T Consensus 456 ~~~e~dvlD~WfdS~~~p~~~~~~----~~~~~~f~~~~P~d~~~~G~Di~r~W~~~~l~~~~------~l~~~~Pfk~v 525 (809)
T PRK13208 456 FEPETDVMDTWADSSITPLIVTGW----LEDKELFEKLFPADLRPQGHDIIRTWLFYTILRAY------LLTGKLPWKNI 525 (809)
T ss_pred CEECCCCCCCEEECCCCHHHHCCC----CCCHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHH------HHCCCCCCHHC
T ss_conf 330476666465567788876056----32156675448852443405988739999999999------85388860201
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 23553232243323587001306202210256777544110489706404742100000012222100123463356665
Q gi|254780802|r 577 FTQGMVVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLF 656 (869)
Q Consensus 577 ~~~G~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~ 656 (869)
++||+|+++ +|+|||||+||||+|.++|++||||++|||
T Consensus 526 ~~~G~vld~-----------------------------------------~G~KMSKS~GNvi~p~eii~~yGADalR~~ 564 (809)
T PRK13208 526 MISGMVLDP-----------------------------------------DGKKMSKSKGNVVDPEELLEKYGADAVRYW 564 (809)
T ss_pred CCCCEEECC-----------------------------------------CCCCCCCCCCCCCCHHHHHHHCCCHHHHHH
T ss_conf 114605546-----------------------------------------774347778896897898653380999999
Q ss_pred HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC--------CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 5301332111113432101145567788999997630246--------67897569999999999999999988168899
Q gi|254780802|r 657 VLSDSPPDRDIIWSNKGVDSTYQFIQQIWRLIYNAKDELQ--------TSSTKKDISLISKSTKFLERIEENYQNLSFNK 728 (869)
Q Consensus 657 ~~~~~~~~~d~~~s~~~i~~~~rfl~kl~~l~~~~~~~~~--------~~~~~~D~~ils~~~~~i~~v~~~~e~~~f~~ 728 (869)
++ .+++++|++|+++++++.++|++++||.......... ......|+||++++++++++++++|++|+|++
T Consensus 565 la-~~~~~~d~~~~~~~~~~~~~~~~klwN~~rf~~~~~~~~~~~~~~~~~~~lDrwils~l~~~i~~v~~~~e~y~f~~ 643 (809)
T PRK13208 565 AA-NSRLGSDTRFSEKQIKIGKRLLTKLWNASRFVSSFIEPEKIEEKAPILEPVDRWILAKLNRVVKKATEALENYDFAE 643 (809)
T ss_pred HH-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 96-18944465668999999999999999999999970354566676322578899999999999999999997358999
Q ss_pred HHHHHHHHH-HHHHHHHHHHCCCCCCCC--------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEECCCCC
Q ss_conf 999999999-999999986211000221--------79999999999999972234389999999828998355178866
Q gi|254780802|r 729 AVANIHELV-NVISKPLMEIAKKKSNAD--------RISTIRYILEKLIIMMSPMIPHLAEECWQLLGNAGLVAQQKWPK 799 (869)
Q Consensus 729 ai~~i~~f~-n~ls~~y~~~~k~~~~~~--------~~~~l~~vl~~l~~lLaPi~PhiaEEiw~~Lg~~~~i~~~~WP~ 799 (869)
|++.+++|+ ++||+||+++.|+|.+.. ...||+++|+.+++|||||+||+|||||+.|++++|||+++||+
T Consensus 644 a~~~i~~F~~~~l~~~Yie~~k~R~~~~~~~~~~~~a~~tL~~vL~~~l~llaP~~PfiaEeiw~~L~~~~sV~~~~wP~ 723 (809)
T PRK13208 644 ALEEIESFFWHDFCDNYLELVKSRAYGEDGSEEQKSAIYTLYTVLRTLLKLLAPFMPFITEEIYSWLYGGSSVHRASWPE 723 (809)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCC
T ss_conf 99999999999878999999889871488818899999999999999999998788999999998689998188579999
Q ss_pred CCHHH
Q ss_conf 59678
Q gi|254780802|r 800 LDPIL 804 (869)
Q Consensus 800 ~d~~~ 804 (869)
+++..
T Consensus 724 ~~~~~ 728 (809)
T PRK13208 724 VDELL 728 (809)
T ss_pred CCCCC
T ss_conf 98200
No 11
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=0 Score=1233.47 Aligned_cols=693 Identities=25% Similarity=0.414 Sum_probs=548.5
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCC---CCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 765689998999999998598036---76788883899807789789874004779778999999777189855676881
Q gi|254780802|r 4 RSYSPQETDSIWQSAWYDSNIFKA---ENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGW 80 (869)
Q Consensus 4 ~~y~~~~iE~kwq~~W~~~~~fe~---~~~~~~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~ 80 (869)
+++|+.++|++||++|+++++|+. +.+.++++|+++||||||||.+|+|||+|+|+||+|.||++|+||+|.|+|||
T Consensus 16 mr~~l~~~E~~i~~~W~e~~iy~k~~~~~~~g~~~FvfhDGPPyANG~iHiGHalnKilKDiI~Ry~~m~G~~v~~~pGW 95 (933)
T COG0060 16 MRANLPKKEPKILKFWEENDIYEKIREERNKGKPKFVLHDGPPYANGNIHIGHALNKILKDIIVRYKTMQGYDVPYVPGW 95 (933)
T ss_pred CCCCHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 66992341889998888736999999997389980897479997789822656677666663433320458858988997
Q ss_pred CCCCHHHHHHHHHH----------------CCCHHHHHHHHHHHHHHHHHHCCCEEECCCCEECCCHHHHHHHHHHHHHH
Q ss_conf 40205899999980----------------99999999999999999999819176646982147735999999999999
Q gi|254780802|r 81 DAFGMPAENAAREH----------------NVHPKMWTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDF 144 (869)
Q Consensus 81 d~~GlPie~~~~e~----------------~~~~~~~~~~~i~~~k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L 144 (869)
||||||||.+++++ +..||++|.++++.|+++|+|||+|+||+++|.|||++|++.++|.|.+|
T Consensus 96 DcHGLPIE~~vek~lg~~k~~i~~~~~~efr~~Cr~~a~~~v~~q~~~f~RLGv~~Dw~npY~Tmd~~ye~~~~~~f~~~ 175 (933)
T COG0060 96 DCHGLPIELKVEKKLGIGKKDIESFGVEEFREKCREFALEQVDEQKEQFKRLGVWGDWENPYKTMDPSYEESVWWAFKEL 175 (933)
T ss_pred CCCCCHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCEECCCHHHHHHHHHHHHHH
T ss_conf 67882288999998287631143348999999999999999999999987636763268980327889999999999999
Q ss_pred HHCCCEEECCEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 98896341221332147767677898984385334564322334752334303444544321002255432222210001
Q gi|254780802|r 145 MKHNVIVRKTAQVNWDPVEQTVLANEQVINGRGWRSDAPVEQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNW 224 (869)
Q Consensus 145 ~~kGliyrg~~pV~wcp~~~t~la~~Ev~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~ 224 (869)
++|||||||.+||+|||+|+||||+|||++++ ++.|++|
T Consensus 176 ~~kGllyrg~Kpv~wsp~c~TaLAeaEvey~d----------~~dpSIy------------------------------- 214 (933)
T COG0060 176 YEKGLLYRGYKPVPWSPRCETALAEAEVEYGD----------VKDPSIY------------------------------- 214 (933)
T ss_pred HHCCCEECCCEEEEECCCCCCCHHHHHHCCCC----------CCCCEEE-------------------------------
T ss_conf 97797522770012268777600366640256----------6896289-------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCHHHHHCCH-HH-HHHHHHHHHHHHHH-HHHH
Q ss_conf 455767545355567777775136532001344432320033024432034541314-58-99988653111124-5554
Q gi|254780802|r 225 IGRSEGMEIRWEIVSNTIDQIEEILVYTTRPETIFGASFIAIAVDHSISEKLSCDNT-DI-KEFCDEEKQKGTSL-SVLD 301 (869)
Q Consensus 225 i~~~~~~~~~~~~~~~~~~~~~~l~~~TtrPeTl~g~~~i~v~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~-~~~~ 301 (869)
++|++.+...+.+.+++|||||||||++|.+++++|+.+|+........ .+ ...++......... ..+.
T Consensus 215 --------V~F~v~~~~~~~~~~lviWTTTPWTLPaN~aiav~pd~~Y~lv~~~~~~~IlA~~lve~~~~~~~~~~~~vl 286 (933)
T COG0060 215 --------VKFPVKDEGLDENAYLVIWTTTPWTLPANLAIAVHPDLDYVLVEVNGEKLILAKALVESVAKKAGVEDYEVL 286 (933)
T ss_pred --------EEEEECCCCCCCCCEEEEEECCCCCCHHCCEEEECCCCCEEEEEECCEEEEEHHHHHHHHHHHCCCCCEEEE
T ss_conf --------997733578877707999948987731004367679851699997888999829989999987098420776
Q ss_pred HHCCCCCCCCCEECCCCCC---CEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCC-CCCCCCCCCCCCCCCCCC
Q ss_conf 3025532378610377777---415776311234545333222111346721101221035-443210167765554222
Q gi|254780802|r 302 KTEKKGIYTGIHVKHPLNP---NVVIPVYIANFVFMNYGTGAIFGCPFADQRDMDFAKKYG-LPIIPIMKRSINHSQDIE 377 (869)
Q Consensus 302 ~~~~~~~~~G~~~~~P~~~---~~~ipv~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~k~g-lpi~~v~~~~~~~~~~~~ 377 (869)
.+.++.+|.|..|.||+.. +...||+.|+||+++.|||+||+|||||++||.+++++| ||+..++|..|.++.++.
T Consensus 287 ~~~kG~~Leg~~y~hPf~~~~~~~~~~vi~gd~VT~d~GTG~VHtAPghGeeDy~vg~~~g~l~v~~pVD~~G~yt~~~~ 366 (933)
T COG0060 287 ETFKGSELEGLRYEHPFYDFVYDRAFPVILGDHVTLDDGTGLVHTAPGHGEEDYEVGKKYGLLEVLNPVDDNGRYTEEAP 366 (933)
T ss_pred EEEEHHHHCCCEEECCCCCCCCCCEEEEEECCEEECCCCCCCEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCH
T ss_conf 77553662878764887654545604688527672279841056389898789999998299676466688855666543
Q ss_pred C--H-----------------HHCCCCCCCCCCHHHCCCCH---------------HHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 1--1-----------------21012334458300013564---------------665488899997404677520222
Q gi|254780802|r 378 E--G-----------------KAFSGDGIMINSSFLDGMTN---------------TEALQAVMSHLEKQNIKNSPIGKR 423 (869)
Q Consensus 378 ~--~-----------------~~~~~~~~~~~~~~~~g~~~---------------~~~~~~i~~~l~~~~~~~~~~~~~ 423 (869)
. | +.+...+.+.|+++++|++. ++.++.+++.+.+-.+.+.+ |+.
T Consensus 367 ~~~G~~v~dAn~~Ii~~Lk~~g~Ll~~e~i~HsYPhcWR~ktPlIyRAt~QWFi~v~~~r~~~l~~i~~v~w~P~~-~~~ 445 (933)
T COG0060 367 KYEGLFVKDANKKIIEDLKEKGNLLKSEKIEHSYPHCWRTKTPLIYRATPQWFVSVDKLRDKMLKEINKVNWVPDW-GKN 445 (933)
T ss_pred HHCCCEECCCCHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCEEEEEECCHHEEEHHHHHHHHHHHHHCCEEECHH-HHH
T ss_conf 2178240007899999998679531533577579866678980698505203367888999999998555688715-789
Q ss_pred HHHHH---CCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHH--HHHCCCCCCCC
Q ss_conf 11100---01112211232222234223334684634742000111001000224542100245642--11013676443
Q gi|254780802|r 424 KINFR---LRDWCISRQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTWKK--IFCVKCGSEAL 498 (869)
Q Consensus 424 ~~~~~---l~DW~ISRqr~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~ 498 (869)
+...+ .+||||||||+||+|||||+|++||.+.+..+|+.....+... ..|...+..+.-.+ ..|+.||.++.
T Consensus 446 R~~~mve~r~DW~ISRQR~WGvPiPi~~~~~~g~~~~~~~El~e~~~~~~~--~~g~~~w~~~~idel~~~~~~~g~~~~ 523 (933)
T COG0060 446 RFGNMVENRPDWCISRQRYWGVPIPVWYCKETGEILVITEELEELVGQLVE--EKGIDDWHRPDIDELLPPCPEDGKEYR 523 (933)
T ss_pred HHHHHHCCCCCCEEECCCCCCCCEEEEEECCCCCEECCHHHHHHHHHHHHH--HCCCHHHHCCCHHHHCCCCCCCCCEEE
T ss_conf 999997189864365166678853379988999742328999999987743--217266515634764578888765059
Q ss_pred CCCCCCCCCCCCC-CCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCC-CCCCCCCC
Q ss_conf 5643234566643-332233555654410135664114334401455544332023455532013478732-23200222
Q gi|254780802|r 499 RETDTMDTFVDSS-WYYMRYMTPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIGYIE-IDEPFKRL 576 (869)
Q Consensus 499 r~~dvld~w~dS~-~~~~~~~~~~~~~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~g~~~-~~~pf~~l 576 (869)
|++||||+||||| .+++ ..+ |+..+.+..++ +|+|+||+||+ |+|+++++.++++. ...||+++
T Consensus 524 rv~DvlDVWFDSGs~~~a---~~~---~~~~~~~~~~~-aD~~lEGsDQ~-------RGWF~Ssl~~s~a~~~~aPYk~v 589 (933)
T COG0060 524 RVPDVLDVWFDSGSTPYA---VLH---PRENLKFPALF-ADFYLEGSDQT-------RGWFYSSLLTSTALFGRAPYKNV 589 (933)
T ss_pred ECCCCEEEEECCCCCCCC---CCC---CCCCCCCCCCC-CCEEEEECCCC-------CHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 657546888737897111---107---75444676555-75799706655-------22689999999997288507877
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 23553232243323587001306202210256777544110489706404742100000012222100123463356665
Q gi|254780802|r 577 FTQGMVVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLF 656 (869)
Q Consensus 577 ~~~G~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~ 656 (869)
++||+++|+ +|+|||||+||+|+|.+++++||||+||||
T Consensus 590 ltHGfvlDe-----------------------------------------~GrKMSKSlGN~v~P~~V~~~yGADiLRLw 628 (933)
T COG0060 590 LTHGFVLDE-----------------------------------------KGRKMSKSLGNVVDPQDVIDKYGADILRLW 628 (933)
T ss_pred HHCCCEECC-----------------------------------------CCCCCCCCCCCCCCHHHHHHHHCCHHEEEE
T ss_conf 632617888-----------------------------------------888765557881898999876276340466
Q ss_pred HHHCCCCCCCCCCCCCCHHHHHHHHHHHHH---HHHHHHCCCCCCC--------CHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 530133211111343210114556778899---9997630246678--------97569999999999999999988168
Q gi|254780802|r 657 VLSDSPPDRDIIWSNKGVDSTYQFIQQIWR---LIYNAKDELQTSS--------TKKDISLISKSTKFLERIEENYQNLS 725 (869)
Q Consensus 657 ~~~~~~~~~d~~~s~~~i~~~~rfl~kl~~---l~~~~~~~~~~~~--------~~~D~~ils~~~~~i~~v~~~~e~~~ 725 (869)
+++. +.+.|+.+|+++++.+.+.++++|| ++..+.+.+++.. ..+|+||+++++.+++.++++|++|+
T Consensus 629 v~ss-d~~~dl~~s~~il~~~~~~~r~irNt~rF~l~nl~~fdp~~~~~~~~~~~~~Drwil~rl~~l~~~v~eaye~y~ 707 (933)
T COG0060 629 VASS-DYWEDLRFSDEILKQVREVYRKIRNTYRFLLGNLDDFDPKKDAVLPEELRELDRWILSRLNSLVKEVREAYENYD 707 (933)
T ss_pred EEEC-CCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 5615-823032027889999999999999999999885058994213351444232179999999999999999998467
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHCCCCCCCC---------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC---CCE
Q ss_conf 899999999999-999999986211000221---------7999999999999997223438999999982899---835
Q gi|254780802|r 726 FNKAVANIHELV-NVISKPLMEIAKKKSNAD---------RISTIRYILEKLIIMMSPMIPHLAEECWQLLGNA---GLV 792 (869)
Q Consensus 726 f~~ai~~i~~f~-n~ls~~y~~~~k~~~~~~---------~~~~l~~vl~~l~~lLaPi~PhiaEEiw~~Lg~~---~~i 792 (869)
|+++++.+++|+ .+||+||++++|+|.+++ .+++|+++|.+++++||||+||+|||+|+.|.+. +||
T Consensus 708 f~~v~~~l~~F~~~dLS~~Yld~~kdr~y~~~~~s~~rraa~~~Ly~il~~l~~~lAPilPftaEeiw~~l~~~~~~eSV 787 (933)
T COG0060 708 FHKVVRALMNFVSEDLSNWYLDIIKDRLYTEAADSPDRRAAQTTLYHILKALVRLLAPILPFTAEEIWQNLPGERKEESV 787 (933)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEE
T ss_conf 99999999999885665889888788764047999889999999999999999997101036599999747667887536
Q ss_pred EECCCCCCCHHH
Q ss_conf 517886659678
Q gi|254780802|r 793 AQQKWPKLDPIL 804 (869)
Q Consensus 793 ~~~~WP~~d~~~ 804 (869)
|+++||+.++.+
T Consensus 788 hl~~~p~~~~~~ 799 (933)
T COG0060 788 HLEDWPEVDEEL 799 (933)
T ss_pred EECCCCCCCCCC
T ss_conf 703576554321
No 12
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=100.00 E-value=0 Score=1226.32 Aligned_cols=681 Identities=22% Similarity=0.322 Sum_probs=511.1
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCC--CCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 765689998999999998598036--767888838998077897898740047797789999997771898556768814
Q gi|254780802|r 4 RSYSPQETDSIWQSAWYDSNIFKA--ENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWD 81 (869)
Q Consensus 4 ~~y~~~~iE~kwq~~W~~~~~fe~--~~~~~~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d 81 (869)
+++|+.++|++||++|+++++|+. +.++++|+|+|+||||||||.|||||++|||++|+++||+||+||+|+||||||
T Consensus 22 ~r~nl~~~E~~~~~~W~~~~~y~~~~~~~~~~~~f~~~dGPPyanG~lH~GHaln~tikDii~Rykrm~G~~V~~~~GwD 101 (966)
T PRK13804 22 MRAGLPQKEPEIQARWEEIDLYKKLREQAKGRPKFVLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGWD 101 (966)
T ss_pred CCCCCHHHCHHHHHHHHHCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 88881232699999987548999999856899976995799999998612255666899999999874899668999768
Q ss_pred CCCHHHHHHHHHH----C------------CCHHHHHHHHHHHHHHHHHHCCCEEECCCCEECCCHHHHHHHHHHHHHHH
Q ss_conf 0205899999980----9------------99999999999999999998191766469821477359999999999999
Q gi|254780802|r 82 AFGMPAENAAREH----N------------VHPKMWTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFM 145 (869)
Q Consensus 82 ~~GlPie~~~~e~----~------------~~~~~~~~~~i~~~k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~ 145 (869)
|||||||.++++. + ..|++|+.++++.|++||+|||+|+||+|+|.||||.|++++||+|.+|+
T Consensus 102 ~hGLPiE~~vek~l~~~~~~~~~~~~~~f~~~cr~~a~~~i~~~~~q~~rlG~~~DW~~~y~T~dp~y~~~~~~~F~~l~ 181 (966)
T PRK13804 102 CHGLPIEWKIEEKYRAKGKNKDEVPLNEFRKECREYALSWIDVQREEFKRLGVIGDWENPYTTMDFHAEARIAREFMKFA 181 (966)
T ss_pred CCCHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 88789999999977652898233899999999999999999999999998292022589842289899999999999999
Q ss_pred HCCCEEECCEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 88963412213321477676778989843853345643223347523343034445443210022554322222100014
Q gi|254780802|r 146 KHNVIVRKTAQVNWDPVEQTVLANEQVINGRGWRSDAPVEQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWI 225 (869)
Q Consensus 146 ~kGliyrg~~pV~wcp~~~t~la~~Ev~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~i 225 (869)
++||||||.+||+|||+|+|+|||+||++.+ +..+.+|
T Consensus 182 ekGliYr~~~pV~Wcp~~~TaLA~~EVey~d----------~~s~s~~-------------------------------- 219 (966)
T PRK13804 182 AKGQLYRGSKPVMWSVVERTALAEAEVEYHD----------HESDTIW-------------------------------- 219 (966)
T ss_pred HCCCEEECCCCCCCCCCCCCCHHHHHHCCCC----------EECCEEE--------------------------------
T ss_conf 8799884385147689888662367547667----------8666699--------------------------------
Q ss_pred CCCCCCCCCCCCCCCC--CCCCCEEEEEEECCCCCCCCCEEEEECCCCCCHHHHHC-----------CHHH-HHHHHHHH
Q ss_conf 5576754535556777--77751365320013444323200330244320345413-----------1458-99988653
Q gi|254780802|r 226 GRSEGMEIRWEIVSNT--IDQIEEILVYTTRPETIFGASFIAIAVDHSISEKLSCD-----------NTDI-KEFCDEEK 291 (869)
Q Consensus 226 ~~~~~~~~~~~~~~~~--~~~~~~l~~~TtrPeTl~g~~~i~v~~~~~~~~~~~~~-----------~~~~-~~~~~~~~ 291 (869)
++|++.+.. ...+.++++||||||||+|+++++++|+.+|+...... ...+ ...++...
T Consensus 220 -------v~f~v~~~~~~~~~~~~l~iwTTtPwTl~~n~avav~p~~~Y~~~~~~~~~~~~~~~~~~~~i~a~~l~e~~~ 292 (966)
T PRK13804 220 -------VKFPVKDGKGILLTGASVVIWTTTPWTIPANRAISYSPDIEYGLYEVTGAENDNWAKPGEKLVVADALAESVA 292 (966)
T ss_pred -------EEEEECCCCCCCCCCCCEEEEECCCCHHHCCCCEEECCCCCEEEEEECCCCCCCCCCCCCEEEEHHHHHHHHH
T ss_conf -------9987346620004787067750785022021020245776437899504542112445515665477899999
Q ss_pred HH-HHHHHHHHHHCCCCCCCCCEECCCCCC-----CEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCC-
Q ss_conf 11-112455543025532378610377777-----41577631123454533322211134672110122103544321-
Q gi|254780802|r 292 QK-GTSLSVLDKTEKKGIYTGIHVKHPLNP-----NVVIPVYIANFVFMNYGTGAIFGCPFADQRDMDFAKKYGLPIIP- 364 (869)
Q Consensus 292 ~~-~~~~~~~~~~~~~~~~~G~~~~~P~~~-----~~~ipv~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~k~glpi~~- 364 (869)
.. +..........++..|.|..+.||+.+ +..+||+.++||++++|||+||+|||||++||+++++|||++..
T Consensus 293 ~~~~~~~~~~~~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~d~V~~~~GTG~Vh~aPaHg~~Dy~~~~k~~L~~~~~ 372 (966)
T PRK13804 293 KKAGVESFERVRDVKADDLEAIVCAHPLKGLDGGYEFEVPVLDGDHVTDDAGTGFVHTAPGHGREDFEVWMKYGRELEVR 372 (966)
T ss_pred HHHCCCCEEEEEEECCCEECCCEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCC
T ss_conf 87376422787300150004766526665556666715789816831567785637755778878899999839873103
Q ss_pred -----CCCCCCCCCCCCCCH---------------------------HHCCCCCCCCCCHHHCCCCHH------------
Q ss_conf -----016776555422211---------------------------210123344583000135646------------
Q gi|254780802|r 365 -----IMKRSINHSQDIEEG---------------------------KAFSGDGIMINSSFLDGMTNT------------ 400 (869)
Q Consensus 365 -----v~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~g~~~~------------ 400 (869)
++++.+.++.....- +.+.+.+.+.|+.+++|++.+
T Consensus 373 ~~i~~~vd~~G~~~~~~~~~~g~~v~~~~G~~~~~a~~~Ii~~L~e~g~L~~~~~~~HsyP~~wR~~~Pvi~r~t~QWFi 452 (966)
T PRK13804 373 TAIPFTVDEDGFYTEDAPGFGGARVIDDKGKKYGDANKAVIEALIEAGLLLARGRLKHSYPHSWRSKKPVIFRNTPQWFI 452 (966)
T ss_pred CCCCCCCCCCCEECCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEE
T ss_conf 57787568876065456001255421346873656279999999967996455641247763456786279960461478
Q ss_pred ----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHC---CCCCCCCCCCCCCCCCCCCCCCCCCEECCCC-----CC
Q ss_conf ----------65488899997404677520222111000---1112211232222234223334684634742-----00
Q gi|254780802|r 401 ----------EALQAVMSHLEKQNIKNSPIGKRKINFRL---RDWCISRQRSWGCPIPVIHCQKCGIVELPKE-----DL 462 (869)
Q Consensus 401 ----------~~~~~i~~~l~~~~~~~~~~~~~~~~~~l---~DW~ISRqr~WG~piPv~~~~~~~~~~~~~~-----~l 462 (869)
+.++.+++.+++..+.+. .++++...++ +|||||||||||+|||||||++|..+..++. ++
T Consensus 453 ~~~~~~~~~~~lr~~~l~~i~~v~~~P~-~~~~r~~~~l~~~~DW~ISRQRyWG~PIPi~~~e~~~~~~~~~~~~~i~~~ 531 (966)
T PRK13804 453 SMDKDLGDGGTLRSRALDAIKKTRFVPA-AGQNRLRGMIEDRPDWVISRQRAWGVPIPVFVDENGEILMDDEVNERIADA 531 (966)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCCCH-HHHHHHHHCCCCCCCCEEECCCCCCCCCCEEECCCCCCCCCHHHHHHHHHH
T ss_conf 7353432138999999987654350653-434455512157867666311345887517983799744575677899999
Q ss_pred CHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCHHHHHHHCCCHHHH
Q ss_conf 0111001000224542100245642110136764435643234566643--33223355565441013566411433440
Q gi|254780802|r 463 PVQLPEDLDFTLPGNPLENHPTWKKIFCVKCGSEALRETDTMDTFVDSS--WYYMRYMTPHAKDPINKELVRQWFPVDQY 540 (869)
Q Consensus 463 ~v~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~dvld~w~dS~--~~~~~~~~~~~~~~~~~e~~~~~~P~D~~ 540 (869)
......+.|+.. .....-..+..++..+.|++||||+||||| |++.. ....+..+|+|+|
T Consensus 532 ~~~~g~d~w~~~-------~~~~~~~~~~~~~~~~~r~~DvlD~WfdSgss~~~~~-----------~~~~~~~~PaD~y 593 (966)
T PRK13804 532 FEEEGADAWFAE-------GAKERFLGGFHPGEEWTKVTDILDVWFDSGSTHAFVL-----------EDRPDLPWPADLY 593 (966)
T ss_pred HHHHCCCCCCCC-------CHHHHCCCCCCCHHHHEECCCHHHHHHHCCCCCCCCC-----------CCHHHCCCCCCEE
T ss_conf 876187633345-------7476558887874550741311446651577532011-----------5854458974168
Q ss_pred CCCCCCCCCCCHHHHHHH-HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHCCCCCCCCCCCEECC
Q ss_conf 145554433202345553-2013478732232002222355323224332358700130620221025677754411048
Q gi|254780802|r 541 IGGIEHAVLHLLYARFFA-HILKKIGYIEIDEPFKRLFTQGMVVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSD 619 (869)
Q Consensus 541 i~g~d~~~~~~~~~r~~~-~~l~~~g~~~~~~pf~~l~~~G~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 619 (869)
++|.||. |+|+ ++|.....+...+||+++++||+|+|+
T Consensus 594 ~eG~Dq~-------rgWF~s~l~~s~~~~~~~Pfk~v~~hG~VlDe---------------------------------- 632 (966)
T PRK13804 594 LEGSDQH-------RGWFHSSLLESCGTRGRAPYKAVLTHGFTLDE---------------------------------- 632 (966)
T ss_pred ECCCCHH-------HHHHHHHHHHHHCCCCCCCCCCEEECCEEECC----------------------------------
T ss_conf 6254188-------86999999874220688774510341168988----------------------------------
Q ss_pred CCEEEECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHH---HHHHCCCC
Q ss_conf 970640474210000001222210012346335666553013321111134321011455677889999---97630246
Q gi|254780802|r 620 NSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDIIWSNKGVDSTYQFIQQIWRLI---YNAKDELQ 696 (869)
Q Consensus 620 ~~~~~~~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~~~~~~~~~~d~~~s~~~i~~~~rfl~kl~~l~---~~~~~~~~ 696 (869)
+|+|||||+||||+|.++|++||||+||||+++ ++.++|+.|+++.+....++++|+||.+ ..+.+.++
T Consensus 633 -------~G~KMSKS~GNvvdP~~ii~~yGADalRl~~as-~~~~~d~~~~~~~l~~~~~~~~ki~Nt~rf~l~nl~~f~ 704 (966)
T PRK13804 633 -------KGEKMSKSLGNVVDPQDVIKQSGADILRLWVAS-VDYQDDQRIGKEILKTNAETYRKLRNTLRWMLGTLAHFD 704 (966)
T ss_pred -------CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHH-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf -------988887878898998999987292188899984-775446345689999999999999999999998642798
Q ss_pred CC-------CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-HHHHHHHHHHCCCCCCCC---------HHHH
Q ss_conf 67-------897569999999999999999988168899999999999-999999986211000221---------7999
Q gi|254780802|r 697 TS-------STKKDISLISKSTKFLERIEENYQNLSFNKAVANIHELV-NVISKPLMEIAKKKSNAD---------RIST 759 (869)
Q Consensus 697 ~~-------~~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai~~i~~f~-n~ls~~y~~~~k~~~~~~---------~~~~ 759 (869)
+. ...+|+||+++++++++.|+++|++|+|+.|++.+++|+ ++||+||+++.|+|.+++ .+++
T Consensus 705 ~~~~~~~~~l~~~D~wil~~l~~~~~~v~~~~~~Y~f~~a~~~l~~F~~~dLs~~Yle~~Kdrly~~~~~~~~rrsaq~~ 784 (966)
T PRK13804 705 PGEAVAYADLPELERLMLHRLNELDATVRKAYEAFDFKTIYKALVNFMTVDLSAFYFDIRKDALYCDAPSSLRRKAALTV 784 (966)
T ss_pred CCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 32348922352878999999999999999985113599999999999998787999988437540579983999999999
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHC--CCCCCEEECCCCCCC
Q ss_conf 999999999997223438999999982--899835517886659
Q gi|254780802|r 760 IRYILEKLIIMMSPMIPHLAEECWQLL--GNAGLVAQQKWPKLD 801 (869)
Q Consensus 760 l~~vl~~l~~lLaPi~PhiaEEiw~~L--g~~~~i~~~~WP~~d 801 (869)
|+++|..++++||||+||+|||+|+.+ +.++|||++.||+.+
T Consensus 785 L~~il~~l~~llAPi~Pf~aEEiw~~~~~~~~~Sv~l~~~p~~~ 828 (966)
T PRK13804 785 IYEIFDRLTKWLAPILPFTTEEAWLYRYPEEEVSVHLEQFPETP 828 (966)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCC
T ss_conf 99999999999976728999999972557899876711489997
No 13
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=0 Score=1201.45 Aligned_cols=628 Identities=29% Similarity=0.513 Sum_probs=533.8
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 87656899989999999985980367678888389980778978987400477977899999977718985567688140
Q gi|254780802|r 3 TRSYSPQETDSIWQSAWYDSNIFKAENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDA 82 (869)
Q Consensus 3 ~~~y~~~~iE~kwq~~W~~~~~fe~~~~~~~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~ 82 (869)
.|.|||+++|+|||+.|++++.|++.++++.++|+|..||||++|.||||||+++|+.|+++||+||+||||||||||||
T Consensus 2 ~~~ydp~~iE~k~~~~W~~~~~f~~~~~~~~~~f~I~~PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~Dh 81 (877)
T COG0525 2 PKTYDPKEIEEKWYKKWEESGYFKPDPNEDKPPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDH 81 (877)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCC
T ss_conf 98778466508998778866985678877789727968979988865116545378999999998707973335798777
Q ss_pred CCHHHHHHHHHH----CC------------CHHHHHHHHHHHHHHHHHHCCCEEECCCCEECCCHHHHHHHHHHHHHHHH
Q ss_conf 205899999980----99------------99999999999999999981917664698214773599999999999998
Q gi|254780802|r 83 FGMPAENAAREH----NV------------HPKMWTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMK 146 (869)
Q Consensus 83 ~GlPie~~~~e~----~~------------~~~~~~~~~i~~~k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~ 146 (869)
+|+|+|.+++++ |+ .|++|++++.+.+++|++|||+|+||+|+|+||||.+.++|+..|.+||+
T Consensus 82 AGIaTq~~VEk~l~~~g~~r~d~gRe~Fl~~~weWk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv~Ly~ 161 (877)
T COG0525 82 AGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLYE 161 (877)
T ss_pred CCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 88308999999998709880105899999999999999989999999984787355531126798899999999999997
Q ss_pred CCCEEECCEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89634122133214776767789898438533456432233475233430344454432100225543222221000145
Q gi|254780802|r 147 HNVIVRKTAQVNWDPVEQTVLANEQVINGRGWRSDAPVEQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIG 226 (869)
Q Consensus 147 kGliyrg~~pV~wcp~~~t~la~~Ev~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~i~ 226 (869)
+||||||.+||||||+|+|||||.||++-+. +-..|
T Consensus 162 ~GlIYr~~~lVNWcP~~~TAiSd~EVe~~e~----------~g~L~---------------------------------- 197 (877)
T COG0525 162 KGLIYRGERLVNWCPKCRTAISDIEVEYKEV----------EGKLY---------------------------------- 197 (877)
T ss_pred CCCEEECCCCCCCCCCCCCCHHHHHHCCCCC----------CEEEE----------------------------------
T ss_conf 8946514874347886334020445000110----------03689----------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 57675453555677777751365320013444323200330244320345413145899988653111124555430255
Q gi|254780802|r 227 RSEGMEIRWEIVSNTIDQIEEILVYTTRPETIFGASFIAIAVDHSISEKLSCDNTDIKEFCDEEKQKGTSLSVLDKTEKK 306 (869)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~l~~~TtrPeTl~g~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (869)
.++|++.+ ..++|+|||||||||+|+++|+|||+++.+..
T Consensus 198 -----~i~y~l~~----~~~~i~VATTRPEtmlgdtAVaVhP~DeRYk~------------------------------- 237 (877)
T COG0525 198 -----YIKYPLAD----GDGYLVVATTRPETLLGDTAVAVHPDDERYKH------------------------------- 237 (877)
T ss_pred -----EEEEECCC----CCCEEEEEECCCCCCCCCEEEEECCCCHHHHH-------------------------------
T ss_conf -----99975389----98638998168630102669998998766686-------------------------------
Q ss_pred CCCCCCEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCC
Q ss_conf 32378610377777415776311234545333222111346721101221035443210167765554222112101233
Q gi|254780802|r 307 GIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIFGCPFADQRDMDFAKKYGLPIIPIMKRSINHSQDIEEGKAFSGDG 386 (869)
Q Consensus 307 ~~~~G~~~~~P~~~~~~ipv~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~k~glpi~~v~~~~~~~~~~~~~~~~~~~~~ 386 (869)
|+|+.+.+|+.+ +.+||+.+++|++++|||+|+++|+|+++||+++++|+||++.+++..+..+...
T Consensus 238 --LvGk~v~lPl~~-r~IpIiaD~~VD~eFGTG~VkItpahD~nD~e~~krh~Lp~i~i~d~dG~in~~~---------- 304 (877)
T COG0525 238 --LVGKEVILPLVG-REIPIIADEYVDPEFGTGAVKITPAHDFNDYEVGKRHNLPLINIIDEDGRINEEA---------- 304 (877)
T ss_pred --HCCCEEECCCCC-CEEEEECCCCCCCCCCCCEEEECCCCCCCHHHHHHCCCCCCEEEECCCCEECCCC----------
T ss_conf --358889646889-7533534733477678741897169994065453017987206888997054677----------
Q ss_pred CCCCCHHHCCCCHHHHHHHHHHHHHHHCCC-------------------------------------------------C
Q ss_conf 445830001356466548889999740467-------------------------------------------------7
Q gi|254780802|r 387 IMINSSFLDGMTNTEALQAVMSHLEKQNIK-------------------------------------------------N 417 (869)
Q Consensus 387 ~~~~~~~~~g~~~~~~~~~i~~~l~~~~~~-------------------------------------------------~ 417 (869)
.+.+.||.+.+|+++|++.|++.|.. .
T Consensus 305 ----~~~~~Gl~r~eAR~kIv~~L~~~GlLvk~e~~~h~V~~~~R~g~~IEp~ls~QWfVk~~~la~~~l~~~~~g~i~f 380 (877)
T COG0525 305 ----AGEFAGLDRFEARKKIVEDLEEQGLLVKIEPHKHSVGHCERCGTPIEPLLSKQWFVKVLELAKKALEAVKDGKIKF 380 (877)
T ss_pred ----CCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEEEECCEEEEEHHHHHHHHHHHHHCCCCEE
T ss_conf ----6445898699999999999996899676644454176116779602012324214870752699999874598468
Q ss_pred CCHHHHHHHH----HCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 5202221110----001112211232222234223334684634742000111001000224542100245642110136
Q gi|254780802|r 418 SPIGKRKINF----RLRDWCISRQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTWKKIFCVKC 493 (869)
Q Consensus 418 ~~~~~~~~~~----~l~DW~ISRqr~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l~~~~~~~~~~~~~~ 493 (869)
.|..-+..++ .++|||||||||||||||+|||.+||.+.+.++ .+ ++... ...|+.
T Consensus 381 ~P~~~~~~~~~W~~~i~DWcISRQlwwGh~IPvWy~~~~g~v~v~~~-~~----~~~~~--------------~~~~~~- 440 (877)
T COG0525 381 VPERMEKRYEDWMENIRDWCISRQLWWGHRIPVWYCKECGNVVVAEE-EP----EDPAA--------------AEKCPK- 440 (877)
T ss_pred ECHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEECCCCCEEECCC-CC----CCHHH--------------HCCCCH-
T ss_conf 16889988999986383764222113176351599669983896786-54----35354--------------246822-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 76443564323456664333223355565441013566411433440145554433202345553201347873223200
Q gi|254780802|r 494 GSEALRETDTMDTFVDSSWYYMRYMTPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIGYIEIDEPF 573 (869)
Q Consensus 494 ~~~~~r~~dvld~w~dS~~~~~~~~~~~~~~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~g~~~~~~pf 573 (869)
....+++||||+||+||++++..+++... ...++.++|+|++++|.| |+++|.+|+.+..++.+| +.||
T Consensus 441 -~~~~qd~DVLDTWFSS~LwPfstlgWp~~----t~~l~~fyPt~llvtG~D--IIffWvarmi~~~~~~~~----~~PF 509 (877)
T COG0525 441 -EELEQDEDVLDTWFSSSLWPFSTLGWPEE----TPDLKKFYPTDLLVTGHD--IIFFWVARMIMRGLHLTG----EVPF 509 (877)
T ss_pred -HCCCCCCCHHHHHHHCCCCCCCCCCCCCC----CHHHHHCCCCCEECCCCH--HHHHHHHHHHHHHHHHCC----CCCC
T ss_conf -02057852323324115646400689874----447773588730035531--338999999999998658----9996
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCCCCCCHHHH
Q ss_conf 22223553232243323587001306202210256777544110489706404742100000012222100123463356
Q gi|254780802|r 574 KRLFTQGMVVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTA 653 (869)
Q Consensus 574 ~~l~~~G~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~~yGaD~l 653 (869)
+++++||+|.|+ +|+||||||||||+|.++|++||||+|
T Consensus 510 k~V~ihGLVrDe-----------------------------------------~G~KMSKS~GNvIDP~d~I~~yGaDAl 548 (877)
T COG0525 510 KDVYIHGLVRDE-----------------------------------------QGRKMSKSKGNVIDPLDVIDKYGADAL 548 (877)
T ss_pred CEEEEEEEEECC-----------------------------------------CCCCCCCCCCCCCCHHHHHHHHCHHHH
T ss_conf 278981167868-----------------------------------------888875557885897999988485899
Q ss_pred HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC---CCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 6655301332111113432101145567788999997630---2466------789756999999999999999998816
Q gi|254780802|r 654 RLFVLSDSPPDRDIIWSNKGVDSTYQFIQQIWRLIYNAKD---ELQT------SSTKKDISLISKSTKFLERIEENYQNL 724 (869)
Q Consensus 654 Rl~~~~~~~~~~d~~~s~~~i~~~~rfl~kl~~l~~~~~~---~~~~------~~~~~D~~ils~~~~~i~~v~~~~e~~ 724 (869)
|||+++.+.+++|++|+++.+++++||+||+||...++.. .... ..+..|+||+++++++++.|+++|++|
T Consensus 549 Rf~la~~~~~G~Di~~~~~~~~~~rnF~nKlWNa~Rfv~~~~~~~~~~~~~~~~~~~~drWIls~l~~~v~~v~~~ld~y 628 (877)
T COG0525 549 RFTLASLASPGRDINFDEKRVEGYRNFLNKLWNATRFVLMNLDDLGPDDLDLLALSLADRWILSRLNETVKEVTEALDNY 628 (877)
T ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999536888665768899888999999987499999852544576543322235488999999999999999999862
Q ss_pred CHHHHHHHHHHHH-HHHHHHHHHHCCCCCCC------CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEECCC
Q ss_conf 8899999999999-99999998621100022------1799999999999999722343899999998289983551788
Q gi|254780802|r 725 SFNKAVANIHELV-NVISKPLMEIAKKKSNA------DRISTIRYILEKLIIMMSPMIPHLAEECWQLLGNAGLVAQQKW 797 (869)
Q Consensus 725 ~f~~ai~~i~~f~-n~ls~~y~~~~k~~~~~------~~~~~l~~vl~~l~~lLaPi~PhiaEEiw~~Lg~~~~i~~~~W 797 (869)
+|+.|.+.+|+|+ |+||+||++++|.+.+. ....+|+++|+.+++||||||||+|||||+.+.+.+||+.+.|
T Consensus 629 ~f~~a~~~ly~F~W~~fcD~YlEl~K~~l~~~~~~~~~a~~tL~~vl~~~lrLLhPfmPfiTEei~q~l~~~~si~~~~~ 708 (877)
T COG0525 629 RFDEAARALYEFIWNDFCDWYLELAKPRLYGGEEEKRAARATLYYVLDTLLRLLHPFMPFITEEIWQKLPGTESIHLASW 708 (877)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCEEEECCC
T ss_conf 37889999999969989899999821440285777899999999999999998488775015789986589883784168
Q ss_pred CCCCHH
Q ss_conf 665967
Q gi|254780802|r 798 PKLDPI 803 (869)
Q Consensus 798 P~~d~~ 803 (869)
|++++.
T Consensus 709 P~~~~~ 714 (877)
T COG0525 709 PEVDEE 714 (877)
T ss_pred CCCCHH
T ss_conf 986311
No 14
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=0 Score=1094.88 Aligned_cols=670 Identities=22% Similarity=0.330 Sum_probs=483.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH------------------------HCCCHHHHHHH
Q ss_conf 740047797789999997771898556768814020589999998------------------------09999999999
Q gi|254780802|r 49 IHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAARE------------------------HNVHPKMWTYQ 104 (869)
Q Consensus 49 lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e------------------------~~~~~~~~~~~ 104 (869)
|||||++|||++|+++|||||+|||||||||||||||||+++|++ ++.+|+.|+.+
T Consensus 1 LH~GH~~~~ti~DiiaRykrM~G~~Vl~p~GwD~~GlPi~~~ae~~~~~~~~~~~~~~~~~~~~~~~i~k~~~~~~~~~~ 80 (888)
T PRK12300 1 LHIGHGRTYTIGDIYARYKRMKGYNVLFPMGFHVTGTPILGIAERIAEGDPETIDIYRNLYGIPEEEIEKFKDPEYIVEY 80 (888)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 94055478799999999998079977999988889953899999986044468999877513668888875009999999
Q ss_pred HHHHHHHHHHHCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCHHHHHCCCCCCCCCCC
Q ss_conf 99999999998191766469821477359999999999999889634122133214776767789898438533456432
Q gi|254780802|r 105 NIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQVINGRGWRSDAPV 184 (869)
Q Consensus 105 ~i~~~k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~pV~wcp~~~t~la~~Ev~~g~~~~~~~~v 184 (869)
+++.|++||+|||+|+||+|+|+|+||.|++++||+|.+|+++||||||.+||+|||+|+||||||||++|+...
T Consensus 81 ~~~~~~~q~~rlG~s~DW~re~~T~dp~y~~~v~w~F~kL~ekGliyrg~~~V~WcP~~~T~la~~ev~~~~~~~----- 155 (888)
T PRK12300 81 FSKEAKEAMKRIGYSIDWRREFTTTDPEYSKFIEWQFRKLKEKGLIVKGSHPVGWCPKDENPVGDHDTKDGEEPT----- 155 (888)
T ss_pred HHHHHHHHHHHHCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCEEECCCCCCCCCCCCCHHHCCCCCC-----
T ss_conf 999999999983860636998664888799999999999997799497877867259878482220555087755-----
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEE
Q ss_conf 23347523343034445443210022554322222100014557675453555677777751365320013444323200
Q gi|254780802|r 185 EQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIRWEIVSNTIDQIEEILVYTTRPETIFGASFI 264 (869)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~TtrPeTl~g~~~i 264 (869)
.. +.+.++|+ ..+.++++||||||||||++++
T Consensus 156 -~~-----------------------------------------~~~~ikf~------~~~~~l~v~TTrPeTl~g~ta~ 187 (888)
T PRK12300 156 -IG-----------------------------------------EYTLIKFE------GDDLILPAATLRPETVFGVTNL 187 (888)
T ss_pred -EE-----------------------------------------EEEEEEEC------CCCEEEEEEECCHHHHHHHHEE
T ss_conf -16-----------------------------------------89999971------7982799972680254300003
Q ss_pred EEECCCCCCHHHHHCCHHH--HHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEEEEEECCCCCCCCCCCCCC
Q ss_conf 3302443203454131458--99988653111124555430255323786103777774157763112345453332221
Q gi|254780802|r 265 AIAVDHSISEKLSCDNTDI--KEFCDEEKQKGTSLSVLDKTEKKGIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIF 342 (869)
Q Consensus 265 ~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~P~~~~~~ipv~~~~~V~~~~GTG~V~ 342 (869)
||+|+++|+.....++..+ .+.+...+.+..... .....+++.|+|++++||++++ .+||++++||++++|||+||
T Consensus 188 ~v~Pd~~Yv~~~~~~e~~i~~~~~~~~l~~~~~~~~-~~~~~~g~~l~G~~~~~P~~~~-~ipI~~ad~V~~~~GTG~V~ 265 (888)
T PRK12300 188 WVNPDAEYVVAEVDGEKWIVSKEAARKLSFQDREVE-IIEEIKGSELIGKKVKNPVTGK-EVPILPAKFVDPDNGTGVVM 265 (888)
T ss_pred EECCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEE-EEEEECCCEECCEEEECCCCCC-EEEEEECCEECCCCCCCEEE
T ss_conf 777763234564277200899999999862221136-7532026330350898678898-73598614074788977289
Q ss_pred CCCCCCCCCCHHHHCCCCC------CCCCCCCCCCCCCCCCCHH----------------HCC---CCCCCC-CCHHHCC
Q ss_conf 1134672110122103544------3210167765554222112----------------101---233445-8300013
Q gi|254780802|r 343 GCPFADQRDMDFAKKYGLP------IIPIMKRSINHSQDIEEGK----------------AFS---GDGIMI-NSSFLDG 396 (869)
Q Consensus 343 ~~P~h~~~D~~~~~k~glp------i~~v~~~~~~~~~~~~~~~----------------~~~---~~~~~~-~~~~~~g 396 (869)
+|||||++||.++++++++ ++.+.+.+.....++.+.. .+. .+|++. +.+.+.|
T Consensus 266 ~vPaHd~~Dy~~~~~~~~~~~~~i~ii~v~~~g~~p~~~~~~~~~i~~~~d~~l~~a~~~~y~~e~~~G~l~~~~~~~~G 345 (888)
T PRK12300 266 SVPAHAPYDYVALRDLDVEEIELIPLIKVEGYGEFPAKEIVEKMGIKSQKDPELEEATKELYKAEFHKGVLREDTGEYAG 345 (888)
T ss_pred ECCCCCHHHHHHHHHCCCCCCCCCCCEEECCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEECCCCHHCCC
T ss_conf 65789877899998607242467772320566775277777750776644234777766542223117534156511069
Q ss_pred CCHHHHHHHHHHHHHHHCCCC-------------------------CCH---H----HH-------HHH-----------
Q ss_conf 564665488899997404677-------------------------520---2----22-------111-----------
Q gi|254780802|r 397 MTNTEALQAVMSHLEKQNIKN-------------------------SPI---G----KR-------KIN----------- 426 (869)
Q Consensus 397 ~~~~~~~~~i~~~l~~~~~~~-------------------------~~~---~----~~-------~~~----------- 426 (869)
+.+.+|++.+.++|.+.+... .|+ + +. .+.
T Consensus 346 ~~v~eA~~~i~~~L~~~g~~~~~y~~~~~~v~~R~g~~~v~~~~~dQWFi~~~~~~~k~~~~~~~~~i~~~P~~~~~~~~ 425 (888)
T PRK12300 346 KPVREAREKITEDLIESGIAEIMYEFSEKPVYCRCGTECVVKVVKDQWFIDYSNPEWKELAHKCLDRMRIIPEEARAEFE 425 (888)
T ss_pred CCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCEEECCHHHHHHH
T ss_conf 79999999999999977997403035778867899986763416876410478767789999876166565721345578
Q ss_pred ---HHCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCC-CCCCCCC
Q ss_conf ---000111221123222223422333468463474200011100100022454210024564211013676-4435643
Q gi|254780802|r 427 ---FRLRDWCISRQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTWKKIFCVKCGS-EALRETD 502 (869)
Q Consensus 427 ---~~l~DW~ISRqr~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~r~~d 502 (869)
.+++||||||||+||+||| |.+ .+.+.... +..++..... . ...+...+. ......+
T Consensus 426 ~~l~~l~DW~iSRqr~wGtpiP-wd~--~~~iesl~--------dstiy~~~yt------~--~~~~~~~~~~~~~l~~~ 486 (888)
T PRK12300 426 NKIDWLKDRACARRRGLGTPLP-WDE--RWVIESLS--------DSTIYMAYYT------I--AKKIRQYGLDPEQLTPE 486 (888)
T ss_pred HHHHCCCCCCCCCCCCCCCCCC-CCC--CEEEECCC--------CCCCHHHHHH------H--HHHHHCCCCCHHHCCCH
T ss_conf 7761468865456667697887-048--82342277--------7640010246------8--78763348995675810
Q ss_pred CCCCCCCCCCCC----CCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 234566643332----2335556544101356641143344014555443320234555320134787322320022223
Q gi|254780802|r 503 TMDTFVDSSWYY----MRYMTPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIGYIEIDEPFKRLFT 578 (869)
Q Consensus 503 vld~w~dS~~~~----~~~~~~~~~~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~g~~~~~~pf~~l~~ 578 (869)
++|.+|-+.... .....+.......++.+++|||+|++++|.|++.+|++|++|.+..+.+... .| +.+++
T Consensus 487 ~~d~v~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~wyP~D~~~~G~D~i~~hl~f~~~~~~aif~~~~----~p-k~v~~ 561 (888)
T PRK12300 487 FFDYVFLGKGDPEEISKKTGIPKEILEEMREEFEYWYPLDWRHSGKDLIPNHLTFFIFNHVAIFPEEK----WP-RGIVV 561 (888)
T ss_pred HCCEEECCCCCHHHHHHHHCCCHHHHHHHHHHHCEECCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCC----CC-CEEEE
T ss_conf 13043148997666666519988899986886464267601435310335679999988688717777----88-75798
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 55323224332358700130620221025677754411048970640474210000001222210012346335666553
Q gi|254780802|r 579 QGMVVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVL 658 (869)
Q Consensus 579 ~G~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~~~ 658 (869)
||++++ +|+||||||||||+|.++|++||||++|||++
T Consensus 562 ~G~Vl~------------------------------------------eG~KMSKSkGNvV~P~eiI~~YGADalRl~l~ 599 (888)
T PRK12300 562 NGFVLL------------------------------------------EGKKMSKSKGNVLPLREAIEEYGADVVRLYLA 599 (888)
T ss_pred EEEEEC------------------------------------------CCEECCCCCCCCCCHHHHHHHCCCCHHHHHHH
T ss_conf 328945------------------------------------------98770303489899899997619629999999
Q ss_pred HCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 01332111113432101145567788999997630246-67897569999999999999999988168899999999999
Q gi|254780802|r 659 SDSPPDRDIIWSNKGVDSTYQFIQQIWRLIYNAKDELQ-TSSTKKDISLISKSTKFLERIEENYQNLSFNKAVANIHELV 737 (869)
Q Consensus 659 ~~~~~~~d~~~s~~~i~~~~rfl~kl~~l~~~~~~~~~-~~~~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai~~i~~f~ 737 (869)
+++++++|++|+++++++++||++++|+++....+... .+....|+||++++|+++++|+++||+|+|++|++.++.++
T Consensus 600 ~~a~~~~d~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~D~wils~l~~~i~~v~~~~e~~~f~~a~~~~~~~~ 679 (888)
T PRK12300 600 STAELSQDADFREKEAESIRRQLERFYELAVELAEEESEEELRFIDKWLLSRLYSYIKEVTEAMEEFQTRKAIQEIFYNL 679 (888)
T ss_pred HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 71885568645799999999999999999997632677767766789999999999999999998445999999999999
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHCCCCEEEEEEC
Q ss_conf 99999998621100022179999999999999972234389999999828998355178866596786037714989973
Q gi|254780802|r 738 NVISKPLMEIAKKKSNADRISTIRYILEKLIIMMSPMIPHLAEECWQLLGNAGLVAQQKWPKLDPILEVNTDIILPIQVN 817 (869)
Q Consensus 738 n~ls~~y~~~~k~~~~~~~~~~l~~vl~~l~~lLaPi~PhiaEEiw~~Lg~~~~i~~~~WP~~d~~~~~~~~~~~~iqin 817 (869)
....+||++..+. ....+|+++|+.+++|||||+||+|||||+.||+++|||+++||++|+++.. .+
T Consensus 680 ~~~~~~Y~~~~~~----~~~~~l~~~l~~~~~LLaP~~PhiaEElW~~Lg~~~sV~~a~wP~~de~~id-~~-------- 746 (888)
T PRK12300 680 LNDLRWYLRRGGE----PNNKVLREVIEIWIRLLAPFTPHLAEEIWEKLGGEGFVSLAPWPEPDESKID-EE-------- 746 (888)
T ss_pred HHHHHHHHHHHCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCC-HH--------
T ss_conf 9999999987371----8899999999999999604104889999996799983770799999934279-89--------
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHCCHHHHHHHCCCCCEEEEECCC
Q ss_conf 816679980888899999999974788899846998259998189
Q gi|254780802|r 818 GKKRACITVSMNTDDDFIKKTVLELNVIKNILQGKSPKKIIIISK 862 (869)
Q Consensus 818 gk~r~~i~v~~~~~~~~i~~~~~~~~~i~~~l~~k~~~k~I~v~~ 862 (869)
.+...+.+++++.+.+++.+..+.++-+-+|||++
T Consensus 747 ----------~e~~~~~~~~~i~~ir~~~~~~~~~p~~~~i~va~ 781 (888)
T PRK12300 747 ----------AELAEEYVKNLIEDIKEIIKVAKINPKRVYIYVAP 781 (888)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC
T ss_conf ----------99999999999999999998619998669999796
No 15
>TIGR00395 leuS_arch leucyl-tRNA synthetase; InterPro: IPR004493 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Leucyl tRNA synthetase (6.1.1.4 from EC) is an alpha monomer that belongs to class Ia. There are two different families of leucyl-tRNA synthetases. This family includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases.; GO: 0000166 nucleotide binding, 0004823 leucine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006429 leucyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=1108.07 Aligned_cols=716 Identities=25% Similarity=0.387 Sum_probs=549.4
Q ss_pred HHHHHHHHHHHHCCCCCCC----------CCCCCC------CEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9989999999985980367----------678888------389980778978987400477977899999977718985
Q gi|254780802|r 10 ETDSIWQSAWYDSNIFKAE----------NGKNKK------KYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYS 73 (869)
Q Consensus 10 ~iE~kwq~~W~~~~~fe~~----------~~~~~~------kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~ 73 (869)
+||+|||++|+++++||++ ++ +++ |||+|.+|||+||.||+||.||+|+.|++|||+||+|||
T Consensus 2 ~IE~Kwqk~W~~~~iFe~daPsieDePitpd-~~ElhrtYPKff~t~AYPYlnG~lHaGH~rT~t~~e~~arF~RM~Gkn 80 (1109)
T TIGR00395 2 AIEKKWQKRWEEAKIFEADAPSIEDEPITPD-DRELHRTYPKFFLTVAYPYLNGVLHAGHLRTFTIPEVVARFERMKGKN 80 (1109)
T ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC-CHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCE
T ss_conf 4125678735544775147776567888886-113431155032015765567442123344333131588766106840
Q ss_pred CCCCCCCCCCCHHHHHHHHH------------------------------------------------------------
Q ss_conf 56768814020589999998------------------------------------------------------------
Q gi|254780802|r 74 VLHPMGWDAFGMPAENAARE------------------------------------------------------------ 93 (869)
Q Consensus 74 Vl~~~G~d~~GlPie~~~~e------------------------------------------------------------ 93 (869)
||||+||||||+||.+.|+.
T Consensus 81 vLFPlGfHvTG~Pilg~A~~i~~~de~t~~~Y~~~h~eeeeikeetPaekDheDvtkfkakkskaaakkGrGkYqfeiml 160 (1109)
T TIGR00395 81 VLFPLGFHVTGTPILGLAELIKRRDEKTIKVYTEVHAEEEEIKEETPAEKDHEDVTKFKAKKSKAAAKKGRGKYQFEIML 160 (1109)
T ss_pred ECCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 02246544358627889999730060467885205751344301577644414566665444356664178731245633
Q ss_pred ----------HCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCEECCC--HHHHHHHHHHHHHHHHCCCEEECCEEEECCC
Q ss_conf ----------0999999999999999999998191766469821477--3599999999999998896341221332147
Q gi|254780802|r 94 ----------HNVHPKMWTYQNIKVMRKQLQSIGLSIDWSKDFATCD--VDYYHCQQLLFLDFMKHNVIVRKTAQVNWDP 161 (869)
Q Consensus 94 ----------~~~~~~~~~~~~i~~~k~~~~~lG~~~DW~r~y~T~d--~~y~~~v~w~f~~L~~kGliyrg~~pV~wcp 161 (869)
+..+|+.|+++|.....+.|++||+|+||||.|+|+| |.|.+|++|||.||.++|||.+|.|||.|||
T Consensus 161 qlGiP~eel~~l~dpe~iveYFs~~~~~~~~~~G~siDWRR~F~TtDan~~Y~~FI~WQ~~KLk~~Gli~kG~hpv~Ycp 240 (1109)
T TIGR00395 161 QLGIPREELLKLTDPEYIVEYFSREAESALKSMGYSIDWRREFKTTDANPVYDRFIEWQIRKLKELGLIVKGEHPVRYCP 240 (1109)
T ss_pred ECCCCHHHHHHHCCCCEEEECCCHHHHHHHHHCCCEEECCCCCEECCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCC
T ss_conf 13798799972048430210388779999986488052255521258746667899999999986595441786602377
Q ss_pred CCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 76767789898438533456432233475233430344454432100225543222221000145576754535556777
Q gi|254780802|r 162 VEQTVLANEQVINGRGWRSDAPVEQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIRWEIVSNT 241 (869)
Q Consensus 162 ~~~t~la~~Ev~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~i~~~~~~~~~~~~~~~~ 241 (869)
+|++||.|||+..||+. ...++..+-|+..+.++.-. .+--.-.+-.
T Consensus 241 ~d~npv~DHD~l~GE~v------t~~ey~~~Kf~~~d~~DDaa---------------------------kiiDsssDlD 287 (1109)
T TIGR00395 241 KDENPVEDHDLLSGEGV------TIVEYILIKFKLEDGADDAA---------------------------KIIDSSSDLD 287 (1109)
T ss_pred CCCCCCCCCCCCCCCCC------CCEEEEEEEEEECCCCCCHH---------------------------HHHHHHHHHH
T ss_conf 77685445553335643------30103676666427753024---------------------------5431111010
Q ss_pred CCCCCEEEEEEECCCCCCCCCEEEEECCCCCCHHHHHCCH----HH-----------HHHHHHHHHHHHH-----HHHHH
Q ss_conf 7775136532001344432320033024432034541314----58-----------9998865311112-----45554
Q gi|254780802|r 242 IDQIEEILVYTTRPETIFGASFIAIAVDHSISEKLSCDNT----DI-----------KEFCDEEKQKGTS-----LSVLD 301 (869)
Q Consensus 242 ~~~~~~l~~~TtrPeTl~g~~~i~v~~~~~~~~~~~~~~~----~~-----------~~~~~~~~~~~~~-----~~~~~ 301 (869)
.++..++++||+||||+||+|||||+|+.+|+..-+.++. ++ +++.+..+.+... +.++
T Consensus 288 kskk~~~v~ATLRPET~yG~Tn~wv~P~~~Yv~~~~~~e~etenGielienGiwi~~~~A~~~L~yq~~~PkrGf~~~~- 366 (1109)
T TIGR00395 288 KSKKLYFVAATLRPETVYGVTNVWVNPDITYVIAEVGGEKETENGIELIENGIWIVSKEAVENLSYQKLKPKRGFLKVI- 366 (1109)
T ss_pred CCCCEEEECCCCCCCHHHCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCEEEEE-
T ss_conf 1451664035688741007553555577516899733740012004455422577789999604343458874227886-
Q ss_pred HHCCCCCCCCCEECCC-CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC----------HHHHCCCC----------
Q ss_conf 3025532378610377-77741577631123454533322211134672110----------12210354----------
Q gi|254780802|r 302 KTEKKGIYTGIHVKHP-LNPNVVIPVYIANFVFMNYGTGAIFGCPFADQRDM----------DFAKKYGL---------- 360 (869)
Q Consensus 302 ~~~~~~~~~G~~~~~P-~~~~~~ipv~~~~~V~~~~GTG~V~~~P~h~~~D~----------~~~~k~gl---------- 360 (869)
....++.|+|.++.+| +++.. +||||++||+++.|||||||||||+|.|| ++..+||+
T Consensus 367 ~~v~g~~liG~~v~~Pq~v~~e-~pILPa~fV~~~~gTGvV~sVPahaP~Dyia~~DL~~d~E~l~~YGi~k~~v~di~~ 445 (1109)
T TIGR00395 367 EEVDGKQLIGKKVKNPQVVGKE-VPILPAEFVDTEKGTGVVMSVPAHAPADYIALEDLKRDEELLEKYGIIKDVVEDIEP 445 (1109)
T ss_pred EEECHHHHCCCEEECCCCCCCC-CCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCHHHHHHCCCCHHHHHCCCC
T ss_conf 5307342417644577325897-754770112678885478841788703589998607780145532773246641485
Q ss_pred -CCCCCCCCCCCCCCCCCCHHHC--------------------CCCCCCC-CCHHHCCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf -4321016776555422211210--------------------1233445-83000135646654888999974046775
Q gi|254780802|r 361 -PIIPIMKRSINHSQDIEEGKAF--------------------SGDGIMI-NSSFLDGMTNTEALQAVMSHLEKQNIKNS 418 (869)
Q Consensus 361 -pi~~v~~~~~~~~~~~~~~~~~--------------------~~~~~~~-~~~~~~g~~~~~~~~~i~~~l~~~~~~~~ 418 (869)
|++.+..+|..+++.+.+.... -.+|++. |.-.|.|+.+++|++.+.++|.+.|....
T Consensus 446 v~~i~~~~yG~~pA~~ive~~gi~sq~dk~~L~~Atk~~YK~ey~~Gvm~~~~~~Y~G~kV~eak~~v~~dL~~~GlA~v 525 (1109)
T TIGR00395 446 VPLIKVDGYGDLPAKEIVEELGIKSQKDKNLLEEATKELYKEEYHTGVMIENILDYKGMKVSEAKEKVKEDLIDKGLADV 525 (1109)
T ss_pred EEEEEECCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCHHHCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 56763088777548999988288887720247887400221321500320477578861179999999999985378602
Q ss_pred CH--HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCH---------------
Q ss_conf 20--2221110001112211232222234223334684634742000111001000224542100---------------
Q gi|254780802|r 419 PI--GKRKINFRLRDWCISRQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLEN--------------- 481 (869)
Q Consensus 419 ~~--~~~~~~~~l~DW~ISRqr~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l~~--------------- 481 (869)
-. +.+. .||| ||. .|.|++.+||||..|++.-|+
T Consensus 526 ~yEFsE~~--------VicR---------------cG~------~CiV~v~~DQWF~~Ys~~~WK~~a~~CLegM~~ip~ 576 (1109)
T TIGR00395 526 MYEFSEKP--------VICR---------------CGT------KCIVKVVEDQWFVKYSDESWKELAHECLEGMRIIPE 576 (1109)
T ss_pred ECCCCCCC--------EEEC---------------CCC------CCEEEEECCEEEEECCCHHHHHHHHHHHHCCCCCCH
T ss_conf 01657885--------1202---------------679------606988516001114515689999987433732768
Q ss_pred --------HHHHHH-HHHC---CCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCHHHHHH-HCCCHHHHCCCCCCC
Q ss_conf --------245642-1101---367644356432-34566643332233555654410135664-114334401455544
Q gi|254780802|r 482 --------HPTWKK-IFCV---KCGSEALRETDT-MDTFVDSSWYYMRYMTPHAKDPINKELVR-QWFPVDQYIGGIEHA 547 (869)
Q Consensus 482 --------~~~~~~-~~~~---~~~~~~~r~~dv-ld~w~dS~~~~~~~~~~~~~~~~~~e~~~-~~~P~D~~i~g~d~~ 547 (869)
..+|.+ ..|. .+|++++++..+ +++++||++|+++|+..|.-. +.... ..-|.- + +.||-
T Consensus 577 ~~k~~F~~~idWL~dwAc~Rr~GLGTrlPwde~wliESLsDSTIY~aYYtiA~~l~---~~~~g~EiGPlG--i-saD~m 650 (1109)
T TIGR00395 577 EVKEAFEEKIDWLKDWACARRKGLGTRLPWDEKWLIESLSDSTIYMAYYTIAKYLN---KDDLGNEIGPLG--I-SADQM 650 (1109)
T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHH---HCCCCCCCCCCC--C-CHHCC
T ss_conf 88888877666423630461246777787567547712762325678999999985---214577645554--4-42005
Q ss_pred CCCCHHHHHHHHHCCCCCCCC-----CCCCCCCCCCCCCCC-CCCCCCCC-CCCCEEECCCHHHC-----CCCCCCCCCC
Q ss_conf 332023455532013478732-----232002222355323-22433235-87001306202210-----2567775441
Q gi|254780802|r 548 VLHLLYARFFAHILKKIGYIE-----IDEPFKRLFTQGMVV-HETYYQLE-GIKKKYLKPDEVIL-----RNIEGENCAF 615 (869)
Q Consensus 548 ~~~~~~~r~~~~~l~~~g~~~-----~~~pf~~l~~~G~v~-~~~~~~~~-~~~~~~~~p~~~~~-----~~~~~~~~~~ 615 (869)
+ -.|+.|++++-|.+. ..-|- -.+++|.. .+.|||++ ++|+|+|+||||.| .+++|+..||
T Consensus 651 t-----~E~fDyifl~~gdV~K~Ak~t~ip~--~~~~~lR~eF~Y~YPlD~r~SgKDLi~NHLtFyiF~HvAiFP~~~WP 723 (1109)
T TIGR00395 651 T-----DEFFDYIFLGKGDVDKVAKNTNIPL--ELIEKLREEFEYWYPLDWRISGKDLIPNHLTFYIFHHVAIFPEKFWP 723 (1109)
T ss_pred C-----HHHHHHHHCCCCCHHHHHHHHCCCH--HHHHHHHHHCCEECCCCCCCCCCCCCHHHHHHHHHHEEEECCCCCCC
T ss_conf 7-----4452243238871567765407888--89987554341005601002431010346776644002424879897
Q ss_pred EECCCCEEEECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 10489706404742100000012222100123463356665530133211111343210114556778899999763024
Q gi|254780802|r 616 RLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDIIWSNKGVDSTYQFIQQIWRLIYNAKDEL 695 (869)
Q Consensus 616 ~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~~~~~~~~~~d~~~s~~~i~~~~rfl~kl~~l~~~~~~~~ 695 (869)
+....|+.+..+|.|||||+||++++.+++++||||+.|||++++|+..+|++|.++.+.++.+.|.+|+++...+....
T Consensus 724 rGi~vnG~~~Leg~KmSkSkGn~l~l~~~vekfGADv~Rl~~~~aAe~~~Dad~~~~e~~~~~~~L~~l~~~a~e~~~~~ 803 (1109)
T TIGR00395 724 RGIVVNGYVLLEGKKMSKSKGNVLTLKEAVEKFGADVARLYILDAAELVQDADWKESEVEGTKKRLERLYEFAEEITKKS 803 (1109)
T ss_pred CEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 61799757887173405454762238899987276189999973178721356106778999999999999999985430
Q ss_pred C-----------CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH-HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 6-----------6789756999999999999999998816889999-999999999999998621100022179999999
Q gi|254780802|r 696 Q-----------TSSTKKDISLISKSTKFLERIEENYQNLSFNKAV-ANIHELVNVISKPLMEIAKKKSNADRISTIRYI 763 (869)
Q Consensus 696 ~-----------~~~~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai-~~i~~f~n~ls~~y~~~~k~~~~~~~~~~l~~v 763 (869)
+ ...+.+|+|+++++|+.|++++++|+++++++|+ .+||+|.+++ +||++.+..+..-+.+++|..+
T Consensus 804 ~GrPvl~e~GPaE~~~f~D~wl~~~l~~~i~~~~e~~~~~~~r~A~~~~Lf~L~~d~-~~Y~~r~g~~~~Devksvla~~ 882 (1109)
T TIGR00395 804 DGRPVLLEVGPAEELSFIDRWLLSRLNKAIKEVTEAMENFQTRKAVKAALFDLKADV-DWYRRRGGENVKDEVKSVLARV 882 (1109)
T ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCCCHHHHHHHHHHH
T ss_conf 684011035777631052189999999999999999986667899999999999999-9999864884005799999999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHC-CCCCCEEECCCCCCCHHH
Q ss_conf 99999997223438999999982-899835517886659678
Q gi|254780802|r 764 LEKLIIMMSPMIPHLAEECWQLL-GNAGLVAQQKWPKLDPIL 804 (869)
Q Consensus 764 l~~l~~lLaPi~PhiaEEiw~~L-g~~~~i~~~~WP~~d~~~ 804 (869)
|+++++|||||+||+|||||+.+ |+++||++++||++++..
T Consensus 883 l~~~i~LlaPf~Ph~aEe~w~~~lG~~~fV~~a~fP~~~~~~ 924 (1109)
T TIGR00395 883 LETWIKLLAPFAPHLAEEMWEEVLGKEGFVSLAKFPEASEEA 924 (1109)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHH
T ss_conf 999999832312168999999970887311367798987502
No 16
>pfam00133 tRNA-synt_1 tRNA synthetases class I (I, L, M and V). Other tRNA synthetase sub-families are too dissimilar to be included.
Probab=100.00 E-value=0 Score=1054.06 Aligned_cols=546 Identities=26% Similarity=0.416 Sum_probs=422.6
Q ss_pred HHHHHHHHCCCCCC--CCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 99999998598036--7678888389980778978987400477977899999977718985567688140205899999
Q gi|254780802|r 14 IWQSAWYDSNIFKA--ENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAA 91 (869)
Q Consensus 14 kwq~~W~~~~~fe~--~~~~~~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~ 91 (869)
++|++|+++++||+ +.++++|||++++|||||||.|||||+||||++|++|||+||+||||||||||||||||||.++
T Consensus 1 eiq~~W~~~~~f~~~~~~~~~k~kf~i~~~pPY~nG~lH~GH~~~~t~~D~~aRy~rm~G~~Vl~p~GwD~~GlPiE~~v 80 (606)
T pfam00133 1 QIYQFWDEQGYFKKSLENGKGKPSFTIHDGPPNATGLLHIGHALNKTLKDIVIRYKRMQGFDVLWVPGWDHHGLPTEQKV 80 (606)
T ss_pred CHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 96789875799057633479999589970898978850242668789999999999828997799884561439999999
Q ss_pred HHH-----CC------------CHHHHHHHHHHHHHHHHHHCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECC
Q ss_conf 980-----99------------9999999999999999998191766469821477359999999999999889634122
Q gi|254780802|r 92 REH-----NV------------HPKMWTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKT 154 (869)
Q Consensus 92 ~e~-----~~------------~~~~~~~~~i~~~k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~ 154 (869)
+++ +. .|+.|+.++++.|++||+|||+|+||+|+|.|+||+|++++||+|.+|+++||||||.
T Consensus 81 ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~DW~r~~~T~dp~y~~~~~w~F~~L~~~Gliyr~~ 160 (606)
T pfam00133 81 EKKLGIKGKKDRHKLGREKFREKCREWKMEYADEIRSQFKRLGVSGDWDREYFTLDPGLEAAVWRVFVRLHDKGLIYRGK 160 (606)
T ss_pred HHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99742115998365799999999999999999999999998291264588725278125499999999999779817751
Q ss_pred EEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 13321477676778989843853345643223347523343034445443210022554322222100014557675453
Q gi|254780802|r 155 AQVNWDPVEQTVLANEQVINGRGWRSDAPVEQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIR 234 (869)
Q Consensus 155 ~pV~wcp~~~t~la~~Ev~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~i~~~~~~~~~ 234 (869)
+||+|||.|+||||||||++++. ..++ ..++
T Consensus 161 ~~V~wcp~~~T~La~~Ev~~~d~----------~~~~---------------------------------------~~v~ 191 (606)
T pfam00133 161 KPVNWSPALNTALSEAEVEYKDV----------KGPS---------------------------------------IHVA 191 (606)
T ss_pred EEECCCCCCCEECCCCCEEECCC----------CCCE---------------------------------------EEEE
T ss_conf 55012442541224440210003----------3303---------------------------------------5650
Q ss_pred CCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCHHHHHCCHHH--HHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 5556777777513653200134443232003302443203454131458--99988653111124555430255323786
Q gi|254780802|r 235 WEIVSNTIDQIEEILVYTTRPETIFGASFIAIAVDHSISEKLSCDNTDI--KEFCDEEKQKGTSLSVLDKTEKKGIYTGI 312 (869)
Q Consensus 235 ~~~~~~~~~~~~~l~~~TtrPeTl~g~~~i~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 312 (869)
|++.+ +.+.++++||||||||||+++++++|+++|+......+..+ ...+.................+++.|+|+
T Consensus 192 f~l~~---~~~~~l~i~TTrPeTl~g~~~l~v~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~G~ 268 (606)
T pfam00133 192 FPLAD---GKGASLVIWTTTPWTLPGNTAVAVNPEFNYVKIRVTGEYYILAEALLKSLYKKKKEDGEILEDFRGKELIGK 268 (606)
T ss_pred CCCCC---CCCCEEEEEECCCCCCCCCEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEECCC
T ss_conf 44578---987669999435420036536898888765104438606789999999997403302433313345231277
Q ss_pred EECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCH-------------
Q ss_conf 1037777741577631123454533322211134672110122103544321016776555422211-------------
Q gi|254780802|r 313 HVKHPLNPNVVIPVYIANFVFMNYGTGAIFGCPFADQRDMDFAKKYGLPIIPIMKRSINHSQDIEEG------------- 379 (869)
Q Consensus 313 ~~~~P~~~~~~ipv~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~k~glpi~~v~~~~~~~~~~~~~~------------- 379 (869)
.+.||++++ .+||++++||++++|||+||+|||||++||+++++++||++.+++..+.......+-
T Consensus 269 ~~~~P~~~~-~ipv~~~~~V~~~~GTG~V~~vPah~~~D~~~~~k~~l~~~~~i~~~g~~~~~~~~~~G~~v~~a~~~ii 347 (606)
T pfam00133 269 KYIHPFVNR-EIPIIADDYVDMEFGTGAVHIAPAHGEDDYEVGKRHNLEFINPVDDDGTYNEEAPEFQGLKRFKARKKIV 347 (606)
T ss_pred EEECCCCCC-EEEEEECCCCCCCCCCCCEECCCCCCHHHHHHHHHCCCCCEEEECCCCEECCCCCCCCCCEEEECCHHHH
T ss_conf 897887897-5789954641566687713336777779999999839985024489884667651115852560218999
Q ss_pred HHCCCCCCCC------CCHHH---------------CCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHH---HCCCCCCC
Q ss_conf 2101233445------83000---------------135646654888999974046775202221110---00111221
Q gi|254780802|r 380 KAFSGDGIMI------NSSFL---------------DGMTNTEALQAVMSHLEKQNIKNSPIGKRKINF---RLRDWCIS 435 (869)
Q Consensus 380 ~~~~~~~~~~------~~~~~---------------~g~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~---~l~DW~IS 435 (869)
..+...|.++ ++.++ +.+...+.++.+++.+++..+.+.. ++++... +++|||||
T Consensus 348 ~~L~~~g~l~~~~~~~~~~p~~~R~~~~vi~~~~~QWFi~~~~~k~~~~~~~~~~~~~P~~-~~~~~~~~l~~l~DW~iS 426 (606)
T pfam00133 348 ELLTEKGLLLKIEPIEHSYPHCWRSGTPIIYRATPQWFVRMKNLAEAALKAVEKVQFVPKW-GEKRYGNWLENIQDWCIS 426 (606)
T ss_pred HHHHHCCCEEEEEEECCCCCEECCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCHH-HCCHHHEEECCCCCCEEE
T ss_conf 9788689866532201015555478947999602787775599999999864433027501-012033055256563575
Q ss_pred CCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-CCCC
Q ss_conf 123222223422333468463474200011100100022454210024564211013676443564323456664-3332
Q gi|254780802|r 436 RQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTWKKIFCVKCGSEALRETDTMDTFVDS-SWYY 514 (869)
Q Consensus 436 Rqr~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~dvld~w~dS-~~~~ 514 (869)
|||+||+|||||||++|+.+.++.+........ ....+...+.+.. ....|+.|++.+.|++||||+|||| +||+
T Consensus 427 RQR~WGtPIPi~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~re~DtmDtwfdSg~~~~ 502 (606)
T pfam00133 427 RQRWWGHPIPAWYSKDTGEVYVRGSLKELVAGR---EEEEGIEAWLHRD-AKDLLGKGAGTLEQDEDVLDTWFSSGSWPF 502 (606)
T ss_pred EECCCCCCCCEEECCCCCCCCCCCHHHHHHHHH---HCCCCCCCCCCCC-HHHHCCCCCCCEEECCEEEECEECCCCCHH
T ss_conf 414678732269837898316750245555443---0466753101212-465535788751567761202111775689
Q ss_pred CCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2335556544101356641143344014555443320234555320134787-322320022223553232243323587
Q gi|254780802|r 515 MRYMTPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIGY-IEIDEPFKRLFTQGMVVHETYYQLEGI 593 (869)
Q Consensus 515 ~~~~~~~~~~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~g~-~~~~~pf~~l~~~G~v~~~~~~~~~~~ 593 (869)
+++..|+. +++.+++|+|+|+|++|.||. |+|++.+...+. +..++||+++++||+|++.
T Consensus 503 ~~~~~p~~----~~~~f~~~~PvD~~i~G~D~~-------r~w~~~~~~~~~~~~~~~Pfk~l~~~G~vld~-------- 563 (606)
T pfam00133 503 STLGYPFT----NTPEFKRFFPADMLLEGSDQT-------RGWFYRMIVLGTALTGSAPYKNVLVHGLVRDE-------- 563 (606)
T ss_pred HHHCCCHH----CHHHHHCCCCCCEEECCHHHH-------HHHHHHHHHCCCCCCCCCCCCEEEECCEEECC--------
T ss_conf 88478512----769895388984897767688-------48999999700002799765458876618999--------
Q ss_pred CCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 00130620221025677754411048970640474210000001222210012346335666553013321111134
Q gi|254780802|r 594 KKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDIIWS 670 (869)
Q Consensus 594 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~~~~~~~~~~d~~~s 670 (869)
+|+||||||||||+|.++|++||||++|||+++ +++++|++||
T Consensus 564 ---------------------------------~G~KMSKSkGNvv~p~~~i~~yGaD~~Rl~~~~-a~~~~D~~~S 606 (606)
T pfam00133 564 ---------------------------------QGRKMSKSLGNVIDPLDVIDKYGADALRLWLAS-SDYGRDINFS 606 (606)
T ss_pred ---------------------------------CCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHC-CCCHHCCCCC
T ss_conf ---------------------------------887888888997898999987492999999975-9922046559
No 17
>KOG0432 consensus
Probab=100.00 E-value=0 Score=932.34 Aligned_cols=657 Identities=25% Similarity=0.378 Sum_probs=514.2
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCC-CCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 8765689998999999998598036767-888838998077897898740047797789999997771898556768814
Q gi|254780802|r 3 TRSYSPQETDSIWQSAWYDSNIFKAENG-KNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWD 81 (869)
Q Consensus 3 ~~~y~~~~iE~kwq~~W~~~~~fe~~~~-~~~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d 81 (869)
.+.|+|+.+|..|+.+|++.+.|+++.. ..++.|.+..|||+.+|.||+|||+|.+++|.++||+||+||.|+|.||+|
T Consensus 43 ~~~y~p~~vE~~wy~ww~k~g~fkp~~~~~~~~~f~i~~PPPNVTG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~PG~D 122 (995)
T KOG0432 43 PAAYSPAYVESAWYKWWEKQGFFKPEYGPNPGGVFVIPLPPPNVTGSLHIGHALTVAIQDALARYNRMHGYQVLWVPGTD 122 (995)
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCC
T ss_conf 65678613688889889871788865677888853251599976563106578887889999999982597533248866
Q ss_pred CCCHHHHHHHHHH-----CC------------CHHHHHHHHHHHHHHHHHHCCCEEECCCCEECCCHHHHHHHHHHHHHH
Q ss_conf 0205899999980-----99------------999999999999999999819176646982147735999999999999
Q gi|254780802|r 82 AFGMPAENAAREH-----NV------------HPKMWTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDF 144 (869)
Q Consensus 82 ~~GlPie~~~~e~-----~~------------~~~~~~~~~i~~~k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L 144 (869)
+.|+.++..+++. +. ++++|.+++...+.+|++|||.|.||+|+++|||+...+.|..+|.+|
T Consensus 123 HAGIATQ~VVEK~l~~~~~~~Rh~lgRe~F~~~vw~Wk~e~g~~I~~Qlk~lGas~DW~re~fTmD~~~s~AV~eAFvrL 202 (995)
T KOG0432 123 HAGIATQVVVEKQLAREGGKTRHDLGREEFLKEVWEWKEEYGGRIYNQLKRLGASLDWDREAFTMDPKLSRAVTEAFVRL 202 (995)
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHH
T ss_conf 33524799999999871586321148999999999999885851999999835732014756034778889999999998
Q ss_pred HHCCCEEECCEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 98896341221332147767677898984385334564322334752334303444544321002255432222210001
Q gi|254780802|r 145 MKHNVIVRKTAQVNWDPVEQTVLANEQVINGRGWRSDAPVEQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNW 224 (869)
Q Consensus 145 ~~kGliyrg~~pV~wcp~~~t~la~~Ev~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~ 224 (869)
+++|+|||+.+.|||||..+|++||.||++-+- -... ++..+.| .++|..
T Consensus 203 ~eeglIyR~~rlVNW~~~L~saiSdiEVe~~ei-------~~~t----~l~vpGy--------------d~~VeF----- 252 (995)
T KOG0432 203 HEEGLIYRANRLVNWCPALRSAISDIEVESVEI-------PGRT----LLSVPGY--------------DTKVEF----- 252 (995)
T ss_pred HHCCCEEECCCEEEECHHHHHHHHHHEECCEEC-------CCCC----EEECCCC--------------CCCEEE-----
T ss_conf 764846733752641366775654540012125-------8873----5734787--------------762353-----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 45576754535556777777513653200134443232003302443203454131458999886531111245554302
Q gi|254780802|r 225 IGRSEGMEIRWEIVSNTIDQIEEILVYTTRPETIFGASFIAIAVDHSISEKLSCDNTDIKEFCDEEKQKGTSLSVLDKTE 304 (869)
Q Consensus 225 i~~~~~~~~~~~~~~~~~~~~~~l~~~TtrPeTl~g~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (869)
| ....+.+++.+ ....++++|||||||+|++++||+|+.+.++.
T Consensus 253 -G--~L~~~aY~v~g----s~~~i~VaTTRpET~lGDvAvAVhP~D~RYk~----------------------------- 296 (995)
T KOG0432 253 -G--VLYSFAYPVEG----SDEEIVVATTRPETILGDVAVAVHPDDDRYKH----------------------------- 296 (995)
T ss_pred -E--EEEEEEEECCC----CCCEEEEECCCCCCCCCCEEEEECCCCCCCCC-----------------------------
T ss_conf -2--34577876058----98738973488641113315775787764300-----------------------------
Q ss_pred CCCCCCCCEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCC
Q ss_conf 55323786103777774157763112345453332221113467211012210354432101677655542221121012
Q gi|254780802|r 305 KKGIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIFGCPFADQRDMDFAKKYGLPIIPIMKRSINHSQDIEEGKAFSG 384 (869)
Q Consensus 305 ~~~~~~G~~~~~P~~~~~~ipv~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~k~glpi~~v~~~~~~~~~~~~~~~~~~~ 384 (869)
+-|++++||++ ++.+||+.+.+|+|++|||+|...|||++.||++++++|||.++++++.+.....
T Consensus 297 ----lhGk~~~hP~~-~r~lPiI~D~~Vd~~fGTGaVKITPaHd~nDyEvgkRh~L~~~ni~~~dG~l~~~--------- 362 (995)
T KOG0432 297 ----LHGKFVKHPFT-GRKLPIICDIAVDMEFGTGAVKITPAHDPNDYEVGKRHNLEFINIFTDDGLLNNV--------- 362 (995)
T ss_pred ----CCCCEEECCCC-CCCCCEEECCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCEEEECCCCCEECC---------
T ss_conf ----06754434777-9966566311025445666247367888067888875399812678587853225---------
Q ss_pred CCCCCCCHHHCCCCHHHHHHHHHHHHHHH-------------------------------------------------CC
Q ss_conf 33445830001356466548889999740-------------------------------------------------46
Q gi|254780802|r 385 DGIMINSSFLDGMTNTEALQAVMSHLEKQ-------------------------------------------------NI 415 (869)
Q Consensus 385 ~~~~~~~~~~~g~~~~~~~~~i~~~l~~~-------------------------------------------------~~ 415 (869)
.+.+.||.+-+|+++|++.|.+. .+
T Consensus 363 ------~gef~Gm~RFeAR~kvv~~L~e~gL~~g~~~h~mvlpiCSRsgDVIEpllkpQW~v~c~ema~~A~~av~sG~L 436 (995)
T KOG0432 363 ------CGEFKGMKRFEAREKVVEKLKELGLYVGKENHPMVLPICSRSGDVIEPLLKPQWFVSCKEMAKKALKAVESGKL 436 (995)
T ss_pred ------CHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCHHEEEHHHHHHHHHHHHHCCCE
T ss_conf ------41004747888999999999984155316788525233477777336012540013379999999998744975
Q ss_pred CCCCHHHHHHHH----HCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHH-
Q ss_conf 775202221110----001112211232222234223334684634742000111001000224542100245642110-
Q gi|254780802|r 416 KNSPIGKRKINF----RLRDWCISRQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTWKKIFC- 490 (869)
Q Consensus 416 ~~~~~~~~~~~~----~l~DW~ISRqr~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l~~~~~~~~~~~- 490 (869)
...|...++.-+ +++|||||||.||||.||+|+...... ...++.|... ...+.+..-..-.+
T Consensus 437 ~i~P~~~~k~w~~W~~~i~DWCiSRQLWWGHrIPAy~v~~~~~----------~~ee~~Wvv~--rseeeA~ekaa~k~g 504 (995)
T KOG0432 437 EILPEFHEKEWYRWLENIRDWCISRQLWWGHRIPAYFVNLSDG----------RAEEDYWVVA--RSEEEAREKAAEKFG 504 (995)
T ss_pred EECCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCEEEEECCCC----------CCCCCEEEEE--CCHHHHHHHHHHHHC
T ss_conf 8775577878999975130212134443045464256202467----------7766616885--889999999999718
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf 13676443564323456664333223355565441013566411433440145554433202345553201347873223
Q gi|254780802|r 491 VKCGSEALRETDTMDTFVDSSWYYMRYMTPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIGYIEID 570 (869)
Q Consensus 491 ~~~~~~~~r~~dvld~w~dS~~~~~~~~~~~~~~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~g~~~~~ 570 (869)
+.....+.|++||||+||+|++++....++-. ..+.++.+||.+++-+|.| |++||.+||.+.-+.-+| .
T Consensus 505 ~~~~~~L~qDpDVLDTWFSS~L~PfS~lGWP~----~t~d~~~fyP~sllETG~D--ILfFWVaRMvmLg~kLtG----~ 574 (995)
T KOG0432 505 PGKEFTLEQDPDVLDTWFSSGLWPFSTLGWPE----ETKDFKNFYPLSLLETGHD--ILFFWVARMVMLGLKLTG----E 574 (995)
T ss_pred CCCCCEEECCCCHHHHHHHCCCCCCHHCCCCC----CCCCHHHCCCCHHHHCCCH--HHHHHHHHHHHHHHHHCC----C
T ss_conf 85321251484277766641533211048965----5641876298415432752--789999999996555517----7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCCC----
Q ss_conf 2002222355323224332358700130620221025677754411048970640474210000001222210012----
Q gi|254780802|r 571 EPFKRLFTQGMVVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIK---- 646 (869)
Q Consensus 571 ~pf~~l~~~G~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~---- 646 (869)
-||+++++||||.|. .|+|||||+||||+|.|+|+
T Consensus 575 lPF~~V~LH~mVRDa-----------------------------------------~GRKMSKSLGNVIDPlDVI~Gisl 613 (995)
T KOG0432 575 LPFKEVLLHGLVRDA-----------------------------------------HGRKMSKSLGNVIDPLDVIDGISL 613 (995)
T ss_pred CCCHHEEECHHHCCC-----------------------------------------CCCCCCHHHCCCCCHHHHHCCCCH
T ss_conf 773411442121135-----------------------------------------245221100452488887523129
Q ss_pred --------------------------C-------CCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf --------------------------3-------4633566655301332111113432101145567788999997630
Q gi|254780802|r 647 --------------------------S-------YGADTARLFVLSDSPPDRDIIWSNKGVDSTYQFIQQIWRLIYNAKD 693 (869)
Q Consensus 647 --------------------------~-------yGaD~lRl~~~~~~~~~~d~~~s~~~i~~~~rfl~kl~~l~~~~~~ 693 (869)
. +|.|+|||.|++-...++|++++...+.++++|+||+||...++..
T Consensus 614 e~L~~~L~~gNLdp~Ev~~a~~gq~kdFPnGIpeCGtDALRFaL~s~~~~~~dInLDv~rv~g~r~FcNKlWNa~rF~l~ 693 (995)
T KOG0432 614 EKLHAKLLSGNLDPREVEKAKKGQKKDFPNGIPECGTDALRFALCSYTTQGRDINLDVLRVEGYRHFCNKLWNATRFALQ 693 (995)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999987279998999999877775367887433538999999871256764444189876689999999999999987
Q ss_pred CCC----CC--------CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-HHHHHHHHHHCCCCCCCCH----
Q ss_conf 246----67--------897569999999999999999988168899999999999-9999999862110002217----
Q gi|254780802|r 694 ELQ----TS--------STKKDISLISKSTKFLERIEENYQNLSFNKAVANIHELV-NVISKPLMEIAKKKSNADR---- 756 (869)
Q Consensus 694 ~~~----~~--------~~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai~~i~~f~-n~ls~~y~~~~k~~~~~~~---- 756 (869)
... +. ....|.||+++++.+++.+++++++|+|..|.++++.|. ++||+-|++..|.-...+.
T Consensus 694 ~lg~~~~p~~~~~~~~~~~~~d~WIlsrL~~av~~~~~~~~~~~f~~at~a~~~Fwl~~lCDVYlE~~Kp~l~~~~~~~~ 773 (995)
T KOG0432 694 RLGENFVPSPTEDLSGNESLVDEWILSRLAEAVEEVNESLEARNFHLATSALYAFWLYDLCDVYLEATKPLLWGDSEALA 773 (995)
T ss_pred HCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 43557888822356877410689999999999999985112001677899999999999989999985587628934544
Q ss_pred ---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC-----CCCEEECCCCC----C-CHHHHHCC
Q ss_conf ---99999999999999722343899999998289-----98355178866----5-96786037
Q gi|254780802|r 757 ---ISTIRYILEKLIIMMSPMIPHLAEECWQLLGN-----AGLVAQQKWPK----L-DPILEVNT 808 (869)
Q Consensus 757 ---~~~l~~vl~~l~~lLaPi~PhiaEEiw~~Lg~-----~~~i~~~~WP~----~-d~~~~~~~ 808 (869)
..+|+.+++.-++||||||||+||||||.|.. ..||+.++||. + |++++.+.
T Consensus 774 ~~a~~vL~~~ld~gLrll~PfMPFvtEelwqrlP~r~~~~~~si~va~yP~~~~~~~~~e~E~~~ 838 (995)
T KOG0432 774 YEARRVLYRCLDNGLRLLHPFMPFITEELWQRLPRRKGSKPASISVSPYPSSNELWRNEELESAF 838 (995)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCEEECCCCCHHCCCCCHHHHHHH
T ss_conf 66788999999988998457440308999985667889998723625886221144788999999
No 18
>KOG0433 consensus
Probab=100.00 E-value=0 Score=899.02 Aligned_cols=689 Identities=23% Similarity=0.351 Sum_probs=513.8
Q ss_pred CCHHHHHHHHHHHHHHCCCCCC-CCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 5689998999999998598036-767888838998077897898740047797789999997771898556768814020
Q gi|254780802|r 6 YSPQETDSIWQSAWYDSNIFKA-ENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFG 84 (869)
Q Consensus 6 y~~~~iE~kwq~~W~~~~~fe~-~~~~~~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~G 84 (869)
.|...-|++.++-|....+++. ..+.+++.|.++| |||.||||||+|+++|||+.||+.|+|++|+|+|||||||
T Consensus 30 ~n~~~r~~q~~k~~~~~~~~~~~l~~~~~~~F~L~d----anG~lhlghAlnKILkdiinr~~l~~g~~v~yvPGWDCHG 105 (937)
T KOG0433 30 FNSTGRIGQVIEVIQPPEILSSQLSDQQRVEFELKD----ANGNLHLGHALNKILKDIINRILLAQGKSALYVPGWDCHG 105 (937)
T ss_pred CCCCCCHHHHHHHHCCHHHHHHHHHHCCCCEEEEEC----CCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCC
T ss_conf 453233788998835627788887642687089864----8898016778989999999999997487442578987688
Q ss_pred HHHH-HHHHHH-------------CCCHHHHHHHHHHHHHHHHHHCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCE
Q ss_conf 5899-999980-------------99999999999999999999819176646982147735999999999999988963
Q gi|254780802|r 85 MPAE-NAAREH-------------NVHPKMWTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVI 150 (869)
Q Consensus 85 lPie-~~~~e~-------------~~~~~~~~~~~i~~~k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGli 150 (869)
|||| -+|... +...+.+|.+.|++|++.|+|||++.||.++|.|+||+|+..+..+|.+|++||||
T Consensus 106 LPIEs~Kals~l~~~~~~~spleiR~kAr~fA~~AIk~Q~e~F~r~gv~aDW~npY~T~~~~yeaaQL~iF~~lyekgLv 185 (937)
T KOG0433 106 LPIESTKALSSLTESEGSRTPLEIRAKARIFADEAIKKQMEAFRRWGVTADWENPYVTKSPSYEAAQLDIFAKLYEKGLV 185 (937)
T ss_pred CCHHHHHHHHHCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCEEECCHHHHHHHHHHHHHHHHCCCE
T ss_conf 73687787553212114678189999999999999999999988750110578830623807789999999999866613
Q ss_pred EECCEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 41221332147767677898984385334564322334752334303444544321002255432222210001455767
Q gi|254780802|r 151 VRKTAQVNWDPVEQTVLANEQVINGRGWRSDAPVEQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEG 230 (869)
Q Consensus 151 yrg~~pV~wcp~~~t~la~~Ev~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~i~~~~~ 230 (869)
||+.+||+|||..+||||+.|+||.+.+.+. .+|++++-. +.+..
T Consensus 186 yR~~KPVyWSpSSRTALAEaELEYn~nH~S~---------S~Y~~F~L~--------------------------~~S~~ 230 (937)
T KOG0433 186 YRSFKPVYWSPSSRTALAESELEYNDNHQST---------SAYFRFKLI--------------------------NFSSS 230 (937)
T ss_pred ECCCCCCEECCCCHHHHHHHHCCCCCCCCCE---------EEEEEEECC--------------------------CCCCC
T ss_conf 3057760136753125556431578677551---------489998636--------------------------77622
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCHHHHHCCH--HH----HHHHHHHHH-HHHHHHHHHHH
Q ss_conf 545355567777775136532001344432320033024432034541314--58----999886531-11124555430
Q gi|254780802|r 231 MEIRWEIVSNTIDQIEEILVYTTRPETIFGASFIAIAVDHSISEKLSCDNT--DI----KEFCDEEKQ-KGTSLSVLDKT 303 (869)
Q Consensus 231 ~~~~~~~~~~~~~~~~~l~~~TtrPeTl~g~~~i~v~~~~~~~~~~~~~~~--~~----~~~~~~~~~-~~~~~~~~~~~ 303 (869)
+..........|+++|||+||||+.+.++.++++..|.-.....+. .+ ...+.+... .+.+. .+.+.
T Consensus 231 -----~~~~~~~~~~iyaLVWTTTPWTlPsN~Ai~~n~~~~Yslv~~~~~~~~~~ylvas~L~~~fe~~~~~k~-~i~~t 304 (937)
T KOG0433 231 -----AHSEDSKIPQIYALVWTTTPWTLPSNNAISVNSAIQYSLVQFDNNPTSTFYLVASKLLEEFEKSSDRKC-KIVGT 304 (937)
T ss_pred -----CCCCCCCCCCEEEEEEECCCCCCCCCCEEEECCCCCEEEEEECCCCCCEEEEECCCHHHHHHHHCCCCE-EEEEE
T ss_conf -----125777667479999847875454664135323340589992367766599970010666653138643-45300
Q ss_pred CCCCCCCCCEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCC---CHH
Q ss_conf 25532378610377777415776311234545333222111346721101221035443210167765554222---112
Q gi|254780802|r 304 EKKGIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIFGCPFADQRDMDFAKKYGLPIIPIMKRSINHSQDIE---EGK 380 (869)
Q Consensus 304 ~~~~~~~G~~~~~P~~~~~~ipv~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~k~glpi~~v~~~~~~~~~~~~---~~~ 380 (869)
..+..+.|..|.||+.++...|++.|+||+++.|||+||+|||||++||.++.++|||+..++|+.|.++.... .+.
T Consensus 305 ~~g~~L~~~~Y~hpl~~~~~~P~l~g~hVT~~~GTGLVHTAPaHG~eDYlv~l~~gl~~~s~VD~~G~yT~ea~~~l~Gk 384 (937)
T KOG0433 305 VKGANLIGRRYKHPLHNELGLPILEGPHVTDTVGTGLVHTAPAHGFEDYLVAISKGLRVESFVDSRGCYTREAGHDLDGK 384 (937)
T ss_pred CCHHHCCCCEECCCCCCCCCCCCCCCCCEECCCCCCEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCC
T ss_conf 36223157623686765568864246633047566204417877748777776439976665577771340146412561
Q ss_pred HCCCC----------------CCCCCCHHHCCCCHH---------------HHHHHHHHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf 10123----------------344583000135646---------------65488899997404677520222111000
Q gi|254780802|r 381 AFSGD----------------GIMINSSFLDGMTNT---------------EALQAVMSHLEKQNIKNSPIGKRKINFRL 429 (869)
Q Consensus 381 ~~~~~----------------~~~~~~~~~~g~~~~---------------~~~~~i~~~l~~~~~~~~~~~~~~~~~~l 429 (869)
...++ ...+|+++++|++.+ +.+..+++.+....+.+.. +..+..-.+
T Consensus 385 ~VL~eG~k~vl~~l~~~iv~~sky~HsYPYDWRTKKPvIiRAseQWFi~~e~~k~~A~~al~~Vk~~P~~-~~~rl~~~~ 463 (937)
T KOG0433 385 EVLGEGQKIVLRLLNHDIVHVSKYVHSYPYDWRTKKPVIIRASEQWFIDVEEIKKRASMALDDVKVAPGD-SDLRLKQLV 463 (937)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCHHHEEEHHHHHHHHHHHHHHCEECCCC-HHHHHHHHH
T ss_conf 1232630769999865455201023258865455896599506155024775506899988512437863-088999997
Q ss_pred ---CCCCCCCCCCCCCCCCCCCCCCCCCEECCCCC------CCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC
Q ss_conf ---11122112322222342233346846347420------001110010002245421002456421101367644356
Q gi|254780802|r 430 ---RDWCISRQRSWGCPIPVIHCQKCGIVELPKED------LPVQLPEDLDFTLPGNPLENHPTWKKIFCVKCGSEALRE 500 (869)
Q Consensus 430 ---~DW~ISRqr~WG~piPv~~~~~~~~~~~~~~~------l~v~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~ 500 (869)
.+|||||||.||+|||++|....+.+.....- +..+-..|.||....+.+ .|.+.--..+....++.|.
T Consensus 464 ~~Rp~WCISRQR~WGvPIP~ly~k~~~~~l~ns~~~~h~~~~~eqeGsD~Ww~~~~eel--lpe~~~~e~~d~a~ey~kg 541 (937)
T KOG0433 464 TTRPSWCISRQRVWGVPIPALYDKNGGSYLSNSLIEWHAKLTREQEGSDVWWEIDVEEL--LPEEEVREIPDIASEYKKG 541 (937)
T ss_pred CCCCCCEEEECCCCCCCCEEEEECCCCCEEEHHHHHHHHHHHHHHHCCCCEEECCHHHH--CCHHHHCCCCHHHHHHCCC
T ss_conf 17974055321015885205785489835125899999999998718763276785671--7076630131168874368
Q ss_pred CCCCCCCCCCC--CCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCC-CCCCCCCCCCC
Q ss_conf 43234566643--3322335556544101356641143344014555443320234555320134787-32232002222
Q gi|254780802|r 501 TDTMDTFVDSS--WYYMRYMTPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIGY-IEIDEPFKRLF 577 (869)
Q Consensus 501 ~dvld~w~dS~--~~~~~~~~~~~~~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~g~-~~~~~pf~~l~ 577 (869)
+|+||+||||| |.... +. +.-.++|+++||.||- |+|+++++-+.. .....||++++
T Consensus 542 tDimDVWFDSGssWs~v~--------~~-----~~~~~aDv~LEG~DQ~-------rGWFQSsLLTsvA~q~kAPYk~vi 601 (937)
T KOG0433 542 TDIMDVWFDSGSSWSAVL--------DN-----EREHVADVYLEGVDQF-------RGWFQSSLLTSVAVQNKAPYKKVI 601 (937)
T ss_pred CCEEEEEECCCCCCEEEC--------CC-----CCCCCEEEEEECCHHC-------CHHHHHHHHHHHHHHCCCCCHHEE
T ss_conf 831666762888510004--------78-----8875000688441201-------237899999999872468723215
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCCCC------CCHH
Q ss_conf 3553232243323587001306202210256777544110489706404742100000012222100123------4633
Q gi|254780802|r 578 TQGMVVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKS------YGAD 651 (869)
Q Consensus 578 ~~G~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~~------yGaD 651 (869)
.||+++|| +|+|||||+||||+|..+++. ||||
T Consensus 602 vHGFtlDE-----------------------------------------~G~KMSKSlGNVidP~~vi~G~~k~payGaD 640 (937)
T KOG0433 602 VHGFTLDE-----------------------------------------NGNKMSKSLGNVVDPTMVTDGSLKQPAYGAD 640 (937)
T ss_pred EEEEEECC-----------------------------------------CCCCHHHCCCCCCCHHHHHCCCCCCCCCCCC
T ss_conf 62037667-----------------------------------------7542100226757889984775668875641
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCHHH---HHHHHHHHHHHHHHHHCCCCCCC--------CHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5666553013321111134321011---45567788999997630246678--------975699999999999999999
Q gi|254780802|r 652 TARLFVLSDSPPDRDIIWSNKGVDS---TYQFIQQIWRLIYNAKDELQTSS--------TKKDISLISKSTKFLERIEEN 720 (869)
Q Consensus 652 ~lRl~~~~~~~~~~d~~~s~~~i~~---~~rfl~kl~~l~~~~~~~~~~~~--------~~~D~~ils~~~~~i~~v~~~ 720 (869)
+||||++ .+....|+....+.+.. ..+.++.+.|++.++...+++.. ..+|+.+|..++.+.+++++.
T Consensus 641 ~LR~WVA-~s~~t~d~~iGp~il~qv~e~l~K~R~T~RfllGnl~d~~~~~~~~p~~dl~~iDqy~L~ql~~~~~~i~el 719 (937)
T KOG0433 641 GLRFWVA-GSENTGESKIGPKILDQVDEKLIKFRNTFRFLLGNLQDFDGKQVKFPLKDLRYIDQYMLQQLDAIVKRIIEL 719 (937)
T ss_pred CEEEEEE-CCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 0013442-355557510288999999999999975779885041124776551001032232499999999999999999
Q ss_pred HHHCCHHHHHHHHHHHH-HHHHHHHHHHCCCCCCCC---------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC-CC
Q ss_conf 88168899999999999-999999986211000221---------79999999999999972234389999999828-99
Q gi|254780802|r 721 YQNLSFNKAVANIHELV-NVISKPLMEIAKKKSNAD---------RISTIRYILEKLIIMMSPMIPHLAEECWQLLG-NA 789 (869)
Q Consensus 721 ~e~~~f~~ai~~i~~f~-n~ls~~y~~~~k~~~~~~---------~~~~l~~vl~~l~~lLaPi~PhiaEEiw~~Lg-~~ 789 (869)
|++|+|+++++.+..|+ ++||++|.++.|||.+++ .+.+|.+++..+++.++||+||++||+||.|. +.
T Consensus 720 Y~~Y~f~kVv~~lq~F~~~~lSa~YfdivKDRLY~~~~~s~~rrs~QttL~h~l~~l~~~iaPIlP~LaeEvwq~lP~~~ 799 (937)
T KOG0433 720 YNDYKFRKVVNDLQQFLQRNLSAFYFDIVKDRLYCDKVGSESRRSAQTTLHHLLHNLAHIISPILPHLAEEVWQHLPGSH 799 (937)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCC
T ss_conf 98515899999999999977667899987665305888868888999999999999999973431788999997487878
Q ss_pred CCEEECCCCCCCHHH
Q ss_conf 835517886659678
Q gi|254780802|r 790 GLVAQQKWPKLDPIL 804 (869)
Q Consensus 790 ~~i~~~~WP~~d~~~ 804 (869)
+-+....||..++.+
T Consensus 800 ~~~fr~k~~~l~s~~ 814 (937)
T KOG0433 800 EKIFRLKWEDLHSGL 814 (937)
T ss_pred CCCCCCCCCCCCHHH
T ss_conf 865224765246343
No 19
>KOG0434 consensus
Probab=100.00 E-value=0 Score=885.43 Aligned_cols=689 Identities=20% Similarity=0.308 Sum_probs=525.3
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCC--CCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 765689998999999998598036--767888838998077897898740047797789999997771898556768814
Q gi|254780802|r 4 RSYSPQETDSIWQSAWYDSNIFKA--ENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWD 81 (869)
Q Consensus 4 ~~y~~~~iE~kwq~~W~~~~~fe~--~~~~~~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d 81 (869)
+++||.+-|+|+.++|.+.+.|+. +-.+++|+|.|.||||+|+|.+|.||.++-||||++.||..|+|+.|.+++|||
T Consensus 6 ~n~nfp~eEEkvle~W~e~~aF~~slk~sk~rp~ftFyDGPPFATGlPHyGHiLa~TIKDiVtRya~~~G~hVeRRFGWD 85 (1070)
T KOG0434 6 ENFNFPKEEEKVLEFWREIDAFHTSLKLSKGRPKFTFYDGPPFATGLPHYGHILASTIKDIVTRYATQTGHHVERRFGWD 85 (1070)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCC
T ss_conf 45787445889999998753899999860799842613699655689862144544687777777430463102201665
Q ss_pred CCCHHHHHHH-----------------HHHCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCEECCCHHHHHHHHHHHHHH
Q ss_conf 0205899999-----------------98099999999999999999999819176646982147735999999999999
Q gi|254780802|r 82 AFGMPAENAA-----------------REHNVHPKMWTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDF 144 (869)
Q Consensus 82 ~~GlPie~~~-----------------~e~~~~~~~~~~~~i~~~k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L 144 (869)
|||||+|... .+.+.+||..+..+..+|+..+.|+|.|+|+++.|.||+|.|+++|||+|.+|
T Consensus 86 ~HGlPVE~eIDKkLgI~g~~dV~kmGI~kYN~ECR~IVmrYssEWe~tv~RlGRWidF~ndYkTmyp~FMESvWwvFkeL 165 (1070)
T KOG0434 86 THGLPVEYEIDKKLGITGRDDVMKMGIDKYNNECRKIVMRYSSEWEKTVERLGRWIDFDNDYKTLYPSFMESVWWVFKEL 165 (1070)
T ss_pred CCCCCCCEEECHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCEECHHHHHHHHHHHHHH
T ss_conf 68885010000220888789999970776758988999988788999998631404326885121678999999999999
Q ss_pred HHCCCEEECCEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 98896341221332147767677898984385334564322334752334303444544321002255432222210001
Q gi|254780802|r 145 MKHNVIVRKTAQVNWDPVEQTVLANEQVINGRGWRSDAPVEQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNW 224 (869)
Q Consensus 145 ~~kGliyrg~~pV~wcp~~~t~la~~Ev~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~ 224 (869)
++||++|||.++++||+.|.||||+.|-.+.+... ..|
T Consensus 166 ~~kglVYRG~kVMP~STac~TPLSNFEa~QNYKdV--------~DP---------------------------------- 203 (1070)
T KOG0434 166 HEKGLVYRGFKVMPYSTACTTPLSNFEAQQNYKDV--------PDP---------------------------------- 203 (1070)
T ss_pred HHCCCEECCEEEECCCCCCCCCCCCHHCCCCCCCC--------CCC----------------------------------
T ss_conf 86675531136310333358855000003676568--------997----------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCHHHHH---CCHHHHH-HHHHH-HH-HHHHHH
Q ss_conf 455767545355567777775136532001344432320033024432034541---3145899-98865-31-111245
Q gi|254780802|r 225 IGRSEGMEIRWEIVSNTIDQIEEILVYTTRPETIFGASFIAIAVDHSISEKLSC---DNTDIKE-FCDEE-KQ-KGTSLS 298 (869)
Q Consensus 225 i~~~~~~~~~~~~~~~~~~~~~~l~~~TtrPeTl~g~~~i~v~~~~~~~~~~~~---~~~~~~~-~~~~~-~~-~~~~~~ 298 (869)
...+.|++.. ++...+++|||+||||+++-+++|||+..|+..... ....+-+ ...+. +. +....+
T Consensus 204 -----av~v~F~li~---~~~~slvAWTTTPWTLPSNlal~Vnp~~~Yvki~dk~~~k~yil~esrl~~l~k~~~~~~~e 275 (1070)
T KOG0434 204 -----AVFVAFPLIG---DPNVSLVAWTTTPWTLPSNLALCVNPDFQYVKIKDKTTGKKYILMESRLGELYKNPKNDNYE 275 (1070)
T ss_pred -----EEEEEEECCC---CCCEEEEEEECCCCCCCCCEEEEECCCEEEEEEEECCCCEEEEEEHHHHHHHHCCCCCCCHH
T ss_conf -----0799731268---86112798745875576660478768727999984367758997298777773586432079
Q ss_pred HHHHHCCCCCCCCCEECCCCC------CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCC------CCCCCC
Q ss_conf 554302553237861037777------74157763112345453332221113467211012210354------432101
Q gi|254780802|r 299 VLDKTEKKGIYTGIHVKHPLN------PNVVIPVYIANFVFMNYGTGAIFGCPFADQRDMDFAKKYGL------PIIPIM 366 (869)
Q Consensus 299 ~~~~~~~~~~~~G~~~~~P~~------~~~~ipv~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~k~gl------pi~~v~ 366 (869)
+..+..+..|.|++|..++. .+....|+.++||+.+.|||+||+||++|+.||+++.+.|+ |.++ +
T Consensus 276 -iler~~G~~L~g~kYeplF~YF~~~~~~~aFrvl~d~yVt~~sGTGiVH~AP~FGe~Dy~~c~~~giI~~d~~~~cp-V 353 (1070)
T KOG0434 276 -ILERFQGAALVGLKYEPLFPYFAETFEEGAFRVLSDDYVTEDSGTGIVHQAPAFGEEDYRACVANGIIRKDSLPPCP-V 353 (1070)
T ss_pred -HHHHCCCCCCCCCCCCCCCHHHHHHHCCCCEEEECCCCEECCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCC-C
T ss_conf -99862653135864576656899873157369961572742788613650776570548999973951377878886-1
Q ss_pred CCCCCCCCCCCCH-HHC------------------CCCCCCCCCHHHCCCCHHHHH-HHH----------HHHHHHHCCC
Q ss_conf 6776555422211-210------------------123344583000135646654-888----------9999740467
Q gi|254780802|r 367 KRSINHSQDIEEG-KAF------------------SGDGIMINSSFLDGMTNTEAL-QAV----------MSHLEKQNIK 416 (869)
Q Consensus 367 ~~~~~~~~~~~~~-~~~------------------~~~~~~~~~~~~~g~~~~~~~-~~i----------~~~l~~~~~~ 416 (869)
|+.+.++.++..- +.+ .....+.|+.+++|++.+..+ +++ ...+-+++-.
T Consensus 354 De~G~~Tsev~dfaG~YVKDaDK~Ii~~lk~~g~lv~~~~i~HsYPFCWRSDTPLiYraVPsWFVrVk~~v~~ll~nn~~ 433 (1070)
T KOG0434 354 DESGLFTSEVTDFAGQYVKDADKLIIRSLKASGRLVKASQITHSYPFCWRSDTPLIYRAVPSWFVRVKNIVDQLLRNNMK 433 (1070)
T ss_pred CCCCCCCCCCCCCCCEEECCCHHHHHHHHHHCCCEEEEEEEEECCCCEECCCCHHHHHHCCHHHHHHHHHHHHHHHCCCC
T ss_conf 66776310054225524221439999999852746655656644673355897078763427651199779999851554
Q ss_pred CCCH----HHHHH-HH--HCCCCCCCCCCCCCCCCCCCCCCCCCCEECCC--CCCCHHHHCCCCCCCCCCCCCH-HHHHH
Q ss_conf 7520----22211-10--00111221123222223422333468463474--2000111001000224542100-24564
Q gi|254780802|r 417 NSPI----GKRKI-NF--RLRDWCISRQRSWGCPIPVIHCQKCGIVELPK--EDLPVQLPEDLDFTLPGNPLEN-HPTWK 486 (869)
Q Consensus 417 ~~~~----~~~~~-~~--~l~DW~ISRqr~WG~piPv~~~~~~~~~~~~~--~~l~v~~~~d~~~~~~~~~l~~-~~~~~ 486 (869)
..|. ..++. +| .+|||.|||+||||+|||+|..++...+.... .+|.... ++- .+.++. ..+.
T Consensus 434 t~WVP~~ikeKRF~NWL~nARDW~iSRnR~WGTPIpLWVSdD~eevVcigSi~eLEeLS--G~k----ItDlHRe~iD~- 506 (1070)
T KOG0434 434 THWVPQNIKEKRFANWLKNARDWNISRNRYWGTPIPLWVSDDYEEVVCIGSIKELEELS--GVK----ITDLHRESIDH- 506 (1070)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCEEEEECCHHHHHHHC--CCC----CHHHHHHHCCC-
T ss_conf 43477055677888887530312110035558885547736873579953288898840--973----11444541475-
Q ss_pred HHHHCCC--CCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 2110136--76443564323456664-33322335556544101356641143344014555443320234555320134
Q gi|254780802|r 487 KIFCVKC--GSEALRETDTMDTFVDS-SWYYMRYMTPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKK 563 (869)
Q Consensus 487 ~~~~~~~--~~~~~r~~dvld~w~dS-~~~~~~~~~~~~~~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~ 563 (869)
+..++. .+.++|..+|+|+||.| |++|++-..|.. |++.++.-||+|++-||.||+ |+|+|.|+.
T Consensus 507 -itIps~~gkg~l~Rv~eVfDCWFESGSMPYAq~HyPFe----nk~~fe~~fPadFIaEGlDQT-------RGWFYTL~V 574 (1070)
T KOG0434 507 -ITIPSKKGKGVLHRVSEVFDCWFESGSMPYAQRHYPFE----NKEEFEENFPADFIAEGLDQT-------RGWFYTLLV 574 (1070)
T ss_pred -EECCCCCCCCCEEHHHHHHHHHHCCCCCCCHHHCCCCC----CHHHHHHCCCHHHHHHCCCCC-------CCHHHHHHH
T ss_conf -65046788762121666765643158876202118853----367776449667665132002-------204557999
Q ss_pred CCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCC
Q ss_conf 787322-3200222235532322433235870013062022102567775441104897064047421000000122221
Q gi|254780802|r 564 IGYIEI-DEPFKRLFTQGMVVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPM 642 (869)
Q Consensus 564 ~g~~~~-~~pf~~l~~~G~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~ 642 (869)
+++..+ ..||++++++|+|+.+ +|+|||||+.|+.+|.
T Consensus 575 lsT~LF~kppfkNvIvnGlVLAe-----------------------------------------DG~KMSKrlkNYPdP~ 613 (1070)
T KOG0434 575 LSTALFGKPPFKNVIVNGLVLAE-----------------------------------------DGKKMSKRLKNYPDPS 613 (1070)
T ss_pred HHHHHCCCCCCHHEEEEEEEEEC-----------------------------------------CCHHHHHHHHCCCCHH
T ss_conf 99987179852221670168812-----------------------------------------1077766531598878
Q ss_pred CCCCCCCHHHHHHHHHHCCCC--CCCCCCCCCCHHHHHHHH-HHHHHHHH---HHHCC-------------CCCCCCHHH
Q ss_conf 001234633566655301332--111113432101145567-78899999---76302-------------466789756
Q gi|254780802|r 643 KVIKSYGADTARLFVLSDSPP--DRDIIWSNKGVDSTYQFI-QQIWRLIY---NAKDE-------------LQTSSTKKD 703 (869)
Q Consensus 643 ~~i~~yGaD~lRl~~~~~~~~--~~d~~~s~~~i~~~~rfl-~kl~~l~~---~~~~~-------------~~~~~~~~D 703 (869)
.+|++||||+||||+. .+|. .+.+.|+++|+.++-+-+ ..-||-.. .+... ...+.+..|
T Consensus 614 ~iinkYGADalRlYLI-nSPVvraE~LkFkeeGVrevvk~v~lPW~NsyrF~~qn~~~~~~~~g~~f~~~~~~~S~NvmD 692 (1070)
T KOG0434 614 LIINKYGADALRLYLI-NSPVVRAENLKFKEEGVREVVKDVLLPWYNSYRFLVQNAALLKKETGKDFVFDDSVTSSNVMD 692 (1070)
T ss_pred HHHHHHCCHHEEEEEE-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
T ss_conf 9887626202256651-584100433444211189998766125567789999888875024587666333346620578
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC--------HHHHHHHHHHHHHHHHCCCH
Q ss_conf 9999999999999999988168899999999999999999986211000221--------79999999999999972234
Q gi|254780802|r 704 ISLISKSTKFLERIEENYQNLSFNKAVANIHELVNVISKPLMEIAKKKSNAD--------RISTIRYILEKLIIMMSPMI 775 (869)
Q Consensus 704 ~~ils~~~~~i~~v~~~~e~~~f~~ai~~i~~f~n~ls~~y~~~~k~~~~~~--------~~~~l~~vl~~l~~lLaPi~ 775 (869)
+||++.++.++.-+++.|.+|++.+++..+..|++.|++||++..|+|..++ ++++|..+|..++++|+||+
T Consensus 693 rWI~a~~qslv~fv~~eM~~YrLytVvp~llkfiD~LTNwYiR~nRrrlkGe~G~~d~~~AL~~Lf~vL~t~~r~MaPfT 772 (1070)
T KOG0434 693 RWILASTQSLVGFVREEMDQYRLYTVVPRLLKFIDELTNWYIRFNRRRLKGENGEHDCHNALNVLFEVLFTLVRVMAPFT 772 (1070)
T ss_pred HHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHEEHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999999998875032415888999998754663012055525777617889999999999999999975885
Q ss_pred HHHHHHHHHHCC----------CCCCEEECCCCCCCHHHH
Q ss_conf 389999999828----------998355178866596786
Q gi|254780802|r 776 PHLAEECWQLLG----------NAGLVAQQKWPKLDPILE 805 (869)
Q Consensus 776 PhiaEEiw~~Lg----------~~~~i~~~~WP~~d~~~~ 805 (869)
||+||.+||.|. ...|||...+|.+++.+.
T Consensus 773 PF~tE~iyq~Lk~~~~~~~~~~~~~SVHfl~~P~~~~~~~ 812 (1070)
T KOG0434 773 PFFTEYIYQNLKKYIPIDKNEKSERSVHFLSYPTPKEELI 812 (1070)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHHHC
T ss_conf 4888999998873078533477654267763587325425
No 20
>KOG0437 consensus
Probab=100.00 E-value=0 Score=738.74 Aligned_cols=704 Identities=21% Similarity=0.312 Sum_probs=501.9
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCC----CCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 68999899999999859803676----78888389980778978987400477977899999977718985567688140
Q gi|254780802|r 7 SPQETDSIWQSAWYDSNIFKAEN----GKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDA 82 (869)
Q Consensus 7 ~~~~iE~kwq~~W~~~~~fe~~~----~~~~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~ 82 (869)
...+||+++|+.|+++++||++. +.+++|||++.||||+||.||+||+++-+..|+.+-|+||+|+|||||+||||
T Consensus 13 ~L~eiEk~~q~~W~~e~~fevda~~el~~~~~Kff~tfpyPYMNG~LHlGH~FslSK~eFa~~y~rL~Gk~vLfPfgFHC 92 (1080)
T KOG0437 13 SLLEIEKKYQKKWDTEKVFEVDAPNELQKSKPKFFVTFPYPYMNGRLHLGHAFSLSKVEFASGYERLQGKNVLFPFGFHC 92 (1080)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCEEEECCCCCCCCCEECCCEEEHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 99999999987640211100357021055667516843650217602123010023548888999845854774033354
Q ss_pred CCHHHHHHHH---------------------------------------------------------------------H
Q ss_conf 2058999999---------------------------------------------------------------------8
Q gi|254780802|r 83 FGMPAENAAR---------------------------------------------------------------------E 93 (869)
Q Consensus 83 ~GlPie~~~~---------------------------------------------------------------------e 93 (869)
||+||-..|. .
T Consensus 93 TGMPI~A~AdKLkrEie~fG~ppdf~~e~eeEv~eev~~~~~~~~~k~kgKKsk~aaK~g~~kYQw~IM~slGl~deEI~ 172 (1080)
T KOG0437 93 TGMPIKASADKLKREIELFGCPPDFPEEEEEEVEEEVKTEDAIEDVKFKGKKSKAAAKTGGQKYQWEIMESLGLPDEEIK 172 (1080)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCHHHHH
T ss_conf 79701775799999999738999981443145652156620112310035205777760464026999998099988813
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCEECCC--HHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCHHH
Q ss_conf 0999999999999999999998191766469821477--35999999999999988963412213321477676778989
Q gi|254780802|r 94 HNVHPKMWTYQNIKVMRKQLQSIGLSIDWSKDFATCD--VDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQ 171 (869)
Q Consensus 94 ~~~~~~~~~~~~i~~~k~~~~~lG~~~DW~r~y~T~d--~~y~~~v~w~f~~L~~kGliyrg~~pV~wcp~~~t~la~~E 171 (869)
++.+|..|..+|.--..++++|+|+-|||||+|.|+| |-|..||.|||.+|++.|.|..|+|-..|||.+++||.|||
T Consensus 173 ~F~d~~~WL~yFPpLc~~dlk~~gl~iDWRRSFITTDvNpYyDsFVRWQ~n~L~~~gkI~fgkRyTIyspkDgQpCmDHD 252 (1080)
T KOG0437 173 KFADPKHWLYYFPPLCERDLKRFGLGIDWRRSFITTDVNPYYDSFVRWQFNKLKEAGKIKFGKRYTIYSPKDGQPCMDHD 252 (1080)
T ss_pred CCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCC
T ss_conf 16671378884883778999984788642330130566545788999999988860785547603663678898553443
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 84385334564322334752334303444544321002255432222210001455767545355567777775136532
Q gi|254780802|r 172 VINGRGWRSDAPVEQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIRWEIVSNTIDQIEEILVY 251 (869)
Q Consensus 172 v~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~ 251 (869)
+..||++. |.+..-+ |++ .+...| ...++..+...+++++
T Consensus 253 R~sGEgV~---Pqeytli-----Kle-----------~le~~p---------------------~~l~~~~~~~v~lvAa 292 (1080)
T KOG0437 253 RASGEGVG---PQEYTLI-----KLE-----------VLEPFP---------------------KALSSLKDLRVYLVAA 292 (1080)
T ss_pred CCCCCCCC---CCEEEEE-----EEE-----------ECCCCH---------------------HHCCCCCCCEEEEEEH
T ss_conf 12388878---6347899-----998-----------414633---------------------3315533320365410
Q ss_pred EECCCCCCCCCEEEEECCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHH---------HHHCCCCCCCCCEECCCCCCCE
Q ss_conf 0013444323200330244320345413145899988653111124555---------4302553237861037777741
Q gi|254780802|r 252 TTRPETIFGASFIAIAVDHSISEKLSCDNTDIKEFCDEEKQKGTSLSVL---------DKTEKKGIYTGIHVKHPLNPNV 322 (869)
Q Consensus 252 TtrPeTl~g~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~G~~~~~P~~~~~ 322 (869)
|+|||||||+||++|.|+-+|+..-...+.++. ++.+........+.+ ..+..+.+++|.....|++...
T Consensus 293 TLRpetmyGQTnc~V~p~~~y~~fe~~~~~e~f-i~t~raa~NmsyQ~~tk~~g~~~~~~~i~G~~~iGa~l~aPlsv~~ 371 (1080)
T KOG0437 293 TLRPETMYGQTNCYVGPDIKYGGFEACNETEVF-IATERAARNMSYQKLTKERGVVSCLVTITGYDLIGAPLSAPLSVYE 371 (1080)
T ss_pred HCCCCCCCCCCCEEECCCCCEEEEEECCCCEEE-EEEHHHHHHCCHHHCCCCCCCCCCEEEECCHHHCCCCCCCCCHHHH
T ss_conf 127753357642388688537768833774278-8606877520034314557865511443343221774468500211
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHH----C---CCC-------CCCCCCCCCCCC---CCCCC--------
Q ss_conf 5776311234545333222111346721101221----0---354-------432101677655---54222--------
Q gi|254780802|r 323 VIPVYIANFVFMNYGTGAIFGCPFADQRDMDFAK----K---YGL-------PIIPIMKRSINH---SQDIE-------- 377 (869)
Q Consensus 323 ~ipv~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~----k---~gl-------pi~~v~~~~~~~---~~~~~-------- 377 (869)
.+.++|+.-|..+.|||+|.|||+.+|+||...+ | ||| +++|++.-.+.. +..+.
T Consensus 372 ~vy~LPMlTi~~~KGTGvVtsVpsdsPDDf~al~dL~kK~~lYg~~~ew~~~E~vPii~~~~fGdl~ae~vc~~lKiqs~ 451 (1080)
T KOG0437 372 RVYALPMLTILATKGTGVVTSVPSDSPDDFAALQDLKKKPELYGLKPEWVLFEIVPIIRIPGFGDLAAEVVCDELKIQSP 451 (1080)
T ss_pred EEEECCCEEEECCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCHHHCCCCCCCEEECCCCCHHHHHHHHHHHHCCCC
T ss_conf 01422300255057750478478998025677776641520037780230244520352366331669999998730581
Q ss_pred -------CHHHCC-----CCCCCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf -------112101-----23344583000135646654888999974046775202221110001112211232222234
Q gi|254780802|r 378 -------EGKAFS-----GDGIMINSSFLDGMTNTEALQAVMSHLEKQNIKNSPIGKRKINFRLRDWCISRQRSWGCPIP 445 (869)
Q Consensus 378 -------~~~~~~-----~~~~~~~~~~~~g~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~DW~ISRqr~WG~piP 445 (869)
+++... -+|+++ -+.+.|..+++++..|..++.+.+.... +..-..-.+||.-
T Consensus 452 ~dk~klaeaK~~~y~e~fy~g~ml-ig~y~G~KVe~~K~~i~~~li~~g~a~~-------y~EPEkqVmSRSG------- 516 (1080)
T KOG0437 452 NDKKKLAEAKKLAYLEGFYEGTML-IGKYKGEKVEDAKPKIKTDLIETGDALK-------YNEPEKQVMSRSG------- 516 (1080)
T ss_pred HHHHHHHHHHHHHHHHHHHCCEEE-EECCCCCCHHHHHHHHHHHHHHCCCCEE-------ECCCCHHHHCCCC-------
T ss_conf 167888876678898764036289-7144650077654678988885033256-------3375023313578-------
Q ss_pred CCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHH-----HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22333468463474200011100100022454210024564-----2110136764435643234566643332233555
Q gi|254780802|r 446 VIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTWK-----KIFCVKCGSEALRETDTMDTFVDSSWYYMRYMTP 520 (869)
Q Consensus 446 v~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~r~~dvld~w~dS~~~~~~~~~~ 520 (869)
++| .|. .+|+||..+|++.|+...-. +.+++....-+....|||..|.+|.-|. .
T Consensus 517 ----deC----------iVA-L~DQWYldYgE~eWKk~a~~cLe~l~~f~dEtR~~fE~tLdWL~~wacsRsyG-----L 576 (1080)
T KOG0437 517 ----DEC----------IVA-LCDQWYLDYGEAEWKKQAKECLENLNTFSDETRNGFEDTLDWLGQWACSRSYG-----L 576 (1080)
T ss_pred ----CCE----------EEE-ECCCHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC-----C
T ss_conf ----825----------999-41302212472989999999986553069788877888889987510120116-----7
Q ss_pred CCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCC-----C---CC---CCCCCCCCCCCCCCC-------
Q ss_conf 65441013566411433440145554433202345553201347-----8---73---223200222235532-------
Q gi|254780802|r 521 HAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKI-----G---YI---EIDEPFKRLFTQGMV------- 582 (869)
Q Consensus 521 ~~~~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~-----g---~~---~~~~pf~~l~~~G~v------- 582 (869)
+++.|||++ +++++..++++++.|+.+.|-...+. | .- ..++.+..+|.++-.
T Consensus 577 GTrlPWD~q---------yLvESLSDSTIYmAyYTvaHll~~d~~g~~~~plgi~~~QMtdeVwdYvF~~~~~~k~t~i~ 647 (1080)
T KOG0437 577 GTRLPWDEQ---------YLVESLSDSTIYMAYYTVAHLLHRDLYGKVEGPLGIKPDQMTDEVWDYVFLNEPYPKNTAIP 647 (1080)
T ss_pred CCCCCCCHH---------HHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCHHHHHHHHCCCCCCCCCCCC
T ss_conf 777887678---------88776031289999999999987764067766577894654789887865069987677840
Q ss_pred ---------CCCCCCCCC-CCCCEEECCCHHHC-----CCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCCCC
Q ss_conf ---------322433235-87001306202210-----256777544110489706404742100000012222100123
Q gi|254780802|r 583 ---------VHETYYQLE-GIKKKYLKPDEVIL-----RNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKS 647 (869)
Q Consensus 583 ---------~~~~~~~~~-~~~~~~~~p~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~~ 647 (869)
..+.|++.+ +.+|+++.|||+.+ .+++++..||+-...|++++.+++|||||.||+.++.+.|++
T Consensus 648 ~e~L~~lr~eF~Y~YPiDlrvsGKDLi~NHLtfflynHvAl~~~k~WPkgiraNGHLmLNsEKMSKSTGNfmTL~qaieK 727 (1080)
T KOG0437 648 EEALSNLRREFEYFYPIDLRVSGKDLIPNHLTFFLYNHVALFPEKKWPKGIRANGHLMLNSEKMSKSTGNFMTLEQAIEK 727 (1080)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEEHHHHCCCCCCCCCCCCCCEEEECCHHCCCCCCCEEEHHHHHHH
T ss_conf 99999999763100301344234213523136755400231540028653111766773312205456772459998987
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC------CC--CCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 4633566655301332111113432101145567788999997630------24--667897569999999999999999
Q gi|254780802|r 648 YGADTARLFVLSDSPPDRDIIWSNKGVDSTYQFIQQIWRLIYNAKD------EL--QTSSTKKDISLISKSTKFLERIEE 719 (869)
Q Consensus 648 yGaD~lRl~~~~~~~~~~d~~~s~~~i~~~~rfl~kl~~l~~~~~~------~~--~~~~~~~D~~ils~~~~~i~~v~~ 719 (869)
||||++|+.++.+++.-+|+||.+...... +-||++...-..+ .+ .+..+..|+-+.+++|.+|...++
T Consensus 728 Fgad~tRlalAdaGD~veDANF~ea~AnAa---ILRLyt~~ew~eEm~~~~s~LrtGp~~~FaDrvf~nemN~~i~~t~~ 804 (1080)
T KOG0437 728 FGADGTRLALADAGDGVEDANFVEANANAA---ILRLYTYVEWIEEMCENRSSLRTGPASTFADRVFENEMNALIAKTER 804 (1080)
T ss_pred HCCCCEEEEEECCCCCCCCCHHHHHCCCHH---HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 387520453202268743430666502379---99999999999999743776524862777899999899999999999
Q ss_pred HHHHCCHHHHHHH-HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEECCCC
Q ss_conf 9881688999999-999999999999862110002217999999999999997223438999999982899835517886
Q gi|254780802|r 720 NYQNLSFNKAVAN-IHELVNVISKPLMEIAKKKSNADRISTIRYILEKLIIMMSPMIPHLAEECWQLLGNAGLVAQQKWP 798 (869)
Q Consensus 720 ~~e~~~f~~ai~~-i~~f~n~ls~~y~~~~k~~~~~~~~~~l~~vl~~l~~lLaPi~PhiaEEiw~~Lg~~~~i~~~~WP 798 (869)
+|+.+.|++|+.. +++|.+. .++|-+++. .......+...++++++||+||+||+||.||+.+++++++....||
T Consensus 805 aye~~~fk~aLK~Gfyd~qaA-rD~Yrel~g---~~mh~dLv~r~ietqtlLLaPi~Ph~aeyiw~~~~~~~~~v~~~wP 880 (1080)
T KOG0437 805 AYEDTLFKDALKYGFYDLQAA-RDMYRELCG---EGMHRDLVFRFIETQTLLLAPICPHLAEYIWRTVLKKNFSVNVGWP 880 (1080)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHC---CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEECCCC
T ss_conf 988867999998505889988-999999704---5531899999999999987412527999999996168855426899
Q ss_pred CCCH
Q ss_conf 6596
Q gi|254780802|r 799 KLDP 802 (869)
Q Consensus 799 ~~d~ 802 (869)
.+++
T Consensus 881 ~~s~ 884 (1080)
T KOG0437 881 FVSP 884 (1080)
T ss_pred CCCC
T ss_conf 7897
No 21
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=0 Score=614.46 Aligned_cols=495 Identities=20% Similarity=0.287 Sum_probs=319.3
Q ss_pred CCEEEEECCCCCCCCCCCCHHHHHHH-HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 83899807789789874004779778-99999977718985567688140205899999980999999999999999999
Q gi|254780802|r 34 KKYFVLEMFPYPSGNIHMGHLRNYVI-GDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQ 112 (869)
Q Consensus 34 ~kf~i~~~pPy~nG~lHiGH~~~~t~-~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~ 112 (869)
.||+||.|+||+||.|||||+++.++ +||++||+||+|++|+|++|||+||+|||..|++.++.|+++++++.+.++++
T Consensus 3 ~k~~iTt~~Py~nG~lHiGH~~~~~l~aDi~aRy~R~~G~~v~~~~GtD~hG~~i~~~A~k~g~~p~e~~~~~~~~~~~~ 82 (558)
T PRK12268 3 MRILITSAWPYANGPLHLGHLAGSYLPADVYARYQRLKGNEVLFVSGSDEHGTPIELEAEKEGVSPQELADKYHEEHKED 82 (558)
T ss_pred CCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 51898479988889855231114198999999999837998797584064749999999985999999999999999999
Q ss_pred HHHCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 99819176646982147735999999999999988963412213321477676778989843853345643223347523
Q gi|254780802|r 113 LQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQVINGRGWRSDAPVEQRSLPQW 192 (869)
Q Consensus 113 ~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~pV~wcp~~~t~la~~Ev~~g~~~~~~~~v~~~~~~~~ 192 (869)
|++||++.|| .++|++|.+.+.|++.|.+|+++|+||++.++++|||.|++.|+|..| .|.|..|+++-.+.+
T Consensus 83 ~~~lgis~D~--f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~~fl~d~~v-~G~cP~c~~~~~~Gd---- 155 (558)
T PRK12268 83 FEKLGISYDN--YTRTTSPEHHELVQEFFLKLYENGYIEKKTIEQAYCPSDGRFLPDRYV-EGTCPYCGYEKARGD---- 155 (558)
T ss_pred HHHCCCCCCC--CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHH-CCCCCCCCCCCCCCC----
T ss_conf 9981983776--866898899999999999999889933013534368411231312331-540677687435673----
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCC
Q ss_conf 34303444544321002255432222210001455767545355567777775136532001344432320033024432
Q gi|254780802|r 193 FFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIRWEIVSNTIDQIEEILVYTTRPETIFGASFIAIAVDHSI 272 (869)
Q Consensus 193 ~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~TtrPeTl~g~~~i~v~~~~~~ 272 (869)
+ +.++
T Consensus 156 ----------------------------~---------------------------------------ce~c-------- 160 (558)
T PRK12268 156 ----------------------------Q---------------------------------------CDNC-------- 160 (558)
T ss_pred ----------------------------H---------------------------------------HHHC--------
T ss_conf ----------------------------2---------------------------------------5324--------
Q ss_pred CHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 03454131458999886531111245554302553237861037777741577631123454533322211134672110
Q gi|254780802|r 273 SEKLSCDNTDIKEFCDEEKQKGTSLSVLDKTEKKGIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIFGCPFADQRDM 352 (869)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~P~~~~~~ipv~~~~~V~~~~GTG~V~~~P~h~~~D~ 352 (869)
+..+.....++|.. .-.|+
T Consensus 161 ---------------------------------g~~~~~~dli~p~~--------------~~~g~-------------- 179 (558)
T PRK12268 161 ---------------------------------GALLDPTDLINPRS--------------KISGS-------------- 179 (558)
T ss_pred ---------------------------------CCCCCHHHHCCCCC--------------CCCCC--------------
T ss_conf ---------------------------------76478577248856--------------77899--------------
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHH----HH
Q ss_conf 12210354432101677655542221121012334458300013564665488899997404677520222111----00
Q gi|254780802|r 353 DFAKKYGLPIIPIMKRSINHSQDIEEGKAFSGDGIMINSSFLDGMTNTEALQAVMSHLEKQNIKNSPIGKRKIN----FR 428 (869)
Q Consensus 353 ~~~~k~glpi~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~----~~ 428 (869)
++ .+.......+...+..+.+.+++..... ..+..++.+. -.
T Consensus 180 --------~~-------------------------e~~~~~~~f~~l~~~~~~l~~~~~~~~~-~p~~~~~~~~~~l~~~ 225 (558)
T PRK12268 180 --------TP-------------------------EFRETEHFFLDLPAFQEALRKWIESGTD-WPPNVLNFTLNWLKEG 225 (558)
T ss_pred --------CC-------------------------EEEECCCEEECCHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHCC
T ss_conf --------44-------------------------4773453021418778999999853887-7889999999998633
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 01112211232222234223334684634742000111001000224542100245642110136764435643234566
Q gi|254780802|r 429 LRDWCISRQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTWKKIFCVKCGSEALRETDTMDTFV 508 (869)
Q Consensus 429 l~DW~ISRqr~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~dvld~w~ 508 (869)
|+|||||||++||+|||++.+++. .+. +|+..+.+.+.....| +...+. ..++.+.|.
T Consensus 226 l~D~~ISR~~~WGipiP~~~~~~~-~iy-------------VW~Da~~~yis~~~~~----~~~~~~----~~~~~~~W~ 283 (558)
T PRK12268 226 LKPRAITRDLPWGIPIPFEGAEGK-VFY-------------VWFDAPIGYISATKEW----AKRKGD----PEAWKEFWL 283 (558)
T ss_pred CCCCCCCCCCCCCEECCCCCCCCC-EEE-------------EECCCCCCHHHHHHHH----HHCCCC----HHHHHHHCC
T ss_conf 756545553878657885556896-798-------------8657872203433654----541698----567987278
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 64333223355565441013566411433440145554433202345553201347873223200222235532322433
Q gi|254780802|r 509 DSSWYYMRYMTPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIGYIEIDEPFKRLFTQGMVVHETYY 588 (869)
Q Consensus 509 dS~~~~~~~~~~~~~~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~g~~~~~~pf~~l~~~G~v~~~~~~ 588 (869)
+|..- .+++-|.|-+.- ++-+|...|+..+. ....| +.++.||++
T Consensus 284 ~~~~~------------------------~~~f~GkDii~F---H~v~wpa~l~a~~~-~~~lP-~~i~~~g~~------ 328 (558)
T PRK12268 284 DSDTK------------------------YYYFIGKDNIPF---HSVIWPAMLLGSGE-PYKLP-TAIVSSEYL------ 328 (558)
T ss_pred CCCCE------------------------EEEECCCCCCHH---HHHHHHHHHHHCCC-CCCCC-CEEEEEEEE------
T ss_conf 99842------------------------776436665434---78799999973379-87788-778775568------
Q ss_pred CCCCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 23587001306202210256777544110489706404742100000012222100123463356665530133211111
Q gi|254780802|r 589 QLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDII 668 (869)
Q Consensus 589 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~~~~~~~~~~d~~ 668 (869)
..+|+|||||+||+|+|.+++++||||+||+|+++.++.++|.+
T Consensus 329 ------------------------------------~~~G~KmSKS~Gnvi~p~~~i~~yg~D~lRy~L~~~~~~~~D~~ 372 (558)
T PRK12268 329 ------------------------------------TYEGQKFSKSRGWGIWVDDALERLPPDYLRYYLAANAPENSDTD 372 (558)
T ss_pred ------------------------------------EECCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCC
T ss_conf ------------------------------------74684114557887798999987490777899885488888888
Q ss_pred CCCCCHHHH---------HHHHHHHHHHHHHHHCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 343210114---------55677889999976302466---789756999999999999999998816889999999999
Q gi|254780802|r 669 WSNKGVDST---------YQFIQQIWRLIYNAKDELQT---SSTKKDISLISKSTKFLERIEENYQNLSFNKAVANIHEL 736 (869)
Q Consensus 669 ~s~~~i~~~---------~rfl~kl~~l~~~~~~~~~~---~~~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai~~i~~f 736 (869)
||.+.+... .|+++|+..++....++..+ ..+..|+|+++++++++++++++|++|+|++|++.+++|
T Consensus 373 fs~~~~~~~~N~dL~~~~gNl~~R~~~~~~k~~~g~~p~~~~~~~~d~~l~~~~~~~~~~v~~~~e~~~~~~Al~~i~~~ 452 (558)
T PRK12268 373 FTWEEFIRRVNSELADKYGNLVNRVLSFIEKNFGGEVPEPGELGEEDEELLEKFQELFKEVGEHYEAIEFKKALEEIMEL 452 (558)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 79999999999999999999999999999986589789876798565999999999999999999751799999999999
Q ss_pred HHHHHHHHHHHCCCC---CCCC-HHHH---HHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEECCCCC
Q ss_conf 999999998621100---0221-7999---9999999999972234389999999828998355178866
Q gi|254780802|r 737 VNVISKPLMEIAKKK---SNAD-RIST---IRYILEKLIIMMSPMIPHLAEECWQLLGNAGLVAQQKWPK 799 (869)
Q Consensus 737 ~n~ls~~y~~~~k~~---~~~~-~~~~---l~~vl~~l~~lLaPi~PhiaEEiw~~Lg~~~~i~~~~WP~ 799 (869)
+...+++..+....+ .+.+ ..++ +.++++.+++||+||||++||+||++||-++ .....|+.
T Consensus 453 ~~~~N~y~~~~~PW~l~k~d~~~~~~vl~~~l~~lr~~~ilL~P~mP~~se~i~~~Lg~~~-~~~~~w~~ 521 (558)
T PRK12268 453 ARLANKYLNEKAPWKLAKTDPERAAAVLYTALNLVKLLAILLYPFLPFSAEKIWEMLGLPN-IEKLSWEE 521 (558)
T ss_pred HHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCC-CCCCCHHH
T ss_conf 9999999983798543168999999999999999999999986740399999999849997-75555144
No 22
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=0 Score=606.82 Aligned_cols=454 Identities=26% Similarity=0.405 Sum_probs=341.9
Q ss_pred CCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 83899807789789874004779778999999777189855676881402058999999809999999999999999999
Q gi|254780802|r 34 KKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQL 113 (869)
Q Consensus 34 ~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~~ 113 (869)
++|+|+.||||+||.||||||++|+.+||++||+||+|++|+|++|+|+||+||+.+|++.+++|.+++.++.+.++++|
T Consensus 1 k~~~it~p~Py~nG~lHlGHa~~~~~~Dv~~Ry~R~~G~~v~~~~GtD~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~ 80 (512)
T PRK11893 1 KKFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIERKAEEAGISPQELADRNSASFKRLW 80 (512)
T ss_pred CCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 97899689998899734463587999999999999559970746871775199999999859999999999999999999
Q ss_pred HHCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCHHHHHCC-----CCCCCCCCCCCCC
Q ss_conf 98191766469821477359999999999999889634122133214776767789898438-----5334564322334
Q gi|254780802|r 114 QSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQVING-----RGWRSDAPVEQRS 188 (869)
Q Consensus 114 ~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~pV~wcp~~~t~la~~Ev~~g-----~~~~~~~~v~~~~ 188 (869)
+++|++.| +-.+|+|+.+.+.++..|.+|+++|+||++..+++|||.|++-+.+.++..+ .|..|+.+++.++
T Consensus 81 ~~l~i~~D--~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~c~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~ 158 (512)
T PRK11893 81 EALNISYD--DFIRTTDERHKEAVQEIFQRLLANGDIYLGKYSGWYCVRCEEFKTESEARLGEDGCPRCPIHGKPVEWVE 158 (512)
T ss_pred HHCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCEEEE
T ss_conf 98099888--7877998799999999999997679774324443226886444577772366578865555799776872
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEC
Q ss_conf 75233430344454432100225543222221000145576754535556777777513653200134443232003302
Q gi|254780802|r 189 LPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIRWEIVSNTIDQIEEILVYTTRPETIFGASFIAIAV 268 (869)
Q Consensus 189 ~~~~~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~TtrPeTl~g~~~i~v~~ 268 (869)
..+|||+++++.+.+.+.+.
T Consensus 159 ~~~~flkl~~~~~~l~~~~~------------------------------------------------------------ 178 (512)
T PRK11893 159 EESYFFRLSKYQDKLLELYE------------------------------------------------------------ 178 (512)
T ss_pred CCCCEECCHHHHHHHHHHHH------------------------------------------------------------
T ss_conf 47611205054677999972------------------------------------------------------------
Q ss_pred CCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 44320345413145899988653111124555430255323786103777774157763112345453332221113467
Q gi|254780802|r 269 DHSISEKLSCDNTDIKEFCDEEKQKGTSLSVLDKTEKKGIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIFGCPFAD 348 (869)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~P~~~~~~ipv~~~~~V~~~~GTG~V~~~P~h~ 348 (869)
.+|- ++. |
T Consensus 179 ----------------------------------------------~~~~------------~~~-----------p--- 186 (512)
T PRK11893 179 ----------------------------------------------ANPD------------FIQ-----------P--- 186 (512)
T ss_pred ----------------------------------------------CCCC------------CCC-----------C---
T ss_conf ----------------------------------------------4986------------518-----------6---
Q ss_pred CCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 21101221035443210167765554222112101233445830001356466548889999740467752022211100
Q gi|254780802|r 349 QRDMDFAKKYGLPIIPIMKRSINHSQDIEEGKAFSGDGIMINSSFLDGMTNTEALQAVMSHLEKQNIKNSPIGKRKINFR 428 (869)
Q Consensus 349 ~~D~~~~~k~glpi~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 428 (869)
...+..+..++. ..
T Consensus 187 ---------------------------------------------------~~~~~~~~~~l~---------------~~ 200 (512)
T PRK11893 187 ---------------------------------------------------ESRRNEVINFVK---------------SG 200 (512)
T ss_pred ---------------------------------------------------HHHHHHHHHHHH---------------CC
T ss_conf ---------------------------------------------------999999999985---------------77
Q ss_pred CCCCCCCCCC-CCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 0111221123-222223422333468463474200011100100022454210024564211013676443564323456
Q gi|254780802|r 429 LRDWCISRQR-SWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTWKKIFCVKCGSEALRETDTMDTF 507 (869)
Q Consensus 429 l~DW~ISRqr-~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~dvld~w 507 (869)
++|||||||+ .||+|+|.- +..++++|
T Consensus 201 l~d~~ISR~~~~WGi~vP~~----------------------------------------------------~~~~~yvW 228 (512)
T PRK11893 201 LKDLSISRTNFDWGIPVPGD----------------------------------------------------PKHVIYVW 228 (512)
T ss_pred CCCCCEECCCCCCCCCCCCC----------------------------------------------------CCCCEEEH
T ss_conf 87661525678789988888----------------------------------------------------88620112
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 66433322335556544101356641143344014555443320234555320134787322320022223553232243
Q gi|254780802|r 508 VDSSWYYMRYMTPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIGYIEIDEPFKRLFTQGMVVHETY 587 (869)
Q Consensus 508 ~dS~~~~~~~~~~~~~~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~g~~~~~~pf~~l~~~G~v~~~~~ 587 (869)
|||.+.|+..+... .+.+.+.++.|||.|+...|.|.+.-|..+ |...+...|. . .+++++.||++.
T Consensus 229 fda~~~y~s~~~~~--~~~~~~~~~~~w~~~vh~~G~Dii~fH~~~---~~a~l~~~~~---~-~p~~~~~hg~l~---- 295 (512)
T PRK11893 229 FDALLNYLTALGYD--EPDLEELFRKYWPADVHLIGKDILRFHAVY---WPAFLMAAGL---P-LPKRVFAHGFLT---- 295 (512)
T ss_pred HHHHHHHHHHHCCC--CCCCHHHHHHCCCCEEEECCCCCCCHHHHH---HHHHHHHCCC---C-CCCCCCCCEEEE----
T ss_conf 53135567764588--765647898448750432366512013888---9999986699---9-886343111488----
Q ss_pred CCCCCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 32358700130620221025677754411048970640474210000001222210012346335666553013321111
Q gi|254780802|r 588 YQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDI 667 (869)
Q Consensus 588 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~~~~~~~~~~d~ 667 (869)
.+|+|||||+||+|+|.+++++||||++|+|+++.++.++|.
T Consensus 296 --------------------------------------~~G~KmSKS~Gn~I~~~d~l~~yg~D~lR~~L~~~~p~~~D~ 337 (512)
T PRK11893 296 --------------------------------------NDGQKMSKSLGNVIDPFDLVDKFGVDAVRYFLLREIPFGQDG 337 (512)
T ss_pred --------------------------------------ECCCEECCCCCCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCC
T ss_conf --------------------------------------757150134787589999999859504028776328877787
Q ss_pred CCCCCCHHHHHH--HHHHHHHHHHHHH-------CCCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 134321011455--6778899999763-------0246---678975699999999999999999881688999999999
Q gi|254780802|r 668 IWSNKGVDSTYQ--FIQQIWRLIYNAK-------DELQ---TSSTKKDISLISKSTKFLERIEENYQNLSFNKAVANIHE 735 (869)
Q Consensus 668 ~~s~~~i~~~~r--fl~kl~~l~~~~~-------~~~~---~~~~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai~~i~~ 735 (869)
+|+++.+....| +.++++|++.... +... ......|.|+++++++++++++++||+|+|++|++.+++
T Consensus 338 ~Fs~~~f~~~~N~~l~~~~gNl~~R~~~~~~~~~~~~~p~~~~~~~~d~~~~~~~~~~~~~v~~~~e~~~~~~a~~~i~~ 417 (512)
T PRK11893 338 DFSEEAFINRINADLANDLGNLLSRTLSMIAKYFDGKVPEPGEFSEADAALLEKADAALEQVREAMDNFAFHKALEAILE 417 (512)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87899999897589999999999999999987517878886658876899999999999999999971259999999999
Q ss_pred HHHHHHHHHHHHCCCCC---CCC----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC
Q ss_conf 99999999986211000---221----79999999999999972234389999999828998
Q gi|254780802|r 736 LVNVISKPLMEIAKKKS---NAD----RISTIRYILEKLIIMMSPMIPHLAEECWQLLGNAG 790 (869)
Q Consensus 736 f~n~ls~~y~~~~k~~~---~~~----~~~~l~~vl~~l~~lLaPi~PhiaEEiw~~Lg~~~ 790 (869)
++...+++.......+. +.+ ...++.++++.+++||+|||||+||+||+.||-++
T Consensus 418 ~~~~~N~y~~~~~PW~l~k~d~~~~~~il~~~~~~~~~l~ill~P~~P~~ae~l~~~Lg~~~ 479 (512)
T PRK11893 418 LAAEANKYIDEQAPWSLAKTDPERLATVLYTLLESLRIIAVLLQPVMPELSAKILDQLGLEE 479 (512)
T ss_pred HHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCC
T ss_conf 99999999884787533158999999999999999999999985843599999999849998
No 23
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=0 Score=582.01 Aligned_cols=455 Identities=24% Similarity=0.378 Sum_probs=358.1
Q ss_pred CCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 88389980778978987400477977899999977718985567688140205899999980999999999999999999
Q gi|254780802|r 33 KKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQ 112 (869)
Q Consensus 33 ~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~ 112 (869)
+++|+||.|+||+||.||+||+++++++|+++||+||+||+|+|+.|+|+||+||+..|++.|++|++++.++.+.++++
T Consensus 3 ~k~~~iTt~ipY~Ng~~HiGHa~~~i~aDv~aRy~R~~G~~v~f~~GtDehG~kI~~~A~~~g~tP~e~~d~~~~~~~~~ 82 (644)
T PRK12267 3 KKTFYITTPIYYPSGKLHIGHAYTTIAADVLARYKRLQGYDVFFLTGTDEHGQKIQQKAEEAGITPQEYVDEISAGFKDL 82 (644)
T ss_pred CCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 99989968998889985545348789999999999846997598487687529999999985999999999999999999
Q ss_pred HHHCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCHHHHHC-CCCCCCCCCCCCCCCCC
Q ss_conf 99819176646982147735999999999999988963412213321477676778989843-85334564322334752
Q gi|254780802|r 113 LQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQVIN-GRGWRSDAPVEQRSLPQ 191 (869)
Q Consensus 113 ~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~pV~wcp~~~t~la~~Ev~~-g~~~~~~~~v~~~~~~~ 191 (869)
|++||++.| +-.+|+++.+.+.+|+.|.+|+++|+||++.+.+.|||.|++.+++.++++ |.|..|+.+++..+..+
T Consensus 83 ~~~l~Is~D--~f~rTt~~~h~~~vq~if~~L~~kG~Iy~~~~~~~Yc~~ce~f~~~~~l~d~g~cp~cg~~~e~~~ee~ 160 (644)
T PRK12267 83 WDKLDISYD--KFIRTTDERHKKVVQKVFEKLYDQGDIYLGEYEGWYCVSCETFFTESQLVDGGKCPDSGHEVELVKEES 160 (644)
T ss_pred HHHCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCEEECCCC
T ss_conf 998699678--785489889999999999999988997866551232587543336244045786877899764640565
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCC
Q ss_conf 33430344454432100225543222221000145576754535556777777513653200134443232003302443
Q gi|254780802|r 192 WFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIRWEIVSNTIDQIEEILVYTTRPETIFGASFIAIAVDHS 271 (869)
Q Consensus 192 ~~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~TtrPeTl~g~~~i~v~~~~~ 271 (869)
|||+++.+.+.|++.++
T Consensus 161 yffkL~~~~~~L~~~~~--------------------------------------------------------------- 177 (644)
T PRK12267 161 YFFRMSKYADRLLEFYE--------------------------------------------------------------- 177 (644)
T ss_pred EEEEHHHHHHHHHHHHH---------------------------------------------------------------
T ss_conf 14434667899999996---------------------------------------------------------------
Q ss_pred CCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 20345413145899988653111124555430255323786103777774157763112345453332221113467211
Q gi|254780802|r 272 ISEKLSCDNTDIKEFCDEEKQKGTSLSVLDKTEKKGIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIFGCPFADQRD 351 (869)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~P~~~~~~ipv~~~~~V~~~~GTG~V~~~P~h~~~D 351 (869)
.|| +. | .|+
T Consensus 178 -------------------------------------------~~p---~~---i------~p~---------------- 186 (644)
T PRK12267 178 -------------------------------------------ENP---DF---I------QPE---------------- 186 (644)
T ss_pred -------------------------------------------CCC---CE---E------CCH----------------
T ss_conf -------------------------------------------099---74---6------762----------------
Q ss_pred CHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCC
Q ss_conf 01221035443210167765554222112101233445830001356466548889999740467752022211100011
Q gi|254780802|r 352 MDFAKKYGLPIIPIMKRSINHSQDIEEGKAFSGDGIMINSSFLDGMTNTEALQAVMSHLEKQNIKNSPIGKRKINFRLRD 431 (869)
Q Consensus 352 ~~~~~k~glpi~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~D 431 (869)
. .+.++++.+.+ -.|+|
T Consensus 187 ---~----------------------------------------------~~ne~~~~~l~--------------~gL~D 203 (644)
T PRK12267 187 ---S----------------------------------------------RKNEMLNNFIK--------------PGLED 203 (644)
T ss_pred ---H----------------------------------------------HHHHHHHHHHH--------------CCCCC
T ss_conf ---5----------------------------------------------88799999985--------------77855
Q ss_pred CCCCCCC-CCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1221123-222223422333468463474200011100100022454210024564211013676443564323456664
Q gi|254780802|r 432 WCISRQR-SWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTWKKIFCVKCGSEALRETDTMDTFVDS 510 (869)
Q Consensus 432 W~ISRqr-~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~dvld~w~dS 510 (869)
|||||++ +||+|+|. .+ ..++.+|||+
T Consensus 204 ~~ISR~~~~WGipvP~--d~--------------------------------------------------~~v~YVWfDA 231 (644)
T PRK12267 204 LAVSRTSFDWGIPVPS--DP--------------------------------------------------KHVVYVWIDA 231 (644)
T ss_pred CCEECCCCCCCCCCCC--CC--------------------------------------------------CEEEEEEECC
T ss_conf 4302477888885789--87--------------------------------------------------6079984224
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 33322335556544101356641143344014555443320234555320134787322320022223553232243323
Q gi|254780802|r 511 SWYYMRYMTPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIGYIEIDEPFKRLFTQGMVVHETYYQL 590 (869)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~g~~~~~~pf~~l~~~G~v~~~~~~~~ 590 (869)
.+.|+...++... +.+.++.|||+|+.+.|.|-..-| +-+|...|+..|. +++++++.||++.
T Consensus 232 ~i~Yisa~g~~~~---~~~~~~~~Wp~~~h~iGkDii~FH---~i~wpamL~~~~~----~~p~~v~~hg~~~------- 294 (644)
T PRK12267 232 LLNYITALGYGSD---DDELFMKFWPADVHLVGKDILRFH---AIYWPIMLMALDL----PLPKHLFAHGWWL------- 294 (644)
T ss_pred CCCHHHHHCCCCC---CCHHHHHHCCHHHCCCCCCHHHHH---HHHHHHHHHHCCC----CCCCEEECCCEEE-------
T ss_conf 3003434138621---226677637313302685532366---8899999997699----9864451044187-------
Q ss_pred CCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 58700130620221025677754411048970640474210000001222210012346335666553013321111134
Q gi|254780802|r 591 EGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDIIWS 670 (869)
Q Consensus 591 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~~~~~~~~~~d~~~s 670 (869)
.+|+|||||+||+|+|.+++++||+|++|+|+++..+.++|.+||
T Consensus 295 -----------------------------------~~g~KmSKS~Gn~i~~~~~~~~~g~D~lRyyl~~~~~~~~D~dfs 339 (644)
T PRK12267 295 -----------------------------------MKDGKMSKSKGNVVDPEELVDRYGLDALRYYLLREVPFGSDGDFS 339 (644)
T ss_pred -----------------------------------CCCCEECCCCCCEECHHHHHHHCCCCCEEEEEEECCCCCCCCCCC
T ss_conf -----------------------------------178600553684223799987559404364644448878777789
Q ss_pred CCCHH---------HHHHHHHHHHHHHHHHHCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 32101---------1455677889999976302466---78975699999999999999999881688999999999999
Q gi|254780802|r 671 NKGVD---------STYQFIQQIWRLIYNAKDELQT---SSTKKDISLISKSTKFLERIEENYQNLSFNKAVANIHELVN 738 (869)
Q Consensus 671 ~~~i~---------~~~rfl~kl~~l~~~~~~~~~~---~~~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai~~i~~f~n 738 (869)
++.+. ...|+++|+..++....++.-+ .....|..++..+..+++.+.++|++++|++|++.+++++.
T Consensus 340 ~~~f~~r~NsdL~n~lGNl~~R~~~~~~k~~~g~vp~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~Al~~i~~l~~ 419 (644)
T PRK12267 340 PEAFVERINSDLANDLGNLLNRTVAMINKYFDGEIPAYKGVTEFDEELLALAKETLKKYEEAMEALQFSRALEELWKLIS 419 (644)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 99999998899887777899999999887518867888778745699999999999999999971269999999999999
Q ss_pred HHHHHHHHHCCCCC-----CCCH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC
Q ss_conf 99999986211000-----2217----9999999999999972234389999999828998
Q gi|254780802|r 739 VISKPLMEIAKKKS-----NADR----ISTIRYILEKLIIMMSPMIPHLAEECWQLLGNAG 790 (869)
Q Consensus 739 ~ls~~y~~~~k~~~-----~~~~----~~~l~~vl~~l~~lLaPi~PhiaEEiw~~Lg~~~ 790 (869)
..++|..+...... ..++ ..++.++++.+.+||+||||.+|+++|++||-+.
T Consensus 420 ~~N~Yi~~~~PW~L~K~~~~~~~~~~vl~~~l~~~r~l~ilL~P~mP~~a~ki~~~Lgl~~ 480 (644)
T PRK12267 420 RANKYIDETAPWVLAKDEGKKERLGAVMAHLAESLRKVAVLLSPFMPETSKKIAEQLGLEI 480 (644)
T ss_pred HHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCC
T ss_conf 9999888578876636866299999999999999999999706836579999999819997
No 24
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=0 Score=564.74 Aligned_cols=474 Identities=22% Similarity=0.297 Sum_probs=326.8
Q ss_pred CCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 83899807789789874004779778999999777189855676881402058999999809999999999999999999
Q gi|254780802|r 34 KKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQL 113 (869)
Q Consensus 34 ~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~~ 113 (869)
++|+||.|+||+||.|||||+++++.+|++|||+||+|++|+|+.|+|+||+||+.+|++.+++|++++.++.+.++++|
T Consensus 2 k~~~iTt~ipY~Ng~~HiGH~~~~i~aDv~aRy~Rl~G~~v~f~~GtDeHG~~i~~~A~~~g~tp~e~~d~~~~~~~~~~ 81 (666)
T PRK00133 2 RKILVTCALPYANGPIHLGHLLEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRDF 81 (666)
T ss_pred CCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 87798179878889843124676999999999998369954984742788489999999859999999999999999999
Q ss_pred HHCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98191766469821477359999999999999889634122133214776767789898438533456432233475233
Q gi|254780802|r 114 QSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQVINGRGWRSDAPVEQRSLPQWF 193 (869)
Q Consensus 114 ~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~pV~wcp~~~t~la~~Ev~~g~~~~~~~~v~~~~~~~~~ 193 (869)
++||++.| +-++|+++.+.+.+|+.|.+|+++|+||++.+++.|||.|++.|+|..| .|.|..|+++....+.
T Consensus 82 ~~l~Is~D--~f~rTt~~~h~~~vq~~f~~l~~~G~iy~~~~~~~Yc~~~e~fl~Dr~V-~GtCP~C~~~~~~GD~---- 154 (666)
T PRK00133 82 AGFGISFD--NYGSTHSEENRELAQEIYLKLKENGYIYERTIEQLYDPEKGMFLPDRFV-KGTCPKCGAEDQYGDN---- 154 (666)
T ss_pred HHCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCEE-EEECCCCCCHHHCCCC----
T ss_conf 98399578--7857898899999999999999789989740355566875655254234-2025777871204874----
Q ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCC
Q ss_conf 43034445443210022554322222100014557675453555677777751365320013444323200330244320
Q gi|254780802|r 194 FKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIRWEIVSNTIDQIEEILVYTTRPETIFGASFIAIAVDHSIS 273 (869)
Q Consensus 194 ~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~TtrPeTl~g~~~i~v~~~~~~~ 273 (869)
+..+-.++.|
T Consensus 155 ----------------------------------------------------Ce~cG~~~~p------------------ 164 (666)
T PRK00133 155 ----------------------------------------------------CEVCGATYSP------------------ 164 (666)
T ss_pred ----------------------------------------------------CCCCCCCCCC------------------
T ss_conf ----------------------------------------------------2245651673------------------
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 34541314589998865311112455543025532378610377777415776311234545333222111346721101
Q gi|254780802|r 274 EKLSCDNTDIKEFCDEEKQKGTSLSVLDKTEKKGIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIFGCPFADQRDMD 353 (869)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~P~~~~~~ipv~~~~~V~~~~GTG~V~~~P~h~~~D~~ 353 (869)
...++|.. .-.|+-++.
T Consensus 165 --------------------------------------~eL~~p~~--------------~~~g~~~e~----------- 181 (666)
T PRK00133 165 --------------------------------------TELINPKS--------------AISGATPVL----------- 181 (666)
T ss_pred --------------------------------------HHHCCCCC--------------CCCCCCCEE-----------
T ss_conf --------------------------------------44238643--------------457985166-----------
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHH----HHHC
Q ss_conf 221035443210167765554222112101233445830001356466548889999740467752022211----1000
Q gi|254780802|r 354 FAKKYGLPIIPIMKRSINHSQDIEEGKAFSGDGIMINSSFLDGMTNTEALQAVMSHLEKQNIKNSPIGKRKI----NFRL 429 (869)
Q Consensus 354 ~~~k~glpi~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~l~~~~~~~~~~~~~~~----~~~l 429 (869)
.++ ...+ +...+..+.+.+++....+ .+..++.+ .-.|
T Consensus 182 ----------------------~~~-----------e~~f---f~Ls~~~~~L~~~~~~~~~--~~~~~n~~~~~l~~gL 223 (666)
T PRK00133 182 ----------------------KES-----------EHFF---FKLPDFEEFLKEWTRSGAL--QPNVANKMKEWLEEGL 223 (666)
T ss_pred ----------------------ECC-----------CCHH---HHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHCCC
T ss_conf ----------------------035-----------3333---1387777899875104889--8789999999985788
Q ss_pred CCCCCCCCCCC-CCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 11122112322-22234223334684634742000111001000224542100245642110136764435643234566
Q gi|254780802|r 430 RDWCISRQRSW-GCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTWKKIFCVKCGSEALRETDTMDTFV 508 (869)
Q Consensus 430 ~DW~ISRqr~W-G~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~dvld~w~ 508 (869)
+|||||||+.| |+|+|-. .+ -++.+||
T Consensus 224 ~D~~ISR~~~W~GipvP~~----~~------------------------------------------------kv~YVW~ 251 (666)
T PRK00133 224 QDWDISRDAPYFGFEIPGA----PG------------------------------------------------KVFYVWL 251 (666)
T ss_pred CCCCEEEECCCCCEECCCC----CC------------------------------------------------EEEEEEE
T ss_conf 7753040278444588898----76------------------------------------------------4899961
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHCCCHH-----HHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 643332233555654410135664114334-----401455544332023455532013478732232002222355323
Q gi|254780802|r 509 DSSWYYMRYMTPHAKDPINKELVRQWFPVD-----QYIGGIEHAVLHLLYARFFAHILKKIGYIEIDEPFKRLFTQGMVV 583 (869)
Q Consensus 509 dS~~~~~~~~~~~~~~~~~~e~~~~~~P~D-----~~i~g~d~~~~~~~~~r~~~~~l~~~g~~~~~~pf~~l~~~G~v~ 583 (869)
|+-+-|+..+.... ..+.+.++.|||.| +.+-|.|- +. +++-+|..+|+..|. ..| ++++.||++
T Consensus 252 DA~igYis~t~~~~--~~~~~~~~~~W~~d~~~~~vhfiGKDi--i~-FH~i~wPa~L~~~g~---~lP-~~v~~hg~l- 321 (666)
T PRK00133 252 DAPIGYISSTKNLC--DKRGLDWDEYWKKDSDTELYHFIGKDI--IY-FHTLFWPAMLEGAGY---RLP-TNVFAHGFL- 321 (666)
T ss_pred CCCHHHHHHHHHHC--CCCCCCHHHCCCCCCCCCEEEECCCCH--HH-HHHHHHHHHHHHCCC---CCC-CCCCCCCCE-
T ss_conf 56453777644331--435655876388998763367534431--14-647679999984677---888-612114648-
Q ss_pred CCCCCCCCCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 22433235870013062022102567775441104897064047421000000122221001234633566655301332
Q gi|254780802|r 584 HETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPP 663 (869)
Q Consensus 584 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~~~~~~~~ 663 (869)
..+|+|||||+||+|+|.+++++||+|++|+|+++..+.
T Consensus 322 -----------------------------------------~~~G~KmSKS~Gnvv~p~~~l~~yg~D~lRY~l~~~~p~ 360 (666)
T PRK00133 322 -----------------------------------------TVEGAKMSKSRGTFIWARTYLDHLDPDYLRYYLAAKLPS 360 (666)
T ss_pred -----------------------------------------EECCEEEECCCCEEEEHHHHHHHCCCCCEEHHHHHCCCC
T ss_conf -----------------------------------------778806001267176179999866964530203310789
Q ss_pred C-CCCCCCCCCH---------HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 1-1111343210---------11455677889999976302466789756999999999999999998816889999999
Q gi|254780802|r 664 D-RDIIWSNKGV---------DSTYQFIQQIWRLIYNAKDELQTSSTKKDISLISKSTKFLERIEENYQNLSFNKAVANI 733 (869)
Q Consensus 664 ~-~d~~~s~~~i---------~~~~rfl~kl~~l~~~~~~~~~~~~~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai~~i 733 (869)
+ +|.+||++.+ ....|+++|+..++....++.-+ ....|..++..+..+++++.++|++++|++|++.+
T Consensus 361 ~~~D~dfs~~~~~~r~NsdLan~lGNl~~R~~~~~~k~~~g~vp-~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~Al~~i 439 (666)
T PRK00133 361 RIDDIDFNWEDFQQRVNSDLVGKLVNFASRAAGFINKRFDGKLP-DELADPELLEEFRAAAESIAEAYEAREFRKALREI 439 (666)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 87677869999999986888876668999999999986599789-97458999999999999999999810699999999
Q ss_pred HHHHHHHHHHHHHHCCCCC-----CCCH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC
Q ss_conf 9999999999986211000-----2217----999999999999997223438999999982899
Q gi|254780802|r 734 HELVNVISKPLMEIAKKKS-----NADR----ISTIRYILEKLIIMMSPMIPHLAEECWQLLGNA 789 (869)
Q Consensus 734 ~~f~n~ls~~y~~~~k~~~-----~~~~----~~~l~~vl~~l~~lLaPi~PhiaEEiw~~Lg~~ 789 (869)
++++...++|..+...... ...+ ..++.++++.+.+||+||||.+|++||++||-+
T Consensus 440 ~~l~~~~NkYi~~~~PW~L~K~d~~~~~l~~Vl~~~le~lr~laiLL~PfmP~~a~ki~~~Lg~~ 504 (666)
T PRK00133 440 MALADRANKYVDDKEPWKLAKQEGEDAALQEVCSVGLNLFRALAIYLKPVLPELAERAEAFLNVE 504 (666)
T ss_pred HHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC
T ss_conf 99999998887744876553685668999999999999999999972386737899999980989
No 25
>cd00817 ValRS_core This is the catalytic core domain of valine amino-acyl tRNA synthetases (ValRS) . This enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=0 Score=571.44 Aligned_cols=346 Identities=30% Similarity=0.524 Sum_probs=260.3
Q ss_pred CCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCC----------------C
Q ss_conf 838998077897898740047797789999997771898556768814020589999998099----------------9
Q gi|254780802|r 34 KKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNV----------------H 97 (869)
Q Consensus 34 ~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~----------------~ 97 (869)
++|+||+|||||||+|||||+++++++|+++||+||+|++|+|++|||+||||||.++++... .
T Consensus 1 k~f~itTpipYaNG~~HiGHa~~~i~aDv~aRy~rm~G~~V~f~~G~DeHGlpie~~~ek~~~~~~~~~~~~~~~~f~~~ 80 (363)
T cd00817 1 EPFVIDTPPPNVTGSLHIGHALTNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLEK 80 (363)
T ss_pred CCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHCCHHHHHHH
T ss_conf 98599489998888613527898999999999998169977887845756689999999983605665000798999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCHHHHHCCCC
Q ss_conf 99999999999999999819176646982147735999999999999988963412213321477676778989843853
Q gi|254780802|r 98 PKMWTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQVINGRG 177 (869)
Q Consensus 98 ~~~~~~~~i~~~k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~pV~wcp~~~t~la~~Ev~~g~~ 177 (869)
|++++.++.+.++++|++||+++||++.++|+|+.|++++||.|.+|+++|+||++.+||+|+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~lg~~~D~~~~~rT~d~~h~~~vq~~f~~l~~~G~iY~~~~~v~~~v---------------- 144 (363)
T cd00817 81 CWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSKAVQEAFVRLYEKGLIYRANRLVNWVI---------------- 144 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHCHHCCCCCCEECCCHHHHHHHHHHHHHHHHCCCEECCCCEECCEE----------------
T ss_conf 9999999999999999983301165750343776799999999999998889763682457377----------------
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf 34564322334752334303444544321002255432222210001455767545355567777775136532001344
Q gi|254780802|r 178 WRSDAPVEQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIRWEIVSNTIDQIEEILVYTTRPET 257 (869)
Q Consensus 178 ~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~TtrPeT 257 (869)
|....++||++.++..+++++..+
T Consensus 145 -------e~~~~~~~f~~~~~~~~~l~~~~~------------------------------------------------- 168 (363)
T cd00817 145 -------EPLLKPQWFVKVKDLAKAALEAVK------------------------------------------------- 168 (363)
T ss_pred -------EEEECCEEEEECHHHHHHHHHHHH-------------------------------------------------
T ss_conf -------998776168987788999999996-------------------------------------------------
Q ss_pred CCCCCEEEEECCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEEEEEECCCCCCCCC
Q ss_conf 43232003302443203454131458999886531111245554302553237861037777741577631123454533
Q gi|254780802|r 258 IFGASFIAIAVDHSISEKLSCDNTDIKEFCDEEKQKGTSLSVLDKTEKKGIYTGIHVKHPLNPNVVIPVYIANFVFMNYG 337 (869)
Q Consensus 258 l~g~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~P~~~~~~ipv~~~~~V~~~~G 337 (869)
.+++ . +
T Consensus 169 ---------------------------------------------------------~~~~--~----~----------- 174 (363)
T cd00817 169 ---------------------------------------------------------EGDI--K----F----------- 174 (363)
T ss_pred ---------------------------------------------------------CCCC--E----E-----------
T ss_conf ---------------------------------------------------------2997--7----8-----------
Q ss_pred CCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 32221113467211012210354432101677655542221121012334458300013564665488899997404677
Q gi|254780802|r 338 TGAIFGCPFADQRDMDFAKKYGLPIIPIMKRSINHSQDIEEGKAFSGDGIMINSSFLDGMTNTEALQAVMSHLEKQNIKN 417 (869)
Q Consensus 338 TG~V~~~P~h~~~D~~~~~k~glpi~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~l~~~~~~~ 417 (869)
.|.+ .+..+..+++
T Consensus 175 ------~P~~------------------------------------------------------~~~~~~~~l~------ 188 (363)
T cd00817 175 ------VPER------------------------------------------------------MEKRYEDWLE------ 188 (363)
T ss_pred ------ECHH------------------------------------------------------HHHHHHHHHH------
T ss_conf ------5789------------------------------------------------------9999999985------
Q ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 52022211100011122112322222342233346846347420001110010002245421002456421101367644
Q gi|254780802|r 418 SPIGKRKINFRLRDWCISRQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTWKKIFCVKCGSEA 497 (869)
Q Consensus 418 ~~~~~~~~~~~l~DW~ISRqr~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 497 (869)
.++||||||||+||+|||+|+|++|+....+..+... ..... ....+..++...
T Consensus 189 ----------~l~Dw~ISR~~~WG~piP~~~~~~~~~~~~~~~~~~~--------------~~~~~--~~~~~~~~~~~~ 242 (363)
T cd00817 189 ----------NIRDWCISRQLWWGHRIPAWYCEDCGHWVVAREEEEA--------------VDPAI--PEACCPCGSEEL 242 (363)
T ss_pred ----------CCCCCCCCHHCCCCCCCCEEECCCCCCEEECCCHHHH--------------HHHHH--HCCCCCCCCCCC
T ss_conf ----------1576533100013666661462789847706733641--------------11243--204788872113
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCC-CCCCCCCCCC
Q ss_conf 356432345666433322335556544101356641143344014555443320234555320134787-3223200222
Q gi|254780802|r 498 LRETDTMDTFVDSSWYYMRYMTPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIGY-IEIDEPFKRL 576 (869)
Q Consensus 498 ~r~~dvld~w~dS~~~~~~~~~~~~~~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~g~-~~~~~pf~~l 576 (869)
.|++||+|+||||++.++..... +.+...++.++|+|+.+.|.|+ + |||...+...+. +..+.||+++
T Consensus 243 ~~~~dv~dvWfds~~~~~~~~~~----~~~~~~~~~~~p~d~~~~GkDI--i-----rfW~~~~~~~~~~l~~~~P~~~v 311 (363)
T cd00817 243 EQDTDVLDTWFSSSLWPFSTLGW----PEETKDLKKFYPTSLLPTGHDI--I-----FFWVARMIMRGLELTGKLPFKEV 311 (363)
T ss_pred CCCCCCCCHHHHHCCCCHHHHCC----CCCCCHHHHCCCCCEEEEEEHH--H-----HHHHHHHHHHHHHHCCCCCCCEE
T ss_conf 03677653044524772255089----7433145407876378762388--7-----46999999987662489886566
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 23553232243323587001306202210256777544110489706404742100000012222100123463356665
Q gi|254780802|r 577 FTQGMVVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLF 656 (869)
Q Consensus 577 ~~~G~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~ 656 (869)
+.||++++ .+|+|||||+||||+|.+++++||||+||+|
T Consensus 312 ~~HG~vl~-----------------------------------------~~G~KMSKS~GNvv~p~~~l~~yg~D~lRy~ 350 (363)
T cd00817 312 YIHGLVRD-----------------------------------------EDGRKMSKSLGNVIDPLDVIDGYGADALRFT 350 (363)
T ss_pred EECCEEEC-----------------------------------------CCCCCCCCCCCCCCCHHHHHHHCCCHHHHHH
T ss_conf 87862899-----------------------------------------9988757889986698999987792799999
Q ss_pred HHHCCCCCCCCCC
Q ss_conf 5301332111113
Q gi|254780802|r 657 VLSDSPPDRDIIW 669 (869)
Q Consensus 657 ~~~~~~~~~d~~~ 669 (869)
+++++++++|.++
T Consensus 351 l~~~~~~~~D~~~ 363 (363)
T cd00817 351 LASAASQGRDINL 363 (363)
T ss_pred HHHHCCCCCCCCC
T ss_conf 9952998777898
No 26
>cd00812 LeuRS_core This is the catalytic core domain of leucyl tRNA synthetase (LeuRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=0 Score=535.05 Aligned_cols=347 Identities=47% Similarity=0.868 Sum_probs=264.6
Q ss_pred CEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCC------------------
Q ss_conf 38998077897898740047797789999997771898556768814020589999998099------------------
Q gi|254780802|r 35 KYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNV------------------ 96 (869)
Q Consensus 35 kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~------------------ 96 (869)
|||||.|+||+||+|||||+++++++||++||+||+|++|+|++|+|+||+||+.+|++.++
T Consensus 1 k~~ITta~PY~NG~~HiGH~~~~i~aDi~~Ry~Rm~G~~V~~~~G~DeHG~pI~~~A~~~g~~~~~~~~~~~~~~~~~~~ 80 (376)
T cd00812 1 KFYILVMFPYPSGRLHVGHVRTYTIGDIIARYKRMKGYNVLFPMGFDAFGLPAENAADKIGREDEDTIEPYRDVGVPDEE 80 (376)
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCHHHHH
T ss_conf 97998589888974546886989999999999995599704688456567899999999687477653011110001887
Q ss_pred -----CHHHHHHHHHHHHHHHHHHCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCHHH
Q ss_conf -----999999999999999999819176646982147735999999999999988963412213321477676778989
Q gi|254780802|r 97 -----HPKMWTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQ 171 (869)
Q Consensus 97 -----~~~~~~~~~i~~~k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~pV~wcp~~~t~la~~E 171 (869)
+|++++.++.+.++++|++||+++||+|.|+|+|+.+.++||++|.+|+++|+||++.++|+|||.|++.
T Consensus 81 ~~~~~~p~~~~~~~~~~~~~~~~~lg~~~D~~~~~~T~~~~~~~~vq~~f~~L~~~G~iy~~~~~~~y~~~~~~~----- 155 (376)
T cd00812 81 IEKFADPKYWTEYFIAKMKEQLKRMGFSIDWRREFTTTDPEYYKFTQWQFLKLKEKGLIYKGEAPVNWCKLLDQW----- 155 (376)
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCCEECCCCCCCEE-----
T ss_conf 861279999999999999999998098737686643377789999999999999889889517555364677605-----
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCHH-HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 84385334564322334752334303-44454432100225543222221000145576754535556777777513653
Q gi|254780802|r 172 VINGRGWRSDAPVEQRSLPQWFFKIS-DLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIRWEIVSNTIDQIEEILV 250 (869)
Q Consensus 172 v~~g~~~~~~~~v~~~~~~~~~~~~~-~~~~~l~~~~~~l~~~p~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~ 250 (869)
|++.. ++.+++...++.+..
T Consensus 156 ---------------------f~~~~~~~~~~~~~~~~~~~~-------------------------------------- 176 (376)
T cd00812 156 ---------------------FLKYSTEWAERLLKDLEGLDT-------------------------------------- 176 (376)
T ss_pred ---------------------EECCCHHHHHHHHHHHHCCCC--------------------------------------
T ss_conf ---------------------741667889998740420467--------------------------------------
Q ss_pred EEECCCCCCCCCEEEEECCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEEEEEECC
Q ss_conf 20013444323200330244320345413145899988653111124555430255323786103777774157763112
Q gi|254780802|r 251 YTTRPETIFGASFIAIAVDHSISEKLSCDNTDIKEFCDEEKQKGTSLSVLDKTEKKGIYTGIHVKHPLNPNVVIPVYIAN 330 (869)
Q Consensus 251 ~TtrPeTl~g~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~P~~~~~~ipv~~~~ 330 (869)
.|+ .++.. .. . ..+. +. +.
T Consensus 177 ----------------~p~------------~~~~~---~~------~----------~~~~-----~~-~~-------- 195 (376)
T cd00812 177 ----------------WPE------------EVKNM---QE------N----------WIGW-----LK-GW-------- 195 (376)
T ss_pred ----------------CCH------------HHHHH---HH------H----------HHHH-----CC-CC--------
T ss_conf ----------------868------------89999---99------9----------8730-----24-65--------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHH
Q ss_conf 34545333222111346721101221035443210167765554222112101233445830001356466548889999
Q gi|254780802|r 331 FVFMNYGTGAIFGCPFADQRDMDFAKKYGLPIIPIMKRSINHSQDIEEGKAFSGDGIMINSSFLDGMTNTEALQAVMSHL 410 (869)
Q Consensus 331 ~V~~~~GTG~V~~~P~h~~~D~~~~~k~glpi~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~l 410 (869)
..
T Consensus 196 ----------------------~~-------------------------------------------------------- 197 (376)
T cd00812 196 ----------------------AC-------------------------------------------------------- 197 (376)
T ss_pred ----------------------EE--------------------------------------------------------
T ss_conf ----------------------25--------------------------------------------------------
Q ss_pred HHHCCCCCCHHHHHHHHHCCCCCCCCCC----CCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf 7404677520222111000111221123----222223422333468463474200011100100022454210024564
Q gi|254780802|r 411 EKQNIKNSPIGKRKINFRLRDWCISRQR----SWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTWK 486 (869)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~l~DW~ISRqr----~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l~~~~~~~ 486 (869)
....+......+++|||||||| +||.|||++++++|+.+
T Consensus 198 ------~~~~~~~~~~~~l~dw~isr~~~~~~~wg~~ip~~~~~~~~~~------------------------------- 240 (376)
T cd00812 198 ------ARRYGLGTVLPWDRDWLIERLRDSTIYWGYYTPAHHCEKCGPV------------------------------- 240 (376)
T ss_pred ------EEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEE-------------------------------
T ss_conf ------4111115406555443413444566667700215975678641-------------------------------
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 211013676443564323456664333223355565-4410135664114334401455544332023455532013478
Q gi|254780802|r 487 KIFCVKCGSEALRETDTMDTFVDSSWYYMRYMTPHA-KDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIG 565 (869)
Q Consensus 487 ~~~~~~~~~~~~r~~dvld~w~dS~~~~~~~~~~~~-~~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~g 565 (869)
+..++....++.+++|+||||.|.++.+..... ....+.+.+++|+|+|+++.|.|.+..|++|..+|+..|...+
T Consensus 241 ---~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~~GkDii~fH~~~~~~~~~~l~~~~ 317 (376)
T cd00812 241 ---CPKCGKPAKRETDTMDEFFDSSWYYLRYLDPKNSEAPFDREEFEYWYPVDLYIGGKEHAVNHLLYSRFNHKALFDEG 317 (376)
T ss_pred ---CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCC
T ss_conf ---46667555665446886577630146667843344766879998428860688133542013679999999998646
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCC
Q ss_conf 73223200222235532322433235870013062022102567775441104897064047421000000122221001
Q gi|254780802|r 566 YIEIDEPFKRLFTQGMVVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVI 645 (869)
Q Consensus 566 ~~~~~~pf~~l~~~G~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i 645 (869)
. ..|+++++.||++. .+|+|||||+||+|+|.++|
T Consensus 318 ~---~~~p~~v~~hG~l~------------------------------------------~~G~KMSKS~Gn~v~p~~~l 352 (376)
T cd00812 318 T---KEPPKGLRVQGMVL------------------------------------------LEGEKMSKSKGNVVTPDEAI 352 (376)
T ss_pred C---CCCCCEEEECCCEE------------------------------------------CCCEECCCCCCCCCCHHHHH
T ss_conf 7---77982668757296------------------------------------------69966377899884989999
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCCC
Q ss_conf 234633566655301332111113
Q gi|254780802|r 646 KSYGADTARLFVLSDSPPDRDIIW 669 (869)
Q Consensus 646 ~~yGaD~lRl~~~~~~~~~~d~~~ 669 (869)
++||||++|+|||+.++.++|.+|
T Consensus 353 ~~yg~D~lR~~Ll~~~p~~~D~~F 376 (376)
T cd00812 353 KKYGADATRLYLLFAAPPESDANW 376 (376)
T ss_pred HHCCCHHHHHHHHHCCCCCCCCCC
T ss_conf 885954999999944995568998
No 27
>cd00818 IleRS_core This is the catalytic core domain of isoleucine amino-acyl tRNA synthetases (IleRS) . This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=0 Score=530.42 Aligned_cols=322 Identities=31% Similarity=0.560 Sum_probs=246.2
Q ss_pred CCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH-CC----------------
Q ss_conf 8389980778978987400477977899999977718985567688140205899999980-99----------------
Q gi|254780802|r 34 KKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREH-NV---------------- 96 (869)
Q Consensus 34 ~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~-~~---------------- 96 (869)
|+|+|++||||+||.+||||+++++++|+++||+||+|++|+|++|+|+||+|||.+|++. +.
T Consensus 1 p~~~~~~~pPYaNg~pHiGHa~~~i~aDv~aRy~Rl~G~~v~f~~GtDeHG~pIe~~a~k~~~~~~~~~~~~~~~~~f~~ 80 (339)
T cd00818 1 PEFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFRA 80 (339)
T ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHH
T ss_conf 95599589988578734558899999999999998069988778851440399999999964898730476559999999
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCHHHHHCCC
Q ss_conf 99999999999999999981917664698214773599999999999998896341221332147767677898984385
Q gi|254780802|r 97 HPKMWTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQVINGR 176 (869)
Q Consensus 97 ~~~~~~~~~i~~~k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~pV~wcp~~~t~la~~Ev~~g~ 176 (869)
.|++++.++.+.++++|+|+|++.||++.|.|+++.|.+.++++|.+|+++|+||+|.+|++|+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~T~~~~~~~~~~~~f~~l~~~G~iy~~~~~~~~p~--------------- 145 (339)
T cd00818 81 KCREFALRYIDEQEETFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLYEKGLLYRGYKVVPWPL--------------- 145 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHCHHCCCCCCEECCCHHHHHHHHHHHHHHHHCCCEECCCEEECCCC---------------
T ss_conf 99999999999999999983735147777121688999999999999998888626760536876---------------
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf 33456432233475233430344454432100225543222221000145576754535556777777513653200134
Q gi|254780802|r 177 GWRSDAPVEQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIRWEIVSNTIDQIEEILVYTTRPE 256 (869)
Q Consensus 177 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~TtrPe 256 (869)
..+..++|||+++++.+.|++..+.
T Consensus 146 --------~~~~~~~~F~~l~~~~~~ll~~~~~----------------------------------------------- 170 (339)
T cd00818 146 --------IYRATPQWFIRVEKLKDRLLEANDK----------------------------------------------- 170 (339)
T ss_pred --------CCEECCCEEEECHHHHHHHHHHHHC-----------------------------------------------
T ss_conf --------0058156799868999999987753-----------------------------------------------
Q ss_pred CCCCCCEEEEECCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEEEEEECCCCCCCC
Q ss_conf 44323200330244320345413145899988653111124555430255323786103777774157763112345453
Q gi|254780802|r 257 TIFGASFIAIAVDHSISEKLSCDNTDIKEFCDEEKQKGTSLSVLDKTEKKGIYTGIHVKHPLNPNVVIPVYIANFVFMNY 336 (869)
Q Consensus 257 Tl~g~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~P~~~~~~ipv~~~~~V~~~~ 336 (869)
+ +. +
T Consensus 171 ------------------------------------------------------------~---~~-~------------ 174 (339)
T cd00818 171 ------------------------------------------------------------V---NW-I------------ 174 (339)
T ss_pred ------------------------------------------------------------C---CE-E------------
T ss_conf ------------------------------------------------------------8---73-7------------
Q ss_pred CCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 33222111346721101221035443210167765554222112101233445830001356466548889999740467
Q gi|254780802|r 337 GTGAIFGCPFADQRDMDFAKKYGLPIIPIMKRSINHSQDIEEGKAFSGDGIMINSSFLDGMTNTEALQAVMSHLEKQNIK 416 (869)
Q Consensus 337 GTG~V~~~P~h~~~D~~~~~k~glpi~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~l~~~~~~ 416 (869)
|.+. + + ..+..+++
T Consensus 175 --------p~~~-------~---------------------------------~-------------~~l~~~~~----- 188 (339)
T cd00818 175 --------PEWV-------K---------------------------------E-------------GRFGNWLE----- 188 (339)
T ss_pred --------CCHH-------H---------------------------------H-------------HHHHHHHH-----
T ss_conf --------8610-------6---------------------------------6-------------49999971-----
Q ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 75202221110001112211232222234223334684634742000111001000224542100245642110136764
Q gi|254780802|r 417 NSPIGKRKINFRLRDWCISRQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTWKKIFCVKCGSE 496 (869)
Q Consensus 417 ~~~~~~~~~~~~l~DW~ISRqr~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~ 496 (869)
.++||||||||+||+|||+|+|++|+.+.
T Consensus 189 -----------~l~Dw~ISR~~~WGipvP~w~~~~~~~~~---------------------------------------- 217 (339)
T cd00818 189 -----------NRRDWCISRQRYWGTPIPVWYSEDCGEVL---------------------------------------- 217 (339)
T ss_pred -----------CCCCCEEEECCCCCCCCCEEECCCCCCCC----------------------------------------
T ss_conf -----------68565044026667534635648998321----------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 43564323456664333223355565441013566411433440145554433202345553201347873223200222
Q gi|254780802|r 497 ALRETDTMDTFVDSSWYYMRYMTPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIGYIEIDEPFKRL 576 (869)
Q Consensus 497 ~~r~~dvld~w~dS~~~~~~~~~~~~~~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~g~~~~~~pf~~l 576 (869)
..|++||+|+||||+..++..... +.+.+.+..++|+|+++.|+|+ +|. .||..++...+ +....||+++
T Consensus 218 ~~~~~dv~yVWfDa~~~~~~~~~~----~~~~~~~~~~~p~~~~~~GkDi--~~~---~f~~~~~~~~~-~~~~~P~~~v 287 (339)
T cd00818 218 VRRVPDVLDVWFDSGSMPYAQLHY----PFENEDFEELFPADFILEGSDQ--TRG---WFYSLLLLSTA-LFGKAPYKNV 287 (339)
T ss_pred CCCCCCHHHHHHHCCCCHHHHCCC----CCCCHHHHCCCCCEEEEECCCC--CCH---HHHHHHHHHHH-HCCCCCCCEE
T ss_conf 003650177776356248987289----8643134138766056606331--233---79999998788-5489985214
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 23553232243323587001306202210256777544110489706404742100000012222100123463356665
Q gi|254780802|r 577 FTQGMVVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLF 656 (869)
Q Consensus 577 ~~~G~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~ 656 (869)
+.||+++. .+|+|||||+||||+|.+++++||||+||+|
T Consensus 288 ~~hg~~l~-----------------------------------------~~G~KMSKS~GnvI~p~~~l~~y~~D~lRyy 326 (339)
T cd00818 288 IVHGFVLD-----------------------------------------EDGRKMSKSLGNVVDPQEVIDKYGADALRLW 326 (339)
T ss_pred EECCEEEC-----------------------------------------CCCCCCCCCCCCCCCHHHHHHHCCCHHHHHH
T ss_conf 88984999-----------------------------------------9986627889987898999987694799999
Q ss_pred HHHCCCCCCCCCC
Q ss_conf 5301332111113
Q gi|254780802|r 657 VLSDSPPDRDIIW 669 (869)
Q Consensus 657 ~~~~~~~~~d~~~ 669 (869)
+++.+++++|.+|
T Consensus 327 l~~~~~~~~D~~F 339 (339)
T cd00818 327 VASSDVYAEDLRF 339 (339)
T ss_pred HHHCCCCCCCCCC
T ss_conf 9916888889999
No 28
>pfam09334 tRNA-synt_1g tRNA synthetases class I (M). This family includes methionyl tRNA synthetases.
Probab=100.00 E-value=0 Score=508.27 Aligned_cols=376 Identities=20% Similarity=0.285 Sum_probs=253.7
Q ss_pred EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 89980778978987400477977899999977718985567688140205899999980999999999999999999998
Q gi|254780802|r 36 YFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQLQS 115 (869)
Q Consensus 36 f~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~~~~ 115 (869)
|+|+.||||+||.|||||+++++++|+++||+||+||+|+|++|+|+||+||+.+|++.+++|++++.++++.++++|++
T Consensus 1 ~~I~~ppP~~nG~lHiGHa~~~~~~Dvl~R~~r~~G~~V~~v~g~D~~g~~i~~ka~~~g~~~~e~~~~y~~~~~~~~~~ 80 (388)
T pfam09334 1 FLITTALPYVNGPPHIGHLYTTIPADVYARYLRLRGYDVLFVTGTDEHGTKIELAAEKEGVTPQELVDRYHEEFKELFKK 80 (388)
T ss_pred CEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 98937898888860022418899999999999956997071386485379999999984999999999999999999998
Q ss_pred CCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 19176646982147735999999999999988963412213321477676778989843853345643223347523343
Q gi|254780802|r 116 IGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQVINGRGWRSDAPVEQRSLPQWFFK 195 (869)
Q Consensus 116 lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~pV~wcp~~~t~la~~Ev~~g~~~~~~~~v~~~~~~~~~~~ 195 (869)
||++. ++.+.|+++.|.+.+++.|.+|+++|+||++.++|+|||+|+|.|+|.+|. |.|..|+.......
T Consensus 81 lgi~~--D~~~~t~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~-g~cp~~~~~~~~~~------- 150 (388)
T pfam09334 81 FNISF--DDFIRTTSERHKELVQEFFLKLYEKGDIYEGEYEGWYCVSDERFLPDRYVE-GTCPYCGSEDARGD------- 150 (388)
T ss_pred HCCCC--CCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCHHHHC-CCCCCCCCCCCCCC-------
T ss_conf 39967--878657984689999999875140681553241122366666666533307-54575575013664-------
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCHH
Q ss_conf 03444544321002255432222210001455767545355567777775136532001344432320033024432034
Q gi|254780802|r 196 ISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIRWEIVSNTIDQIEEILVYTTRPETIFGASFIAIAVDHSISEK 275 (869)
Q Consensus 196 ~~~~~~~l~~~~~~l~~~p~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~TtrPeTl~g~~~i~v~~~~~~~~~ 275 (869)
.+... |.
T Consensus 151 -------------------------------------------------~~e~~----------G~-------------- 157 (388)
T pfam09334 151 -------------------------------------------------QCEVC----------GR-------------- 157 (388)
T ss_pred -------------------------------------------------HHHCC----------CC--------------
T ss_conf -------------------------------------------------10023----------88--------------
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 54131458999886531111245554302553237861037777741577631123454533322211134672110122
Q gi|254780802|r 276 LSCDNTDIKEFCDEEKQKGTSLSVLDKTEKKGIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIFGCPFADQRDMDFA 355 (869)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~P~~~~~~ipv~~~~~V~~~~GTG~V~~~P~h~~~D~~~~ 355 (869)
.++.. ...+|.. .-.|+
T Consensus 158 --------------------~~e~~------------~~~~~~~--------------~~~~~----------------- 174 (388)
T pfam09334 158 --------------------PLEPT------------ELINPRS--------------AISGS----------------- 174 (388)
T ss_pred --------------------CCCHH------------HHCCCCC--------------CCCCC-----------------
T ss_conf --------------------27867------------7417644--------------46799-----------------
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHH----HHHCCC
Q ss_conf 1035443210167765554222112101233445830001356466548889999740467752022211----100011
Q gi|254780802|r 356 KKYGLPIIPIMKRSINHSQDIEEGKAFSGDGIMINSSFLDGMTNTEALQAVMSHLEKQNIKNSPIGKRKI----NFRLRD 431 (869)
Q Consensus 356 ~k~glpi~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~l~~~~~~~~~~~~~~~----~~~l~D 431 (869)
++. ......+.+...+..+.+.+++..........-++.. ...++|
T Consensus 175 -----~~~-------------------------~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~D 224 (388)
T pfam09334 175 -----TPE-------------------------LKEEEHYFFRLSKFQDKLLEWIKENPDEPPSNVNEVVLSWLKEGLKD 224 (388)
T ss_pred -----CCE-------------------------EECCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf -----754-------------------------43244123306889999999995499889889999999998668887
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 12211232222234223334684634742000111001000224542100245642110136764435643234566643
Q gi|254780802|r 432 WCISRQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTWKKIFCVKCGSEALRETDTMDTFVDSS 511 (869)
Q Consensus 432 W~ISRqr~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~dvld~w~dS~ 511 (869)
||||||++||+|+|-. + ..++++|||+.
T Consensus 225 w~ISR~~~WG~~iP~~--~--------------------------------------------------~~~~~vW~da~ 252 (388)
T pfam09334 225 LSITRDLDWGIPVPGD--P--------------------------------------------------GKVIYVWFDAL 252 (388)
T ss_pred CCCCCCCCCCCCCCCC--C--------------------------------------------------CEEEEEECCCC
T ss_conf 6441247787504888--9--------------------------------------------------80687723565
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHCCCHH-----HHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 332233555654410135664114334-----401455544332023455532013478732232002222355323224
Q gi|254780802|r 512 WYYMRYMTPHAKDPINKELVRQWFPVD-----QYIGGIEHAVLHLLYARFFAHILKKIGYIEIDEPFKRLFTQGMVVHET 586 (869)
Q Consensus 512 ~~~~~~~~~~~~~~~~~e~~~~~~P~D-----~~i~g~d~~~~~~~~~r~~~~~l~~~g~~~~~~pf~~l~~~G~v~~~~ 586 (869)
+.++...... ..+.+.++.|+|.+ +...|.|.+.-| ..+|...+...+. .+++.++.||++.
T Consensus 253 ~~~~~~~~~~---~~~~~~~~~~w~~~~~~~~i~~~G~Di~~fh---~~~~~a~~~~~~~----~~~~~~~~~g~v~--- 319 (388)
T pfam09334 253 IGYISATKYL---SGNPEKWKKFWADDPDTEIVHFIGKDIIRFH---AIYWPAMLMAAGL----PLPTQVFAHGWLT--- 319 (388)
T ss_pred CCCCCCCCCC---CCCHHHHHHHCCCCCCCEECCCCCCCCCCHH---HHHHHHHHHHCCC----CCCCEEEEEEEEE---
T ss_conf 5520002777---7781788864436776200010676414201---7899999983899----9886678757997---
Q ss_pred CCCCCCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 33235870013062022102567775441104897064047421000000122221001234633566655301332111
Q gi|254780802|r 587 YYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRD 666 (869)
Q Consensus 587 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~~~~~~~~~~d 666 (869)
.+|+|||||+||+|+|.+++++||||+|||||++.++.++|
T Consensus 320 ---------------------------------------~~G~KMSKSlGN~i~~~d~i~~ygaDalR~~L~~~~~~~~d 360 (388)
T pfam09334 320 ---------------------------------------VEGGKMSKSRGNVVDPDELLDRYGVDALRYYLAREAPEGKD 360 (388)
T ss_pred ---------------------------------------ECCEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCC
T ss_conf ---------------------------------------59944478699878889999887828999999953999899
Q ss_pred CCCCCCCHHHHHH--HHHHHHHHHHHH
Q ss_conf 1134321011455--677889999976
Q gi|254780802|r 667 IIWSNKGVDSTYQ--FIQQIWRLIYNA 691 (869)
Q Consensus 667 ~~~s~~~i~~~~r--fl~kl~~l~~~~ 691 (869)
++||++.+...++ |++++||++...
T Consensus 361 ~~Fs~~~~~~~~n~~~~~kl~N~~~r~ 387 (388)
T pfam09334 361 GDFSWEDFVERVNSELANDLGNLVNRT 387 (388)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 989999999998799888776577330
No 29
>cd00668 Ile_Leu_Val_MetRS_core This is the catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=100.00 E-value=0 Score=508.33 Aligned_cols=324 Identities=37% Similarity=0.721 Sum_probs=253.3
Q ss_pred CEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCC----------CHHHHHHH
Q ss_conf 38998077897898740047797789999997771898556768814020589999998099----------99999999
Q gi|254780802|r 35 KYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNV----------HPKMWTYQ 104 (869)
Q Consensus 35 kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~----------~~~~~~~~ 104 (869)
||+|++|||||||+||+||+++++++|+++||+||+||+|+|++||||||+||+.+|++.+. +|++++.+
T Consensus 1 ~~~i~~~~P~~nG~LHiGHar~~~~~Dv~~R~~r~~G~~V~~v~g~D~~G~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (334)
T cd00668 1 KFYITTPPPYVNGVLHLGHALTYTLKDIIARYKRMRGYNVLFPPGWDEHGLPIENKAEKEGGIEGKKEEFLEDPKEWVDK 80 (334)
T ss_pred CEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 98995599888886146675989999999999981699536068668656899999999687121057777539999999
Q ss_pred HHHHHHHHHHHCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCHHHHHCCCCCCCCCCC
Q ss_conf 99999999998191766469821477359999999999999889634122133214776767789898438533456432
Q gi|254780802|r 105 NIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQVINGRGWRSDAPV 184 (869)
Q Consensus 105 ~i~~~k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~pV~wcp~~~t~la~~Ev~~g~~~~~~~~v 184 (869)
+++.++++|++||+++||+++|.|++|.|.++++|+|.+|+++|+||++.++|..|
T Consensus 81 ~~~~~~~~~~~lgi~~D~~~~~~T~~~~~~~~v~~~~~~L~~~G~iy~~~~~v~~~------------------------ 136 (334)
T cd00668 81 YIEEFKEQFKRLGISFDWDRFYRTTDPEYYEAVQWIFLKLYEKGLIYRGERPVRLT------------------------ 136 (334)
T ss_pred HHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCC------------------------
T ss_conf 99999999999689768787611599999999999999999879989505667756------------------------
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEE
Q ss_conf 23347523343034445443210022554322222100014557675453555677777751365320013444323200
Q gi|254780802|r 185 EQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIRWEIVSNTIDQIEEILVYTTRPETIFGASFI 264 (869)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~TtrPeTl~g~~~i 264 (869)
.+|||+++.+++.+.+.+..+
T Consensus 137 -----~~~f~~~~~~~~~l~~~~~~~------------------------------------------------------ 157 (334)
T cd00668 137 -----EQWFLKLSKLKDRLLEALEKN------------------------------------------------------ 157 (334)
T ss_pred -----CEEEEEHHHHHHHHHHHHHHC------------------------------------------------------
T ss_conf -----547778899999999999848------------------------------------------------------
Q ss_pred EEECCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 33024432034541314589998865311112455543025532378610377777415776311234545333222111
Q gi|254780802|r 265 AIAVDHSISEKLSCDNTDIKEFCDEEKQKGTSLSVLDKTEKKGIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIFGC 344 (869)
Q Consensus 265 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~P~~~~~~ipv~~~~~V~~~~GTG~V~~~ 344 (869)
. ++
T Consensus 158 ----------------------------------------------------~--------~~----------------- 160 (334)
T cd00668 158 ----------------------------------------------------E--------IW----------------- 160 (334)
T ss_pred ----------------------------------------------------C--------CC-----------------
T ss_conf ----------------------------------------------------9--------87-----------------
Q ss_pred CCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 34672110122103544321016776555422211210123344583000135646654888999974046775202221
Q gi|254780802|r 345 PFADQRDMDFAKKYGLPIIPIMKRSINHSQDIEEGKAFSGDGIMINSSFLDGMTNTEALQAVMSHLEKQNIKNSPIGKRK 424 (869)
Q Consensus 345 P~h~~~D~~~~~k~glpi~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 424 (869)
| +..++.+..++
T Consensus 161 p------------------------------------------------------~~~~~~~~~~l-------------- 172 (334)
T cd00668 161 P------------------------------------------------------ENVRNRFLNWL-------------- 172 (334)
T ss_pred C------------------------------------------------------HHHHHHHHHHH--------------
T ss_conf 7------------------------------------------------------89999999887--------------
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 11000111221123222223422333468463474200011100100022454210024564211013676443564323
Q gi|254780802|r 425 INFRLRDWCISRQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTWKKIFCVKCGSEALRETDTM 504 (869)
Q Consensus 425 ~~~~l~DW~ISRqr~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~dvl 504 (869)
...++||||||||+||+|+|+|+|++|+.. +..++....++.+++
T Consensus 173 -~~~~~d~~isR~~~wG~~~P~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~ 217 (334)
T cd00668 173 -ENGLRDWCISRQRYWGIPIPAWYCEDCGEV----------------------------------CPKCGKELKRETDVL 217 (334)
T ss_pred -HCCCCCCEEEEECCCCCCCCEEECCCCCCC----------------------------------CCCCCCCCCCCCCCE
T ss_conf -467877525733467875561332567755----------------------------------666531136876534
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 45666433322335556544101356641143344014555443320234555320134787322320022223553232
Q gi|254780802|r 505 DTFVDSSWYYMRYMTPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIGYIEIDEPFKRLFTQGMVVH 584 (869)
Q Consensus 505 d~w~dS~~~~~~~~~~~~~~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~g~~~~~~pf~~l~~~G~v~~ 584 (869)
|+||||+|.++.....+.+... ...+..++|.|+..+|.|++..|..+.......+. ...||+.+++||+++.
T Consensus 218 ~~Wfds~~~~~~~~~~~~~~~~-~~~~~~~~~~di~~~G~D~~~~h~~~~~a~~~a~~------~~~~~~~~~~~g~~~~ 290 (334)
T cd00668 218 DVWFDSGIGYLSALGYPNEEEG-FEEFEYWYPADLHVIGKDIIRFHLIYWPAMLLALF------GKPPPKNVLVHGLVLD 290 (334)
T ss_pred EEEECCCCCCCCCCCCCCCCCH-HHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCC------CCCCHHHEEECCCEEC
T ss_conf 4664175654322678643325-66876179816987156136329999999999844------9850877574201983
Q ss_pred CCCCCCCCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 24332358700130620221025677754411048970640474210000001222210012346335666553013321
Q gi|254780802|r 585 ETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPD 664 (869)
Q Consensus 585 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~~~~~~~~~ 664 (869)
.+|+|||||+||+|++.+++++||||++|||+++.+|.+
T Consensus 291 -----------------------------------------~~G~KMSKS~GN~i~~~~~l~~~g~D~lR~~l~~~~~~~ 329 (334)
T cd00668 291 -----------------------------------------EGGRKMSKSLGNVVDPLDAIEKYGADALRYYLLSAAPEG 329 (334)
T ss_pred -----------------------------------------CCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCC
T ss_conf -----------------------------------------899573886998889899998759489999999429988
Q ss_pred CCCCC
Q ss_conf 11113
Q gi|254780802|r 665 RDIIW 669 (869)
Q Consensus 665 ~d~~~ 669 (869)
+|.+|
T Consensus 330 ~d~~f 334 (334)
T cd00668 330 EDLNF 334 (334)
T ss_pred CCCCC
T ss_conf 89998
No 30
>TIGR00398 metG methionyl-tRNA synthetase; InterPro: IPR002304 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Methionyl-tRNA synthetase (6.1.1.10 from EC) is an alpha 2 dimer that belongs to class Ia. In some species (archaea, eubacteria and eukaryota) a coding sequence, similar to the C-term end of MetRS, is present as an independent gene which is a tRNA binding domain as a dimer. In eubacteria, MetRS can also be splitted in two sub-classes corresponding to the presence of one or two CXXC domain specific to zinc binding. The crystal structures of a number of methionyl-tRNA synthases are known , , .; GO: 0000166 nucleotide binding, 0004825 methionine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006431 methionyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=492.09 Aligned_cols=488 Identities=22% Similarity=0.331 Sum_probs=333.0
Q ss_pred EEEEECCCCCCCCCCCCHHH-HHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCC-HHHHHHHHHHHHHHHH
Q ss_conf 89980778978987400477-977899999977718985567688140205899999980999-9999999999999999
Q gi|254780802|r 36 YFVLEMFPYPSGNIHMGHLR-NYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVH-PKMWTYQNIKVMRKQL 113 (869)
Q Consensus 36 f~i~~~pPy~nG~lHiGH~~-~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~-~~~~~~~~i~~~k~~~ 113 (869)
++||.|-|||||.+|+||++ |++++||++||+||+|++|+|..|.|+||+||+.+|++.|.+ |++++.++.+.+++++
T Consensus 1 ~liTtpl~Y~Ng~pHlGH~~st~~~AD~~~RY~~~~G~~v~f~cGTDEHG~kI~~~A~~~g~tqP~~~vd~~~~~f~~~~ 80 (573)
T TIGR00398 1 ILITTPLPYANGKPHLGHAYSTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTQPKELVDKYHEEFKKLW 80 (573)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 91005776678711210366777899999999852897478985134468788886987089964899999999999999
Q ss_pred HHCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCHHHHH----CCCCCCCCCCCCCCCC
Q ss_conf 981917664698214773599999999999998896341221332147767677898984----3853345643223347
Q gi|254780802|r 114 QSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQVI----NGRGWRSDAPVEQRSL 189 (869)
Q Consensus 114 ~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~pV~wcp~~~t~la~~Ev~----~g~~~~~~~~v~~~~~ 189 (869)
+.++++.| +--+|+|+...+.|+-.|.+|++||+||.+..--.|||.|++=++|-++. +|.|..|+..-...+.
T Consensus 81 ~~lnI~fD--~F~RTTd~~H~~~v~~~f~~L~~nGyIY~~~~~g~YC~~c~~Fl~dr~~~~~yv~g~CP~c~~~~~~gd~ 158 (573)
T TIGR00398 81 KWLNISFD--RFIRTTDEEHKEIVQKIFQKLLENGYIYEKEIKGLYCPECESFLPDRKLVDDYVEGTCPKCGSEDARGDH 158 (573)
T ss_pred HHHCCCCC--CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 87284567--6546768888999999999987537741100353234756653622320013346748868877777877
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECC
Q ss_conf 52334303444544321002255432222210001455767545355567777775136532001344432320033024
Q gi|254780802|r 190 PQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIRWEIVSNTIDQIEEILVYTTRPETIFGASFIAIAVD 269 (869)
Q Consensus 190 ~~~~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~TtrPeTl~g~~~i~v~~~ 269 (869)
+.-+-.++-|--
T Consensus 159 --------------------------------------------------------c~~Cg~~leP~~------------ 170 (573)
T TIGR00398 159 --------------------------------------------------------CEVCGRHLEPFE------------ 170 (573)
T ss_pred --------------------------------------------------------CCCCCCCCCCCH------------
T ss_conf --------------------------------------------------------554655368500------------
Q ss_pred CCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 43203454131458999886531111245554302553237861037777741577631123454533322211134672
Q gi|254780802|r 270 HSISEKLSCDNTDIKEFCDEEKQKGTSLSVLDKTEKKGIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIFGCPFADQ 349 (869)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~P~~~~~~ipv~~~~~V~~~~GTG~V~~~P~h~~ 349 (869)
.++| +-.+ .+.-
T Consensus 171 --------------------------------------------Li~P---~c~~---~~~~------------------ 182 (573)
T TIGR00398 171 --------------------------------------------LINP---RCVI---CKNK------------------ 182 (573)
T ss_pred --------------------------------------------HCCC---CEEE---ECCE------------------
T ss_conf --------------------------------------------1187---0255---4880------------------
Q ss_pred CCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCH--HHHH---
Q ss_conf 11012210354432101677655542221121012334458300013564665488899997404677520--2221---
Q gi|254780802|r 350 RDMDFAKKYGLPIIPIMKRSINHSQDIEEGKAFSGDGIMINSSFLDGMTNTEALQAVMSHLEKQNIKNSPI--GKRK--- 424 (869)
Q Consensus 350 ~D~~~~~k~glpi~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~l~~~~~~~~~~--~~~~--- 424 (869)
+++.+...+ | .....-.+.+.+++.+..-...+. .++.
T Consensus 183 --------------~~~~~~~hy--------------------F---f~L~~~~~~l~~~~~~~~~~~~~~~~~~n~~~~ 225 (573)
T TIGR00398 183 --------------PELRDSEHY--------------------F---FRLSAFEKELEEWIKKNPESKSPASNVKNVAKQ 225 (573)
T ss_pred --------------EEEECCCCC--------------------C---CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf --------------025135452--------------------2---353688899999861488424218999999889
Q ss_pred --HHHHCCCCCCCCCCC---CCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf --110001112211232---222234223334684634742000111001000224542100245642110136764435
Q gi|254780802|r 425 --INFRLRDWCISRQRS---WGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTWKKIFCVKCGSEALR 499 (869)
Q Consensus 425 --~~~~l~DW~ISRqr~---WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r 499 (869)
+.-.|+||||||+.. ||+|+|-=..+
T Consensus 226 ~~~~~GL~D~~ItR~~~~lkWG~pvP~~~~p------------------------------------------------- 256 (573)
T TIGR00398 226 NWIKGGLKDLAITRDLVDLKWGIPVPNDGAP------------------------------------------------- 256 (573)
T ss_pred HHHCCCCCCCEEECCCCCCCCCCCCCCCCCC-------------------------------------------------
T ss_conf 9850687430110364412115317898987-------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 64323456664333223355565441013566411433440145554433202345553201347873223200222235
Q gi|254780802|r 500 ETDTMDTFVDSSWYYMRYMTPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIGYIEIDEPFKRLFTQ 579 (869)
Q Consensus 500 ~~dvld~w~dS~~~~~~~~~~~~~~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~g~~~~~~pf~~l~~~ 579 (869)
.-|+-||||.-+-|+.....-....-..+.+++||+.+- .+.-++|+ +|- -...|+.+|..
T Consensus 257 -~~~~YVW~DAl~gYiss~~~~~~~~~~~~~~~~~W~~~~----~~~~~~Hf------------IGK--DI~~FH~iyWP 317 (573)
T TIGR00398 257 -NKVVYVWFDALIGYISSLKALGIEKGLTEDWKKWWNNNS----EDAELIHF------------IGK--DIVRFHTIYWP 317 (573)
T ss_pred -CCEEEEEECHHHHHHHHHHHCCCCCCCCHHHHHHCCCCC----CCCEEEEE------------ECC--CCCCHHHHHHH
T ss_conf -967998720345699997521335687578998626888----65027888------------424--12020333445
Q ss_pred CCCCCCCCCCCCCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCC-CCCC-CCHHHHHHHH
Q ss_conf 5323224332358700130620221025677754411048970640474210000001222210-0123-4633566655
Q gi|254780802|r 580 GMVVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMK-VIKS-YGADTARLFV 657 (869)
Q Consensus 580 G~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~-~i~~-yGaD~lRl~~ 657 (869)
+|.+..+ .|+-.|..| .. ++.+..+|+|||||+||||+|.+ +++. ||+|.+|+|+
T Consensus 318 a~L~~~~--------eN~~lP~q~--------------~~-hGyl~~eG~KMSKS~G~vv~~~~~~~~~~~g~D~lRYYl 374 (573)
T TIGR00398 318 AMLMGLG--------ENLPLPTQV--------------FA-HGYLTVEGQKMSKSLGNVVDPEDDLLARGYGADILRYYL 374 (573)
T ss_pred HHHHHCC--------CHHHHHHHH--------------EE-EEEEEECCEEECCCCCCEECHHHHHHHCCCCHHHHHHHH
T ss_conf 8885112--------100212132--------------43-016884784432324753232178764478805788899
Q ss_pred HHCCCCCCCCCCCCCCH---------HHHHHHHHHHHHHHHHHHCCCC-----------------CCCCHHHHHHHHHHH
Q ss_conf 30133211111343210---------1145567788999997630246-----------------678975699999999
Q gi|254780802|r 658 LSDSPPDRDIIWSNKGV---------DSTYQFIQQIWRLIYNAKDELQ-----------------TSSTKKDISLISKST 711 (869)
Q Consensus 658 ~~~~~~~~d~~~s~~~i---------~~~~rfl~kl~~l~~~~~~~~~-----------------~~~~~~D~~ils~~~ 711 (869)
+...+.++|.+||++.+ ....||++|+..++....++.- +...+.|..++..++
T Consensus 375 ~~~~~~~~D~~F~~~~f~~r~N~~L~n~lGNl~nR~~~f~~k~f~g~~~~~~~~nfqfqeifqneP~l~~~~~~l~~~~~ 454 (573)
T TIGR00398 375 LKEVPLGKDGDFSWEDFVERVNADLANDLGNLLNRTLGFIKKYFNGVLPSVDETNFQFQEIFQNEPKLTEEDKELLKKIN 454 (573)
T ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 86424344765688999999768877655589999999998873562110101234566665037652235668999999
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC------CCHHHHHHH---HHHHHHHHHCCCHHHHHHHH
Q ss_conf 999999999881688999999999999999999862110002------217999999---99999999722343899999
Q gi|254780802|r 712 KFLERIEENYQNLSFNKAVANIHELVNVISKPLMEIAKKKSN------ADRISTIRY---ILEKLIIMMSPMIPHLAEEC 782 (869)
Q Consensus 712 ~~i~~v~~~~e~~~f~~ai~~i~~f~n~ls~~y~~~~k~~~~------~~~~~~l~~---vl~~l~~lLaPi~PhiaEEi 782 (869)
.+.+.+.+++++++|++|+..|+.++...|++..+....... ....+++.. +++.+..||.||||.+|+.|
T Consensus 455 ~~~~~~~~~~~~~~f~~Al~~~~~L~~~gNkyi~~~~PW~l~k~~~~~~~l~~~~~~~~e~~~~l~~Ll~P~~P~~~~k~ 534 (573)
T TIGR00398 455 ETLEQIDKALESFEFRKALEEILKLADRGNKYIDDNEPWELAKQSEKLKELLAVCSLVAELIRVLSILLYPFMPKLSEKI 534 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 99999999886203899999999999986147652388713257067999999999999999999998424102478999
Q ss_pred HHHCCCC
Q ss_conf 9982899
Q gi|254780802|r 783 WQLLGNA 789 (869)
Q Consensus 783 w~~Lg~~ 789 (869)
.+.||-+
T Consensus 535 ~~~~n~~ 541 (573)
T TIGR00398 535 LKLLNFE 541 (573)
T ss_pred HHHHCCC
T ss_conf 9983887
No 31
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=0 Score=488.28 Aligned_cols=488 Identities=23% Similarity=0.341 Sum_probs=337.0
Q ss_pred CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 88838998077897898740047797789999997771898556768814020589999998099999999999999999
Q gi|254780802|r 32 NKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRK 111 (869)
Q Consensus 32 ~~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~ 111 (869)
...+|+||.|.|||||.||+||+.+++.+||+|||+||+|++|+|..|.|.||+||+..|++.|++|++++.++.+.+++
T Consensus 3 ~~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~ 82 (558)
T COG0143 3 MMKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKE 82 (558)
T ss_pred CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 78738995589889998641367888789999999982697589995147877788999998599989999999999999
Q ss_pred HHHHCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 99981917664698214773599999999999998896341221332147767677898984385334564322334752
Q gi|254780802|r 112 QLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQVINGRGWRSDAPVEQRSLPQ 191 (869)
Q Consensus 112 ~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~pV~wcp~~~t~la~~Ev~~g~~~~~~~~v~~~~~~~ 191 (869)
.++.++++.| +-.+|+++.+.+++|..|.+|+++|+||.+..++.|||+|++-+.|.+|+ |.|..|+....+.+
T Consensus 83 ~~~~l~IsfD--~F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~-g~cp~cg~~~a~GD--- 156 (558)
T COG0143 83 LFKALNISFD--NFIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVE-GTCPKCGGEDARGD--- 156 (558)
T ss_pred HHHHHCCCCC--EECCCCCHHHHHHHHHHHHHHHHCCCEECCCEEEEECCCCCCCCCCHHEE-CCCCCCCCCCCCCC---
T ss_conf 9998098543--00168977799999999999997898731443564735435645621020-55898675345764---
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCC
Q ss_conf 33430344454432100225543222221000145576754535556777777513653200134443232003302443
Q gi|254780802|r 192 WFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIRWEIVSNTIDQIEEILVYTTRPETIFGASFIAIAVDHS 271 (869)
Q Consensus 192 ~~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~TtrPeTl~g~~~i~v~~~~~ 271 (869)
++ +-+-.+.-|..
T Consensus 157 -----------------------------~C------------------------e~Cg~~~~P~~-------------- 169 (558)
T COG0143 157 -----------------------------QC------------------------ENCGRTLDPTE-------------- 169 (558)
T ss_pred -----------------------------HH------------------------HHCCCCCCCHH--------------
T ss_conf -----------------------------34------------------------32267579212--------------
Q ss_pred CCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 20345413145899988653111124555430255323786103777774157763112345453332221113467211
Q gi|254780802|r 272 ISEKLSCDNTDIKEFCDEEKQKGTSLSVLDKTEKKGIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIFGCPFADQRD 351 (869)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~P~~~~~~ipv~~~~~V~~~~GTG~V~~~P~h~~~D 351 (869)
.++|.. ++.+.- | +
T Consensus 170 ------------------------------------------l~~p~~------~i~g~~--p------~---------- 183 (558)
T COG0143 170 ------------------------------------------LINPVC------VISGAT--P------E---------- 183 (558)
T ss_pred ------------------------------------------CCCCEE------EEECCC--C------C----------
T ss_conf ------------------------------------------179816------864797--6------4----------
Q ss_pred CHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHH--HH---
Q ss_conf 0122103544321016776555422211210123344583000135646654888999974046775202221--11---
Q gi|254780802|r 352 MDFAKKYGLPIIPIMKRSINHSQDIEEGKAFSGDGIMINSSFLDGMTNTEALQAVMSHLEKQNIKNSPIGKRK--IN--- 426 (869)
Q Consensus 352 ~~~~~k~glpi~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~l~~~~~~~~~~~~~~--~~--- 426 (869)
+.+. .+.+ +...+....+.+++++......|.+++. .+
T Consensus 184 --------------~r~~--------------------~hyF---f~L~~~~~~L~~~~~~~~~~~~p~~~~ne~~~~i~ 226 (558)
T COG0143 184 --------------VREE--------------------EHYF---FRLSKFQDKLLEWYESNPDFIWPANRRNEVLNFLK 226 (558)
T ss_pred --------------CCCC--------------------EEEE---EEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf --------------3354--------------------0599---88798699999999739654588689999999997
Q ss_pred HHCCCCCCCC-CCCCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 0001112211-232222234223334684634742000111001000224542100245642110136764435643234
Q gi|254780802|r 427 FRLRDWCISR-QRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTWKKIFCVKCGSEALRETDTMD 505 (869)
Q Consensus 427 ~~l~DW~ISR-qr~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~dvld 505 (869)
-.|+||+||| ...||+|+|- .+ + -++-
T Consensus 227 ~GL~d~~IsR~~~~WGipvP~--~p--~------------------------------------------------kv~Y 254 (558)
T COG0143 227 EGLKDLSITRTDLDWGIPVPG--DP--G------------------------------------------------KVIY 254 (558)
T ss_pred CCCCCCCEECCCCCCCCCCCC--CC--C------------------------------------------------CEEE
T ss_conf 668664314589887725799--99--8------------------------------------------------7799
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHH----HHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 566643332233555654410135664114334----4014555443320234555320134787322320022223553
Q gi|254780802|r 506 TFVDSSWYYMRYMTPHAKDPINKELVRQWFPVD----QYIGGIEHAVLHLLYARFFAHILKKIGYIEIDEPFKRLFTQGM 581 (869)
Q Consensus 506 ~w~dS~~~~~~~~~~~~~~~~~~e~~~~~~P~D----~~i~g~d~~~~~~~~~r~~~~~l~~~g~~~~~~pf~~l~~~G~ 581 (869)
||||.-+-|+..+.-... ..+.+.+++|+|.| +.+=|+|-+.- ++-+|-..|+..+.- ..+.++.||
T Consensus 255 VWfDAligYisa~~~~~~-~~~~~~~~~~W~~~~~e~vhfIGKDii~F---Hav~wPamL~~~~~~----lP~~i~ahg- 325 (558)
T COG0143 255 VWFDALIGYISALGELAE-IGDDEDFKKFWPADDTELVHFIGKDIIRF---HAVYWPAMLMAAGLP----LPTRIFAHG- 325 (558)
T ss_pred EEECCHHHHHHHHCCHHC-CCCHHHHHHHCCCCCCEEEEEECCCCCCC---HHHHHHHHHHHCCCC----CCCEEEEEE-
T ss_conf 963448899999541210-58767898637788845999962456743---245789999738999----887798401-
Q ss_pred CCCCCCCCCCCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 23224332358700130620221025677754411048970640474210000001222210012346335666553013
Q gi|254780802|r 582 VVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDS 661 (869)
Q Consensus 582 v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~~~~~~ 661 (869)
.+..+|+|||||+||+|+|.++++.||+|.+|+|++...
T Consensus 326 -----------------------------------------~l~~~G~KmSKSrG~~V~~~~~~~~~~~D~lRYyL~~~~ 364 (558)
T COG0143 326 -----------------------------------------FLTLEGQKMSKSRGNVVDPDELLEQYGVDALRYYLAREL 364 (558)
T ss_pred -----------------------------------------EEEECCCCCCCCCCCEEEHHHHHHHCCCHHHHHHHHHHC
T ss_conf -----------------------------------------399779412442881871799998748238579888737
Q ss_pred CCCCCCCCCCCCHH---------HHHHHHHHHHHHHHHHHCCCCCCC----CHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 32111113432101---------145567788999997630246678----97569999999999999999988168899
Q gi|254780802|r 662 PPDRDIIWSNKGVD---------STYQFIQQIWRLIYNAKDELQTSS----TKKDISLISKSTKFLERIEENYQNLSFNK 728 (869)
Q Consensus 662 ~~~~d~~~s~~~i~---------~~~rfl~kl~~l~~~~~~~~~~~~----~~~D~~ils~~~~~i~~v~~~~e~~~f~~ 728 (869)
|.++|.+||++.+. ...++++|+..++....++..+.. ...|..++..+..+.+.+.++|++++|++
T Consensus 365 p~~~D~dFs~~~f~~rvN~dL~n~lgNl~~R~l~fi~k~~~g~vp~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~ 444 (558)
T COG0143 365 PEGSDGDFSWEDFVERVNADLANKLGNLANRTLGFINKYFDGVVPAAGAPDLEEDEELLALAREALEAVAEAMEKYEFRK 444 (558)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 78888888999999999899887888999999999975259968865455534569999999999999999998625999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCC----CCH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEECCC
Q ss_conf 9999999999999999862110002----217----99999999999999722343899999998289983551788
Q gi|254780802|r 729 AVANIHELVNVISKPLMEIAKKKSN----ADR----ISTIRYILEKLIIMMSPMIPHLAEECWQLLGNAGLVAQQKW 797 (869)
Q Consensus 729 ai~~i~~f~n~ls~~y~~~~k~~~~----~~~----~~~l~~vl~~l~~lLaPi~PhiaEEiw~~Lg~~~~i~~~~W 797 (869)
|+..+++++...++|..+....... .++ ..+..++++.+..||+||||.+|+++|++||.+.......|
T Consensus 445 Al~~i~~l~~~~N~Yi~~~~PW~l~k~~~~~~~~~vl~~~~~~~r~la~ll~P~mP~~a~ki~~~L~~~~~~~~~~~ 521 (558)
T COG0143 445 ALEEIMALASRANKYIDEQAPWKLAKEDKRERLATVLYLALELVRVLAILLYPFMPETAEKIWDQLGLEEDARNFTW 521 (558)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCHH
T ss_conf 99999999999988764289802320472999999999999999999998158686029999998288633210003
No 32
>cd00814 MetRS_core This is the catalytic core domain of methionine tRNA synthetase (MetRS). This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and a anti-codon binding domain functions as a monomer. However, in some species, the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion that IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=100.00 E-value=0 Score=351.01 Aligned_cols=132 Identities=24% Similarity=0.333 Sum_probs=125.6
Q ss_pred CEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 38998077897898740047797789999997771898556768814020589999998099999999999999999999
Q gi|254780802|r 35 KYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQLQ 114 (869)
Q Consensus 35 kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~~~ 114 (869)
||+|+.||||+||.||+||++++++.|+++||+||+||+|.|..|.|.||.+|+..|++.++++.++++++++.++++|+
T Consensus 1 ~~~v~~~~Ptv~g~lHiGHar~~v~~Dil~R~lr~~G~~V~~vt~~Dd~~~kIi~kA~~~g~~~~el~~~y~~~~~~~~~ 80 (319)
T cd00814 1 KVLITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKELFK 80 (319)
T ss_pred CEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 98996899878898553306889999999999996599569968777870899999998399879999999999999999
Q ss_pred HCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCC
Q ss_conf 819176646982147735999999999999988963412213321477676778
Q gi|254780802|r 115 SIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLA 168 (869)
Q Consensus 115 ~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~pV~wcp~~~t~la 168 (869)
+||+. ++....|+++.+...++..|.+|.++|++|++...+.|||.|+..++
T Consensus 81 ~L~I~--~d~~~r~~~~~~~~~v~~~i~~L~~~G~~y~~~~~~~y~~~~~~~~~ 132 (319)
T cd00814 81 WLNIS--FDYFGRTTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLP 132 (319)
T ss_pred HCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCEEEECCCCCCCCC
T ss_conf 84998--78676678806899999999999978988884102636588764564
No 33
>KOG0436 consensus
Probab=100.00 E-value=0 Score=335.43 Aligned_cols=471 Identities=22% Similarity=0.302 Sum_probs=318.4
Q ss_pred CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 88838998077897898740047797789999997771898556768814020589999998099999999999999999
Q gi|254780802|r 32 NKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRK 111 (869)
Q Consensus 32 ~~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~ 111 (869)
+.+.|++|.|-=|+|..+|+||+++-.++|+++||||++|..|.|.-|.|-|||-|+.+|.-+|..|.+.....-+.+++
T Consensus 37 ~~~~~~lTTPifYvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatnG~~P~e~cDr~s~~f~q 116 (578)
T KOG0436 37 EGETFVLTTPIFYVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATNGRNPPELCDRISQSFRQ 116 (578)
T ss_pred CCCEEEEECCEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 78505984551314788514579999999999999863588068603777544224336865599907888665199999
Q ss_pred HHHHCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 99981917664698214773599999999999998896341221332147767677898984385334564322334752
Q gi|254780802|r 112 QLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQVINGRGWRSDAPVEQRSLPQ 191 (869)
Q Consensus 112 ~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~pV~wcp~~~t~la~~Ev~~g~~~~~~~~v~~~~~~~ 191 (869)
.++..|+.++ +-.+|+||...+.||.....+..+|+||+|.|--.||-.|+|-..+.+|...-|.-
T Consensus 117 L~k~~gi~yt--~FIRTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k~p~~~------------ 182 (578)
T KOG0436 117 LWKDAGIAYT--KFIRTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVLKNPCPP------------ 182 (578)
T ss_pred HHHHHCCCHH--HEEECCCCHHHHHHHHHHHHHHHCCCEEEECCCCEEECCCCCCCCHHHHHCCCCCC------------
T ss_conf 9998296334--21224891089999999999986783652023516860530028788871388999------------
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCC
Q ss_conf 33430344454432100225543222221000145576754535556777777513653200134443232003302443
Q gi|254780802|r 192 WFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIRWEIVSNTIDQIEEILVYTTRPETIFGASFIAIAVDHS 271 (869)
Q Consensus 192 ~~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~TtrPeTl~g~~~i~v~~~~~ 271 (869)
|+.... |+ |+..+|-. |..
T Consensus 183 ----------------------------------gk~vsm------------------------Es--g~~vv~~k-E~N 201 (578)
T KOG0436 183 ----------------------------------GKVVSM------------------------ES--GNPVVWRK-EDN 201 (578)
T ss_pred ----------------------------------CCEEEE------------------------CC--CCCEEEEC-CCC
T ss_conf ----------------------------------854540------------------------46--89426761-565
Q ss_pred CCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 20345413145899988653111124555430255323786103777774157763112345453332221113467211
Q gi|254780802|r 272 ISEKLSCDNTDIKEFCDEEKQKGTSLSVLDKTEKKGIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIFGCPFADQRD 351 (869)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~P~~~~~~ipv~~~~~V~~~~GTG~V~~~P~h~~~D 351 (869)
|.-.+..... . +.-...+||= ||.|+ +
T Consensus 202 Y~FrLSkfqk---------------------~-----l~d~lrkNP~------------fvqPs---------~------ 228 (578)
T KOG0436 202 YFFRLSKFQK---------------------P-----LEDHLRKNPR------------FVQPS---------Y------ 228 (578)
T ss_pred EEEEHHHHHH---------------------H-----HHHHHHCCCC------------CCCCH---------H------
T ss_conf 0100875512---------------------8-----9999844997------------46760---------7------
Q ss_pred CHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCC
Q ss_conf 01221035443210167765554222112101233445830001356466548889999740467752022211100011
Q gi|254780802|r 352 MDFAKKYGLPIIPIMKRSINHSQDIEEGKAFSGDGIMINSSFLDGMTNTEALQAVMSHLEKQNIKNSPIGKRKINFRLRD 431 (869)
Q Consensus 352 ~~~~~k~glpi~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~D 431 (869)
....+.++++.. |+|
T Consensus 229 --------------------------------------------------~~~qVl~~lktg---------------lpD 243 (578)
T KOG0436 229 --------------------------------------------------FHNQVLSWLKTG---------------LPD 243 (578)
T ss_pred --------------------------------------------------HHHHHHHHHHCC---------------CCC
T ss_conf --------------------------------------------------788999999737---------------986
Q ss_pred CCCCC--CC-CCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 12211--23-2222234223334684634742000111001000224542100245642110136764435643234566
Q gi|254780802|r 432 WCISR--QR-SWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTWKKIFCVKCGSEALRETDTMDTFV 508 (869)
Q Consensus 432 W~ISR--qr-~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~dvld~w~ 508 (869)
--||| +| .||+|.|- ++.. ++-+||
T Consensus 244 lSISRpsarl~WGIPvP~---ddsQ-------------------------------------------------tIYVWf 271 (578)
T KOG0436 244 LSISRPSARLDWGIPVPG---DDSQ-------------------------------------------------TIYVWF 271 (578)
T ss_pred CCCCCHHHHCCCCCCCCC---CCCC-------------------------------------------------EEEEEH
T ss_conf 532570330134888899---9862-------------------------------------------------698759
Q ss_pred CCCCCCCCCC-CCCCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6433322335-556544101356641143344014555443320234555320134787322320022223553232243
Q gi|254780802|r 509 DSSWYYMRYM-TPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIGYIEIDEPFKRLFTQGMVVHETY 587 (869)
Q Consensus 509 dS~~~~~~~~-~~~~~~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~g~~~~~~pf~~l~~~G~v~~~~~ 587 (869)
|.-.-|+.-. .|..+. .-+..+..|||+...+-|+|-.--| +-.|...|+..|.- +-+.++.||+..
T Consensus 272 DAL~nYiSvig~~~~~~-N~k~~ls~~wPat~HvIGKDIlrFH---avYWPafLmaAGlp----lP~~I~vHghwt---- 339 (578)
T KOG0436 272 DALLNYISVIGYPNKQQ-NLKTALSFGWPATLHVIGKDILRFH---AVYWPAFLMAAGLP----LPKMIFVHGHWT---- 339 (578)
T ss_pred HHHHHHHHHHCCCCHHC-CCCCEEECCCCCEEEEHHHHHHHHH---HHHHHHHHHHCCCC----CCCEEEEEEEEE----
T ss_conf 98865788606882102-4000152378751232014456645---54518999866999----861798841265----
Q ss_pred CCCCCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 32358700130620221025677754411048970640474210000001222210012346335666553013321111
Q gi|254780802|r 588 YQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDI 667 (869)
Q Consensus 588 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~~~~~~~~~~d~ 667 (869)
.+|.|||||+||||+|.+++++||+|++|+|++-.+.++.|-
T Consensus 340 --------------------------------------~ngmKMsKSLGNvvdP~~l~~kygvD~vRyflLr~~~l~~Dg 381 (578)
T KOG0436 340 --------------------------------------KNGMKMSKSLGNVVDPFELVQKYGVDAVRYFLLREGELGNDG 381 (578)
T ss_pred --------------------------------------ECCEECCHHHCCCCCHHHHHHHHCCCCEEEEEEECCCCCCCC
T ss_conf --------------------------------------422210212046468899998838441566755535207888
Q ss_pred CCCCCCHHHHHH-HHHH-HHHHHHHHHC----------C-CCC--CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf 134321011455-6778-8999997630----------2-466--78975699999999999999999881688999999
Q gi|254780802|r 668 IWSNKGVDSTYQ-FIQQ-IWRLIYNAKD----------E-LQT--SSTKKDISLISKSTKFLERIEENYQNLSFNKAVAN 732 (869)
Q Consensus 668 ~~s~~~i~~~~r-fl~k-l~~l~~~~~~----------~-~~~--~~~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai~~ 732 (869)
+|+++.+....+ -|.+ +-+|+..... . +.. .....+..+.+.++++.+.+.++|++|++..|+.+
T Consensus 382 dy~eekl~k~~n~~La~~lG~LlnRc~gkkln~sn~e~~l~~~s~~v~ae~~~lv~~v~kl~ev~a~~~d~f~~~~ale~ 461 (578)
T KOG0436 382 DYSEEKLIKIVNAHLANTLGNLLNRCLGKKLNISNCESTLVVDSPTVAAEGEPLVDTVEKLPEVAATNYDNFSLYSALEA 461 (578)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 81299999999999999998998887521357001563002477425531452899999758999854033309999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCC----------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC-EEECCC
Q ss_conf 99999999999986211000221----------799999999999999722343899999998289983-551788
Q gi|254780802|r 733 IHELVNVISKPLMEIAKKKSNAD----------RISTIRYILEKLIIMMSPMIPHLAEECWQLLGNAGL-VAQQKW 797 (869)
Q Consensus 733 i~~f~n~ls~~y~~~~k~~~~~~----------~~~~l~~vl~~l~~lLaPi~PhiaEEiw~~Lg~~~~-i~~~~W 797 (869)
+....|..+.+...........+ ...+..++|+.+.+||.|++|-++.++..+||-... -++..|
T Consensus 462 V~si~n~~ntlvq~~aPWkl~~dsq~~~~~la~~~~~~le~lrv~~illqpv~Psls~~llsqlgvsk~qrsl~~~ 537 (578)
T KOG0436 462 VLSIGNAGNTLVQQRAPWKLFKDSQVSAEELAKVLHIILEVLRVIGILLQPVAPSLSLRLLSQLGVSKDQRSLITW 537 (578)
T ss_pred HHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHCCCCCC
T ss_conf 9999975315665068702111467368999999999999999999987235653679999870987433021010
No 34
>KOG1247 consensus
Probab=100.00 E-value=5.4e-32 Score=237.28 Aligned_cols=490 Identities=16% Similarity=0.208 Sum_probs=315.9
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCHHHHH-HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 7888838998077897898740047797-789999997771898556768814020589999998099999999999999
Q gi|254780802|r 30 GKNKKKYFVLEMFPYPSGNIHMGHLRNY-VIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKV 108 (869)
Q Consensus 30 ~~~~~kf~i~~~pPy~nG~lHiGH~~~~-t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~ 108 (869)
..|+-.-+|+.+-||.|..+|.|....- .-+||+|||.+.+|++.+|..|.|--|+.+|..|.|.+..|++.-+++.+.
T Consensus 10 ~~n~rnilitsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatetkaleeg~tP~elcdKyh~i 89 (567)
T KOG1247 10 APNERNILITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETKALEEGLTPQELCDKYHGI 89 (567)
T ss_pred CCCCCCEEEECCCCEECCCCCCCCEEEEEEEHHHHCCCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHCCHH
T ss_conf 77756633512532021665336646677644230123667787447851566540466799987569878988722126
Q ss_pred HHHHHHHCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99999981917664698214773599999999999998896341221332147767677898984385334564322334
Q gi|254780802|r 109 MRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQVINGRGWRSDAPVEQRS 188 (869)
Q Consensus 109 ~k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~pV~wcp~~~t~la~~Ev~~g~~~~~~~~v~~~~ 188 (869)
.+.-.+=+++.+|-.. +|+.+..-+..|-+|.+|+++|++-...--+.||++|++-|||..| +|+|..|++.-.+.+
T Consensus 90 hk~vy~Wf~IdfD~fg--rtTT~~qT~i~Q~iF~kl~~ng~~se~tv~qLyC~vc~~fladr~v-eg~cp~C~yd~ARGD 166 (567)
T KOG1247 90 HKVVYDWFKIDFDEFG--RTTTKTQTEICQDIFSKLYDNGYLSEQTVKQLYCEVCDTFLADRFV-EGKCPFCGYDDARGD 166 (567)
T ss_pred HHHHHHHHCCCCCCCC--CCCCCCHHHHHHHHHHCHHHCCCCCCCEEEEEEEHHHCCCCCCHHH-HCCCCCCCCCCCCCH
T ss_conf 7888875156621037--6067113277898862521157711000115775211240340443-033788877653205
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEC
Q ss_conf 75233430344454432100225543222221000145576754535556777777513653200134443232003302
Q gi|254780802|r 189 LPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIRWEIVSNTIDQIEEILVYTTRPETIFGASFIAIAV 268 (869)
Q Consensus 189 ~~~~~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~TtrPeTl~g~~~i~v~~ 268 (869)
|++-.|+.... +....|
T Consensus 167 --------------------------------qcd~cG~l~N~-------------------------------~el~~p 183 (567)
T KOG1247 167 --------------------------------QCDKCGKLVNA-------------------------------AELKIP 183 (567)
T ss_pred --------------------------------HHHHHHHHCCH-------------------------------HHHCCC
T ss_conf --------------------------------66666542378-------------------------------772385
Q ss_pred CCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEEEEE-ECCCCCCCCCCCCCCCCCCC
Q ss_conf 44320345413145899988653111124555430255323786103777774157763-11234545333222111346
Q gi|254780802|r 269 DHSISEKLSCDNTDIKEFCDEEKQKGTSLSVLDKTEKKGIYTGIHVKHPLNPNVVIPVY-IANFVFMNYGTGAIFGCPFA 347 (869)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~P~~~~~~ipv~-~~~~V~~~~GTG~V~~~P~h 347 (869)
++-+- .+-|++ ...|+
T Consensus 184 ----------------------------------------------kc~ic--~~~p~~~~t~h~--------------- 200 (567)
T KOG1247 184 ----------------------------------------------KCKIC--QAGPVVRQTQHL--------------- 200 (567)
T ss_pred ----------------------------------------------CHHEE--CCCCEEEEEEEE---------------
T ss_conf ----------------------------------------------20100--267735541279---------------
Q ss_pred CCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCH--HHHHH
Q ss_conf 7211012210354432101677655542221121012334458300013564665488899997404677520--22211
Q gi|254780802|r 348 DQRDMDFAKKYGLPIIPIMKRSINHSQDIEEGKAFSGDGIMINSSFLDGMTNTEALQAVMSHLEKQNIKNSPI--GKRKI 425 (869)
Q Consensus 348 ~~~D~~~~~k~glpi~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~l~~~~~~~~~~--~~~~~ 425 (869)
.++.......+-+++.+......|. +...+
T Consensus 201 ------------------------------------------------Fl~L~kl~~~lee~~~~~~~~~~WS~Na~~it 232 (567)
T KOG1247 201 ------------------------------------------------FLSLDKLEPRLEEWLRRTLVEGDWSQNAQNIT 232 (567)
T ss_pred ------------------------------------------------EEEHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
T ss_conf ------------------------------------------------98757767899999973054577761167899
Q ss_pred HHH----CCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 100----0111221123222223422333468463474200011100100022454210024564211013676443564
Q gi|254780802|r 426 NFR----LRDWCISRQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTWKKIFCVKCGSEALRET 501 (869)
Q Consensus 426 ~~~----l~DW~ISRqr~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~ 501 (869)
+.+ ++.-||.|..-||+|+|.-.- +.
T Consensus 233 ~sWlk~gl~pRCiTRDLkWGtpVPle~f--------------------------------------------------k~ 262 (567)
T KOG1247 233 RSWLKDGLKPRCITRDLKWGTPVPLEKF--------------------------------------------------KD 262 (567)
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCHHHH--------------------------------------------------CC
T ss_conf 9999746665200022556887674551--------------------------------------------------66
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 32345666433322335556544101356641143344014555443320234555320134787322320022223553
Q gi|254780802|r 502 DTMDTFVDSSWYYMRYMTPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIGYIEIDEPFKRLFTQGM 581 (869)
Q Consensus 502 dvld~w~dS~~~~~~~~~~~~~~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~g~~~~~~pf~~l~~~G~ 581 (869)
.|+-+|||..+-|+..+.-. .+.+++|+-- .++.-++ .|. | .-..||++++..++
T Consensus 263 KVfYVWFDA~IGYlsit~~y------t~ew~kWwkn------pE~v~Ly----qFm-------g--KDNVpFHtviFP~s 317 (567)
T KOG1247 263 KVFYVWFDAPIGYLSITKNY------TDEWEKWWKN------PENVELY----QFM-------G--KDNVPFHTVIFPCS 317 (567)
T ss_pred CEEEEEECCCCEEEEEEHHH------HHHHHHHHCC------HHHHHHH----HHH-------C--CCCCCCEEEECCHH
T ss_conf 27999973751378850666------6789998469------7440398----874-------6--67776146641245
Q ss_pred CCCCCCCCCCCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCCC-CCCHHHHHHHHHHC
Q ss_conf 23224332358700130620221025677754411048970640474210000001222210012-34633566655301
Q gi|254780802|r 582 VVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIK-SYGADTARLFVLSD 660 (869)
Q Consensus 582 v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~-~yGaD~lRl~~~~~ 660 (869)
.++.. .||....|+..+ +.+..+..|-|||+|-.|=-.++.+ .-++|.-|+|+++.
T Consensus 318 ~lgt~--------en~t~v~~l~aT---------------eYLnyE~gKFSKSrgvGvFG~~aqd~gi~~~vWRyYLl~~ 374 (567)
T KOG1247 318 QLGTE--------ENYTVVHHLSAT---------------EYLNYEDGKFSKSRGVGVFGNDAQDTGIPASVWRYYLLYI 374 (567)
T ss_pred HHCCC--------CCCHHHEEECHH---------------HHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
T ss_conf 41677--------773321000154---------------4200246740145652220554335799888889887522
Q ss_pred CCCCCCCCCCCCC---------HHHHHHHHHHHHHHHHHHHCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 3321111134321---------01145567788999997630246678--975699999999999999999881688999
Q gi|254780802|r 661 SPPDRDIIWSNKG---------VDSTYQFIQQIWRLIYNAKDELQTSS--TKKDISLISKSTKFLERIEENYQNLSFNKA 729 (869)
Q Consensus 661 ~~~~~d~~~s~~~---------i~~~~rfl~kl~~l~~~~~~~~~~~~--~~~D~~ils~~~~~i~~v~~~~e~~~f~~a 729 (869)
-|-.+|..||++. +.+..+|+||+..++..-.+...+.. +..|..+++.++....+..++||.-++++|
T Consensus 375 RPEssDs~Fsw~df~~k~nseLl~NLGNFvNR~l~fv~~~~~g~Vp~~~~~~~~~~~~~dv~~~~~~y~~~me~vklr~~ 454 (567)
T KOG1247 375 RPESSDSAFSWDDFVLKVNSELLNNLGNFVNRVLKFVAAKYNGVVPEMELTSGDKKLLEDVNELLAKYVAAMEKVKLREA 454 (567)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 67666776758999987359999888889999999998760871663030687588999999999999999887789999
Q ss_pred HHHHHHHHHHHHHHHHHHCC------CCCCC-CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEE
Q ss_conf 99999999999999986211------00022-1799999999999999722343899999998289983551
Q gi|254780802|r 730 VANIHELVNVISKPLMEIAK------KKSNA-DRISTIRYILEKLIIMMSPMIPHLAEECWQLLGNAGLVAQ 794 (869)
Q Consensus 730 i~~i~~f~n~ls~~y~~~~k------~~~~~-~~~~~l~~vl~~l~~lLaPi~PhiaEEiw~~Lg~~~~i~~ 794 (869)
++.+|+....-+.+..+... ++..+ ....+-..++-.+..||+|+||-++.+|..+|+-+..+..
T Consensus 455 l~~~m~is~~GNqylQ~~~~~k~~~~~r~r~~~vi~~a~nii~lvs~ll~P~mP~~s~~I~kqlnlp~~~~~ 526 (567)
T KOG1247 455 LKTAMEISRRGNQYLQENTDNKLYEESRQRAGTVIGLAANIIYLVSVLLYPYMPTTSAEILKQLNLPETLFP 526 (567)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCEEEEHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCC
T ss_conf 999999997520887414200010322000552643366899999998636566206999998498500179
No 35
>pfam01406 tRNA-synt_1e tRNA synthetases class I (C) catalytic domain. This family includes only cysteinyl tRNA synthetases.
Probab=100.00 E-value=3.5e-33 Score=245.38 Aligned_cols=125 Identities=16% Similarity=0.169 Sum_probs=109.5
Q ss_pred CCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHH
Q ss_conf 03676788883899807789789874004779778999999777189855676881402058999999809999999999
Q gi|254780802|r 25 FKAENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQ 104 (869)
Q Consensus 25 fe~~~~~~~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~ 104 (869)
|++ .++++-+||++-|-.| +.+|||||+|++..|+++||+|++|++|.|..|.|-||-+|+.+|++.++.|++++.+
T Consensus 2 f~p-~~~~~v~~YicgPt~Y--~~pHIGHa~t~I~~Dvi~R~~r~~G~~V~fv~g~ddhgdKI~~~A~~~g~~p~e~~d~ 78 (301)
T pfam01406 2 FVP-LHQGKVNMYVCGPTVY--DDSHIGHARSAVAFDVLRRYLQALGYDVQFVQNFTDIDDKIIKRAQQQGESFRELAAR 78 (301)
T ss_pred CCC-CCCCEEEEEECCCCCC--CCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCHHHHHHH
T ss_conf 558-8799378997899068--9975223368999999999999749946999677863179999999809865379999
Q ss_pred HHHHHHHHHHHCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCE
Q ss_conf 999999999981917664698214773599999999999998896341221
Q gi|254780802|r 105 NIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTA 155 (869)
Q Consensus 105 ~i~~~k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~ 155 (869)
+.+.+++.+++|+++-+-.. -+|++ +.+.++..+.+|.++|.+|.+..
T Consensus 79 ~~~~F~~~~~~L~I~~~d~~-~rtTe--hi~~v~~~i~~L~~kG~~Y~~~~ 126 (301)
T pfam01406 79 FITAYTKDMDALNVLPPDLE-PRVTE--HIDEIIEFIERLIKKGYAYVSDN 126 (301)
T ss_pred HHHHHHHHHHHHCCCCCCCC-CCCCC--CHHHHHHHHHHHHHCCCEEECCC
T ss_conf 99999988998498289868-77543--57999999999997797687269
No 36
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=99.96 E-value=2.2e-26 Score=198.87 Aligned_cols=125 Identities=22% Similarity=0.233 Sum_probs=99.1
Q ss_pred CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 88838998077897898740047797789999997771898556768814020589999998099999999999999999
Q gi|254780802|r 32 NKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRK 111 (869)
Q Consensus 32 ~~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~ 111 (869)
++-+.|+- =|.+=+.+||||+|+|+..|++.||.|..||+|.|.+..----=.|...|.+.++.+.+++.++.+.+.+
T Consensus 22 ~~v~~Y~C--GPTVYd~~HiG~~r~~v~~D~l~R~l~~~g~~v~~v~NiTDidDKii~~a~~~~~~~~~~~~~~~~~f~~ 99 (460)
T PRK00260 22 GKVKMYVC--GPTVYDYAHIGHARSFVVFDVLRRYLRYRGYKVTYVRNITDIDDKIIKRANEEGESIKELTERYIAAFHE 99 (460)
T ss_pred CEEEEEEC--CCCCCCCCCHHCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 95889967--9848887320003089999999999996499349998237541999999998196999999999999999
Q ss_pred HHHHCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCC
Q ss_conf 99981917664698214773599999999999998896341221332147
Q gi|254780802|r 112 QLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDP 161 (869)
Q Consensus 112 ~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~pV~wcp 161 (869)
++++||+.--=.-+-.| +|...+.-...+|.++|+.|....-|+++.
T Consensus 100 d~~~L~i~~p~~~~r~t---~~i~~~i~~i~~l~~~g~aY~~~~~vyFdv 146 (460)
T PRK00260 100 DMDALGVLRPDIEPRAT---EHIPEIIELIERLIEKGHAYEADGDVYFDV 146 (460)
T ss_pred HHHHHCCCCCCCCCCCC---CCHHHHHHHHHHHHHCCCEEEECCEEEECC
T ss_conf 99994899985224301---479999999999985795288478799635
No 37
>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.94 E-value=2.8e-26 Score=198.15 Aligned_cols=136 Identities=21% Similarity=0.358 Sum_probs=114.0
Q ss_pred CCCCCHHHH-HHHHHHHHHHHHHHHC-----CCC--------CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 343210114-5567788999997630-----246--------67897569999999999999999988168899999999
Q gi|254780802|r 669 WSNKGVDST-YQFIQQIWRLIYNAKD-----ELQ--------TSSTKKDISLISKSTKFLERIEENYQNLSFNKAVANIH 734 (869)
Q Consensus 669 ~s~~~i~~~-~rfl~kl~~l~~~~~~-----~~~--------~~~~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai~~i~ 734 (869)
|+++++.++ ++|++++||...+... .+. ......|+||++++++++++++++|++|+|+.|++.++
T Consensus 1 F~e~~v~e~~R~f~nklwNa~RF~~~~~~~~~~~~~~~~~~~~~~~~~D~WIls~l~~~~~~v~~~~~~y~f~~a~~~l~ 80 (183)
T cd07961 1 FSEKGVREVVRKVLLPLWNAYRFFVTYANLDGFDPGKDDDAVASLNVLDRWILSRLNSLIKEVTEEMEAYDLYTAVRALL 80 (183)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 98889999983589999989999996221017995434556010558899999999999999999998011999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCC--------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC-----CCCEEECCCCCCC
Q ss_conf 999999999986211000221--------799999999999999722343899999998289-----9835517886659
Q gi|254780802|r 735 ELVNVISKPLMEIAKKKSNAD--------RISTIRYILEKLIIMMSPMIPHLAEECWQLLGN-----AGLVAQQKWPKLD 801 (869)
Q Consensus 735 ~f~n~ls~~y~~~~k~~~~~~--------~~~~l~~vl~~l~~lLaPi~PhiaEEiw~~Lg~-----~~~i~~~~WP~~d 801 (869)
+|+++||+||+++.|++.+++ ...||+++|+.+++||||||||+|||||+.|.+ .+|||+++||+++
T Consensus 81 ~F~~~l~~wYie~~K~rl~~~~~~~~~~~a~~~L~~vL~~~l~ll~P~~PFitEeiwq~l~~~~~~~~eSVhl~~~P~~~ 160 (183)
T cd07961 81 EFIDELTNWYIRRNRKRFWGEEGDDDKLAAYATLYEVLLTLSRLMAPFTPFITEEIYQNLRRELGDAPESVHLLDWPEVD 160 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCEECCCCCCCC
T ss_conf 99999989999998899970566388899999999999999997576402439999998602468988803200689988
Q ss_pred HHH
Q ss_conf 678
Q gi|254780802|r 802 PIL 804 (869)
Q Consensus 802 ~~~ 804 (869)
+..
T Consensus 161 ~~~ 163 (183)
T cd07961 161 ESL 163 (183)
T ss_pred CCC
T ss_conf 102
No 38
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=3.4e-22 Score=170.09 Aligned_cols=122 Identities=20% Similarity=0.208 Sum_probs=97.0
Q ss_pred EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 89980778978987400477977899999977718985567688140205899999980999999999999999999998
Q gi|254780802|r 36 YFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQLQS 115 (869)
Q Consensus 36 f~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~~~~ 115 (869)
.-+..==|++=...||||||+++.-|++.||.+..||.|.|.+-+--=-=.|...|.+.+..++++++++++.+.++|+.
T Consensus 23 V~mYvCGpTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDIDDKIi~rA~~~g~~~~ev~~~~i~~f~~D~~a 102 (464)
T COG0215 23 VKMYVCGPTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDIDDKIINRAREEGLSIREVAERYIAAFFEDMDA 102 (464)
T ss_pred EEEEECCCCCCCCCCCCCCCCEEHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 68996188257764456676520299999999982970799964666638999999982999999999999999999998
Q ss_pred CCCE-EECCCCEECCCHHHHHHHHHHHHHHHHCCCEEEC-CEEEECCC
Q ss_conf 1917-6646982147735999999999999988963412-21332147
Q gi|254780802|r 116 IGLS-IDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRK-TAQVNWDP 161 (869)
Q Consensus 116 lG~~-~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg-~~pV~wcp 161 (869)
||+. .|- .|-.| +|..-+.....+|-+||+.|.. .--|+++.
T Consensus 103 L~v~~p~~-~PraT---e~I~~iI~~I~~Li~kG~AY~~~~G~VYFdv 146 (464)
T COG0215 103 LNVLPPDI-EPRAT---EHIDEIIEFIEKLIEKGYAYVADDGDVYFDV 146 (464)
T ss_pred HCCCCCCC-CCCHH---HCHHHHHHHHHHHHHCCCEEEECCCCEEEEC
T ss_conf 29999865-57476---4799999999999977965884698289952
No 39
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.90 E-value=3.4e-23 Score=176.95 Aligned_cols=132 Identities=19% Similarity=0.395 Sum_probs=106.5
Q ss_pred CCHHHHHHHHHHHHH---HHHHHHCCCCCC--------CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-HH
Q ss_conf 210114556778899---999763024667--------897569999999999999999988168899999999999-99
Q gi|254780802|r 672 KGVDSTYQFIQQIWR---LIYNAKDELQTS--------STKKDISLISKSTKFLERIEENYQNLSFNKAVANIHELV-NV 739 (869)
Q Consensus 672 ~~i~~~~rfl~kl~~---l~~~~~~~~~~~--------~~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai~~i~~f~-n~ 739 (869)
+.+..+...++|+|| ++.++.+.+.+. ....|+||++++++++++++++|++|+|+.|++.+++|+ ++
T Consensus 4 ~iL~~~~e~~rKiwNt~RF~l~nl~~~~~~~~~~~~~~l~~lD~wiLs~l~~~~~~v~~~~~~y~f~~~~~~l~~F~~~~ 83 (180)
T cd07960 4 EILKQVAEAYRKIRNTFRFLLGNLNDFDPAKDAVPYEELLELDRYALHRLNELIKEVREAYENYEFHKVYQALNNFCTVD 83 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
T ss_conf 99999999999999999999986379994334589222879899999999999999999998389999999999994021
Q ss_pred HHHHHHHHCCCCCCCC---------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC---CCCEEECCCCCCCHH
Q ss_conf 9999986211000221---------799999999999999722343899999998289---983551788665967
Q gi|254780802|r 740 ISKPLMEIAKKKSNAD---------RISTIRYILEKLIIMMSPMIPHLAEECWQLLGN---AGLVAQQKWPKLDPI 803 (869)
Q Consensus 740 ls~~y~~~~k~~~~~~---------~~~~l~~vl~~l~~lLaPi~PhiaEEiw~~Lg~---~~~i~~~~WP~~d~~ 803 (869)
||+||++..|++.+++ .+.||+++++.++++||||+||+|||+|+.|++ .+||++++||++++.
T Consensus 84 ls~~Yle~~K~rly~~~~~~~~r~~~~~~L~~vl~~~l~llaPi~Pf~tEeiw~~l~~~~~~~Si~l~~~P~~~~~ 159 (180)
T cd07960 84 LSAFYLDIIKDRLYCDAKDSLERRSAQTVLYHILDALLKLLAPILPFTAEEVWEHLPGEKKEESVFLEDWPELPEE 159 (180)
T ss_pred CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCEEECCCCCCCCC
T ss_conf 0359999977976158888389999999999999998987440004539999987566899997571489999801
No 40
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.90 E-value=1.1e-22 Score=173.34 Aligned_cols=112 Identities=34% Similarity=0.694 Sum_probs=97.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCC-----CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 3432101145567788999997630246-----67897569999999999999999988168899999999999999999
Q gi|254780802|r 669 WSNKGVDSTYQFIQQIWRLIYNAKDELQ-----TSSTKKDISLISKSTKFLERIEENYQNLSFNKAVANIHELVNVISKP 743 (869)
Q Consensus 669 ~s~~~i~~~~rfl~kl~~l~~~~~~~~~-----~~~~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai~~i~~f~n~ls~~ 743 (869)
||+++|+|++||++|+||++....+... .+.+..|+|+++++|+++++|++++|+|+||+|++.+|+|+|.+++.
T Consensus 1 Wse~gIeg~~rFl~KlW~l~~~~~~~~~~~~~~~~~~~~d~~i~~~l~~~i~~vt~~~e~~~fN~aia~l~ef~N~l~~~ 80 (117)
T cd07958 1 WSDSGVEGAYRFLNRVWRLVTELAEALAAPAAAAELSEEDKELRRKLHKTIKKVTEDIERLRFNTAIAALMELVNALYKY 80 (117)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 98006999999999999999988863134556544667449999999999999999998522059999999999999884
Q ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC
Q ss_conf 9862110002217999999999999997223438999999982
Q gi|254780802|r 744 LMEIAKKKSNADRISTIRYILEKLIIMMSPMIPHLAEECWQLL 786 (869)
Q Consensus 744 y~~~~k~~~~~~~~~~l~~vl~~l~~lLaPi~PhiaEEiw~~L 786 (869)
.. .......+++++++.+++|||||+||+|||||+.|
T Consensus 81 ~~------~~~~~~~~~~~~l~~ll~lL~P~~PHiaEElW~~L 117 (117)
T cd07958 81 KK------KDAQHAAVLREALETLVLLLAPFAPHIAEELWEEL 117 (117)
T ss_pred HC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 61------44114999999999999998842479999998539
No 41
>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases. This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA.
Probab=99.89 E-value=2e-22 Score=171.71 Aligned_cols=118 Identities=24% Similarity=0.441 Sum_probs=101.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHC---CCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-H
Q ss_conf 3432101145567788999997630---246------67897569999999999999999988168899999999999-9
Q gi|254780802|r 669 WSNKGVDSTYQFIQQIWRLIYNAKD---ELQ------TSSTKKDISLISKSTKFLERIEENYQNLSFNKAVANIHELV-N 738 (869)
Q Consensus 669 ~s~~~i~~~~rfl~kl~~l~~~~~~---~~~------~~~~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai~~i~~f~-n 738 (869)
||++++++++||++|+||....... ... ......|+||++++++++++|+++|++|+|++|++.+++|+ +
T Consensus 1 ~~e~~i~~~~rf~nKlwN~~rf~~~~~~~~~~~~~~~~~~~~~Dkwil~~l~~~~~~i~~~~~~~~f~~a~~~l~~F~~~ 80 (135)
T cd07962 1 FDEKRVEGGRNFCNKLWNAARFVLMNLEDDDEPEEDPESLSLADRWILSRLNKTVEEVTEALENYRFSEAATALYEFFWN 80 (135)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 98999899999999999999999875453687546610077999999999999999999999865899999999999899
Q ss_pred HHHHHHHHHCCCCCCCC-------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC
Q ss_conf 99999986211000221-------7999999999999997223438999999982
Q gi|254780802|r 739 VISKPLMEIAKKKSNAD-------RISTIRYILEKLIIMMSPMIPHLAEECWQLL 786 (869)
Q Consensus 739 ~ls~~y~~~~k~~~~~~-------~~~~l~~vl~~l~~lLaPi~PhiaEEiw~~L 786 (869)
+||++|+++.|++.+.. ...+|+++++.++++||||+||+|||||+.|
T Consensus 81 ~ls~~Yie~~K~rl~~~~~~~~~~~~~~l~~~l~~~l~llaP~~PfitEeiw~~l 135 (135)
T cd07962 81 DFCDWYLELVKPRLYGEDEEEKKAARATLYYVLETILRLLHPFMPFITEELWQRL 135 (135)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9989999997998729978999999999999999999999878799999998439
No 42
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=99.88 E-value=1.3e-20 Score=159.19 Aligned_cols=116 Identities=15% Similarity=0.093 Sum_probs=91.9
Q ss_pred EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 89980778978987400477977899999977718985567688140205899999980999999999999999999998
Q gi|254780802|r 36 YFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQLQS 115 (869)
Q Consensus 36 f~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~~~~ 115 (869)
--++.==|++-+..||||+|+|+.-|++.||.+..||+|.|.+..--=-=.|...|.+.++++.+.++++++.+.++|+.
T Consensus 10 V~mY~CGPTVYd~~HiGhaRt~v~fD~l~R~L~~~gy~V~~v~NiTDVDDKii~~A~~~g~~~~ela~~~~~~f~~d~~~ 89 (384)
T PRK12418 10 ATMYVCGITPYDATHLGHAATYLAFDLVQRVWLDAGHDVHYVQNVTDVDDPLLERAARDGVDWRDLAAREIALFREDMAA 89 (384)
T ss_pred EEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 89996688688885423351689999999999980996499981050638999999985939999999999999999998
Q ss_pred CCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECC
Q ss_conf 191766469821477359999999999999889634122
Q gi|254780802|r 116 IGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKT 154 (869)
Q Consensus 116 lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~ 154 (869)
||+.--=.. +---++..-+.-...+|.++|+.|+-.
T Consensus 90 Lnv~~p~~~---praTe~I~~ii~~I~~Li~~G~AY~~~ 125 (384)
T PRK12418 90 LRVLPPRDY---VGAVESIPEVVELVEKLLASGAAYVVD 125 (384)
T ss_pred CCCCCCCEE---CCCCCCHHHHHHHHHHHHHCCCEEECC
T ss_conf 299999500---321137999999999999679557756
No 43
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=99.88 E-value=1.2e-20 Score=159.50 Aligned_cols=115 Identities=15% Similarity=0.111 Sum_probs=89.5
Q ss_pred EEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 98077897898740047797789999997771898556768814020589999998099999999999999999999819
Q gi|254780802|r 38 VLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQLQSIG 117 (869)
Q Consensus 38 i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~~~~lG 117 (869)
+..==|.+-+..||||+|+|+.-|++.||.+.+||+|.|.+..--=-=.|...|.+.++...+.+.++++.+.++|++||
T Consensus 39 mYvCGpTVYd~~HiGhaR~~v~fD~l~R~L~~~G~~V~~v~NiTDiDDKii~~A~~~g~~~~ela~~y~~~f~~d~~~Ln 118 (411)
T TIGR03447 39 MYVCGITPYDATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAERDGVDWRELGTSQIDLFREDMEALR 118 (411)
T ss_pred EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 99658847888862234168999999999998398558996146542599999988298999999999999999999749
Q ss_pred CEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCE
Q ss_conf 17664698214773599999999999998896341221
Q gi|254780802|r 118 LSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTA 155 (869)
Q Consensus 118 ~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~ 155 (869)
+---=..+-.| ++...+.-...+|-++|+.|...-
T Consensus 119 i~~p~~~praT---e~I~~ii~~I~~Li~kG~AY~~~~ 153 (411)
T TIGR03447 119 VLPPRDYIGAV---ESIDEVIEMVEKLLAAGAAYEVEG 153 (411)
T ss_pred CCCCCCCCCCC---CCHHHHHHHHHHHHHCCCEEEECC
T ss_conf 99998776743---479999999999986896798279
No 44
>pfam08264 Anticodon_1 Anticodon-binding domain. This domain is found valyl and leucyl tRNA synthetases. It binds to the anticodon of the tRNA.
Probab=99.87 E-value=1.9e-21 Score=164.95 Aligned_cols=100 Identities=30% Similarity=0.604 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-HHHHHHHHHHCCCCCCCC-------HHHHHHHHHHHHHHHHCCC
Q ss_conf 69999999999999999988168899999999999-999999986211000221-------7999999999999997223
Q gi|254780802|r 703 DISLISKSTKFLERIEENYQNLSFNKAVANIHELV-NVISKPLMEIAKKKSNAD-------RISTIRYILEKLIIMMSPM 774 (869)
Q Consensus 703 D~~ils~~~~~i~~v~~~~e~~~f~~ai~~i~~f~-n~ls~~y~~~~k~~~~~~-------~~~~l~~vl~~l~~lLaPi 774 (869)
|+|+++++++++++++++|++|+|++|++.+++|+ |+||+||++..|++.+++ +..+|+++++.++++||||
T Consensus 1 Dkwil~~l~~~i~~v~~~~e~~~f~~a~~~l~~f~~~~l~~~Yle~~K~~l~~~~~~~~~~~~~~l~~~l~~~l~ll~P~ 80 (148)
T pfam08264 1 DRWILSRLNKLIKEVTEAYEKYRFNTAASALYEFFWNDLSDWYLELSKDRLYGEDPDESKRRATTLYEVLETLLRLLAPF 80 (148)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98999999999999999998079999999999999999989999974052147880677779999999999999998331
Q ss_pred HHHHHHHHHHHCCCCCCEEECCCCCCCH
Q ss_conf 4389999999828998355178866596
Q gi|254780802|r 775 IPHLAEECWQLLGNAGLVAQQKWPKLDP 802 (869)
Q Consensus 775 ~PhiaEEiw~~Lg~~~~i~~~~WP~~d~ 802 (869)
|||+|||+|+.++..+||+.++||++++
T Consensus 81 ~PfitEeiw~~~~~~~si~~~~wP~~~~ 108 (148)
T pfam08264 81 MPFITEELWQKLGLKGSIHLAPWPEADE 108 (148)
T ss_pred HHHHHHHHHHHCCCCCEEECCCCCCCCC
T ss_conf 0888999998679998163049999990
No 45
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.81 E-value=9e-19 Score=146.65 Aligned_cols=114 Identities=23% Similarity=0.335 Sum_probs=97.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHHHHHH
Q ss_conf 34321011455677889999976302466--789756999999999999999998816889999999-999999999998
Q gi|254780802|r 669 WSNKGVDSTYQFIQQIWRLIYNAKDELQT--SSTKKDISLISKSTKFLERIEENYQNLSFNKAVANI-HELVNVISKPLM 745 (869)
Q Consensus 669 ~s~~~i~~~~rfl~kl~~l~~~~~~~~~~--~~~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai~~i-~~f~n~ls~~y~ 745 (869)
|+++.+.++...|.++++++....+...+ +.+..|+|+++++++++++++++||+|+|++|++.+ +++.+++ ++|.
T Consensus 1 f~~~~a~~~~~~L~~~~~~~~e~~~~~~~~~~~~~~Dkw~ls~l~~~i~~~~~a~e~~~fr~a~~~~~~~l~~~~-~~Y~ 79 (117)
T cd07959 1 FREEEANSAILRLERFYELAEELIETEGELEELTFIDRWLLSRLNRLIKETTEAYENMQFREALKEGLYELQNDL-DWYR 79 (117)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_conf 918789999999999999999998625778889776899999999999999999998788789999999999999-9999
Q ss_pred HHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC
Q ss_conf 62110002217999999999999997223438999999982
Q gi|254780802|r 746 EIAKKKSNADRISTIRYILEKLIIMMSPMIPHLAEECWQLL 786 (869)
Q Consensus 746 ~~~k~~~~~~~~~~l~~vl~~l~~lLaPi~PhiaEEiw~~L 786 (869)
+..+.+ .+..+|+++++.+++|||||+||+|||||+.|
T Consensus 80 ~~~~~~---~~~~~l~~~l~~~~~lLaP~~PhiaEEiW~~l 117 (117)
T cd07959 80 ERGGAG---MNKDLLRRFIEVWTRLLAPFAPHLAEEIWHEL 117 (117)
T ss_pred HHHCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 984554---14999999999999998473348699998639
No 46
>KOG2007 consensus
Probab=99.79 E-value=8e-17 Score=133.26 Aligned_cols=129 Identities=21% Similarity=0.218 Sum_probs=99.1
Q ss_pred CCCEEEECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC--
Q ss_conf 897064047421000000122221001234633566655301332111113432101145567788999997630246--
Q gi|254780802|r 619 DNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDIIWSNKGVDSTYQFIQQIWRLIYNAKDELQ-- 696 (869)
Q Consensus 619 ~~~~~~~~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~~~~~~~~~~d~~~s~~~i~~~~rfl~kl~~l~~~~~~~~~-- 696 (869)
-|++.+.-+|+|||||++|+|+..+++++|.++.||++++. +..-+.+++|++.+..+..+.+.+-|+++.+.....
T Consensus 294 lHtGhL~i~g~KMSKSLkNFiTIke~Lk~~sp~qLRl~fl~-~~wr~~ldYs~s~m~~a~q~e~~~~~ff~~~~al~~~~ 372 (586)
T KOG2007 294 LHTGHLTINGEKMSKSLKNFITIKEALKKYSPRQLRLAFLL-HQWRSPLDYSDSTMEQALQLEKSLNNFFLDVKALLRGA 372 (586)
T ss_pred EECCEEEECCCHHHHHHCCCEEHHHHHHHCCHHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 87573665111043332041439999976398999999998-77567678438899999999999999999999998254
Q ss_pred ---CCCCHHHHHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf ---6789756999999999999999998-816889999999999999999998621
Q gi|254780802|r 697 ---TSSTKKDISLISKSTKFLERIEENY-QNLSFNKAVANIHELVNVISKPLMEIA 748 (869)
Q Consensus 697 ---~~~~~~D~~ils~~~~~i~~v~~~~-e~~~f~~ai~~i~~f~n~ls~~y~~~~ 748 (869)
......+..++..+..+...|..++ ++|+...++..+-++++..+.+..+..
T Consensus 373 ~~~~~~~~~e~~l~~~~~~t~~~vh~al~d~~dT~~v~~~~~~lvs~~N~~i~~~~ 428 (586)
T KOG2007 373 KPFEKLSEKEAELLEDFGKTQTAVHAALCDNFDTPRVMEAIRELVSQGNAYIRESG 428 (586)
T ss_pred CHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 20210385899999860037899999987424518899999998734338888731
No 47
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains. This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway.
Probab=99.65 E-value=2.5e-15 Score=122.99 Aligned_cols=104 Identities=17% Similarity=0.326 Sum_probs=88.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCC---CC-----CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 3210114556778899999763024---66-----789756999999999999999998816889999999999999999
Q gi|254780802|r 671 NKGVDSTYQFIQQIWRLIYNAKDEL---QT-----SSTKKDISLISKSTKFLERIEENYQNLSFNKAVANIHELVNVISK 742 (869)
Q Consensus 671 ~~~i~~~~rfl~kl~~l~~~~~~~~---~~-----~~~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai~~i~~f~n~ls~ 742 (869)
++.++++++|++|+||...+..... .+ .....|+||+++++.++++++++|++|+|++|++.|++|+... +
T Consensus 1 eerve~~r~F~nKLWNa~rF~~~~~~~~~~~~~~~~l~~~DrWIls~l~~~i~~v~~~~e~y~f~~a~~~l~~F~w~~-d 79 (117)
T cd07375 1 EERLKQARAFLNRLYRLLSFFRKALGGTQPKWDNELLEEADRELLARLQEFIKRTTNALEALDPTTAVQELFKFTNEL-N 79 (117)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-H
T ss_conf 999999999998999999999856887888656322776279999999899999999999278999999999999936-9
Q ss_pred HHHHHCCCCCCC-----CHHHHHHHHHHHHHHHHCCCH
Q ss_conf 998621100022-----179999999999999972234
Q gi|254780802|r 743 PLMEIAKKKSNA-----DRISTIRYILEKLIIMMSPMI 775 (869)
Q Consensus 743 ~y~~~~k~~~~~-----~~~~~l~~vl~~l~~lLaPi~ 775 (869)
||++.+|++... ..+++|++++..+++|||||+
T Consensus 80 wYie~~K~r~~~e~~~~~~~~~L~~vl~~~lkLlhPFt 117 (117)
T cd07375 80 WYLDELKPALQTEELREAVLAVLRAALVVLTKLLAPFT 117 (117)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999656304827579999999999999999819999
No 48
>TIGR00435 cysS cysteinyl-tRNA synthetase; InterPro: IPR002308 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=99.51 E-value=1e-13 Score=111.94 Aligned_cols=127 Identities=20% Similarity=0.259 Sum_probs=96.5
Q ss_pred CEECCCCEEEECCCCCCHHHCCCCCCCCCCCC-CCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHH---HHHHHHHHHHHH
Q ss_conf 11048970640474210000001222210012-34633566655301332111113432101145---567788999997
Q gi|254780802|r 615 FRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIK-SYGADTARLFVLSDSPPDRDIIWSNKGVDSTY---QFIQQIWRLIYN 690 (869)
Q Consensus 615 ~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~-~yGaD~lRl~~~~~~~~~~d~~~s~~~i~~~~---rfl~kl~~l~~~ 690 (869)
-..-.|++.+..++||||||+||++...|+++ .|.+-+|||++++ +-+-.-++||++.++.+. +-+++|.+.+..
T Consensus 398 ~~yW~H~G~~~id~eKMSKSLgNF~~v~D~L~q~~d~~~lR~~~l~-~HYr~pLdf~e~~l~~aksfe~~~~~l~~~l~~ 476 (660)
T TIGR00435 398 AKYWLHNGFLMIDNEKMSKSLGNFITVRDVLKQNYDPEVLRYLLLS-VHYRSPLDFSEELLEAAKSFENALERLYKALRN 476 (660)
T ss_pred EEEEEECCEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH-HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999851778976721651555688888687427689999999876-553145674788999998899999999999998
Q ss_pred HHCCCCCCC------CH---HHHHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHH
Q ss_conf 630246678------97---56999999999999999998-816889999999999999999
Q gi|254780802|r 691 AKDELQTSS------TK---KDISLISKSTKFLERIEENY-QNLSFNKAVANIHELVNVISK 742 (869)
Q Consensus 691 ~~~~~~~~~------~~---~D~~ils~~~~~i~~v~~~~-e~~~f~~ai~~i~~f~n~ls~ 742 (869)
....+.+.. .+ ........+...-.+|..+| ++|.+..|++.|.+++...++
T Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Eseskvhsa~~dDlN~a~Al~vL~el~~~~N~ 538 (660)
T TIGR00435 477 LDTDLAYSKEFGENKDPKNVDEKEFEAAFEESESKVHSAMDDDLNTANALAVLFELAKSINK 538 (660)
T ss_pred HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
T ss_conf 75310342223424356642256578664320357788875057806899999999998400
No 49
>cd00802 class_I_aaRS_core Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.39 E-value=3.1e-13 Score=108.67 Aligned_cols=73 Identities=34% Similarity=0.621 Sum_probs=69.8
Q ss_pred EEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 998077897898740047797789999997771898556768814020589999998099999999999999999999
Q gi|254780802|r 37 FVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQLQ 114 (869)
Q Consensus 37 ~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~~~ 114 (869)
+++.++|||||.||+||+++.++.|+++||+ +|.|+.|+|+||+|++..+.+.+..|+++++++++.++++++
T Consensus 1 ~i~~~~p~ptG~lHiGh~~~~~~~~~~ar~~-----~~~~~~~idd~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 73 (142)
T cd00802 1 VITRPGPYPTGPLHIGHARTALLNDVLARYG-----NVLFILGIDDTGLPIEDKAEKEGKLPKEEVEENIEEIKEDLK 73 (142)
T ss_pred CEECCCCCCCCCCCHHHHHHHHHHHHHHHHC-----CCEEEEEECCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHCE
T ss_conf 9141488989964188999999999999981-----998999865799200116788444889999999999998652
No 50
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases. This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA.
Probab=99.36 E-value=2.5e-11 Score=95.64 Aligned_cols=117 Identities=22% Similarity=0.311 Sum_probs=91.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 43210114556778899999763024667---897569999999999999999988168899999999999999999986
Q gi|254780802|r 670 SNKGVDSTYQFIQQIWRLIYNAKDELQTS---STKKDISLISKSTKFLERIEENYQNLSFNKAVANIHELVNVISKPLME 746 (869)
Q Consensus 670 s~~~i~~~~rfl~kl~~l~~~~~~~~~~~---~~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai~~i~~f~n~ls~~y~~ 746 (869)
+.+.+....++++|+.+++....+...+. ..+.|.+++++++.+++++.++|++++|++|++.++++++..++|..+
T Consensus 2 N~~L~~~~GNLv~Rv~~~~~k~~~~~i~~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~al~~i~~l~~~~N~y~~~ 81 (129)
T cd07957 2 NSELANNLGNLVNRTLNMASKYFGGVVPEFGGLTEEDEELLEEAEELLEEVAEAMEELEFRKALEEIMELARAANKYIDE 81 (129)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88888799779999999999827997999877764139999999999999999998524999999999999999999996
Q ss_pred HCCCCC-----CCCHHHHHH---HHHHHHHHHHCCCHHHHHHHHHHHC
Q ss_conf 211000-----221799999---9999999997223438999999982
Q gi|254780802|r 747 IAKKKS-----NADRISTIR---YILEKLIIMMSPMIPHLAEECWQLL 786 (869)
Q Consensus 747 ~~k~~~-----~~~~~~~l~---~vl~~l~~lLaPi~PhiaEEiw~~L 786 (869)
....+. ......+++ ++++.+.++|+||||++|+++|++|
T Consensus 82 ~~PW~l~K~~~~~~~~~vl~~~l~~~~~l~ilL~P~mP~~s~~i~~~L 129 (129)
T cd07957 82 TAPWKLAKEEDPERLATVLYVLLELLRILAILLSPFMPETAEKILDQL 129 (129)
T ss_pred CCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHC
T ss_conf 587988823029999999999999999999999757018999999719
No 51
>TIGR00395 leuS_arch leucyl-tRNA synthetase; InterPro: IPR004493 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Leucyl tRNA synthetase (6.1.1.4 from EC) is an alpha monomer that belongs to class Ia. There are two different families of leucyl-tRNA synthetases. This family includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases.; GO: 0000166 nucleotide binding, 0004823 leucine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006429 leucyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=99.18 E-value=4.4e-12 Score=100.77 Aligned_cols=179 Identities=19% Similarity=0.305 Sum_probs=115.7
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCHHH--HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCC
Q ss_conf 56466548889999740467752022--2111000111221123222223422333468463474200011100100022
Q gi|254780802|r 397 MTNTEALQAVMSHLEKQNIKNSPIGK--RKINFRLRDWCISRQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTL 474 (869)
Q Consensus 397 ~~~~~~~~~i~~~l~~~~~~~~~~~~--~~~~~~l~DW~ISRqr~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~ 474 (869)
.+.+.=++.+.++|+++.+-...... +....+|+||..||.+--||.|| | |..|++
T Consensus 555 Ys~~~WK~~a~~CLegM~~ip~~~k~~F~~~idWL~dwAc~Rr~GLGTrlP-w---------------------de~wli 612 (1109)
T TIGR00395 555 YSDESWKELAHECLEGMRIIPEEVKEAFEEKIDWLKDWACARRKGLGTRLP-W---------------------DEKWLI 612 (1109)
T ss_pred CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCC-C---------------------CCCEEE
T ss_conf 451568999998743373276888888877666423630461246777787-5---------------------675477
Q ss_pred CCCCCCHHHHHHHHHHCC-------CCCC---CCCCCCCC-CCCCCCCCCCCCCCCC-----CCCCCCH-----HHHHHH
Q ss_conf 454210024564211013-------6764---43564323-4566643332233555-----6544101-----356641
Q gi|254780802|r 475 PGNPLENHPTWKKIFCVK-------CGSE---ALRETDTM-DTFVDSSWYYMRYMTP-----HAKDPIN-----KELVRQ 533 (869)
Q Consensus 475 ~~~~l~~~~~~~~~~~~~-------~~~~---~~r~~dvl-d~w~dS~~~~~~~~~~-----~~~~~~~-----~e~~~~ 533 (869)
++|++++.|+..|+.- .|.+ +--..|-| |.+||- -+++-... .+..|.+ ++.|+|
T Consensus 613 --ESLsDSTIY~aYYtiA~~l~~~~~g~EiGPlGisaD~mt~E~fDy--ifl~~gdV~K~Ak~t~ip~~~~~~lR~eF~Y 688 (1109)
T TIGR00395 613 --ESLSDSTIYMAYYTIAKYLNKDDLGNEIGPLGISADQMTDEFFDY--IFLGKGDVDKVAKNTNIPLELIEKLREEFEY 688 (1109)
T ss_pred --ECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCHHHHHH--HHCCCCCHHHHHHHHCCCHHHHHHHHHHCCE
T ss_conf --127623256789999999852145776455544420057445224--3238871567765407888899875543410
Q ss_pred CCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHCCC
Q ss_conf 14334401455544332023455532013478732232002222355323224332358700130620221025
Q gi|254780802|r 534 WFPVDQYIGGIEHAVLHLLYARFFAHILKKIGYIEIDEPFKRLFTQGMVVHETYYQLEGIKKKYLKPDEVILRN 607 (869)
Q Consensus 534 ~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~g~~~~~~pf~~l~~~G~v~~~~~~~~~~~~~~~~~p~~~~~~~ 607 (869)
|||+|++++|+|.+-+||.++=|.|..++.-. ..| +.+...|++.- .+.+||+|.|+.+...+++..+
T Consensus 689 ~YPlD~r~SgKDLi~NHLtFyiF~HvAiFP~~----~WP-rGi~vnG~~~L-eg~KmSkSkGn~l~l~~~vekf 756 (1109)
T TIGR00395 689 WYPLDWRISGKDLIPNHLTFYIFHHVAIFPEK----FWP-RGIVVNGYVLL-EGKKMSKSKGNVLTLKEAVEKF 756 (1109)
T ss_pred ECCCCCCCCCCCCCHHHHHHHHHHEEEECCCC----CCC-CEEEEEEEEEE-ECCCCCCCCCCCHHHHHHHHHH
T ss_conf 05601002431010346776644002424879----897-61799757887-1734054547622388999872
No 52
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=1.7e-08 Score=76.22 Aligned_cols=122 Identities=20% Similarity=0.258 Sum_probs=88.0
Q ss_pred CCCCCCHHHCCCCCCCCCCCCCCC----------------------HHHHHHHHHHCCCCCCCCCCCCCCHHHHHH----
Q ss_conf 474210000001222210012346----------------------335666553013321111134321011455----
Q gi|254780802|r 626 GPLEKMSKSKKNVIDPMKVIKSYG----------------------ADTARLFVLSDSPPDRDIIWSNKGVDSTYQ---- 679 (869)
Q Consensus 626 ~~g~KMSKSkGNvi~p~~~i~~yG----------------------aD~lRl~~~~~~~~~~d~~~s~~~i~~~~r---- 679 (869)
.+|.||||..||+|+++++++.-| .|++||++++ ..+..++.|+++.+...-+
T Consensus 379 ~~g~kmStR~G~~vtl~dllde~~era~~~~~~~~~~~~~iA~~vgi~Avry~~l~-~~~~~~~~Fd~d~~lsfegNt~p 457 (577)
T COG0018 379 GEGVKMSTRAGNVVTLDDLLDEAGERAPEEMEEKEEKNEEIAEVVGIDAVRYADLS-RSRDKDYVFDWDKALSFEGNTAP 457 (577)
T ss_pred CCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCEEEHHHHHHCCCCCCH
T ss_conf 87763422488657899999999887666765432115777777524067899886-28999947539999744599721
Q ss_pred HH----HHHHHHHHHHHCC-CCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 67----7889999976302-466-------78975699999999999999999881688999999999999999999862
Q gi|254780802|r 680 FI----QQIWRLIYNAKDE-LQT-------SSTKKDISLISKSTKFLERIEENYQNLSFNKAVANIHELVNVISKPLMEI 747 (869)
Q Consensus 680 fl----~kl~~l~~~~~~~-~~~-------~~~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai~~i~~f~n~ls~~y~~~ 747 (869)
++ -|+.+++..+.+. ... -.....+.++..+.++-.-+.++.++++-+..+.-++++...|++||-..
T Consensus 458 YvQYA~ARi~SIlrka~e~~~~~~~~~~~~l~~~~E~~L~~~L~~fp~vl~~aa~~~~Ph~la~YL~~LA~~Fn~fY~~~ 537 (577)
T COG0018 458 YVQYAHARICSILRKAGEDELDLSTEADALLTELEERELVKKLLEFPEVLEEAAEELEPHRLANYLYDLAGSFNSFYNAC 537 (577)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 59999999999998544434553322210106827999999999849999999985695599999999999999998508
Q ss_pred C
Q ss_conf 1
Q gi|254780802|r 748 A 748 (869)
Q Consensus 748 ~ 748 (869)
.
T Consensus 538 ~ 538 (577)
T COG0018 538 P 538 (577)
T ss_pred C
T ss_conf 7
No 53
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=98.97 E-value=5.9e-08 Score=72.51 Aligned_cols=120 Identities=23% Similarity=0.272 Sum_probs=88.6
Q ss_pred CCCCCCHHHCCCCCCCCCCCCC----------------------CCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH----
Q ss_conf 4742100000012222100123----------------------46335666553013321111134321011455----
Q gi|254780802|r 626 GPLEKMSKSKKNVIDPMKVIKS----------------------YGADTARLFVLSDSPPDRDIIWSNKGVDSTYQ---- 679 (869)
Q Consensus 626 ~~g~KMSKSkGNvi~p~~~i~~----------------------yGaD~lRl~~~~~~~~~~d~~~s~~~i~~~~r---- 679 (869)
.+|.|||+.+||+|.++|++++ -|.|++||++++ .++..++.|+.+.+...-.
T Consensus 373 ~~~~kMStR~G~~v~L~dlldea~~~a~~~~~~~~e~~~~ia~~Vg~~Airy~~L~-~~~~~~~~Fd~d~~l~~~g~t~~ 451 (570)
T PRK01611 373 GEGVKMSTRAGNVVTLDDLLDEAVERARELVEESEEEKEEIAKAVGIDAVRYFDLS-RSRDSDYDFDLDLALSFEGNNPP 451 (570)
T ss_pred CCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCHHHHHHHHHC-CCCCCCCEECHHHHHHHCCCCCH
T ss_conf 86764424678745899999999999998763377678899976341040264440-68888822268998632389825
Q ss_pred HHH----HHHHHHHHHHCCCCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 677----889999976302466-------7897569999999999999999988168899999999999999999986
Q gi|254780802|r 680 FIQ----QIWRLIYNAKDELQT-------SSTKKDISLISKSTKFLERIEENYQNLSFNKAVANIHELVNVISKPLME 746 (869)
Q Consensus 680 fl~----kl~~l~~~~~~~~~~-------~~~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai~~i~~f~n~ls~~y~~ 746 (869)
+++ |+.+++..+...... -..+..+.++..+.++-.-+..+.++++-+..+.-++++...|++||-.
T Consensus 452 YiQYa~AR~~SIlrK~~~~~~~~~~~~~~l~~~~E~~Li~~l~~fp~vv~~a~~~~~Ph~l~~YL~~La~~Fn~fY~~ 529 (570)
T PRK01611 452 YVQYAHARICSILRKAAEEGLAAAADLSLLTEEEELELIKKLAEFPEVVESAAEELEPHRIANYLYELAGAFHSFYNA 529 (570)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 788999999999986312345443433346998999999999887999999999688189999999999999999851
No 54
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=98.87 E-value=4.9e-08 Score=73.02 Aligned_cols=120 Identities=17% Similarity=0.160 Sum_probs=84.1
Q ss_pred CCCCCCHHHCCCCCCCCCCCCC-------------------------CCHHHHHHHHHHCCCCCCCCCCCCCCHHHH---
Q ss_conf 4742100000012222100123-------------------------463356665530133211111343210114---
Q gi|254780802|r 626 GPLEKMSKSKKNVIDPMKVIKS-------------------------YGADTARLFVLSDSPPDRDIIWSNKGVDST--- 677 (869)
Q Consensus 626 ~~g~KMSKSkGNvi~p~~~i~~-------------------------yGaD~lRl~~~~~~~~~~d~~~s~~~i~~~--- 677 (869)
.+|+||||.+||+|.+++++++ -|+|++||++++ ..+.+++.|+.+.+...
T Consensus 367 ~~g~kMStR~G~~v~l~dll~e~~~~a~~~~~~r~~~~~~~~~ia~~VG~~Airy~~L~-~~~~~~~~FD~d~~~~~~~~ 445 (562)
T PRK12451 367 KDGKKMSTRKGRVILLEEVLEEAIELAKQNIEEKNPNLKQKEEVAKQVGVGAVIFHDLK-NERMHNIEFSLENMLKFEGE 445 (562)
T ss_pred CCCCCEEECCCCEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHH-CCCCCCCCCCHHHHHHCCCC
T ss_conf 48863020578756899999999999999987527771328999998531130134443-16787776789999742578
Q ss_pred -HHHHH----HHHHHHHHHHCCCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -55677----889999976302466----7897569999999999999999988168899999999999999999986
Q gi|254780802|r 678 -YQFIQ----QIWRLIYNAKDELQT----SSTKKDISLISKSTKFLERIEENYQNLSFNKAVANIHELVNVISKPLME 746 (869)
Q Consensus 678 -~rfl~----kl~~l~~~~~~~~~~----~~~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai~~i~~f~n~ls~~y~~ 746 (869)
.-+++ |+-+++......... ...+..+.++..+.+.-.-+..+.++++-+..+.-++++...|++||-.
T Consensus 446 ~~PYiQYAhARi~SIlrk~~~~~~~~~~~l~~~~e~~Li~~L~~fp~vv~~aa~~~~Ph~l~~Yl~~LA~~Fh~fY~~ 523 (562)
T PRK12451 446 TGPYVQYTHARACSILRKESVEFETCTFALKDDHSWSVVKLLNKFPQVIEAAFNKNEPSVISKYVLDVAQSFNKYYGN 523 (562)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 873699999999999974457755433446997999999999988999999998499379999999999999999806
No 55
>cd00672 CysRS_core This is the catalytic core domain of cysteinyl tRNA synthetase (CysRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=98.81 E-value=8.3e-10 Score=85.18 Aligned_cols=87 Identities=20% Similarity=0.195 Sum_probs=74.6
Q ss_pred CCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 83899807789789874004779778999999777189855676881402058999999809999999999999999999
Q gi|254780802|r 34 KKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQL 113 (869)
Q Consensus 34 ~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~~ 113 (869)
.+--+..==|.+-+.+|+||+|+++.-|++.||.+-.||+|.|.+-.--=+=.|...|.+.++...+.++++++.+.+++
T Consensus 19 ~~V~~Y~CGPTVYd~~HiGhaR~~v~~D~l~R~L~~~gy~V~~V~NITDIDDKII~~A~~~~~~~~ela~~y~~~f~~d~ 98 (213)
T cd00672 19 GLVRMYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAREEGLSIKEVAEYYTAEFFEDM 98 (213)
T ss_pred CEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 97889978996889987653425768999999999639935899972675189999999839999999999999999999
Q ss_pred HHCCCEE
Q ss_conf 9819176
Q gi|254780802|r 114 QSIGLSI 120 (869)
Q Consensus 114 ~~lG~~~ 120 (869)
++||+--
T Consensus 99 ~~Lni~~ 105 (213)
T cd00672 99 KALNVLP 105 (213)
T ss_pred HHHCCCC
T ss_conf 9828999
No 56
>pfam00750 tRNA-synt_1d tRNA synthetases class I (R). Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only arginyl tRNA synthetase.
Probab=98.78 E-value=7.4e-08 Score=71.83 Aligned_cols=59 Identities=32% Similarity=0.474 Sum_probs=50.4
Q ss_pred CCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 88389980778978987400477977899999977718985567688140205899999
Q gi|254780802|r 33 KKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAA 91 (869)
Q Consensus 33 ~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~ 91 (869)
+++..|-..=|+|+|+|||||+||-++.|.++|-.+-.||+|....=..-.|..+-..+
T Consensus 18 ~kkI~vE~~S~Np~kplHvGHlR~aiiGdslarll~~~G~~V~r~~yvnD~G~Qi~~l~ 76 (345)
T pfam00750 18 NKKVVVEFSSPNPAKPIHVGHLRSTIIGDALSRLLEFLGYDVVRENYVGDWGTQFGMLI 76 (345)
T ss_pred CCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHH
T ss_conf 98899985389999885041015279999999999987995989987686489999999
No 57
>cd00672 CysRS_core This is the catalytic core domain of cysteinyl tRNA synthetase (CysRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=98.73 E-value=4.3e-08 Score=73.41 Aligned_cols=49 Identities=33% Similarity=0.293 Sum_probs=40.8
Q ss_pred CEEEECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 70640474210000001222210012346335666553013321111134
Q gi|254780802|r 621 SKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDIIWS 670 (869)
Q Consensus 621 ~~~~~~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~~~~~~~~~~d~~~s 670 (869)
++.+..+|+|||||+||++++.+++++|+++++|+++++ +..-+.++||
T Consensus 165 ~g~l~~~g~KMSKSlgN~~~i~dll~~~~~~~~R~~lls-~hYR~~l~fs 213 (213)
T cd00672 165 TGHLTIDGEKMSKSLGNFITVRDALKKYDPEVLRLALLS-SHYRSPLDYS 213 (213)
T ss_pred HHHHHHCCCEECCCCCCEEEHHHHHHCCCHHHHHHHHHH-CCCCCCCCCC
T ss_conf 457872756403457875269999843999999999982-7378987899
No 58
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=98.64 E-value=4.7e-07 Score=66.30 Aligned_cols=119 Identities=22% Similarity=0.327 Sum_probs=81.1
Q ss_pred CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH-------------------
Q ss_conf 8883899807789789874004779778999999777189855676881402058999999-------------------
Q gi|254780802|r 32 NKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAR------------------- 92 (869)
Q Consensus 32 ~~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~------------------- 92 (869)
.+++..|-..=|+|+|+|||||+||-++.|.++|-.+..||+|....=-.-.|..+...+.
T Consensus 116 ~~~kv~VEf~S~Np~kplHvGH~R~aiiGdslaril~~~G~~V~r~~yvnD~G~Qi~~l~~~~~~~~~~~~~~~~l~~~Y 195 (570)
T PRK01611 116 KGKKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLAASLELEEAAAKGLSDLERRY 195 (570)
T ss_pred CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 99779998448999998623358878999999999998399079999978742799999999999604888706679999
Q ss_pred ----------------------HHCCCHH------HHHHHHHHHHHHHHHHCCCEEECCCCEECCCHHHHH--HHHHHHH
Q ss_conf ----------------------8099999------999999999999999819176646982147735999--9999999
Q gi|254780802|r 93 ----------------------EHNVHPK------MWTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYH--CQQLLFL 142 (869)
Q Consensus 93 ----------------------e~~~~~~------~~~~~~i~~~k~~~~~lG~~~DW~r~y~T~d~~y~~--~v~w~f~ 142 (869)
+...++. ......++.+++.+++||+.+|- ...+-.++. .+..++.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~~~~~l~~~~~~l~~l~I~fD~----~~~Es~~~~~~~i~~v~~ 271 (570)
T PRK01611 196 REAKKEPDEDPEEYAGEYIVKLAAPGDEELEELWRKAVDISLDEIKEDLDRLGVKFDV----FFSESSLYNDGKVEEVVE 271 (570)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC----CCCHHHHHHCCCHHHHHH
T ss_conf 9985034658545578999998717988899999999999999999999974876442----126688985774499999
Q ss_pred HHHHCCCEEECC
Q ss_conf 999889634122
Q gi|254780802|r 143 DFMKHNVIVRKT 154 (869)
Q Consensus 143 ~L~~kGliyrg~ 154 (869)
.|.++|++|+..
T Consensus 272 ~L~~~~~~~e~d 283 (570)
T PRK01611 272 DLKEKGLLYESD 283 (570)
T ss_pred HHHHCCCEEECC
T ss_conf 998679589318
No 59
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=98.61 E-value=1e-06 Score=63.98 Aligned_cols=121 Identities=16% Similarity=0.234 Sum_probs=84.6
Q ss_pred CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH-------------------
Q ss_conf 8883899807789789874004779778999999777189855676881402058999999-------------------
Q gi|254780802|r 32 NKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAR------------------- 92 (869)
Q Consensus 32 ~~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~------------------- 92 (869)
.+++..+=.-=|+|||+|||||+|+-++.|.++|-.+-.||+|..-.=-.-.|..|-..+.
T Consensus 111 ~~k~v~vEfvSaNPtgpLHVGH~R~aiiGdsLariL~~~G~~V~reyYinD~G~Qi~~l~~~~~~~~~~~~~~~~~~~~l 190 (562)
T PRK12451 111 CEKTVVIDYSSPNIAKPFSMGHLRSTMIGNSLKHIAEKCGYEVVGINYIGDWGTQFGKLITAYKKWGNEAVVKEDPIREL 190 (562)
T ss_pred CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCHHHH
T ss_conf 99879998528999988624224627999999999998698599999747730899999999998544011246757899
Q ss_pred --------H---H----------------CCCHH------HHHHHHHHHHHHHHHHCCCEEECCCCEECCCHHHHHHHHH
Q ss_conf --------8---0----------------99999------9999999999999998191766469821477359999999
Q gi|254780802|r 93 --------E---H----------------NVHPK------MWTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQL 139 (869)
Q Consensus 93 --------e---~----------------~~~~~------~~~~~~i~~~k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w 139 (869)
+ . ..++. ......++.+++.+++||+.+|- | ..+-.|...+..
T Consensus 191 ~~~y~~~~~~~~~~~~~~~~~~~~~~~le~~d~~~~~~~~~~~~~~l~~~~~~l~~l~v~fD~---~-~~Es~~~~~~~~ 266 (562)
T PRK12451 191 FKLYVQFHEEVKDDEELEEEGRAWFKKLEEGDEEAVELWNWFRHESLKEFSRIYELLGVEFTN---F-QGEAFYNNLMED 266 (562)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE---E-ECHHHHHHHHHH
T ss_conf 999999998650480068999999998766899999999999999999999999992972014---5-232445124789
Q ss_pred HHHHHHHCCCEEECCEE
Q ss_conf 99999988963412213
Q gi|254780802|r 140 LFLDFMKHNVIVRKTAQ 156 (869)
Q Consensus 140 ~f~~L~~kGliyrg~~p 156 (869)
.+..|.++|++|+..--
T Consensus 267 ~i~~L~~~g~~~e~dGA 283 (562)
T PRK12451 267 FIGILEEHDLLEESEGA 283 (562)
T ss_pred HHHHHHHCCCEEECCCC
T ss_conf 99999977978947997
No 60
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=98.47 E-value=1.3e-06 Score=63.18 Aligned_cols=63 Identities=22% Similarity=0.262 Sum_probs=47.2
Q ss_pred EEECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC--CCHHHHHHHHHHHH
Q ss_conf 6404742100000012222100123463356665530133211111343--21011455677889
Q gi|254780802|r 623 VVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDIIWSN--KGVDSTYQFIQQIW 685 (869)
Q Consensus 623 ~~~~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~~~~~~~~~~d~~~s~--~~i~~~~rfl~kl~ 685 (869)
++.++|+|||||+||+|++.|.++-+..+++.+|+.....+.+.+.|+. +.+.++.+++++.+
T Consensus 278 fLd~~G~KmSsSkGngit~~ewL~~~~PEsl~rfm~~~pkpaK~l~fd~ipk~~DEY~~~~~~y~ 342 (513)
T PRK00750 278 FLDGKGQKISKSKGNGISIEDWLEYAPPESLARFMYARPKPAKRLYFDVIPKLVDEYDKFLRKYA 342 (513)
T ss_pred EECCCCCEECCCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 98379866305689723899999755999999999718898840156566677899999998851
No 61
>TIGR00456 argS arginyl-tRNA synthetase; InterPro: IPR001278 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Arginyl-tRNA synthetase (6.1.1.19 from EC) has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available . ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=98.42 E-value=6.3e-06 Score=58.56 Aligned_cols=204 Identities=21% Similarity=0.232 Sum_probs=132.9
Q ss_pred HHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHCCCCCCCCCCCEEC
Q ss_conf 40145554433202345553201347873223200222235532322433235870013062022102567775441104
Q gi|254780802|r 539 QYIGGIEHAVLHLLYARFFAHILKKIGYIEIDEPFKRLFTQGMVVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLS 618 (869)
Q Consensus 539 ~~i~g~d~~~~~~~~~r~~~~~l~~~g~~~~~~pf~~l~~~G~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 618 (869)
+++-|+||. +|+ .|++ .++..+|++.-. +-=..+..||+....|.+|+-..|+.+..+.+..
T Consensus 353 i~V~gsdh~-~h~--~q~~-~~~e~LG~~~~~-~~L~~~~f~~v~~~~GKkmkTR~G~~i~ld~ll~------------- 414 (600)
T TIGR00456 353 IYVWGSDHK-LHI--AQVF-AILEKLGYLSKK-KELEHLEFGMVPLGSGKKMKTRRGNVISLDNLLD------------- 414 (600)
T ss_pred EEEEECCHH-HHH--HHHH-HHHHHCCCCCCC-CCEEEEEEEEEECCCCCCCCCCCCCCEEHHHHHH-------------
T ss_conf 987405188-899--9999-999971653788-6168998764325788854345566022344689-------------
Q ss_pred CCCEEEECCCCCCHHHCCCCCCCC-----------CCCCCCCHHHHHHHHHHCCCCCCCCCCCCC-CHH-----------
Q ss_conf 897064047421000000122221-----------001234633566655301332111113432-101-----------
Q gi|254780802|r 619 DNSKVVIGPLEKMSKSKKNVIDPM-----------KVIKSYGADTARLFVLSDSPPDRDIIWSNK-GVD----------- 675 (869)
Q Consensus 619 ~~~~~~~~~g~KMSKSkGNvi~p~-----------~~i~~yGaD~lRl~~~~~~~~~~d~~~s~~-~i~----------- 675 (869)
||||.-+|+|.-+ ++++.=|.||+|+++++ ..++.|+.|+++ .+.
T Consensus 415 -----------e~~~RA~~~~~~~~~~~~~~e~~e~~a~~vG~gAvry~~l~-~~~~~~~~Fd~d~~~L~f~~n~~pY~Q 482 (600)
T TIGR00456 415 -----------EASKRAGNVITKRNTDLEQDEAEEKVADAVGIGAVRYADLS-KNRETHYVFDWDTAMLSFEGNTAPYIQ 482 (600)
T ss_pred -----------HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH-HCCCCCCEEECCCHHHCCCCCCCCHHH
T ss_conf -----------99999999996110135222037899999736799999997-278988155012011115788743258
Q ss_pred HHHHHHHHHHH-HHHHHHC----CCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC-
Q ss_conf 14556778899-9997630----246678-9756999999999999999998816889999999999999999998621-
Q gi|254780802|r 676 STYQFIQQIWR-LIYNAKD----ELQTSS-TKKDISLISKSTKFLERIEENYQNLSFNKAVANIHELVNVISKPLMEIA- 748 (869)
Q Consensus 676 ~~~rfl~kl~~-l~~~~~~----~~~~~~-~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai~~i~~f~n~ls~~y~~~~- 748 (869)
-++-+++.+.+ -...... ...... .+..+.|+..+.++-.-|.++.+..+.+..++-+|++...|++||-..-
T Consensus 483 YAhaR~~Silr~~~~~~~~~~~~~~~~~~~~~~E~~L~~~L~~fp~~~~~~~~~~~p~~l~~Yly~LA~~F~sfY~~~~v 562 (600)
T TIGR00456 483 YAHARICSILRKKAEIDGEKLIADDFLLLKEEKEKELLKLLLQFPEVIEEAAEEREPHVLTNYLYELAKLFSSFYKACPV 562 (600)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 88999999876310233134553200036888899999998564899999998547188899999997764236641778
Q ss_pred -CCC---CCCCHHH---HHHHHHHHHHHHHC
Q ss_conf -100---0221799---99999999999972
Q gi|254780802|r 749 -KKK---SNADRIS---TIRYILEKLIIMMS 772 (869)
Q Consensus 749 -k~~---~~~~~~~---~l~~vl~~l~~lLa 772 (869)
... ....|+. ..+.+|+..+.||-
T Consensus 563 ~~~~~~~~~~~RL~L~~~~~~~L~n~L~LLG 593 (600)
T TIGR00456 563 LDAENEELAKARLALLKATRQTLKNGLELLG 593 (600)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 8986266899999999999999999887608
No 62
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.39 E-value=6.4e-06 Score=58.51 Aligned_cols=151 Identities=20% Similarity=0.296 Sum_probs=101.3
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCC-CCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH
Q ss_conf 689998999999998598036767888-8389980778978987400477977899999977718985567688140205
Q gi|254780802|r 7 SPQETDSIWQSAWYDSNIFKAENGKNK-KKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGM 85 (869)
Q Consensus 7 ~~~~iE~kwq~~W~~~~~fe~~~~~~~-~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~Gl 85 (869)
++....+..++...+.+-|-...+.++ ++..|-.-=|+|+|+|||||+||-++.|+++|-.+..||+|....=..-.|.
T Consensus 89 ~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSaNptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~G~ 168 (577)
T COG0018 89 SPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSANPTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDWGT 168 (577)
T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHH
T ss_conf 88999999999997333556744368998799987479999985233235368899999999983997667866785799
Q ss_pred HHHHHH--------------------------------HH-HCC---------------CH-----HHHHHHHHHHHHHH
Q ss_conf 899999--------------------------------98-099---------------99-----99999999999999
Q gi|254780802|r 86 PAENAA--------------------------------RE-HNV---------------HP-----KMWTYQNIKVMRKQ 112 (869)
Q Consensus 86 Pie~~~--------------------------------~e-~~~---------------~~-----~~~~~~~i~~~k~~ 112 (869)
-+...+ .+ ... ++ +..+...+..+++.
T Consensus 169 Q~~~l~~~~~~~~~e~~~~~~~~~~~lg~~y~~i~~~~~~~~~~~~~~~~~~~~k~e~~d~~~~lw~~~v~~~l~~~k~~ 248 (577)
T COG0018 169 QIGMLALSYEKRGREALGLTPEPDGYLGEYYVKIAKDLEEDPGNDEEEAREEVEKLESGDEEAELWRKFVDLSLEGIKET 248 (577)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999554101377772068899999999999748461267889999988647757899999999999999999
Q ss_pred HHHCCCEEECCCCEECCCHHHH-HHHHHHHHHHHHCCCEEE--CCEEEECC
Q ss_conf 9981917664698214773599-999999999998896341--22133214
Q gi|254780802|r 113 LQSIGLSIDWSKDFATCDVDYY-HCQQLLFLDFMKHNVIVR--KTAQVNWD 160 (869)
Q Consensus 113 ~~~lG~~~DW~r~y~T~d~~y~-~~v~w~f~~L~~kGliyr--g~~pV~wc 160 (869)
+.+||+.+| .|......|+ ..+.-+...|.++|++|+ |..+|.|.
T Consensus 249 l~~l~V~fD---~~~~E~e~~~~~~~~~vv~~L~~~~~~~e~~GA~~vdl~ 296 (577)
T COG0018 249 LDRLGVKFD---VYDSEGESFYNGKVEKVVEDLEEKGLLYEDDGALVVDLL 296 (577)
T ss_pred HHHHCCCCE---EEECCCHHHHCCCHHHHHHHHHHCCCEEEECCEEEEEHH
T ss_conf 999295300---132342655266499999999866977600995898643
No 63
>cd00671 ArgRS_core This is the catalytic core domain of Arginyl tRNA synthetase (ArgRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The other subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=98.39 E-value=2.9e-06 Score=60.93 Aligned_cols=54 Identities=33% Similarity=0.535 Sum_probs=46.3
Q ss_pred EEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 980778978987400477977899999977718985567688140205899999
Q gi|254780802|r 38 VLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAA 91 (869)
Q Consensus 38 i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~ 91 (869)
|-..=|+|+|+|||||+||-++.|.++|-.+-.|++|....=..-.|+.+-..+
T Consensus 4 vEf~S~Np~kplHvGHlR~aiiGdslaril~~~G~~V~r~~yvnD~G~Qi~~l~ 57 (267)
T cd00671 4 VEFVSANPTGPLHVGHLRNAIIGDSLARILEFAGYDVTREYYINDWGRQIGLLI 57 (267)
T ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHH
T ss_conf 885589999985031036389999999999987995889885078609999999
No 64
>KOG0437 consensus
Probab=98.34 E-value=9.3e-08 Score=71.14 Aligned_cols=150 Identities=16% Similarity=0.260 Sum_probs=87.1
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCC---------
Q ss_conf 21110001112211232222234223334684634742000111001000224542100245642110136---------
Q gi|254780802|r 423 RKINFRLRDWCISRQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTWKKIFCVKC--------- 493 (869)
Q Consensus 423 ~~~~~~l~DW~ISRqr~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l~~~~~~~~~~~~~~--------- 493 (869)
+.+..+|..|..||.---|+.|| | |..|++ +.|++...|+..+...+
T Consensus 559 E~tLdWL~~wacsRsyGLGTrlP-W---------------------D~qyLv--ESLSDSTIYmAyYTvaHll~~d~~g~ 614 (1080)
T KOG0437 559 EDTLDWLGQWACSRSYGLGTRLP-W---------------------DEQYLV--ESLSDSTIYMAYYTVAHLLHRDLYGK 614 (1080)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCC-C---------------------CHHHHH--HHCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 88889987510120116777788-7---------------------678887--76031289999999999987764067
Q ss_pred -CCCCCCCCCCCCCCCCCCCCCCCCCCC--------CCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf -764435643234566643332233555--------65441013566411433440145554433202345553201347
Q gi|254780802|r 494 -GSEALRETDTMDTFVDSSWYYMRYMTP--------HAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKI 564 (869)
Q Consensus 494 -~~~~~r~~dvld~w~dS~~~~~~~~~~--------~~~~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~ 564 (869)
.+++--.+ |+.-|..|-+.....+ ......-++.|++|||.|++++|.|..-+|+.|.-+.|-.|...
T Consensus 615 ~~~plgi~~---~QMtdeVwdYvF~~~~~~k~t~i~~e~L~~lr~eF~Y~YPiDlrvsGKDLi~NHLtfflynHvAl~~~ 691 (1080)
T KOG0437 615 VEGPLGIKP---DQMTDEVWDYVFLNEPYPKNTAIPEEALSNLRREFEYFYPIDLRVSGKDLIPNHLTFFLYNHVALFPE 691 (1080)
T ss_pred CCCCCCCCH---HHCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEEHHHHCCC
T ss_conf 766577894---65478988786506998767784099999999763100301344234213523136755400231540
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHC
Q ss_conf 87322320022223553232243323587001306202210
Q gi|254780802|r 565 GYIEIDEPFKRLFTQGMVVHETYYQLEGIKKKYLKPDEVIL 605 (869)
Q Consensus 565 g~~~~~~pf~~l~~~G~v~~~~~~~~~~~~~~~~~p~~~~~ 605 (869)
. ..| +.+..+|+.+- ..-+||++.||+......+-
T Consensus 692 k----~WP-kgiraNGHLmL-NsEKMSKSTGNfmTL~qaie 726 (1080)
T KOG0437 692 K----KWP-KGIRANGHLML-NSEKMSKSTGNFMTLEQAIE 726 (1080)
T ss_pred C----CCC-CCCCCCCEEEE-CCHHCCCCCCCEEEHHHHHH
T ss_conf 0----286-53111766773-31220545677245999898
No 65
>cd00674 LysRS_core_class_I This is the catalytic core domain of lysyl tRNA synthetase (LysRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=98.31 E-value=3.3e-07 Score=67.39 Aligned_cols=50 Identities=40% Similarity=0.642 Sum_probs=42.0
Q ss_pred CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 888389980778978987400477977899999977718985567688140
Q gi|254780802|r 32 NKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDA 82 (869)
Q Consensus 32 ~~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~ 82 (869)
+++.+.+-.| -.|||.+|||+.+-.+..|+++|-.|-+|+.|.+.+.||-
T Consensus 17 ~k~~~v~~tG-~~PSG~~HIGn~rEv~~~~~V~ral~~~g~~~~~i~~~DD 66 (354)
T cd00674 17 GKEKYVVASG-ISPSGLIHIGNFREVVTADAVRRALRDLGFEVRLIYSWDD 66 (354)
T ss_pred CCCCEEEECC-CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEC
T ss_conf 8985899478-7999886320550178899999999975996799998405
No 66
>TIGR00456 argS arginyl-tRNA synthetase; InterPro: IPR001278 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Arginyl-tRNA synthetase (6.1.1.19 from EC) has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available . ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=98.29 E-value=1.8e-06 Score=62.29 Aligned_cols=66 Identities=30% Similarity=0.520 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 989999999985980367678888389980778978987400477977899999977718985567
Q gi|254780802|r 11 TDSIWQSAWYDSNIFKAENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLH 76 (869)
Q Consensus 11 iE~kwq~~W~~~~~fe~~~~~~~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~ 76 (869)
+|.=+|.-=.+.+.|=..+-.+.+|-+|=.-=|+|||+||+||+||=+++|+++|=.++.||+|..
T Consensus 95 ~~~l~~~~~~~~e~yG~~~~~~~~ki~~EfsSaNp~gplH~GHlR~aiIGD~L~r~l~~~G~~V~r 160 (600)
T TIGR00456 95 LENLIQKILEQKEKYGSKKLKESKKIIIEFSSANPAGPLHIGHLRNAIIGDSLARILEFLGYDVIR 160 (600)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 999988785012024676657870799987658889761100002577788999999875970798
No 67
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.15 E-value=6.8e-08 Score=72.08 Aligned_cols=102 Identities=19% Similarity=0.138 Sum_probs=59.7
Q ss_pred EEEEEECCCCCCCCCEEEEECCCCCCHHHHHCCHHH--HHHH-HHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEE
Q ss_conf 653200134443232003302443203454131458--9998-8653111124555430255323786103777774157
Q gi|254780802|r 248 ILVYTTRPETIFGASFIAIAVDHSISEKLSCDNTDI--KEFC-DEEKQKGTSLSVLDKTEKKGIYTGIHVKHPLNPNVVI 324 (869)
Q Consensus 248 l~~~TtrPeTl~g~~~i~v~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~~~~~P~~~~~~i 324 (869)
....|.+|||++|.++.||.++..+......++... ..-+ .....+....+.+ ....+..|+|..+.+|.+
T Consensus 208 ~~l~~~wPE~Vk~mq~nWIg~s~g~~v~f~~~~~~~~~~~~vfttr~dt~~gvt~~-~~a~~h~lv~~~~~~~~~----- 281 (814)
T COG0495 208 DKLATLWPETVKGMQRNWIGPSEGYEVAFVVDGEEEIVSIEVFTTRPDTLFGVTYV-VLAPEHPLVGKLVTNPQT----- 281 (814)
T ss_pred HHHCCCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCEEEEECCCCCCCCEEEE-EEECCCHHHHHHHCCCCC-----
T ss_conf 65424795669989872707888758998517764410024466357311674899-970786678987418651-----
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 76311234545333222111346721101221
Q gi|254780802|r 325 PVYIANFVFMNYGTGAIFGCPFADQRDMDFAK 356 (869)
Q Consensus 325 pv~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~ 356 (869)
+.+++||++..|||+|+++|+|.+.|+....
T Consensus 282 -~~~a~fv~~~~~~~~~~~~~~~~~k~gv~~g 312 (814)
T COG0495 282 -PLVAEFVDECKGTGVVESVPAHAEKDGVFLG 312 (814)
T ss_pred -HHHHHHHHHHCCCCCEEEEECCCCCCCEECC
T ss_conf -6699999886178715630456877631136
No 68
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=98.11 E-value=2.2e-05 Score=54.87 Aligned_cols=98 Identities=20% Similarity=0.299 Sum_probs=67.0
Q ss_pred CCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 83899807789789874004779778999999777189855676881402058999999809999999999999999999
Q gi|254780802|r 34 KKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQL 113 (869)
Q Consensus 34 ~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~~ 113 (869)
+.-++|==||.|||.||+|||++-.+-..+||- ..|+-+|+ ||-|--..+ .-..++.+.+.+++
T Consensus 98 ~gkV~tRFaP~P~G~LHiGhar~al~N~~~Ak~--~~G~~iLR---~eDTdp~~~-----------r~~~e~~~~I~~dl 161 (566)
T PRK04156 98 KGKVVMRFAPNPSGPLHLGHARAAILNDEYAKR--YGGKFILR---FEDTDPRTK-----------RPDPEAYDMIREDL 161 (566)
T ss_pred CCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEE---ECCCCCCCC-----------CCCHHHHHHHHHHH
T ss_conf 883899528699987618999999996999998--09989999---658883325-----------56378999999999
Q ss_pred HHCCCEEECCCCEECCC--HHHHHHHHHHHHHHHHCCCEEEC
Q ss_conf 98191766469821477--35999999999999988963412
Q gi|254780802|r 114 QSIGLSIDWSKDFATCD--VDYYHCQQLLFLDFMKHNVIVRK 153 (869)
Q Consensus 114 ~~lG~~~DW~r~y~T~d--~~y~~~v~w~f~~L~~kGliyrg 153 (869)
+=||+ +|+.+|.+.| ..|++. -.+|-++|+.|.-
T Consensus 162 ~WLG~--~~de~~~qSdr~~~y~~~----a~~Li~~G~AY~c 197 (566)
T PRK04156 162 KWLGV--KPDEVVIQSDRLEIYYEY----ARKLIEMGGAYVC 197 (566)
T ss_pred HHHCC--CCCCCEEHHHHHHHHHHH----HHHHHHCCCEEEC
T ss_conf 98299--978016657619999999----9999987992777
No 69
>pfam01921 tRNA-synt_1f tRNA synthetases class I (K). This family includes only lysyl tRNA synthetases from prokaryotes.
Probab=98.04 E-value=4.2e-06 Score=59.80 Aligned_cols=49 Identities=29% Similarity=0.306 Sum_probs=40.3
Q ss_pred CCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 88389980778978987400477977899999977718985567688140
Q gi|254780802|r 33 KKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDA 82 (869)
Q Consensus 33 ~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~ 82 (869)
+.++.+-.| -.|||.+|||+++--+..|+++|..|.+|++|.+...||-
T Consensus 18 ~~~~v~~tG-~~PSG~~HIGnfrEv~~~~~V~~al~~~g~~~~~i~~~DD 66 (355)
T pfam01921 18 KGEILVETG-IGPSGLPHIGNFREVLRTDAVRRALRKRGFETRLIYFSDD 66 (355)
T ss_pred CCCEEEECC-CCCCCCCEEECCCHHHHHHHHHHHHHHCCCCEEEEEEECC
T ss_conf 985899526-6899886421560179999999999974987699998215
No 70
>cd00807 Gln_GluRS_non_core Glutaminyl-tRNA synthetase (GlnRS) and non-descriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Gln or Glu, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-descriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=98.01 E-value=1.4e-05 Score=56.23 Aligned_cols=90 Identities=20% Similarity=0.242 Sum_probs=67.1
Q ss_pred EEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 98077897898740047797789999997771898556768814020589999998099999999999999999999819
Q gi|254780802|r 38 VLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQLQSIG 117 (869)
Q Consensus 38 i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~~~~lG 117 (869)
+|==+|-|||.||+||+++-.+--.+||- ..|+=+|+.=-. +|.....++.+.+.++++-||
T Consensus 3 ~tRFAPsPtG~lHiG~artal~n~l~Ar~--~~G~~iLRiEDT----------------D~~r~~~e~~~~I~~~L~wLG 64 (238)
T cd00807 3 VTRFPPEPNGYLHIGHAKAAILNFEYAKR--YGGKLILRFDDT----------------NPKKEDEEAYDSILEDLEWLG 64 (238)
T ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHH--HCCEEEEEECCC----------------CCCCCCCHHHHHHHHHHHHHC
T ss_conf 69608898986438999999999999998--299699986778----------------987676168999999999848
Q ss_pred CEEECCCCEECCCH--HHHHHHHHHHHHHHHCCCEE
Q ss_conf 17664698214773--59999999999999889634
Q gi|254780802|r 118 LSIDWSKDFATCDV--DYYHCQQLLFLDFMKHNVIV 151 (869)
Q Consensus 118 ~~~DW~r~y~T~d~--~y~~~v~w~f~~L~~kGliy 151 (869)
+ +|+.+|...+- .|++. ..+|.++|+.|
T Consensus 65 l--~~De~~~QS~r~~~y~~~----a~~Li~~G~AY 94 (238)
T cd00807 65 I--KPDEITYASDYFDLYYEY----AEKLIKMGKAY 94 (238)
T ss_pred C--CCCCCEECCCCHHHHHHH----HHHHHHCCCCC
T ss_conf 9--999315636679999999----99999879987
No 71
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=97.92 E-value=0.00015 Score=49.12 Aligned_cols=58 Identities=24% Similarity=0.232 Sum_probs=42.0
Q ss_pred CCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCC-----HHHHHHHHHHH
Q ss_conf 474210000001222210012346335666553013321111134321-----01145567788
Q gi|254780802|r 626 GPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDIIWSNKG-----VDSTYQFIQQI 684 (869)
Q Consensus 626 ~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~~~~~~~~~~d~~~s~~~-----i~~~~rfl~kl 684 (869)
.+++|||||+||+|+++|+++-+-...|||++ +...|.+.++|+-+. +..+.|+.+..
T Consensus 273 kg~~~mSsSkG~~i~~~dwlev~~pE~lry~~-~r~kP~r~~~~d~~~~il~lvDEydr~e~~Y 335 (521)
T COG1384 273 KGGGKMSSSKGNVISLSDWLEVAPPEVLRYLI-ARTKPNRHIDFDFDLGILKLVDEYDRLERIY 335 (521)
T ss_pred CCCCCCCCCCCCEECHHHHHHHCCHHHEEEEE-EECCCCCCEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 48866556878578599998753984733235-4058874433178877447789999999987
No 72
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=97.79 E-value=5.7e-05 Score=52.01 Aligned_cols=93 Identities=22% Similarity=0.355 Sum_probs=65.4
Q ss_pred EEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 99807789789874004779778999999777189855676881402058999999809999999999999999999981
Q gi|254780802|r 37 FVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQLQSI 116 (869)
Q Consensus 37 ~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~~~~l 116 (869)
+.+==+|-|||.||+|||++-.+--.+||-+ .|+-+|+.=-. +|..-..++.+.+.++++=|
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~n~~~Ar~~--~G~fiLRiEDT----------------D~~R~~~e~~~~I~~~L~WL 71 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALLNYLYARKY--GGKFILRIEDT----------------DPERETPEAEDAILEDLEWL 71 (472)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHH--CCEEEEEECCC----------------CCCCCCHHHHHHHHHHHHHC
T ss_conf 4897795999854268899999979999983--99799996479----------------98878878999999999866
Q ss_pred CCEEECCC-CEECCC--HHHHHHHHHHHHHHHHCCCEEEC
Q ss_conf 91766469-821477--35999999999999988963412
Q gi|254780802|r 117 GLSIDWSK-DFATCD--VDYYHCQQLLFLDFMKHNVIVRK 153 (869)
Q Consensus 117 G~~~DW~r-~y~T~d--~~y~~~v~w~f~~L~~kGliyrg 153 (869)
|+ +|+. +|...+ ..|++. -.+|.++|+.|.-
T Consensus 72 Gl--~wde~~~~QS~r~~~Y~~~----~~~Li~~G~AY~c 105 (472)
T COG0008 72 GL--DWDEGPYYQSERFDIYYEY----AEKLIEKGKAYVC 105 (472)
T ss_pred CC--CCCCCEEEHHHHHHHHHHH----HHHHHHCCCEEEE
T ss_conf 88--8897614364239999999----9999987996886
No 73
>pfam00749 tRNA-synt_1c tRNA synthetases class I (E and Q), catalytic domain. Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only glutamyl and glutaminyl tRNA synthetases. In some organisms, a single glutamyl-tRNA synthetase aminoacylates both tRNA(Glu) and tRNA(Gln).
Probab=97.78 E-value=7.6e-05 Score=51.17 Aligned_cols=92 Identities=17% Similarity=0.318 Sum_probs=62.9
Q ss_pred EECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 80778978987400477977899999977718985567688140205899999980999999999999999999998191
Q gi|254780802|r 39 LEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQLQSIGL 118 (869)
Q Consensus 39 ~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~~~~lG~ 118 (869)
+==.|-|||.||+||++|-.+.-.+||- ..|.=+|+.=-.| +.-...++.+.+.++++-||+
T Consensus 4 tRFAPSPTG~lHiG~~rtAl~n~l~Ar~--~~G~fiLRIEDtD----------------~~R~~~e~~~~I~~dL~wLGl 65 (314)
T pfam00749 4 TRFAPSPTGYLHIGHARTALFNYLFAKN--YNGKFILRFDDTD----------------PEREKPEYEESILEDLKWLGI 65 (314)
T ss_pred EECCCCCCCCCCHHHHHHHHHHHHHHHH--HCCEEEEEECCCC----------------CCCCCHHHHHHHHHHHHHHCC
T ss_conf 9728898986448999999999999998--0998999968789----------------886876899999999999537
Q ss_pred EEECCC-CEECCCHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 766469-8214773599999999999998896341
Q gi|254780802|r 119 SIDWSK-DFATCDVDYYHCQQLLFLDFMKHNVIVR 152 (869)
Q Consensus 119 ~~DW~r-~y~T~d~~y~~~v~w~f~~L~~kGliyr 152 (869)
. |+. +|.-.+- ...=.-...+|.++|++|.
T Consensus 66 ~--wDe~~~~QS~r--~~~Y~~~~~~L~~~g~aY~ 96 (314)
T pfam00749 66 K--WDEKPYYQSDR--FDIYYKYAEELIEKGLAYV 96 (314)
T ss_pred C--CCCCCEEHHCC--HHHHHHHHHHHHHCCCCCC
T ss_conf 8--99883552020--9999999999997499522
No 74
>cd00418 GlxRS_core Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-descriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The descriminating form of GluRS differs from GlnRS and the non-descriminating form of GluRS in their C-terminal anti-codon binding domains.
Probab=97.75 E-value=6.3e-05 Score=51.74 Aligned_cols=86 Identities=20% Similarity=0.391 Sum_probs=60.7
Q ss_pred EECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 80778978987400477977899999977718985567688140205899999980999999999999999999998191
Q gi|254780802|r 39 LEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQLQSIGL 118 (869)
Q Consensus 39 ~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~~~~lG~ 118 (869)
|==+|-|||.||+||+++-.+--.+||- ..|.-+|+.= ..+|.....++.+.+.++++-||+
T Consensus 4 tRFAPsPtG~LHiG~ar~al~n~~~Ak~--~~G~~~LRie----------------DTD~~r~~~e~~~~I~~dL~wLGl 65 (223)
T cd00418 4 TRFAPSPTGYLHIGHARAALLNYLYAKK--YGGKFILRFD----------------DTDPEREVEEAEDSILEDLKWLGI 65 (223)
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHHHHH--HCCEEEEEEC----------------CCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 8708898985428999999999999998--5998999723----------------688640188899999999999189
Q ss_pred EEECCC-CEECCC--HHHHHHHHHHHHHHHHCC
Q ss_conf 766469-821477--359999999999999889
Q gi|254780802|r 119 SIDWSK-DFATCD--VDYYHCQQLLFLDFMKHN 148 (869)
Q Consensus 119 ~~DW~r-~y~T~d--~~y~~~v~w~f~~L~~kG 148 (869)
+|+. ++.+.+ +.|++. ..+|.++|
T Consensus 66 --~~d~~~~~QS~r~~~y~~~----~~~Li~~G 92 (223)
T cd00418 66 --KWDEGPYYQSDRFDIYYEY----AEKLIEEG 92 (223)
T ss_pred --CCCCCEEEHHHHHHHHHHH----HHHHHHCC
T ss_conf --9998685387589999999----99997569
No 75
>pfam01921 tRNA-synt_1f tRNA synthetases class I (K). This family includes only lysyl tRNA synthetases from prokaryotes.
Probab=97.74 E-value=0.00014 Score=49.33 Aligned_cols=51 Identities=18% Similarity=0.150 Sum_probs=40.4
Q ss_pred EEECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCH
Q ss_conf 6404742100000012222100123463356665530133211111343210
Q gi|254780802|r 623 VVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDIIWSNKGV 674 (869)
Q Consensus 623 ~~~~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~~~~~~~~~~d~~~s~~~i 674 (869)
+++.+|+|||||+||++++.++++-+...+|||++ ....+.+.++++-+.|
T Consensus 271 ~~~kgg~KmSsSkGn~is~~e~L~~~~pE~Lr~l~-~~~~P~~a~~l~fd~i 321 (355)
T pfam01921 271 ILLKGGGKMSSSKGNGITIEEWLEYAPPESLRFLM-FRVKPKKAKRLDFDVI 321 (355)
T ss_pred EEECCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHH-CCCCCCCCEEECCCHH
T ss_conf 99669971046889876999999866999999998-0428884512073044
No 76
>TIGR00463 gltX_arch glutamyl-tRNA synthetase; InterPro: IPR004526 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of E. coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure . ; GO: 0000166 nucleotide binding, 0004818 glutamate-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006424 glutamyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=97.72 E-value=1.1e-05 Score=56.84 Aligned_cols=110 Identities=21% Similarity=0.268 Sum_probs=72.8
Q ss_pred CEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHH--HHHHHHHHHHHHH
Q ss_conf 38998077897898740047797789999997771898556768814020589999998099999--9999999999999
Q gi|254780802|r 35 KYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPK--MWTYQNIKVMRKQ 112 (869)
Q Consensus 35 kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~--~~~~~~i~~~k~~ 112 (869)
--+++==+|.|||+||||||+.-++=+-+||-. .|+-.++-= ..+|+ .-..++-+.+.++
T Consensus 100 G~VV~RFaPnPsGpLhiGhArAa~lN~~fa~~Y--~GklIlR~d----------------DTdP~tkr~~~Eayd~i~eD 161 (600)
T TIGR00463 100 GEVVMRFAPNPSGPLHIGHARAAILNQYFAKKY--EGKLILRFD----------------DTDPRTKRVKPEAYDMILED 161 (600)
T ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHC--CCCEEEEEE----------------CCCCCCCCCCHHHHHHHHHH
T ss_conf 735773185454587523354223204668541--881799975----------------58788788872466524877
Q ss_pred HHHCCCEEECCCCEECCC--HHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCHHHHHCCC
Q ss_conf 998191766469821477--3599999999999998896341221332147767677898984385
Q gi|254780802|r 113 LQSIGLSIDWSKDFATCD--VDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQVINGR 176 (869)
Q Consensus 113 ~~~lG~~~DW~r~y~T~d--~~y~~~v~w~f~~L~~kGliyrg~~pV~wcp~~~t~la~~Ev~~g~ 176 (869)
++=||+-.| +--...| +.||+- -..||.+|.. ||+.|.|==--..+..|+
T Consensus 162 LdwLG~k~D--ev~y~Sdr~~~yYdY---------~~kLIe~G~A---Y~C~c~~Eefre~r~~G~ 213 (600)
T TIGR00463 162 LDWLGVKGD--EVVYQSDRIEIYYDY---------ARKLIEMGKA---YVCDCSPEEFRELRNKGV 213 (600)
T ss_pred HHHCCCCEE--EEEEEECCHHHHHHH---------HHHHHHCCCC---EECCCCCHHHHHHHCCCC
T ss_conf 875284200--689830530156899---------9999866983---432798446888633888
No 77
>cd00674 LysRS_core_class_I This is the catalytic core domain of lysyl tRNA synthetase (LysRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=97.71 E-value=0.00014 Score=49.31 Aligned_cols=48 Identities=25% Similarity=0.297 Sum_probs=40.3
Q ss_pred EEECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCC-CCCCCCCCC
Q ss_conf 6404742100000012222100123463356665530133-211111343
Q gi|254780802|r 623 VVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSP-PDRDIIWSN 671 (869)
Q Consensus 623 ~~~~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~~~~~~~-~~~d~~~s~ 671 (869)
+.+.+|+|||||+||+++++++++-+...+|||+++ ..| +...+.|+.
T Consensus 268 ~~~kgg~KmSsSkGn~it~~e~L~~~~pE~lr~l~~-~~p~~~k~i~fD~ 316 (354)
T cd00674 268 IGLKGGGKMSSSKGNVITPRDWLEVAPPESLRFLYA-RRKNPAKHIGFDL 316 (354)
T ss_pred EEECCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHH-HCCCCCCCCCCCC
T ss_conf 990699872246786128999997659999999986-0998553224675
No 78
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=97.66 E-value=0.00024 Score=47.72 Aligned_cols=96 Identities=18% Similarity=0.342 Sum_probs=65.7
Q ss_pred CCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 88389980778978987400477977899999977718985567688140205899999980999999999999999999
Q gi|254780802|r 33 KKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQ 112 (869)
Q Consensus 33 ~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~ 112 (869)
+..-++|==||-|||.||+|||..-.+-.-+|+- ..|+-.| =||-|- |..-..++++.++++
T Consensus 26 ~~gkVvtRFpPePnG~LHiGHaka~~lN~~~a~~--y~G~~~L---RfDDTN-------------P~~e~~e~~~~I~~d 87 (556)
T PRK05347 26 KHTKVHTRFPPEPNGYLHIGHAKSICLNFGLAQD--YGGKCNL---RFDDTN-------------PEKEDQEYVDSIKED 87 (556)
T ss_pred CCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEE---EECCCC-------------CCCCCHHHHHHHHHH
T ss_conf 7683998049899987618888999866999997--0998999---835899-------------874548999999999
Q ss_pred HHHCCCEEECCCC-EECCC--HHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 9981917664698-21477--3599999999999998896341
Q gi|254780802|r 113 LQSIGLSIDWSKD-FATCD--VDYYHCQQLLFLDFMKHNVIVR 152 (869)
Q Consensus 113 ~~~lG~~~DW~r~-y~T~d--~~y~~~v~w~f~~L~~kGliyr 152 (869)
++-||+. |... +.|.| ..|++. -.+|-++|+.|-
T Consensus 88 ~~wLg~~--~~~~i~~~Sd~f~~~y~~----a~~LI~~g~AYv 124 (556)
T PRK05347 88 VRWLGFD--WGGELRYASDYFDQLYEY----AVELIKKGKAYV 124 (556)
T ss_pred HHHCCCC--CCCEEEEEHHHHHHHHHH----HHHHHHCCCCEE
T ss_conf 9874998--898278813429999999----999986488135
No 79
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=97.61 E-value=9.7e-05 Score=50.45 Aligned_cols=92 Identities=18% Similarity=0.244 Sum_probs=60.4
Q ss_pred EEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 98077897898740047797789999997771898556768814020589999998099999999999999999999819
Q gi|254780802|r 38 VLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQLQSIG 117 (869)
Q Consensus 38 i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~~~~lG 117 (869)
++==.|.|||.||+||++|-..--.+||-+ .|.=+|+.==.| +.-...++.+.+.++++-||
T Consensus 6 v~RFAPSPTG~LHlG~~rtAl~n~l~Ar~~--~G~~iLRIEDtD----------------~~R~~~~~~~~Il~~L~wlG 67 (299)
T PRK05710 6 VGRFAPSPSGPLHFGSLVSALLSYLDARAQ--GGRWLVRIEDID----------------PPREVPGAAAAILADLEWLG 67 (299)
T ss_pred CEEECCCCCCCCCHHHHHHHHHHHHHHHHH--CCEEEEEECCCC----------------CCCCCHHHHHHHHHHHHHHC
T ss_conf 571796999853289999999999999982--998999867789----------------76587689999999999956
Q ss_pred CEEECCCC-EECCCHHHHHHHHHHHHHHHHCCCEE
Q ss_conf 17664698-21477359999999999999889634
Q gi|254780802|r 118 LSIDWSKD-FATCDVDYYHCQQLLFLDFMKHNVIV 151 (869)
Q Consensus 118 ~~~DW~r~-y~T~d~~y~~~v~w~f~~L~~kGliy 151 (869)
+. |+.+ +.-.+ ....=+..+.+|.++|++|
T Consensus 68 l~--wD~~~~~QS~--R~~~Y~~~~~~L~~~g~aY 98 (299)
T PRK05710 68 LH--WDGPVRRQSE--RHDAYRAALDRLAAAGLVY 98 (299)
T ss_pred CC--CCCCCHHHHH--HHHHHHHHHHHHHHCCCCE
T ss_conf 88--8874048885--8999999999999769902
No 80
>PRK12410 glutamyl-tRNA synthetase; Provisional
Probab=97.57 E-value=0.00028 Score=47.31 Aligned_cols=87 Identities=17% Similarity=0.235 Sum_probs=62.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 78978987400477977899999977718985567688140205899999980999999999999999999998191766
Q gi|254780802|r 42 FPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQLQSIGLSID 121 (869)
Q Consensus 42 pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~~~~lG~~~D 121 (869)
-|-|||.||+||++|-..-=.+||= ..|.=+|+.=-.| ..-.+..+.+.+.++++-+|+ +
T Consensus 5 APSPTG~lHiG~~rtAl~n~l~Ar~--~~G~fiLRIEDtD----------------~~R~~~~~~~~i~~~L~wlGl--~ 64 (433)
T PRK12410 5 APSPTGDMHIGNLRAAIFNYIVAKQ--QNEDFIIRIEDTD----------------KERNIEGKDKEILEILNLFGI--S 64 (433)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEECCCC----------------CCCCCHHHHHHHHHHHHHCCC--C
T ss_conf 9797996427899999999999985--5998999878789----------------998986999999999998599--9
Q ss_pred CCCCEECCC--HHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 469821477--3599999999999998896341
Q gi|254780802|r 122 WSKDFATCD--VDYYHCQQLLFLDFMKHNVIVR 152 (869)
Q Consensus 122 W~r~y~T~d--~~y~~~v~w~f~~L~~kGliyr 152 (869)
|+.+|.-.+ ..|. ....+|.++|.+|+
T Consensus 65 wDe~~~QS~R~~~Y~----~~~~~L~~~g~aY~ 93 (433)
T PRK12410 65 WDKLVYQSENLKFHR----QMAEKLLSEKKAFA 93 (433)
T ss_pred CCCCEECCCCHHHHH----HHHHHHHHCCCEEE
T ss_conf 998831257899999----99999998099689
No 81
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=97.56 E-value=0.00057 Score=45.16 Aligned_cols=89 Identities=20% Similarity=0.220 Sum_probs=66.2
Q ss_pred EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCC--------CCHHHHHHHHHH-C----------
Q ss_conf 89980778978987400477977899999977718-985567688140--------205899999980-9----------
Q gi|254780802|r 36 YFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRAS-GYSVLHPMGWDA--------FGMPAENAAREH-N---------- 95 (869)
Q Consensus 36 f~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~-G~~Vl~~~G~d~--------~GlPie~~~~e~-~---------- 95 (869)
.++...==-|||.+|||+.+--+..|+++|=.|-+ |+.|.+...||- .++|-....+++ +
T Consensus 30 ~vv~~tG~~pSG~~HiG~~~Ev~~~~~V~~al~~~~g~~~~~i~~~Dd~D~lRkvp~~~p~~e~~~~~lg~Pl~~iPdP~ 109 (513)
T PRK00750 30 EVLFETGYGPSGLPHIGTFGEVARTTMVRRALRDLTGIKTRLIYFSDDMDGLRKVPDNVPNQEMLAEHLGKPLTSVPDPF 109 (513)
T ss_pred EEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCC
T ss_conf 39993686899886230452266699999999984599668999851776543468899984999987499664079988
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCEEECCC
Q ss_conf 99999999999999999998191766469
Q gi|254780802|r 96 VHPKMWTYQNIKVMRKQLQSIGLSIDWSK 124 (869)
Q Consensus 96 ~~~~~~~~~~i~~~k~~~~~lG~~~DW~r 124 (869)
-.+..|++++...+.+.+.++|+-.++-+
T Consensus 110 g~~~Sya~h~~~~~~~~l~~~gi~~e~~s 138 (513)
T PRK00750 110 GTHESYAEHNNARLREFLDKFGFEYEFIS 138 (513)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 87576999999999999998398339976
No 82
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=97.48 E-value=0.00039 Score=46.33 Aligned_cols=89 Identities=18% Similarity=0.184 Sum_probs=61.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 78978987400477977899999977718985567688140205899999980999999999999999999998191766
Q gi|254780802|r 42 FPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQLQSIGLSID 121 (869)
Q Consensus 42 pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~~~~lG~~~D 121 (869)
-|-|||.||+||+||-..--.+||- ..|.=+|+.=-.| ..-.+..+.+.+.++++-+|+ |
T Consensus 8 APSPTG~lHiG~~rtAl~n~l~Ar~--~~G~fiLRIEDtD----------------~~R~~~~~~~~i~~~L~WlGl--~ 67 (461)
T PRK12558 8 APSPTGYIHIGNARTALFNWLFARA--HGGKFILRYDDTD----------------VERSKQEYADAIADDLRWLGL--D 67 (461)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEECCCC----------------CCCCCHHHHHHHHHHHHHCCC--C
T ss_conf 9898985327899999999999996--1998999877689----------------876887999999999998799--9
Q ss_pred CCCCEECCCHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 4698214773599999999999998896341
Q gi|254780802|r 122 WSKDFATCDVDYYHCQQLLFLDFMKHNVIVR 152 (869)
Q Consensus 122 W~r~y~T~d~~y~~~v~w~f~~L~~kGliyr 152 (869)
|+-+|.-..- ...=+....+|.++|+.|+
T Consensus 68 wDe~~~QS~r--~~~Y~~~~~~L~~~g~aY~ 96 (461)
T PRK12558 68 PDRVEYQSKR--FDRYAEAAEKLKAAGLLYA 96 (461)
T ss_pred CCCCCHHHCC--HHHHHHHHHHHHHCCCCEE
T ss_conf 9987416439--9999999999998699365
No 83
>TIGR00435 cysS cysteinyl-tRNA synthetase; InterPro: IPR002308 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=97.15 E-value=0.00011 Score=50.02 Aligned_cols=109 Identities=19% Similarity=0.208 Sum_probs=64.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHH-HCCCCCCCCCCC-CC---CCHH------HHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 789789874004779778999999777-189855676881-40---2058------999999809999999999999999
Q gi|254780802|r 42 FPYPSGNIHMGHLRNYVIGDVVARFMR-ASGYSVLHPMGW-DA---FGMP------AENAAREHNVHPKMWTYQNIKVMR 110 (869)
Q Consensus 42 pPy~nG~lHiGH~~~~t~~Dv~aRy~r-m~G~~Vl~~~G~-d~---~GlP------ie~~~~e~~~~~~~~~~~~i~~~k 110 (869)
=|++=...|||||||++.=|++.||.| ..||.|-|+.=+ |. +|== |-..|.+++.......+..
T Consensus 29 GpTVYd~~HiGhaR~~i~fD~~~R~L~d~~GY~V~yV~NiTDIGhltGdlddGDDKIIk~A~~~~~~~~~~kend----- 103 (660)
T TIGR00435 29 GPTVYDYAHIGHARTAIVFDVLRRYLEDYLGYEVQYVQNITDIGHLTGDLDDGDDKIIKRAREEGETVEEVKEND----- 103 (660)
T ss_pred CCHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHCC-----
T ss_conf 731762103034663025788899998875886788864312000016777750489999875156478874012-----
Q ss_pred HHHHHCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCHHHH
Q ss_conf 99998191766469821477359999999999999889634122133214776767789898
Q gi|254780802|r 111 KQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQV 172 (869)
Q Consensus 111 ~~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~pV~wcp~~~t~la~~Ev 172 (869)
..|. ..-..-|.-++-+--.|....+|...- =--..+|=||+++.
T Consensus 104 -------------tkfn---atvvdkvktalfqyinknftiqGseik-tieefetWlsnadt 148 (660)
T TIGR00435 104 -------------TKFN---ATVVDKVKTALFQYINKNFTIQGSEIK-TIEEFETWLSNADT 148 (660)
T ss_pred -------------CHHH---HHHHHHHHHHHHHHHHHCCEECCCHHH-HHHHHHHHHHCCCC
T ss_conf -------------2000---256778899999987520011252000-36777776520331
No 84
>pfam00750 tRNA-synt_1d tRNA synthetases class I (R). Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only arginyl tRNA synthetase.
Probab=97.10 E-value=0.00018 Score=48.67 Aligned_cols=46 Identities=30% Similarity=0.343 Sum_probs=36.9
Q ss_pred EECCCCCCHHHCCCCCCCCCCCCC--------------------------CCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 404742100000012222100123--------------------------46335666553013321111134
Q gi|254780802|r 624 VIGPLEKMSKSKKNVIDPMKVIKS--------------------------YGADTARLFVLSDSPPDRDIIWS 670 (869)
Q Consensus 624 ~~~~g~KMSKSkGNvi~p~~~i~~--------------------------yGaD~lRl~~~~~~~~~~d~~~s 670 (869)
+..+|+|||+.+||+|++++++++ -|.+|+||++++ ..+.+++.|+
T Consensus 273 ~~~dgkkMStR~G~~v~l~dLl~ea~~~a~~~~~~~~~~~~~~~~~ia~~Vgi~Airy~~L~-~~~~k~i~FD 344 (345)
T pfam00750 273 LGKDGKRMSTRAGNVVTLDDLLDEALERAMDIKEKNRDLTADELEAVATAIGVDAARYADLS-SNRDTDYIFD 344 (345)
T ss_pred ECCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCCCC
T ss_conf 76899616778877578999999999999999973668987789999987707676599986-5889898358
No 85
>cd00802 class_I_aaRS_core Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.06 E-value=0.00026 Score=47.52 Aligned_cols=63 Identities=21% Similarity=0.354 Sum_probs=38.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 23456664333223355565441013566411433440145554433202345553201347873223200222235532
Q gi|254780802|r 503 TMDTFVDSSWYYMRYMTPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIGYIEIDEPFKRLFTQGMV 582 (869)
Q Consensus 503 vld~w~dS~~~~~~~~~~~~~~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~g~~~~~~pf~~l~~~G~v 582 (869)
.+..|+|+++.++..... ..+|+|+++.|.||.. |..+.+.....+.. ..|+..++.+|++
T Consensus 71 ~~~y~~~~~~~~~~~~~~------------~~~~~~~~~~G~D~~~-~~~~~~~~~~~l~~------~~~~~~~~~~~~l 131 (142)
T cd00802 71 DLKYWFDSAADDLLLLGY------------PFYPVDLVLGGKDQIP-HLELTRDLLKALGG------KFPPPEVLHHGLL 131 (142)
T ss_pred HCEECCCEEECHHHHCCC------------CCCCCCEEEECCCCCC-CCHHHHHHHHHHCC------CCCCCCEEEEEEE
T ss_conf 652634016434875466------------7887657886621014-76999999998377------8899867863114
Q ss_pred CC
Q ss_conf 32
Q gi|254780802|r 583 VH 584 (869)
Q Consensus 583 ~~ 584 (869)
.+
T Consensus 132 ~~ 133 (142)
T cd00802 132 LG 133 (142)
T ss_pred EC
T ss_conf 88
No 86
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=96.86 E-value=0.0039 Score=39.48 Aligned_cols=89 Identities=19% Similarity=0.295 Sum_probs=61.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 78978987400477977899999977718985567688140205899999980999999999999999999998191766
Q gi|254780802|r 42 FPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQLQSIGLSID 121 (869)
Q Consensus 42 pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~~~~lG~~~D 121 (869)
-|-|||.||+|++||-..-=.+|| ...|.=+|+.=-.|. .-.+..+.+.+.+.++-+|+ +
T Consensus 8 APSPtG~lH~G~~rtal~n~l~a~--~~~g~f~lRieDtD~----------------~R~~~~~~~~i~~~l~wlgi--~ 67 (467)
T PRK01406 8 APSPTGYLHVGGARTALFNWLFAR--HHGGKFILRIEDTDL----------------ERSTPEAVDAILDGLKWLGL--D 67 (467)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHH--HHCCEEEEEECCCCC----------------CCCCHHHHHHHHHHHHHCCC--C
T ss_conf 899998422478999999999999--729969999687998----------------87877999999999998799--9
Q ss_pred CCC-CEECCCHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 469-8214773599999999999998896341
Q gi|254780802|r 122 WSK-DFATCDVDYYHCQQLLFLDFMKHNVIVR 152 (869)
Q Consensus 122 W~r-~y~T~d~~y~~~v~w~f~~L~~kGliyr 152 (869)
|+- +|.-.+.- ..=+-...+|.++|++|+
T Consensus 68 ~de~p~~QS~r~--~~y~~~~~~L~~~g~aY~ 97 (467)
T PRK01406 68 WDEGPYRQSERF--DRYKEVAEQLLEKGKAYY 97 (467)
T ss_pred CCCCCEEHHCCH--HHHHHHHHHHHHCCCCEE
T ss_conf 998886174489--999999999998499864
No 87
>cd00808 GluRS_core Descriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The descriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer, that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=96.77 E-value=0.0011 Score=43.26 Aligned_cols=63 Identities=19% Similarity=0.301 Sum_probs=45.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEE
Q ss_conf 77897898740047797789999997771898556768814020589999998099999999999999999999819176
Q gi|254780802|r 41 MFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQLQSIGLSI 120 (869)
Q Consensus 41 ~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~~~~lG~~~ 120 (869)
=+|-|||.||+||+++-.+--.+||- ..|.-+|+.==. ++..-..++++.++++++-||+..
T Consensus 6 FAPsPtG~LHiG~~rtal~n~l~Ar~--~~G~f~LRieDt----------------D~~R~~~e~~~~I~~dL~wLGl~w 67 (239)
T cd00808 6 FAPSPTGYLHIGGARTALFNYLFAKK--HGGKFILRIEDT----------------DQERSVEEAEEAILEDLKWLGIDW 67 (239)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHH--HCCEEEEEECCC----------------CCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 08898985338999999999999998--199899984568----------------988787699999999999818887
Q ss_pred E
Q ss_conf 6
Q gi|254780802|r 121 D 121 (869)
Q Consensus 121 D 121 (869)
|
T Consensus 68 D 68 (239)
T cd00808 68 D 68 (239)
T ss_pred C
T ss_conf 7
No 88
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=96.77 E-value=0.0064 Score=37.95 Aligned_cols=89 Identities=21% Similarity=0.335 Sum_probs=68.1
Q ss_pred CCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC--------HHHHHHHHHH-----------
Q ss_conf 838998077897898740047797789999997771898556768814020--------5899999980-----------
Q gi|254780802|r 34 KKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFG--------MPAENAAREH----------- 94 (869)
Q Consensus 34 ~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~G--------lPie~~~~e~----------- 94 (869)
+++.|-. =-.|||.+|||.++--...|+++|-.|-+|+.|.+..=||-.- +|-....+++
T Consensus 19 ~~~~v~t-GisPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP 97 (521)
T COG1384 19 DEYVVAT-GISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDP 97 (521)
T ss_pred CCEEEEC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCC
T ss_conf 8689834-768988732142898989999999999748865799981487510127999998689998709964348997
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCEEECC
Q ss_conf 99999999999999999999819176646
Q gi|254780802|r 95 NVHPKMWTYQNIKVMRKQLQSIGLSIDWS 123 (869)
Q Consensus 95 ~~~~~~~~~~~i~~~k~~~~~lG~~~DW~ 123 (869)
.-.|..|++.+...+.+.+.++|+-..+-
T Consensus 98 ~G~~~Sya~hf~~~f~~~l~~~Gi~~E~~ 126 (521)
T COG1384 98 FGCCDSYAEHFLRPFEEFLDEFGIEVEFV 126 (521)
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 66533599999999999998649864998
No 89
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=96.68 E-value=0.0063 Score=38.00 Aligned_cols=29 Identities=24% Similarity=0.155 Sum_probs=20.5
Q ss_pred CCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 4742100000012222100123463356665530
Q gi|254780802|r 626 GPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLS 659 (869)
Q Consensus 626 ~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~~~~ 659 (869)
.+|+|||||.||+|++.+ ..+.+|=-++.
T Consensus 198 lDGrKMSKSy~NtI~Lf~-----~~k~l~K~I~~ 226 (436)
T PRK12284 198 LDGRKMSKSYDNTIPLFS-----PREELKKAIFR 226 (436)
T ss_pred CCCCCCCCCCCCCCCCCC-----CHHHHHHHHHC
T ss_conf 998705578898064878-----96999998505
No 90
>TIGR00440 glnS glutaminyl-tRNA synthetase; InterPro: IPR004514 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Glutaminyl-tRNA synthetase (6.1.1.18 from EC) is a class Ic synthetase and shows several similarities with glutamyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. Glutaminyl-tRNA synthetase is a relatively rare synthetase, found in the cytosolic compartment of eukaryotes, in Escherichia coli and a number of other Gram-negative bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln.; GO: 0000166 nucleotide binding, 0004819 glutamine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006425 glutaminyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=96.47 E-value=0.0033 Score=39.90 Aligned_cols=106 Identities=18% Similarity=0.336 Sum_probs=64.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEE
Q ss_conf 77897898740047797789999997771898556768814020589999998099999999999999999999819176
Q gi|254780802|r 41 MFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQLQSIGLSI 120 (869)
Q Consensus 41 ~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~~~~lG~~~ 120 (869)
=||=|||-|||||+-+..+-==+|+++ +|..-| =||- ..|..-+-++++.+|++..=||+-.
T Consensus 5 FPPEPNGYLHIGHaK~I~~NFG~Ak~y--~G~C~L---RFDD-------------TNP~KE~~EY~eSIK~~V~WLGFkw 66 (564)
T TIGR00440 5 FPPEPNGYLHIGHAKSICLNFGLAKEY--KGTCNL---RFDD-------------TNPVKEDVEYVESIKRDVEWLGFKW 66 (564)
T ss_pred CCCCCCCCEEHHHHHHHHHHCCCCCCC--CCCEEE---ECCC-------------CCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 885578730010243134420320201--763644---2167-------------8886466017888752222225124
Q ss_pred ECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCHHHHHCCCCCC
Q ss_conf 64698214773599999999999998896341221332147767677898984385334
Q gi|254780802|r 121 DWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQVINGRGWR 179 (869)
Q Consensus 121 DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~pV~wcp~~~t~la~~Ev~~g~~~~ 179 (869)
.|.-.|.. +|....-..=..|-++|+.| |--| +-.|+..++|..
T Consensus 67 ~g~~~YsS---DYFD~Ly~~A~~LI~~G~AY-----V~~~-------t~e~i~~~RG~~ 110 (564)
T TIGR00440 67 EGKIRYSS---DYFDELYRYAVELIKKGLAY-----VDEL-------TPEEIREYRGTL 110 (564)
T ss_pred CCCEEECH---HHHHHHHHHHHHHHHCCCEE-----EECC-------CHHHHHHCCCCC
T ss_conf 77313330---46889999999998679606-----7537-------878986327602
No 91
>cd02156 nt_trans nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=96.39 E-value=0.0013 Score=42.79 Aligned_cols=73 Identities=25% Similarity=0.405 Sum_probs=60.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEE
Q ss_conf 77897898740047797789999997771898556768814020589999998099999999999999999999819176
Q gi|254780802|r 41 MFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQLQSIGLSI 120 (869)
Q Consensus 41 ~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~~~~lG~~~ 120 (869)
..|+++|++|+||.+.....+.++| +++.+...+++++.|...... .+.....+.++.++..++.+|+..
T Consensus 2 ~~~g~fd~~H~GH~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~r~~~~~~~~~~~~~~~ 71 (147)
T cd02156 2 LAPGPFDPLHLGHLRLIERADELAR------YGGDELIVIDDTDPPIKKLKG----KPLESLEERLEMLREALKDLGVVL 71 (147)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHH------HCCCCEEEEECCCCCHHHCCC----CCCCCHHHHHHHHHHHCCCEEEEE
T ss_conf 8986048767899999999999999------769928999789991453378----767689999999998288814998
Q ss_pred ECC
Q ss_conf 646
Q gi|254780802|r 121 DWS 123 (869)
Q Consensus 121 DW~ 123 (869)
||.
T Consensus 72 ~~~ 74 (147)
T cd02156 72 DFD 74 (147)
T ss_pred ECC
T ss_conf 577
No 92
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=96.35 E-value=0.079 Score=30.49 Aligned_cols=27 Identities=33% Similarity=0.241 Sum_probs=18.5
Q ss_pred CCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 47421000000122221001234633566655
Q gi|254780802|r 626 GPLEKMSKSKKNVIDPMKVIKSYGADTARLFV 657 (869)
Q Consensus 626 ~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~~ 657 (869)
.+|+|||||.+|.|.+.+- .|.+|--+
T Consensus 197 ldgkKMSKS~~n~I~L~D~-----~d~I~kKI 223 (328)
T PRK12556 197 LDGRKMSKSYGNVIPLFAE-----QEKLRKLI 223 (328)
T ss_pred CCCCCCCCCCCCCCCCCCC-----HHHHHHHH
T ss_conf 9987655687881347689-----99999999
No 93
>TIGR00392 ileS isoleucyl-tRNA synthetase; InterPro: IPR002301 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Isoleucyl-tRNA synthetase (6.1.1.5 from EC) is an alpha monomer that belongs to class Ia. The enzyme, isoleucyl-transfer RNA synthetase, activates not only the cognate substrate L-isoleucine but also the minimally distinct L-valine in the first, aminoacylation step. Then, in a second, "editing" step, the synthetase itself rapidly hydrolyzes only the valylated products , as shown from the crystal structures. ; GO: 0000166 nucleotide binding, 0004822 isoleucine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006428 isoleucyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=96.34 E-value=0.0055 Score=38.42 Aligned_cols=53 Identities=11% Similarity=0.166 Sum_probs=36.4
Q ss_pred HHHHHHHCCCEEECCC-CEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEE---CCC
Q ss_conf 9999998191766469-8214773599999999999998896341221332---147
Q gi|254780802|r 109 MRKQLQSIGLSIDWSK-DFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVN---WDP 161 (869)
Q Consensus 109 ~k~~~~~lG~~~DW~r-~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~pV~---wcp 161 (869)
.+++.+.=+--+=.+- ||.|-.+.+=.+.-.+++.+.-+=-..+|+++.+ |++
T Consensus 28 ~~~~~~~~~~F~lhDGPPYAnG~iHlGHalNKilKDii~Ryk~m~G~~v~~~pGWDt 84 (938)
T TIGR00392 28 VKKRNKDKPEFVLHDGPPYANGAIHLGHALNKILKDIILRYKTMQGYNVTYKPGWDT 84 (938)
T ss_pred HHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCC
T ss_conf 998508998358744858767997402556667611232101122500320478665
No 94
>PRK00574 gltX glutamyl-tRNA synthetase; Reviewed
Probab=96.34 E-value=0.014 Score=35.63 Aligned_cols=90 Identities=16% Similarity=0.194 Sum_probs=63.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 78978987400477977899999977718985567688140205899999980999999999999999999998191766
Q gi|254780802|r 42 FPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQLQSIGLSID 121 (869)
Q Consensus 42 pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~~~~lG~~~D 121 (869)
-|-|||.||+|.+||-..-=.+||=+ .|.=+|+.=-.|. .-.+.++++.+.+.|+-+|+-.|
T Consensus 10 APSPTG~lHiG~~rtAl~n~l~Ar~~--~G~fiLRIEDTD~----------------~R~~~~~~~~I~~~L~wlgl~~D 71 (489)
T PRK00574 10 APSPTGYLHIGNARTALFNYLFAKHN--NGKFILRIEDTDQ----------------ERNVEGGEESQLENLKWLGIDWD 71 (489)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEECCCCC----------------CCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 98999842247899999999999964--9989998677898----------------77876999999999998798887
Q ss_pred CC-------CCEECCC--HHHHHHHHHHHHHHHHCCCEEEC
Q ss_conf 46-------9821477--35999999999999988963412
Q gi|254780802|r 122 WS-------KDFATCD--VDYYHCQQLLFLDFMKHNVIVRK 153 (869)
Q Consensus 122 W~-------r~y~T~d--~~y~~~v~w~f~~L~~kGliyrg 153 (869)
=. -||.-.. ..|.+ ...+|.++|..|+-
T Consensus 72 E~p~~~g~~gPY~QS~R~~~Y~~----~a~~Ll~~G~AY~C 108 (489)
T PRK00574 72 EGPDKGGEYGPYRQSERLDIYQK----YADQLLEEGKAYYC 108 (489)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHH----HHHHHHHCCCCEEC
T ss_conf 78777888888351268999999----99999974997452
No 95
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Probab=96.08 E-value=0.11 Score=29.59 Aligned_cols=101 Identities=15% Similarity=0.186 Sum_probs=67.3
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH----HH----HHHHHHHHHHHCCCC--------CCCCHHHHHHHHH
Q ss_conf 2346335666553013321111134321011455----67----788999997630246--------6789756999999
Q gi|254780802|r 646 KSYGADTARLFVLSDSPPDRDIIWSNKGVDSTYQ----FI----QQIWRLIYNAKDELQ--------TSSTKKDISLISK 709 (869)
Q Consensus 646 ~~yGaD~lRl~~~~~~~~~~d~~~s~~~i~~~~r----fl----~kl~~l~~~~~~~~~--------~~~~~~D~~ils~ 709 (869)
++=|.|++|+++++ .....++.|+.+.+..... ++ -|+-+++..+..... ....+.++.++..
T Consensus 1 e~Ig~~Airy~~L~-~~~~~~~~FD~d~~~~~~gnt~~YiQYa~aR~~SIl~k~~~~~~~~~~~~~~~l~~~~e~~Li~~ 79 (156)
T cd07956 1 EEVGVGAVKYQDLS-NKRIKDYTFDWERMLSFEGDTGPYLQYAHARLCSILRKAGETIEAEADADLSLLPEPDERDLILL 79 (156)
T ss_pred CCCCHHHHHHHHHH-CCCCCCCEECHHHHHCCCCCCCEEHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCHHHHHHHHH
T ss_conf 96423578889986-38999845529998623689851124899999999997245453322254200499899999999
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999881688999999999999999999862
Q gi|254780802|r 710 STKFLERIEENYQNLSFNKAVANIHELVNVISKPLMEI 747 (869)
Q Consensus 710 ~~~~i~~v~~~~e~~~f~~ai~~i~~f~n~ls~~y~~~ 747 (869)
+.+.-.-+.++.++++-+..+.-++++...|+++|-..
T Consensus 80 l~~fp~vl~~a~~~~~P~~l~~YL~~La~~F~~fY~~~ 117 (156)
T cd07956 80 LAKFPEVVKNAAETLEPHTIATYLFDLAHAFSKFYNAC 117 (156)
T ss_pred HHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 96572899999997070699999999999999999749
No 96
>KOG4426 consensus
Probab=95.96 E-value=0.12 Score=29.21 Aligned_cols=46 Identities=15% Similarity=0.122 Sum_probs=29.9
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 699999-9999999999998816889999999999999999998621
Q gi|254780802|r 703 DISLIS-KSTKFLERIEENYQNLSFNKAVANIHELVNVISKPLMEIA 748 (869)
Q Consensus 703 D~~ils-~~~~~i~~v~~~~e~~~f~~ai~~i~~f~n~ls~~y~~~~ 748 (869)
+.|-+. .+-++..-+.++.++.-.+.-+.-+|++...|..+|....
T Consensus 567 ~E~kLg~~lLkf~e~v~~~~~~L~lh~lC~y~y~l~t~Ft~FY~~Cy 613 (656)
T KOG4426 567 KEWKLGKHLLKFAEIVEKALDSLFLHVLCDYLYELATLFTEFYDSCY 613 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCE
T ss_conf 78899999985899999999988799999999999999999851207
No 97
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=95.88 E-value=0.13 Score=29.00 Aligned_cols=28 Identities=29% Similarity=0.194 Sum_probs=20.1
Q ss_pred CCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 742100000012222100123463356665530
Q gi|254780802|r 627 PLEKMSKSKKNVIDPMKVIKSYGADTARLFVLS 659 (869)
Q Consensus 627 ~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~~~~ 659 (869)
+|+|||||.+|.|.+.+ ..|.+|=-++.
T Consensus 261 DGkKMSKS~~n~I~L~D-----~~~~I~KKI~k 288 (398)
T PRK12283 261 DGQKMSKSYGNTIGLRE-----DPETVTKKIRT 288 (398)
T ss_pred CCCCCCCCCCCEEECCC-----CHHHHHHHHHH
T ss_conf 98645799999755528-----99999999974
No 98
>KOG1147 consensus
Probab=95.82 E-value=0.069 Score=30.89 Aligned_cols=109 Identities=19% Similarity=0.267 Sum_probs=72.0
Q ss_pred EEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 99807789789874004779778999999777189855676881402058999999809999999999999999999981
Q gi|254780802|r 37 FVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQLQSI 116 (869)
Q Consensus 37 ~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~~~~l 116 (869)
+++-=||=|||-||||||..-.+--.+| ++-+|+ -.+-||-| .|..-.++|.+.+.+++.-|
T Consensus 201 Vv~RFPPEpSGyLHIGHAKAALLNqYfa--~~~~G~---LIvRFDDT-------------NPaKE~~eFe~~IleDl~~L 262 (712)
T KOG1147 201 VVTRFPPEPSGYLHIGHAKAALLNQYFA--QAYQGK---LIVRFDDT-------------NPAKENEEFEDVILEDLSLL 262 (712)
T ss_pred EEEECCCCCCCEEEHHHHHHHHHHHHHH--HHCCCE---EEEEECCC-------------CCCHHHHHHHHHHHHHHHHH
T ss_conf 5785698977602411679999999999--852862---99982699-------------92021678999998778870
Q ss_pred CCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCHHHHHCC
Q ss_conf 91766469821477359999999999999889634122133214776767789898438
Q gi|254780802|r 117 GLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQVING 175 (869)
Q Consensus 117 G~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~pV~wcp~~~t~la~~Ev~~g 175 (869)
|+--| -.|..-+|..-+.---.+|.+.|..|-...|. --.-+|+++|
T Consensus 263 gIkpd----~~TyTSDyF~~i~dycv~likeGKAYvDDTp~--------E~Mr~ER~~g 309 (712)
T KOG1147 263 GIKPD----RVTYTSDYFDEIMDYCVKLIKEGKAYVDDTPT--------EQMRDEREQG 309 (712)
T ss_pred CCCCC----EEEECHHHHHHHHHHHHHHHHCCCCCCCCCCH--------HHHHHHHHCC
T ss_conf 85764----44531355999999999998637431369968--------9999887605
No 99
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=95.61 E-value=0.16 Score=28.30 Aligned_cols=25 Identities=44% Similarity=0.355 Sum_probs=17.0
Q ss_pred CCCHHHCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 210000001222210012346335666553
Q gi|254780802|r 629 EKMSKSKKNVIDPMKVIKSYGADTARLFVL 658 (869)
Q Consensus 629 ~KMSKSkGNvi~p~~~i~~yGaD~lRl~~~ 658 (869)
.|||||.||.|.+.| ..|.+|-=+.
T Consensus 195 ~KMSKS~~n~I~L~D-----~~~~I~kKI~ 219 (333)
T PRK12282 195 AKMSKSLGNAIYLSD-----SADTIKKKVM 219 (333)
T ss_pred CCCCCCCCCCEECCC-----CHHHHHHHHH
T ss_conf 010599999621448-----9999999988
No 100
>KOG1148 consensus
Probab=95.50 E-value=0.083 Score=30.35 Aligned_cols=96 Identities=21% Similarity=0.301 Sum_probs=46.7
Q ss_pred EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 89980778978987400477977899999977718985567688140205899999980999999999999999999998
Q gi|254780802|r 36 YFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQLQS 115 (869)
Q Consensus 36 f~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~~~~ 115 (869)
-+.|-=||=|||-||||||-..-+-==+|++ +.|..-| -||-| .|..-.+++...+++...=
T Consensus 248 kV~TRFPPEPNG~LHIGHaKAInvNFgyAk~--~~G~cyL---RfDDT-------------NPEkEee~yf~sI~e~V~W 309 (764)
T KOG1148 248 KVVTRFPPEPNGILHIGHAKAINVNFGYAKA--HGGVCYL---RFDDT-------------NPEKEEEEYFESIKEMVAW 309 (764)
T ss_pred EEEEECCCCCCCEEEECCHHHEEECHHHHHH--HCCEEEE---ECCCC-------------CCCHHHHHHHHHHHHHHHH
T ss_conf 6677179898856563213430101244665--0976899---62789-------------8203368999999999987
Q ss_pred CCCEEECCCCEECCCHHHHHHHHHHHHHHHHCC--CEEECCEEEECC
Q ss_conf 191766469821477359999999999999889--634122133214
Q gi|254780802|r 116 IGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHN--VIVRKTAQVNWD 160 (869)
Q Consensus 116 lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kG--liyrg~~pV~wc 160 (869)
||+ .---.|..-+| |.+||+.+ ||.||...|-.|
T Consensus 310 LG~----~P~kvTysSDy-------FdqLy~~av~LIrkG~AYVcHq 345 (764)
T KOG1148 310 LGF----EPYKVTYSSDY-------FDQLYELAVELIRKGKAYVCHQ 345 (764)
T ss_pred HCC----CCEEEECCHHH-------HHHHHHHHHHHHHCCCEEEEEC
T ss_conf 187----85044124167-------9999999999986686467735
No 101
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.38 E-value=0.016 Score=35.23 Aligned_cols=45 Identities=16% Similarity=0.320 Sum_probs=35.2
Q ss_pred HHHCCCCHHHHHHHHHHHHHHH-----------CCCCCCHHHHHHHHHCC-CCCCCC
Q ss_conf 0001356466548889999740-----------46775202221110001-112211
Q gi|254780802|r 392 SFLDGMTNTEALQAVMSHLEKQ-----------NIKNSPIGKRKINFRLR-DWCISR 436 (869)
Q Consensus 392 ~~~~g~~~~~~~~~i~~~l~~~-----------~~~~~~~~~~~~~~~l~-DW~ISR 436 (869)
..+.|+.+.+|-+.|++.|.+. .++++|+.+..+.||.. .|+||-
T Consensus 366 ~~~~G~~v~dAn~~Ii~~Lk~~g~Ll~~e~i~HsYPhcWR~ktPlIyRAt~QWFi~v 422 (933)
T COG0060 366 PKYEGLFVKDANKKIIEDLKEKGNLLKSEKIEHSYPHCWRTKTPLIYRATPQWFVSV 422 (933)
T ss_pred HHHCCCEECCCCHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCEEEEEECCHHEEEH
T ss_conf 321782400078999999986795315335775798666789806985052033678
No 102
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=94.48 E-value=0.034 Score=32.98 Aligned_cols=19 Identities=21% Similarity=0.312 Sum_probs=15.9
Q ss_pred CCCCCCCEEECCCHHHCCC
Q ss_conf 2358700130620221025
Q gi|254780802|r 589 QLEGIKKKYLKPDEVILRN 607 (869)
Q Consensus 589 ~~~~~~~~~~~p~~~~~~~ 607 (869)
+||||.||.+.|.+++-..
T Consensus 594 KMSKS~GNvidP~~vi~~y 612 (1042)
T PRK06039 594 KMSKSLGNYVDPFEVFDKY 612 (1042)
T ss_pred ECCCCCCCCCCHHHHHHHC
T ss_conf 8033678868979998860
No 103
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=93.79 E-value=0.24 Score=27.14 Aligned_cols=17 Identities=35% Similarity=0.096 Sum_probs=12.8
Q ss_pred CCCCHHH-CCCCCCCCCC
Q ss_conf 4210000-0012222100
Q gi|254780802|r 628 LEKMSKS-KKNVIDPMKV 644 (869)
Q Consensus 628 g~KMSKS-kGNvi~p~~~ 644 (869)
..||||| .+|.|.+.|-
T Consensus 218 ~~KMSkS~~~~~I~l~D~ 235 (333)
T PRK08560 218 EIKMSKSKPGSAIFVHDS 235 (333)
T ss_pred CCCCCCCCCCCCEEECCC
T ss_conf 886788999994741589
No 104
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=93.43 E-value=0.034 Score=32.96 Aligned_cols=19 Identities=42% Similarity=0.076 Sum_probs=15.9
Q ss_pred ECCC-CCCHHHCCCCCCCCC
Q ss_conf 0474-210000001222210
Q gi|254780802|r 625 IGPL-EKMSKSKKNVIDPMK 643 (869)
Q Consensus 625 ~~~g-~KMSKSkGNvi~p~~ 643 (869)
..+| +|||||.||.|++++
T Consensus 224 ~~dG~~KmgKS~gnaIwLd~ 243 (405)
T PRK13354 224 GLDGTEKMSKSLGNYIGLDE 243 (405)
T ss_pred CCCCCCCCCCCCCCCEECCC
T ss_conf 88775532501278631479
No 105
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=93.40 E-value=0.53 Score=24.81 Aligned_cols=27 Identities=33% Similarity=0.379 Sum_probs=18.1
Q ss_pred CCCCCHHHCCC---CCCCCCCCCCCCHHHHHHHHH
Q ss_conf 74210000001---222210012346335666553
Q gi|254780802|r 627 PLEKMSKSKKN---VIDPMKVIKSYGADTARLFVL 658 (869)
Q Consensus 627 ~g~KMSKSkGN---vi~p~~~i~~yGaD~lRl~~~ 658 (869)
+++|||||.+| .|.+.+ ..|.+|--+.
T Consensus 189 ~~~KMSKS~~n~~s~I~l~d-----~~~~i~kKi~ 218 (325)
T PRK00927 189 PTKKMSKSDGNDNSTINLLD-----DPKTIAKKIK 218 (325)
T ss_pred CCCCCCCCCCCCCCEEECCC-----CHHHHHHHHH
T ss_conf 55101446799765565138-----9999999988
No 106
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=92.86 E-value=0.42 Score=25.54 Aligned_cols=78 Identities=18% Similarity=0.232 Sum_probs=41.8
Q ss_pred CCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH---HHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 88389980778978987400477977899999977718985567688140205---899999980999999999999999
Q gi|254780802|r 33 KKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGM---PAENAAREHNVHPKMWTYQNIKVM 109 (869)
Q Consensus 33 ~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~Gl---Pie~~~~e~~~~~~~~~~~~i~~~ 109 (869)
.++.-+..|+=-+..+||+||+.... ..|.....|++|.+..| +.||+ |-- ...+...-..+-+.++.+.+
T Consensus 35 ~~~l~vy~GfDPTa~sLHlGhlv~l~----~L~~fq~~Gh~~i~liG-g~T~~IGDPSg-k~~~R~~l~~e~i~~N~~~~ 108 (405)
T PRK13354 35 GKPLTLKLGLDPTAPDIHIGHLVVLR----KLKQFQDAGHRAVILIG-DFTGKIGDPTG-KSKERKLLTDEQVQHNADTY 108 (405)
T ss_pred CCCEEEEEEECCCCCCCHHHHHHHHH----HHHHHHHCCCCEEEEEC-CCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHH
T ss_conf 88438999546998852076499999----99999986994799967-86542569999-85456676799999999999
Q ss_pred HHHHHHC
Q ss_conf 9999981
Q gi|254780802|r 110 RKQLQSI 116 (869)
Q Consensus 110 k~~~~~l 116 (869)
++|+.++
T Consensus 109 ~~q~~~~ 115 (405)
T PRK13354 109 TEQIFKL 115 (405)
T ss_pred HHHHHHH
T ss_conf 9999986
No 107
>KOG1195 consensus
Probab=92.82 E-value=0.64 Score=24.25 Aligned_cols=109 Identities=17% Similarity=0.147 Sum_probs=66.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHH----HHHHH----HHHHHHHHHHCCCCCCC--------CHH
Q ss_conf 222100123463356665530133211111343210114----55677----88999997630246678--------975
Q gi|254780802|r 639 IDPMKVIKSYGADTARLFVLSDSPPDRDIIWSNKGVDST----YQFIQ----QIWRLIYNAKDELQTSS--------TKK 702 (869)
Q Consensus 639 i~p~~~i~~yGaD~lRl~~~~~~~~~~d~~~s~~~i~~~----~rfl~----kl~~l~~~~~~~~~~~~--------~~~ 702 (869)
-.|+++.+.-|+-|+.+-. +.+....+..|+++++-.. .-+|+ |+-.+.....+...+.. ..+
T Consensus 404 ~~~~~vad~lg~sAviv~d-~k~rr~s~yeF~w~~~~~~~gdtg~yLQY~HsRL~Slerk~~~~~~~~l~~~d~~~l~ep 482 (567)
T KOG1195 404 ANPDEVADRLGLSAVIVQD-FKGRRISNYEFSWNRVLSFEGDTGPYLQYTHSRLRSLERKFSDVTLDDLDEIDFSLLTEP 482 (567)
T ss_pred CCHHHHHHHHHHHHHHHHH-HHHHHCCCCEEEHHHHHEECCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHCCCH
T ss_conf 8878999887457787999-888750563677003002168844788887878999998625667044410216651773
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 6-999999999999999998816889999999999999999998621
Q gi|254780802|r 703 D-ISLISKSTKFLERIEENYQNLSFNKAVANIHELVNVISKPLMEIA 748 (869)
Q Consensus 703 D-~~ils~~~~~i~~v~~~~e~~~f~~ai~~i~~f~n~ls~~y~~~~ 748 (869)
+ ..++..+.++-+-+..++|.++-...+.-+..+++..|..|..+.
T Consensus 483 ~~~~Lv~~L~~fp~vve~s~e~lE~~~lV~YL~~La~a~s~~yk~l~ 529 (567)
T KOG1195 483 DALLLVRLLLQFPEVVEKSMEQLEPCTLVTYLFKLAHAVSSAYKILW 529 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEE
T ss_conf 69999999850089999999762434379999999999986776101
No 108
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=92.75 E-value=0.063 Score=31.16 Aligned_cols=46 Identities=28% Similarity=0.264 Sum_probs=19.4
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCC
Q ss_conf 110001112211232222234223334684634742000111001000224542
Q gi|254780802|r 425 INFRLRDWCISRQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNP 478 (869)
Q Consensus 425 ~~~~l~DW~ISRqr~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~ 478 (869)
+...|.+..+....|+....|+ +| +||... .+.++.|+||..++++
T Consensus 355 i~~~L~~~g~~~~~y~~~~~~v-~~-R~g~~~------v~~~~~dQWFi~~~~~ 400 (888)
T PRK12300 355 ITEDLIESGIAEIMYEFSEKPV-YC-RCGTEC------VVKVVKDQWFIDYSNP 400 (888)
T ss_pred HHHHHHHCCCCCEEECCCCCCC-CC-CCCCEE------EEECCCCCCCCCCCCH
T ss_conf 9999997799740303577886-78-999867------6341687641047876
No 109
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=92.61 E-value=0.11 Score=29.56 Aligned_cols=18 Identities=17% Similarity=0.447 Sum_probs=13.9
Q ss_pred CCCCCCCEEECCCHHHCC
Q ss_conf 235870013062022102
Q gi|254780802|r 589 QLEGIKKKYLKPDEVILR 606 (869)
Q Consensus 589 ~~~~~~~~~~~p~~~~~~ 606 (869)
+||||.||.+.|.+++-.
T Consensus 538 KMSKS~GNvi~p~eii~~ 555 (809)
T PRK13208 538 KMSKSKGNVVDPEELLEK 555 (809)
T ss_pred CCCCCCCCCCCHHHHHHH
T ss_conf 347778896897898653
No 110
>cd00805 TyrRS_core Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer, which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=92.48 E-value=0.056 Score=31.54 Aligned_cols=15 Identities=47% Similarity=0.171 Sum_probs=12.2
Q ss_pred CCCCCCHHHCCCCCC
Q ss_conf 474210000001222
Q gi|254780802|r 626 GPLEKMSKSKKNVID 640 (869)
Q Consensus 626 ~~g~KMSKSkGNvi~ 640 (869)
.+|+|||||.||.+.
T Consensus 190 ~dG~KMSKS~~N~i~ 204 (268)
T cd00805 190 LDGGKMSKSEGNAIW 204 (268)
T ss_pred CCCCCCCCCCCCCCC
T ss_conf 998744678999501
No 111
>cd00805 TyrRS_core Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer, which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=92.31 E-value=0.42 Score=25.50 Aligned_cols=76 Identities=25% Similarity=0.360 Sum_probs=40.8
Q ss_pred CCC-CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCC-CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 789-8740047797789999997771898556768-8140-205899999980999999999999999999998191766
Q gi|254780802|r 45 PSG-NIHMGHLRNYVIGDVVARFMRASGYSVLHPM-GWDA-FGMPAENAAREHNVHPKMWTYQNIKVMRKQLQSIGLSID 121 (869)
Q Consensus 45 ~nG-~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~-G~d~-~GlPie~~~~e~~~~~~~~~~~~i~~~k~~~~~lG~~~D 121 (869)
||| .||+||.+... + ..+.+ ..|+++.+-. +||. .|-|-... .+......+....+.+.+..++..+|.+.|
T Consensus 9 PTG~~lHLGhyv~~~-~--~~~~q-~~g~~~~~~IaD~hAli~dp~~~~-~~r~~~~~e~i~~~~~~~~~~~~~~~~~~~ 83 (268)
T cd00805 9 PTAPSLHLGHLVPLM-K--LRDFQ-QAGHEVIVLIGDATAMIGDPSGKS-EERKLLTEEEILENAKYIKKQIKAILKFIP 83 (268)
T ss_pred CCCCCCCHHHHHHHH-H--HHHHH-HCCCCEEEEEECCEEECCCCCCCC-HHHCCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 999972499999999-9--99998-789958999954201405897650-222146199999988738999988525899
Q ss_pred CCCC
Q ss_conf 4698
Q gi|254780802|r 122 WSKD 125 (869)
Q Consensus 122 W~r~ 125 (869)
=.+.
T Consensus 84 ~~~~ 87 (268)
T cd00805 84 PEKL 87 (268)
T ss_pred CCCE
T ss_conf 8746
No 112
>KOG0434 consensus
Probab=91.32 E-value=0.15 Score=28.62 Aligned_cols=102 Identities=24% Similarity=0.419 Sum_probs=69.7
Q ss_pred CCCCEECCCHHH------HHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCHHHH-----------------------
Q ss_conf 469821477359------999999999999889634122133214776767789898-----------------------
Q gi|254780802|r 122 WSKDFATCDVDY------YHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQV----------------------- 172 (869)
Q Consensus 122 W~r~y~T~d~~y------~~~v~w~f~~L~~kGliyrg~~pV~wcp~~~t~la~~Ev----------------------- 172 (869)
-...|.|.|..- -.|-.--|.-+..+|.|-++..|+ ||.+.+.+=-.||
T Consensus 309 l~d~yVt~~sGTGiVH~AP~FGe~Dy~~c~~~giI~~d~~~~--cpVDe~G~~Tsev~dfaG~YVKDaDK~Ii~~lk~~g 386 (1070)
T KOG0434 309 LSDDYVTEDSGTGIVHQAPAFGEEDYRACVANGIIRKDSLPP--CPVDESGLFTSEVTDFAGQYVKDADKLIIRSLKASG 386 (1070)
T ss_pred ECCCCEECCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHCC
T ss_conf 615727427886136507765705489999739513778788--861667763100542255242214399999998527
Q ss_pred ----------HCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC-CCCCC
Q ss_conf ----------438533456432233475233430344454432100225543222221-00014
Q gi|254780802|r 173 ----------INGRGWRSDAPVEQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIM-QKNWI 225 (869)
Q Consensus 173 ----------~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~l~~~p~~v~~~-~~~~i 225 (869)
.++.|||++.|...+..|.||.+.+..-+.++.-....-.-|..++.- -.||+
T Consensus 387 ~lv~~~~i~HsYPFCWRSDTPLiYraVPsWFVrVk~~v~~ll~nn~~t~WVP~~ikeKRF~NWL 450 (1070)
T KOG0434 387 RLVKASQITHSYPFCWRSDTPLIYRAVPSWFVRVKNIVDQLLRNNMKTHWVPQNIKEKRFANWL 450 (1070)
T ss_pred CEEEEEEEEECCCCEECCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf 4665565664467335589707876342765119977999985155443477055677888887
No 113
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=91.03 E-value=0.27 Score=26.79 Aligned_cols=18 Identities=17% Similarity=0.342 Sum_probs=11.4
Q ss_pred CCCCCCCEEECCCHHHCC
Q ss_conf 235870013062022102
Q gi|254780802|r 589 QLEGIKKKYLKPDEVILR 606 (869)
Q Consensus 589 ~~~~~~~~~~~p~~~~~~ 606 (869)
+||||.||.+.|.+++..
T Consensus 636 KMSKS~GNvvdP~~ii~~ 653 (966)
T PRK13804 636 KMSKSLGNVVDPQDVIKQ 653 (966)
T ss_pred CCCCCCCCCCCHHHHHHH
T ss_conf 887878898998999987
No 114
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=91.00 E-value=0.1 Score=29.67 Aligned_cols=17 Identities=41% Similarity=0.266 Sum_probs=13.1
Q ss_pred CC-CCCHHHCCC-CCCCCC
Q ss_conf 74-210000001-222210
Q gi|254780802|r 627 PL-EKMSKSKKN-VIDPMK 643 (869)
Q Consensus 627 ~g-~KMSKSkGN-vi~p~~ 643 (869)
.| .|||||.+| +|.+.|
T Consensus 194 ~g~~KMSkS~~ns~I~L~D 212 (314)
T COG0180 194 DGPGKMSKSDPNSAIFLLD 212 (314)
T ss_pred CCCCCCCCCCCCCEEECCC
T ss_conf 9998666669998245049
No 115
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=90.57 E-value=0.42 Score=25.52 Aligned_cols=17 Identities=41% Similarity=0.108 Sum_probs=13.9
Q ss_pred CC-CCCHHHCCCCCCCCC
Q ss_conf 74-210000001222210
Q gi|254780802|r 627 PL-EKMSKSKKNVIDPMK 643 (869)
Q Consensus 627 ~g-~KMSKSkGNvi~p~~ 643 (869)
+| +|||||.||.|++++
T Consensus 222 dG~K~gsKS~gnaIwLd~ 239 (402)
T PRK05912 222 DGVKKMSKSLGNYIWLDE 239 (402)
T ss_pred CCCCCCCCCCCCCEECCC
T ss_conf 768435667998701789
No 116
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=90.56 E-value=0.36 Score=25.95 Aligned_cols=17 Identities=18% Similarity=0.292 Sum_probs=11.3
Q ss_pred CCCCCCCEEECCCHHHC
Q ss_conf 23587001306202210
Q gi|254780802|r 589 QLEGIKKKYLKPDEVIL 605 (869)
Q Consensus 589 ~~~~~~~~~~~p~~~~~ 605 (869)
+||+|.||.+.|.+++-
T Consensus 522 KMSKS~GNvidP~~vi~ 538 (877)
T PRK05729 522 KMSKSKGNVIDPLDLID 538 (877)
T ss_pred CCCCCCCCCCCHHHHHH
T ss_conf 78787889899899998
No 117
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=89.88 E-value=1.3 Score=22.24 Aligned_cols=15 Identities=40% Similarity=0.211 Sum_probs=10.5
Q ss_pred CCCCCHHHCCC-CCCC
Q ss_conf 74210000001-2222
Q gi|254780802|r 627 PLEKMSKSKKN-VIDP 641 (869)
Q Consensus 627 ~g~KMSKSkGN-vi~p 641 (869)
.|.|||.|.+| .|.+
T Consensus 250 ~G~KMSsS~p~saI~l 265 (369)
T PRK12285 250 TGGKMSSSKPESAIYL 265 (369)
T ss_pred CCCCCCCCCCCCEEEE
T ss_conf 8898768999853685
No 118
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=89.19 E-value=0.2 Score=27.68 Aligned_cols=104 Identities=22% Similarity=0.288 Sum_probs=51.3
Q ss_pred CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCC-CCHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 888389980778978987400477977899999977718985567688-140-205899999980999999999999999
Q gi|254780802|r 32 NKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMG-WDA-FGMPAENAAREHNVHPKMWTYQNIKVM 109 (869)
Q Consensus 32 ~~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G-~d~-~GlPie~~~~e~~~~~~~~~~~~i~~~ 109 (869)
.++++.+..|.= |||.||+||..+. ++ +.++|.+ |++|.|..| ||. .+.| .++. -..+....+
T Consensus 27 ~~~~~rv~~G~~-PTG~lHLGh~v~~-~k--~~~lQd~-g~~~~~~IaD~hA~i~~~---------~~~~-~~r~~~~~~ 91 (333)
T PRK08560 27 SGEEPKAYIGFE-PSGFIHLGHLVTM-NK--LADLQKA-GFKVTVLLADWHAWLNDK---------GDLE-EIRKVAEYN 91 (333)
T ss_pred CCCCCEEEECCC-CCCCCHHHHHHHH-HH--HHHHHHC-CCCEEEEECCCEEECCCC---------CCHH-HHHHHHHHH
T ss_conf 699988996617-8984538999999-99--9999977-991899961322333899---------9999-999999999
Q ss_pred HHHHHHCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCE
Q ss_conf 99999819176646982147735999999999999988963
Q gi|254780802|r 110 RKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVI 150 (869)
Q Consensus 110 k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGli 150 (869)
..++..+|+--|=..-|.-.+.....--+|.+..|-.++-+
T Consensus 92 ~~~~~A~GlDp~k~~i~~qS~~~~~~e~~~~~~~l~~~~tl 132 (333)
T PRK08560 92 KKVFEALGLDPDKTEFVLGSEFQLDPEYWLLVLKLAKNTTL 132 (333)
T ss_pred HHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCH
T ss_conf 99999707896423999898624675699999998064739
No 119
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=88.96 E-value=0.45 Score=25.33 Aligned_cols=15 Identities=27% Similarity=0.421 Sum_probs=6.8
Q ss_pred CCCCCCEEECCCHHH
Q ss_conf 358700130620221
Q gi|254780802|r 590 LEGIKKKYLKPDEVI 604 (869)
Q Consensus 590 ~~~~~~~~~~p~~~~ 604 (869)
||||.||.+.|.+++
T Consensus 526 MSKS~GNvIDP~d~I 540 (877)
T COG0525 526 MSKSKGNVIDPLDVI 540 (877)
T ss_pred CCCCCCCCCCHHHHH
T ss_conf 755578858979999
No 120
>TIGR00422 valS valyl-tRNA synthetase; InterPro: IPR002303 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=88.09 E-value=0.43 Score=25.42 Aligned_cols=65 Identities=11% Similarity=0.148 Sum_probs=35.1
Q ss_pred CCCCCCCCCCCCCCCCCC--------CCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCHHHHHCCH
Q ss_conf 543222221000145576--------7545355567777775136532001344432320033024432034541314
Q gi|254780802|r 212 EWPEKVKIMQKNWIGRSE--------GMEIRWEIVSNTIDQIEEILVYTTRPETIFGASFIAIAVDHSISEKLSCDNT 281 (869)
Q Consensus 212 ~~p~~v~~~~~~~i~~~~--------~~~~~~~~~~~~~~~~~~l~~~TtrPeTl~g~~~i~v~~~~~~~~~~~~~~~ 281 (869)
..||++.+-++..+++.+ |-.|..|++.... -+|+.-.=+.=||-.+|-|.|-|+...+..+.+-
T Consensus 232 TRPETm~gDtAvaVhP~DeRYYk~L~GK~v~~PL~~r~i-----piiaDe~VD~EFGTG~VKvTPAHD~ND~~~g~RH 304 (970)
T TIGR00422 232 TRPETMFGDTAVAVHPEDERYYKHLIGKKVILPLTGRKI-----PIIADEYVDMEFGTGAVKVTPAHDFNDYEVGKRH 304 (970)
T ss_pred CCCHHHHHCEEEEECCCCCHHHHHHCCCEEEECCCCCEE-----EEECCCCCCCCCCCCEEEEECCCCCCCHHHCCEE
T ss_conf 672256428288767897045785549889724567684-----3761775462417512776087497760013412
No 121
>pfam00579 tRNA-synt_1b tRNA synthetases class I (W and Y).
Probab=87.53 E-value=0.59 Score=24.49 Aligned_cols=18 Identities=39% Similarity=0.121 Sum_probs=13.2
Q ss_pred CC-CCCHHHCCC-CCCCCCC
Q ss_conf 74-210000001-2222100
Q gi|254780802|r 627 PL-EKMSKSKKN-VIDPMKV 644 (869)
Q Consensus 627 ~g-~KMSKSkGN-vi~p~~~ 644 (869)
+| +|||||.+| .|.+.+-
T Consensus 193 ~G~~KMSKS~~nsaI~L~d~ 212 (291)
T pfam00579 193 DGGKKMSKSAGNSAIFLDDE 212 (291)
T ss_pred CCCCCCCCCCCCCEEECCCC
T ss_conf 78766367899972666798
No 122
>cd00806 TrpRS_core Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer, which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=87.18 E-value=1.9 Score=21.06 Aligned_cols=20 Identities=25% Similarity=0.155 Sum_probs=12.6
Q ss_pred CHHHHCCCCCCCCCCCHHHHH
Q ss_conf 334401455544332023455
Q gi|254780802|r 536 PVDQYIGGIEHAVLHLLYARF 556 (869)
Q Consensus 536 P~D~~i~g~d~~~~~~~~~r~ 556 (869)
-+|+...|.||. -|+-.+|-
T Consensus 138 ~~d~vp~G~DQ~-~h~~laRd 157 (282)
T cd00806 138 QADLVPVGEDQD-PHLELTRD 157 (282)
T ss_pred CCCCCCCCHHHH-HHHHHHHH
T ss_conf 565052220479-99999999
No 123
>cd00395 Tyr_Trp_RS_core Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=86.77 E-value=1.1 Score=22.77 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=16.1
Q ss_pred CCCHHHCCCCCC-CCCCCCCCCHHHHHHHHHH
Q ss_conf 210000001222-2100123463356665530
Q gi|254780802|r 629 EKMSKSKKNVID-PMKVIKSYGADTARLFVLS 659 (869)
Q Consensus 629 ~KMSKSkGNvi~-p~~~i~~yGaD~lRl~~~~ 659 (869)
+|||||.||.+- +.+ .++.++=.++.
T Consensus 186 ~KMSKS~~ns~i~l~D-----sp~~i~~KI~~ 212 (274)
T cd00395 186 KKMSKSDGNAIIFLLD-----SPEEIYKKIMK 212 (274)
T ss_pred CCCCCCCCCCEEECCC-----CHHHHHHHHEE
T ss_conf 6745789984465469-----99999998722
No 124
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=86.48 E-value=0.74 Score=23.83 Aligned_cols=14 Identities=29% Similarity=0.209 Sum_probs=11.1
Q ss_pred CCCCCCHHHCCCCC
Q ss_conf 47421000000122
Q gi|254780802|r 626 GPLEKMSKSKKNVI 639 (869)
Q Consensus 626 ~~g~KMSKSkGNvi 639 (869)
.+|.|||||.||.+
T Consensus 220 ldG~KmgKs~~~a~ 233 (401)
T COG0162 220 LDGKKMGKSEGGAV 233 (401)
T ss_pred CCCCCCCCCCCCCE
T ss_conf 98881566677867
No 125
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=86.44 E-value=1.5 Score=21.75 Aligned_cols=21 Identities=14% Similarity=0.252 Sum_probs=14.6
Q ss_pred HCCCHHHHCCCCCCCCCCCHH
Q ss_conf 114334401455544332023
Q gi|254780802|r 533 QWFPVDQYIGGIEHAVLHLLY 553 (869)
Q Consensus 533 ~~~P~D~~i~g~d~~~~~~~~ 553 (869)
..+-+|.-.+|.||--+|++-
T Consensus 223 ~~L~vDi~~gGmDQRKi~mLA 243 (399)
T PTZ00126 223 FFLGADICQLGMDQRKVNMLA 243 (399)
T ss_pred HHCCCCEEECCHHHHHHHHHH
T ss_conf 305676443360199999999
No 126
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=85.32 E-value=0.29 Score=26.66 Aligned_cols=41 Identities=29% Similarity=0.402 Sum_probs=17.6
Q ss_pred CCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 77898984385334564322334752334303444544321
Q gi|254780802|r 166 VLANEQVINGRGWRSDAPVEQRSLPQWFFKISDLSQELLDS 206 (869)
Q Consensus 166 ~la~~Ev~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 206 (869)
.++-.++.+..|+.|+...+.++...+||+++++.+.|.+.
T Consensus 164 ~~~P~~l~~p~~~i~g~~p~~r~~~hyFf~L~~~~~~L~~~ 204 (558)
T COG0143 164 TLDPTELINPVCVISGATPEVREEEHYFFRLSKFQDKLLEW 204 (558)
T ss_pred CCCCHHCCCCEEEEECCCCCCCCCEEEEEEHHHHHHHHHHH
T ss_conf 57921217981686479764335405998879869999999
No 127
>TIGR00464 gltX_bact glutamyl-tRNA synthetase; InterPro: IPR004527 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of E. coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure . ; GO: 0000166 nucleotide binding, 0004818 glutamate-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006424 glutamyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=84.22 E-value=0.46 Score=25.28 Aligned_cols=92 Identities=18% Similarity=0.225 Sum_probs=49.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEC
Q ss_conf 89789874004779778999999777189855676881402058999999809999999999999999999981917664
Q gi|254780802|r 43 PYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQLQSIGLSIDW 122 (869)
Q Consensus 43 Py~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~~~~lG~~~DW 122 (869)
|-|||.||||-+||=+-==.+||- ..|.=+|+.==. +-.-...+..+.+.+.|+=||+..|=
T Consensus 8 PSPTG~LHiGg~RTAlFNyLfAr~--~~G~F~lRiEDT----------------D~eR~~~e~~~~i~e~LkWlGi~wDE 69 (513)
T TIGR00464 8 PSPTGYLHIGGARTALFNYLFARH--TGGKFILRIEDT----------------DLERNIEEAEESILEGLKWLGISWDE 69 (513)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHH--CCCCEEEEEEEC----------------CCCCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf 888754353368999999999986--389379987536----------------71007244689999888745867466
Q ss_pred CCCEECCC--HHHHH---HHH-HHHHHHHHCCCEEEC
Q ss_conf 69821477--35999---999-999999988963412
Q gi|254780802|r 123 SKDFATCD--VDYYH---CQQ-LLFLDFMKHNVIVRK 153 (869)
Q Consensus 123 ~r~y~T~d--~~y~~---~v~-w~f~~L~~kGliyrg 153 (869)
+ .+.--+ |-|.. .+- ....+|-++|+.||=
T Consensus 70 s-~~~gG~Y~Py~QS~R~~~Y~~~~~~Ll~~g~AYrC 105 (513)
T TIGR00464 70 S-VYVGGNYGPYYQSQRLDIYKKYIKELLEEGLAYRC 105 (513)
T ss_pred C-CCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 7-56898630111013678999999999745993442
No 128
>TIGR00467 lysS_arch lysyl-tRNA synthetase; InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and some eubacteria . Moreover in some eubacteria there is a gene X, which is similar to a part of lysyl-tRNA synthetase from class II. Lysyl-tRNA synthetase is duplicated in some species with, for example in E. coli, as a constitutive gene (lysS) and an induced one (lysU). A refined crystal structures shows that the active site of lysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding .; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=81.29 E-value=3.3 Score=19.36 Aligned_cols=63 Identities=16% Similarity=0.244 Sum_probs=45.6
Q ss_pred CCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCC-CCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 742100000012222100123463356665530133-211111343210114556778899999
Q gi|254780802|r 627 PLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSP-PDRDIIWSNKGVDSTYQFIQQIWRLIY 689 (869)
Q Consensus 627 ~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~~~~~~~-~~~d~~~s~~~i~~~~rfl~kl~~l~~ 689 (869)
.|-+||.|+|.++...++++-+..+.+|+-++...| ....+.|+...+...+..+.++-++..
T Consensus 279 ~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~d~~~~~d~~~~~d~~~~~~~ 342 (539)
T TIGR00467 279 KGGPLSSSKGDVLPVKDWLEVYPPEILRFLLLRTKPNTEKHIDFDLGKIPDLGDDYDKLEDFYY 342 (539)
T ss_pred CCCCCCCCCCCEEEHHHHHHHCCHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHHH
T ss_conf 2332323456323233454421435755545311677521220240232356777777777762
No 129
>TIGR00233 trpS tryptophanyl-tRNA synthetase; InterPro: IPR002306 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Tryptophanyl-tRNA synthetase (6.1.1.2 from EC) is an alpha2 dimer that belongs to class Ib. The crystal structure of tryptophanyl-tRNA synthetase is known .; GO: 0000166 nucleotide binding, 0004830 tryptophan-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006436 tryptophanyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=71.18 E-value=2.4 Score=20.33 Aligned_cols=16 Identities=44% Similarity=0.316 Sum_probs=12.6
Q ss_pred CCCCHHHCCC---CCCCCC
Q ss_conf 4210000001---222210
Q gi|254780802|r 628 LEKMSKSKKN---VIDPMK 643 (869)
Q Consensus 628 g~KMSKSkGN---vi~p~~ 643 (869)
-+|||||.=| +|.+.|
T Consensus 221 ~kKMSkS~p~~~~~IfL~D 239 (366)
T TIGR00233 221 KKKMSKSDPNQNSAIFLTD 239 (366)
T ss_pred CCCCCCCCCCCCCEECCCC
T ss_conf 5355556788882020798
No 130
>TIGR02220 phg_TIGR02220 phage conserved hypothetical protein, C-terminal domain; InterPro: IPR011741 This entry represents the conserved C-terminal domain of a family of proteins found exclusively in bacteriophage and in bacterial prophage regions. The functions of this domain and the proteins containing it are unknown..
Probab=63.82 E-value=3.3 Score=19.39 Aligned_cols=36 Identities=22% Similarity=0.481 Sum_probs=21.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf 43222221000145576754535556777777513653200134443232
Q gi|254780802|r 213 WPEKVKIMQKNWIGRSEGMEIRWEIVSNTIDQIEEILVYTTRPETIFGAS 262 (869)
Q Consensus 213 ~p~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~TtrPeTl~g~~ 262 (869)
.-..|-.+...|+|...+ +..+...|| ||+||||+.
T Consensus 40 FK~VID~k~~~W~Gt~~~---------nG~~~e~YL-----RP~TLFg~K 75 (83)
T TIGR02220 40 FKKVIDNKVSEWLGTEFR---------NGKKAEKYL-----RPKTLFGNK 75 (83)
T ss_pred CCCHHHHHHHHHCCCCCC---------CCCCHHHCC-----CCCCCCCCC
T ss_conf 312011210434275345---------784411347-----863335788
No 131
>pfam01927 DUF82 Protein of unknown function DUF82. This prokaryotic protein family has no known function. The protein contains four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=62.71 E-value=4.5 Score=18.43 Aligned_cols=89 Identities=12% Similarity=0.188 Sum_probs=43.9
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCEECCCHHHHHHHHHHHH
Q ss_conf 99977718985567688140205899999980999999999999999999998191766469821477359999999999
Q gi|254780802|r 63 VARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFL 142 (869)
Q Consensus 63 ~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~ 142 (869)
+|||.||.||++++..+.+- --+...|.+.+- .......+-.++....-++.+ .+.+ ...|+.
T Consensus 12 LAr~LR~lG~Dt~~~~~~~D--~~l~~~A~~E~R---ilLTrD~~L~~r~~~~~~~ll------~~~~------~~~Ql~ 74 (146)
T pfam01927 12 LARWLRLLGYDTLYDNDFED--DELLAIAAKEGR---ILLTRDRGLLKRRLLTGGVLV------RSLD------PEEQLR 74 (146)
T ss_pred HHHHHHHCCCCEEECCCCCH--HHHHHHHHHCCC---EEEECCHHHHHHCCCCCEEEE------CCCC------HHHHHH
T ss_conf 99999986988701599985--999999866498---999678899973323784997------8999------999999
Q ss_pred HHHHC-CCEEECCEEEECCCCCCCCCC
Q ss_conf 99988-963412213321477676778
Q gi|254780802|r 143 DFMKH-NVIVRKTAQVNWDPVEQTVLA 168 (869)
Q Consensus 143 ~L~~k-Gliyrg~~pV~wcp~~~t~la 168 (869)
.+.+. |+-..-...-.=||.|+.+|-
T Consensus 75 ev~~~~~l~~~~~~~~sRC~~CN~~L~ 101 (146)
T pfam01927 75 EVIERFGLKLSLKPEFSRCLKCNGPLE 101 (146)
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCE
T ss_conf 999966997433777785656798995
No 132
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=62.28 E-value=9 Score=16.38 Aligned_cols=18 Identities=11% Similarity=0.335 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999988
Q gi|254780802|r 705 SLISKSTKFLERIEENYQ 722 (869)
Q Consensus 705 ~ils~~~~~i~~v~~~~e 722 (869)
.||.+..+.-.....++|
T Consensus 443 ~~l~eaak~~~eL~~Ale 460 (477)
T CHL00040 443 EIIREAAKWSPELAAACE 460 (477)
T ss_pred HHHHHHHHHCHHHHHHHH
T ss_conf 999999842989999999
No 133
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit; InterPro: IPR004486 This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.; GO: 0006730 one-carbon compound metabolic process.
Probab=61.66 E-value=9.3 Score=16.30 Aligned_cols=11 Identities=45% Similarity=0.939 Sum_probs=4.1
Q ss_pred CCCCCCCCCCC
Q ss_conf 13321111134
Q gi|254780802|r 660 DSPPDRDIIWS 670 (869)
Q Consensus 660 ~~~~~~d~~~s 670 (869)
.+|.++|..|-
T Consensus 331 ~~PieedteWG 341 (401)
T TIGR00381 331 DSPIEEDTEWG 341 (401)
T ss_pred CCCCCCCCCCC
T ss_conf 67866678888
No 134
>pfam01314 AFOR_C Aldehyde ferredoxin oxidoreductase, domains 2 & 3. Aldehyde ferredoxin oxidoreductase (AOR) catalyses the reversible oxidation of aldehydes to their corresponding carboxylic acids with their accompanying reduction of the redox protein ferredoxin. This family is composed of two structural domains that bind the tungsten cofactor via DXXGL(C/D) motifs. In addition to maintaining specific binding interactions with the cofactor, another role for domains 2 and 3 may be to regulate substrate access to AOR.
Probab=57.04 E-value=11 Score=15.78 Aligned_cols=12 Identities=0% Similarity=-0.067 Sum_probs=4.7
Q ss_pred CCCCCCHHHHHH
Q ss_conf 134321011455
Q gi|254780802|r 668 IWSNKGVDSTYQ 679 (869)
Q Consensus 668 ~~s~~~i~~~~r 679 (869)
+++.+.+..+..
T Consensus 297 ~~t~eel~~~ge 308 (382)
T pfam01314 297 DYTPEELLKAGE 308 (382)
T ss_pred CCCHHHHHHHHH
T ss_conf 899999999999
No 135
>COG5270 PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis]
Probab=55.95 E-value=3.9 Score=18.91 Aligned_cols=26 Identities=15% Similarity=0.100 Sum_probs=21.2
Q ss_pred HHCCCEEECCEEEECCCCCCCCCCHH
Q ss_conf 98896341221332147767677898
Q gi|254780802|r 145 MKHNVIVRKTAQVNWDPVEQTVLANE 170 (869)
Q Consensus 145 ~~kGliyrg~~pV~wcp~~~t~la~~ 170 (869)
.+++-.+-|..|++||-.|+-|+-..
T Consensus 2 ~kk~~~~~gk~~iyWCe~cNlPl~~~ 27 (202)
T COG5270 2 RKKMPVVLGKFPIYWCEKCNLPLLGR 27 (202)
T ss_pred CCCCCEEECCCCEEEHHHCCCCCCCC
T ss_conf 75553030543064132288743555
No 136
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase; InterPro: IPR011981 This enzyme catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. 4-hydroxyphenylacetate arises from the degradation of tyrosine. The substrate, 3,4-dihydroxyphenylacetate (homoprotocatechuate) arises from the action of a hydroxylase on 4-hydroxyphenylacetate. The aromatic ring is opened by this dioxygenase exo to the 3,4-diol resulting in 2-hydroxy-5-carboxymethylmuconate semialdehyde..
Probab=55.26 E-value=4 Score=18.78 Aligned_cols=22 Identities=14% Similarity=0.308 Sum_probs=9.3
Q ss_pred HCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 1314589998865311112455
Q gi|254780802|r 278 CDNTDIKEFCDEEKQKGTSLSV 299 (869)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~ 299 (869)
....++.++.+..+..|...+.
T Consensus 69 ~~~Edld~l~~~~~~~G~~~~~ 90 (312)
T TIGR02295 69 SKEEDLDKLADFFQELGLPVRL 90 (312)
T ss_pred CCCHHHHHHHHHHHHCCCEEEE
T ss_conf 8805689999999957975889
No 137
>cd07963 Anticodon_Ia_Cys Anticodon-binding domain of cysteinyl tRNA synthetases. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA.
Probab=54.50 E-value=12 Score=15.51 Aligned_cols=64 Identities=13% Similarity=0.239 Sum_probs=42.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 321011455677889999976302466789756999999999999999998-8168899999999999999999
Q gi|254780802|r 671 NKGVDSTYQFIQQIWRLIYNAKDELQTSSTKKDISLISKSTKFLERIEENY-QNLSFNKAVANIHELVNVISKP 743 (869)
Q Consensus 671 ~~~i~~~~rfl~kl~~l~~~~~~~~~~~~~~~D~~ils~~~~~i~~v~~~~-e~~~f~~ai~~i~~f~n~ls~~ 743 (869)
++.+..+.+-|.|+|+.+....... .. ...+ ....++...+| +.|....|++.+++++..+++.
T Consensus 1 de~L~~Ak~~Ldrly~~l~~~~~~~-~~-~~~~-------~~~~~~F~~Am~DDlNTp~Ala~lf~~vk~iN~~ 65 (156)
T cd07963 1 DDNLEDARAALERLYTALRGVPPTT-VD-IDWG-------EPFAERFIAAMDDDFNTPEALAVLFELAREINRL 65 (156)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCC-CC-CCHH-------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 9359999999999999985778554-56-4001-------6899999999876348799999999999999986
No 138
>KOG1149 consensus
Probab=51.91 E-value=12 Score=15.46 Aligned_cols=21 Identities=19% Similarity=0.605 Sum_probs=11.6
Q ss_pred HHHHHHHHCCCHHHHHHHHHH
Q ss_conf 999999972234389999999
Q gi|254780802|r 764 LEKLIIMMSPMIPHLAEECWQ 784 (869)
Q Consensus 764 l~~l~~lLaPi~PhiaEEiw~ 784 (869)
+..++.+|.|++--+..+.|+
T Consensus 439 ia~l~~~l~~~~~~~~~~e~n 459 (524)
T KOG1149 439 IAHLLKILNPSALELEQDEWN 459 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 999986552666665389999
No 139
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=51.13 E-value=5.3 Score=17.96 Aligned_cols=16 Identities=13% Similarity=-0.012 Sum_probs=13.3
Q ss_pred EEECCEEEECCCCCCC
Q ss_conf 3412213321477676
Q gi|254780802|r 150 IVRKTAQVNWDPVEQT 165 (869)
Q Consensus 150 iyrg~~pV~wcp~~~t 165 (869)
-|+...|..|||-|+.
T Consensus 8 dy~~~~~~~WCpGCG~ 23 (286)
T PRK11866 8 DYAVKRPPIWCPGCGN 23 (286)
T ss_pred HCCCCCCCCCCCCCCC
T ss_conf 8088999866899971
No 140
>KOG3361 consensus
Probab=50.11 E-value=6.4 Score=17.40 Aligned_cols=19 Identities=32% Similarity=0.422 Sum_probs=15.5
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q ss_conf 23454533322211134672
Q gi|254780802|r 330 NFVFMNYGTGAIFGCPFADQ 349 (869)
Q Consensus 330 ~~V~~~~GTG~V~~~P~h~~ 349 (869)
+--+++.|||+| .||++|.
T Consensus 47 dK~dpnVGtGlV-GAPACGD 65 (157)
T KOG3361 47 DKNDPNVGTGLV-GAPACGD 65 (157)
T ss_pred CCCCCCCCCCCC-CCCCCCC
T ss_conf 789997655553-5765220
No 141
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric; InterPro: IPR006004 One pathway for the assimilation of ammonia and glutamate biosynthesis involves homotetrameric glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate . 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. .
Probab=48.95 E-value=6.2 Score=17.50 Aligned_cols=27 Identities=15% Similarity=0.155 Sum_probs=16.5
Q ss_pred HCCCCHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 013564665488899997404677520
Q gi|254780802|r 394 LDGMTNTEALQAVMSHLEKQNIKNSPI 420 (869)
Q Consensus 394 ~~g~~~~~~~~~i~~~l~~~~~~~~~~ 420 (869)
..++...-|+++=++++++.+++..+.
T Consensus 315 RrtRedmtAr~EEi~ha~eEGVkfhfl 341 (462)
T TIGR01316 315 RRTREDMTAREEEIKHAEEEGVKFHFL 341 (462)
T ss_pred ECCCCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf 547775136699999885389289987
No 142
>PRK13794 hypothetical protein; Provisional
Probab=47.87 E-value=12 Score=15.45 Aligned_cols=33 Identities=6% Similarity=0.048 Sum_probs=23.8
Q ss_pred CEEECCEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCC
Q ss_conf 63412213321477676778989843853345643223
Q gi|254780802|r 149 VIVRKTAQVNWDPVEQTVLANEQVINGRGWRSDAPVEQ 186 (869)
Q Consensus 149 liyrg~~pV~wcp~~~t~la~~Ev~~g~~~~~~~~v~~ 186 (869)
..|-|+-.++||..|+.||-.. .|..|+.+...
T Consensus 2 ~~~lgk~~l~WC~~CNvPll~~-----~C~~CG~~~~~ 34 (473)
T PRK13794 2 KTYLGKIHLKWCDNCNTPVLDK-----KCAICGSETRE 34 (473)
T ss_pred CCEEEEEEEEECCCCCCCCCCC-----CHHHCCCCCEE
T ss_conf 6456016888847789711457-----00121787049
No 143
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase; InterPro: IPR010121 Pyruvate phosphate dikinase (PPDK, or pyruvate orthophosphate dikinase) is found in plants, bacteria and archaea. The amino acid sequence identity between bacterial and plant enzymes is high, and they are similar in sequence to other PEP-utilizing enzymes. PPDK catalyses the reversible conversion of ATP and pyruvate to AMP and PEP (phosphoenolpyruvate). In bacteria such as Clostridium symbiosum, PPDK uses Mg2+ and NH4+ ions as cofactors . The enzyme has three domains: the N- and C-terminal domains each have an active site centre that catalyses a different step in the reaction, and the middle domain has a carrier histidine residue that moves between the two active centres. In plants, PPDK is localised predominantly in chloroplast stroma where it catalyses the rate-limiting step in the C4 photosynthetic pathway, namely the synthesis of PEP, which acts as the primary CO2 acceptor in C4 photosynthesis . PPDK activity in C4 plants is strictly regulated by light, its activity decreasing in darkness. This response is regulated by phosphorylation and dephosphorylation of the enzyme using ADP; such regulation is not seen in the bacterial form of the enzyme. PPDK is also found in C3 plants, but it is not known to have a photosynthetic role .; GO: 0050242 pyruvate phosphate dikinase activity.
Probab=47.63 E-value=15 Score=14.79 Aligned_cols=37 Identities=5% Similarity=-0.001 Sum_probs=25.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC-CHHHHHHHCCCCCEEE
Q ss_conf 679980888899999999974-7888998469982599
Q gi|254780802|r 821 RACITVSMNTDDDFIKKTVLE-LNVIKNILQGKSPKKI 857 (869)
Q Consensus 821 r~~i~v~~~~~~~~i~~~~~~-~~~i~~~l~~k~~~k~ 857 (869)
.-.|.|+.-.++++++.+-.. ++.|.+.+..+.-.++
T Consensus 747 ~pEIMIPLv~~~~EL~~l~~~v~~~v~~~v~~~~g~~~ 784 (920)
T TIGR01828 747 HPEIMIPLVGEKNELKILKELVIEEVAAEVFKEYGVTL 784 (920)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEE
T ss_conf 55214555787789999999999999999986367230
No 144
>PRK13795 hypothetical protein; Provisional
Probab=46.51 E-value=11 Score=15.72 Aligned_cols=33 Identities=9% Similarity=-0.043 Sum_probs=23.8
Q ss_pred CCEEECCEEEECCCCCCCCCCHHHHHCCCCCCCCCCCC
Q ss_conf 96341221332147767677898984385334564322
Q gi|254780802|r 148 NVIVRKTAQVNWDPVEQTVLANEQVINGRGWRSDAPVE 185 (869)
Q Consensus 148 Gliyrg~~pV~wcp~~~t~la~~Ev~~g~~~~~~~~v~ 185 (869)
+-+|-|+..++||+.|+.||-.. .|..|+.+..
T Consensus 3 ~p~~lgk~~l~WC~~CNvPll~~-----~C~~cg~~~~ 35 (630)
T PRK13795 3 RPVYLGKMYIYWCEKCNLPLLGK-----RCGACGCEGF 35 (630)
T ss_pred CCEEEEEEEEEECCCCCCEECCC-----CCCCCCCCCE
T ss_conf 85265016999858889732157-----5522268824
No 145
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=46.27 E-value=7.2 Score=17.04 Aligned_cols=17 Identities=12% Similarity=0.169 Sum_probs=14.1
Q ss_pred CEEECCEEEECCCCCCC
Q ss_conf 63412213321477676
Q gi|254780802|r 149 VIVRKTAQVNWDPVEQT 165 (869)
Q Consensus 149 liyrg~~pV~wcp~~~t 165 (869)
+.|++..++.|||-|+.
T Consensus 4 ~dr~~~~~~~WCPGCG~ 20 (284)
T PRK11869 4 FDRPGSIDIAWCPGCGN 20 (284)
T ss_pred CCCCCCCCCCCCCCCCC
T ss_conf 43678998757899975
No 146
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha subunit, Gram-positive type; InterPro: IPR006308 These are the polypeptide chains of DNA polymerase III. Full-length homologs of this protein are restricted to the Gram-positive lineages, including the Mycoplasmas. This protein is designated alpha chain and given the gene symbol polC, but is not a full-length homolog of other polC genes. The N-terminal region of about 200 amino acids is rich in low-complexity sequence and poorly alignable. ; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0005737 cytoplasm.
Probab=46.03 E-value=16 Score=14.63 Aligned_cols=69 Identities=23% Similarity=0.335 Sum_probs=31.4
Q ss_pred CCCCEECCCCCCCEEEEEE-ECCCC-CCCCCCC---CCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3786103777774157763-11234-5453332---22111346721101221035443210167765554222
Q gi|254780802|r 309 YTGIHVKHPLNPNVVIPVY-IANFV-FMNYGTG---AIFGCPFADQRDMDFAKKYGLPIIPIMKRSINHSQDIE 377 (869)
Q Consensus 309 ~~G~~~~~P~~~~~~ipv~-~~~~V-~~~~GTG---~V~~~P~h~~~D~~~~~k~glpi~~v~~~~~~~~~~~~ 377 (869)
++|+.-.|||.|+..=|== -.+|+ |...|.| ....||-||....-..-=++||+--=++-.|+.-.|++
T Consensus 705 l~gITEVNPL~PHY~Cp~Cky~Ef~~D~~~~~GfDLp~K~CP~Cgak~pl~kDG~~IPFETFLGF~GDKVPDID 778 (1264)
T TIGR01405 705 LTGITEVNPLPPHYLCPNCKYSEFVTDGSVGSGFDLPDKDCPKCGAKAPLKKDGQDIPFETFLGFKGDKVPDID 778 (1264)
T ss_pred HCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 21661157576875087873553003787788776857888888877763457369985001677888468644
No 147
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=39.80 E-value=20 Score=14.00 Aligned_cols=15 Identities=13% Similarity=-0.146 Sum_probs=6.2
Q ss_pred ECCCCCCCCCCHHHH
Q ss_conf 214776767789898
Q gi|254780802|r 158 NWDPVEQTVLANEQV 172 (869)
Q Consensus 158 ~wcp~~~t~la~~Ev 172 (869)
+.||.|+.-.+..|+
T Consensus 100 Y~C~~C~~ryt~~eA 114 (147)
T smart00531 100 YKCPNCQSKYTFLEA 114 (147)
T ss_pred EECCCCCCEECHHHH
T ss_conf 889999978629999
No 148
>pfam04405 ScdA_N Domain of Unknown function (DUF542). This domain is always found in conjunction with the HHE domain (pfam03794) at the N-terminus.
Probab=36.87 E-value=22 Score=13.69 Aligned_cols=47 Identities=21% Similarity=0.223 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCH-HHHHHHHHHCCCHHHHH
Q ss_conf 977899999977718985567688140205-89999998099999999
Q gi|254780802|r 56 NYVIGDVVARFMRASGYSVLHPMGWDAFGM-PAENAAREHNVHPKMWT 102 (869)
Q Consensus 56 ~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~Gl-Pie~~~~e~~~~~~~~~ 102 (869)
+.|+.|+++++-+-..-==-|..-|=|+|- |++.++.++++++....
T Consensus 2 ~~tvgeiv~~~p~~a~vF~~~gIDFCCgG~~~L~eA~~~~~ld~~~vl 49 (56)
T pfam04405 2 NQTVGEIVAEDPRAARVFRKYGIDFCCGGKVSLAEACKEKGLDPEEVL 49 (56)
T ss_pred CCCHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCHHHHH
T ss_conf 771999999794799999994966568998069999988298999999
No 149
>TIGR00357 TIGR00357 methionine-R-sulfoxide reductase; InterPro: IPR002579 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine . It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set , . The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represents MsrB, the crystal structure of which has been determined to 1.8A . The overall structure shows no resemblance to the structures of MsrA (IPR002569 from INTERPRO) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. Unlike the MsrA domain, the MsrB domain activates the cysteine or selenocysteine nucleophile through a unique Cys-Arg-Asp/Glu catalytic triad. The collapse of the reaction intermediate most likely results in the formation of a sulphenic or selenenic acid moiety. Regeneration of the active site occurs through a series of thiol-disulphide exchange steps involving another active site Cys residue and thioredoxin. In a number of pathogenic bacteria, including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis, a thioredoxin domain is fused to the N-terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains. ; GO: 0008113 peptide-methionine-(S)-S-oxide reductase activity.
Probab=34.22 E-value=11 Score=15.66 Aligned_cols=21 Identities=29% Similarity=0.657 Sum_probs=11.6
Q ss_pred HCCCCCCCCCCCCCCCCCCCC--CCCC
Q ss_conf 013676443564323456664--3332
Q gi|254780802|r 490 CVKCGSEALRETDTMDTFVDS--SWYY 514 (869)
Q Consensus 490 ~~~~~~~~~r~~dvld~w~dS--~~~~ 514 (869)
|..||.++....|-+ || ||+.
T Consensus 43 di~~g~PLF~S~dKF----dSGcGWPS 65 (135)
T TIGR00357 43 DITCGEPLFSSEDKF----DSGCGWPS 65 (135)
T ss_pred EECCCCCCCCCCCCC----CCCCCCCC
T ss_conf 621688853643753----58787965
No 150
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=33.49 E-value=20 Score=14.02 Aligned_cols=19 Identities=32% Similarity=0.541 Sum_probs=15.3
Q ss_pred HHHHHHHCCCCCCCCC-CCC
Q ss_conf 9997771898556768-814
Q gi|254780802|r 63 VARFMRASGYSVLHPM-GWD 81 (869)
Q Consensus 63 ~aRy~rm~G~~Vl~~~-G~d 81 (869)
+||+.||.||++.|.- ..|
T Consensus 18 LARwLRllGydt~~~~~~~d 37 (165)
T COG1656 18 LARWLRLLGYDTVYSSNESD 37 (165)
T ss_pred HHHHHHHCCCCEEEECCCCC
T ss_conf 99999980884254236783
No 151
>pfam07223 DUF1421 Protein of unknown function (DUF1421). This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function.
Probab=31.82 E-value=19 Score=14.19 Aligned_cols=40 Identities=15% Similarity=0.102 Sum_probs=31.9
Q ss_pred HHHCCCCCCCCCCCCC-----CCHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 0000012222100123-----463356665530133211111343
Q gi|254780802|r 632 SKSKKNVIDPMKVIKS-----YGADTARLFVLSDSPPDRDIIWSN 671 (869)
Q Consensus 632 SKSkGNvi~p~~~i~~-----yGaD~lRl~~~~~~~~~~d~~~s~ 671 (869)
|-+-||-+..+|+||| |.-|-+|-.+.-..+-++.++||.
T Consensus 313 s~~s~nr~P~ddvieKva~MGF~rDqVratvrrltEnGQ~VDlN~ 357 (359)
T pfam07223 313 SPQSGNRVPIDDVVEKVATMGFPRDQVRATVRRLTENGQPVDLNV 357 (359)
T ss_pred CCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 876667774478898877538738899999999865786332102
No 152
>pfam06172 Cupin_5 Cupin superfamily (DUF985). Family of uncharacterized proteins found in bacteria and eukaryotes that belongs to the Cupin superfamily.
Probab=29.76 E-value=29 Score=12.92 Aligned_cols=30 Identities=20% Similarity=0.153 Sum_probs=19.4
Q ss_pred EECCCCCCCCCCCCC--CCCCCCCCCCCHHHH
Q ss_conf 311234545333222--111346721101221
Q gi|254780802|r 327 YIANFVFMNYGTGAI--FGCPFADQRDMDFAK 356 (869)
Q Consensus 327 ~~~~~V~~~~GTG~V--~~~P~h~~~D~~~~~ 356 (869)
+-+..+.+..+-++| +.+|+++..||++++
T Consensus 108 w~aa~l~~~~~~~Lvsc~VaPGF~f~Dfela~ 139 (139)
T pfam06172 108 WFASRLESLGGFSLVGCTVAPGFDFEDFELAE 139 (139)
T ss_pred EEEEEECCCCCCEEEEEEECCCCCCCCCCCCC
T ss_conf 99878879998199997734979676589369
No 153
>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II; InterPro: IPR011914 RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in some other genome. Domain I (IPR011913 from INTERPRO) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .; GO: 0016773 phosphotransferase activity alcohol group as acceptor, 0016779 nucleotidyltransferase activity, 0005975 carbohydrate metabolic process.
Probab=29.74 E-value=18 Score=14.27 Aligned_cols=15 Identities=20% Similarity=0.616 Sum_probs=6.4
Q ss_pred HHHCCCCHHHHHHHH
Q ss_conf 000135646654888
Q gi|254780802|r 392 SFLDGMTNTEALQAV 406 (869)
Q Consensus 392 ~~~~g~~~~~~~~~i 406 (869)
.+.+|.+.+...++|
T Consensus 128 ~f~~g~STT~ii~ki 142 (144)
T TIGR02199 128 PFVEGRSTTAIIEKI 142 (144)
T ss_pred EEECCCCCHHHHHHH
T ss_conf 521798407899998
No 154
>pfam02744 GalP_UDP_tr_C Galactose-1-phosphate uridyl transferase, C-terminal domain. SCOP reports fold duplication with N-terminal domain. Both involved in Zn and Fe binding.
Probab=28.86 E-value=30 Score=12.82 Aligned_cols=11 Identities=18% Similarity=0.320 Sum_probs=5.8
Q ss_pred CCCCCCCCCCC
Q ss_conf 21113467211
Q gi|254780802|r 341 IFGCPFADQRD 351 (869)
Q Consensus 341 V~~~P~h~~~D 351 (869)
+|++|..+.+.
T Consensus 100 ~HqaP~~~~~~ 110 (168)
T pfam02744 100 IHQAPLNAEEL 110 (168)
T ss_pred HHCCCCCCCCC
T ss_conf 53178986655
No 155
>pfam11931 DUF3449 Domain of unknown function (DUF3449). This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 181 to 207 amino acids in length. This domain has two conserved sequence motifs: PIP and CEICG.
Probab=28.66 E-value=17 Score=14.47 Aligned_cols=14 Identities=14% Similarity=0.290 Sum_probs=8.6
Q ss_pred CCHHHCCCCCCCCC
Q ss_conf 10000001222210
Q gi|254780802|r 630 KMSKSKKNVIDPMK 643 (869)
Q Consensus 630 KMSKSkGNvi~p~~ 643 (869)
-|--|.|||++-..
T Consensus 165 E~ED~eGNVm~~k~ 178 (187)
T pfam11931 165 EVEDEEGNVMSKKT 178 (187)
T ss_pred EEECCCCCCCCHHH
T ss_conf 65537788755988
No 156
>COG4905 Predicted membrane protein [Function unknown]
Probab=28.55 E-value=24 Score=13.52 Aligned_cols=28 Identities=11% Similarity=0.176 Sum_probs=21.6
Q ss_pred HHHHHH----HHHHHHCCCEEECCEEEECCCC
Q ss_conf 999999----9999988963412213321477
Q gi|254780802|r 135 HCQQLL----FLDFMKHNVIVRKTAQVNWDPV 162 (869)
Q Consensus 135 ~~v~w~----f~~L~~kGliyrg~~pV~wcp~ 162 (869)
.++-|+ |+...+|.+++||.-.-+|||.
T Consensus 14 SfiGWvwEt~fcS~~dkk~V~RGFL~GpyCPi 45 (243)
T COG4905 14 SFIGWVWETIFCSVNDKKIVNRGFLTGPYCPI 45 (243)
T ss_pred HHHHHHHHHHHEEECCCEEEEECCCCCCCCCC
T ss_conf 99999999862430431267501225677761
No 157
>pfam05527 DUF758 Domain of unknown function (DUF758). Family of eukaryotic proteins with unknown function, which are induced by tumour necrosis factor.
Probab=28.44 E-value=30 Score=12.77 Aligned_cols=75 Identities=16% Similarity=0.096 Sum_probs=31.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 111134321011455677889999976302466789756999999999999999998816889999999999999
Q gi|254780802|r 665 RDIIWSNKGVDSTYQFIQQIWRLIYNAKDELQTSSTKKDISLISKSTKFLERIEENYQNLSFNKAVANIHELVNV 739 (869)
Q Consensus 665 ~d~~~s~~~i~~~~rfl~kl~~l~~~~~~~~~~~~~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai~~i~~f~n~ 739 (869)
+.-.|+.+.+.-+.+|-+++-+++.-+....+.+.+..-..+...++.+-..+.+..+..-..+....|....|.
T Consensus 75 Rn~qf~~eEl~~~~~fr~K~~~~amt~iSFyeVdfTfD~~~L~~~L~ecr~~L~~lV~~HLT~KS~~RI~~VF~~ 149 (186)
T pfam05527 75 RNNQFSPEELALAERFRKKLHQLAMTAISFYEVDFTFDRNVLSKLLTECRDLLHQLVQRHLTPKSHGRINHVFNH 149 (186)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 337899999999999999999888998523310100219999999999999999999975776357789999870
No 158
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=25.60 E-value=34 Score=12.44 Aligned_cols=20 Identities=25% Similarity=0.781 Sum_probs=11.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 221123222223422333468463
Q gi|254780802|r 433 CISRQRSWGCPIPVIHCQKCGIVE 456 (869)
Q Consensus 433 ~ISRqr~WG~piPv~~~~~~~~~~ 456 (869)
++.|.-|+ |...|.+||.+.
T Consensus 426 flnRRGys----~~l~C~~Cg~v~ 445 (730)
T COG1198 426 FLNRRGYA----PLLLCRDCGYIA 445 (730)
T ss_pred EECCCCCC----CEEECCCCCCCC
T ss_conf 97167765----400425689802
No 159
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=25.52 E-value=31 Score=12.71 Aligned_cols=16 Identities=13% Similarity=0.596 Sum_probs=9.5
Q ss_pred HHHCCCCCCCCCCCCC
Q ss_conf 1101367644356432
Q gi|254780802|r 488 IFCVKCGSEALRETDT 503 (869)
Q Consensus 488 ~~~~~~~~~~~r~~dv 503 (869)
.|||.|.+++..-++|
T Consensus 342 ayCPHCDGPLF~gK~V 357 (520)
T COG3634 342 AYCPHCDGPLFKGKRV 357 (520)
T ss_pred EECCCCCCCCCCCCEE
T ss_conf 6688899865179647
No 160
>KOG2623 consensus
Probab=25.43 E-value=27 Score=13.11 Aligned_cols=39 Identities=23% Similarity=0.200 Sum_probs=23.5
Q ss_pred ECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 0474210000001222210012346335666553013321111
Q gi|254780802|r 625 IGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDI 667 (869)
Q Consensus 625 ~~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~~~~~~~~~~d~ 667 (869)
...|+|.-||-||.|+++--+ -++.-+|--+.+-+++|+
T Consensus 268 sstG~KlGKSaGnAvWLdp~~----tspy~lYQfF~~~pDd~v 306 (467)
T KOG2623 268 SSTGAKLGKSAGNAVWLDPSK----TSPYHLYQFFASLPDDDV 306 (467)
T ss_pred CCCCHHHCCCCCCEEEECCCC----CCCHHHHHHHHHCCHHHH
T ss_conf 575113234778628846766----881799999985864679
No 161
>KOG1359 consensus
Probab=25.35 E-value=34 Score=12.41 Aligned_cols=61 Identities=21% Similarity=0.392 Sum_probs=41.1
Q ss_pred CCCHH----------HHHHHHHHHCCCCCCEEECCCCCCCHHHHHCCCCEEEEEECCEEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 22343----------89999999828998355178866596786037714989973816679980888899999999974
Q gi|254780802|r 772 SPMIP----------HLAEECWQLLGNAGLVAQQKWPKLDPILEVNTDIILPIQVNGKKRACITVSMNTDDDFIKKTVLE 841 (869)
Q Consensus 772 aPi~P----------hiaEEiw~~Lg~~~~i~~~~WP~~d~~~~~~~~~~~~iqingk~r~~i~v~~~~~~~~i~~~~~~ 841 (869)
+||+| ..+.|+ |...-.|.--++|.+. .||-|-++.++..-+++.|++++.+
T Consensus 344 hPI~pv~lGda~lA~~~ad~l---Lk~Gi~Vigfs~PvVP---------------~gkariRVqiSAaHt~edid~~i~A 405 (417)
T KOG1359 344 HPICPVMLGDARLASKMADEL---LKRGIYVIGFSYPVVP---------------KGKARIRVQISAAHTEEDIDRLIEA 405 (417)
T ss_pred CCCCCEECCCHHHHHHHHHHH---HHCCCEEEEECCCCCC---------------CCCEEEEEEEEHHCCHHHHHHHHHH
T ss_conf 874232316388888889999---8557169862587678---------------8844799997010478889999999
Q ss_pred CHHHHHHHC
Q ss_conf 788899846
Q gi|254780802|r 842 LNVIKNILQ 850 (869)
Q Consensus 842 ~~~i~~~l~ 850 (869)
...+.+.++
T Consensus 406 f~~vgr~~~ 414 (417)
T KOG1359 406 FSEVGRFLN 414 (417)
T ss_pred HHHHHHHHC
T ss_conf 999887523
No 162
>TIGR02889 spore_YpeB germination protein YpeB; InterPro: IPR014239 Proteins in this entry include the sporulation protein YpeB from Bacillus subtilis. YpeB and the putative spore-cortex-lytic enzyme SleB are required for normal germination. These proteins appear to be restricted to endospore-forming species in the Firmicutes lineage of bacteria, and have been found in all such species to date except Clostridium perfringens. The matching phenotypes of mutants in SleB (called a lytic transglycosylase) and YpeB suggests that YpeB is necessary for SleB to function..
Probab=25.35 E-value=34 Score=12.40 Aligned_cols=17 Identities=24% Similarity=0.270 Sum_probs=9.4
Q ss_pred CCHHHHHHHHHHHHHHH
Q ss_conf 56466548889999740
Q gi|254780802|r 397 MTNTEALQAVMSHLEKQ 413 (869)
Q Consensus 397 ~~~~~~~~~i~~~l~~~ 413 (869)
++..||.+.+.+.+-+.
T Consensus 238 iS~~EA~~~~~~~~g~~ 254 (465)
T TIGR02889 238 ISKEEAKQIARDFLGDN 254 (465)
T ss_pred HHHHHHHHHHHHHCCCC
T ss_conf 21899999999854745
No 163
>TIGR00018 panC pantoate--beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis . Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway .; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process.
Probab=24.93 E-value=22 Score=13.71 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=13.6
Q ss_pred CCCEEECCCCCCCHHHHHCCC
Q ss_conf 983551788665967860377
Q gi|254780802|r 789 AGLVAQQKWPKLDPILEVNTD 809 (869)
Q Consensus 789 ~~~i~~~~WP~~d~~~~~~~~ 809 (869)
-+.|.+.++|+++|.-++..+
T Consensus 257 ~DY~~l~~~~~L~p~~~~~~~ 277 (310)
T TIGR00018 257 VDYVELVDADTLEPVSEIEPT 277 (310)
T ss_pred EEEEEECCCCCCCCCCCCCCC
T ss_conf 657874278766752133677
No 164
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=24.84 E-value=27 Score=13.09 Aligned_cols=30 Identities=13% Similarity=0.110 Sum_probs=17.3
Q ss_pred HHHHHHCCCEEECCEEEECCCCCCCCCCHHH
Q ss_conf 9999988963412213321477676778989
Q gi|254780802|r 141 FLDFMKHNVIVRKTAQVNWDPVEQTVLANEQ 171 (869)
Q Consensus 141 f~~L~~kGliyrg~~pV~wcp~~~t~la~~E 171 (869)
|....++|++.-..+ .+|||+|++.-..-+
T Consensus 9 F~~~~~~~~~lV~Fy-apWC~~Ck~~~P~w~ 38 (104)
T cd03000 9 FKDVRKEDIWLVDFY-APWCGHCKKLEPVWN 38 (104)
T ss_pred HHHHHCCCEEEEEEE-CCCCHHHHHCCHHHH
T ss_conf 878846992999998-998987982318999
No 165
>TIGR02652 TIGR02652 conserved hypothetical protein TIGR02652; InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N-terminus..
Probab=24.84 E-value=33 Score=12.56 Aligned_cols=18 Identities=11% Similarity=0.076 Sum_probs=11.5
Q ss_pred ECCCCCCCCCCHHHHHCC
Q ss_conf 214776767789898438
Q gi|254780802|r 158 NWDPVEQTVLANEQVING 175 (869)
Q Consensus 158 ~wcp~~~t~la~~Ev~~g 175 (869)
.=||+|++.++-.-+.|-
T Consensus 11 I~CPHCRQ~i~ALTLTDt 28 (172)
T TIGR02652 11 IRCPHCRQIIAALTLTDT 28 (172)
T ss_pred CCCCCCCCCHHHHHHHHH
T ss_conf 558854340023343234
No 166
>TIGR01011 rpsB_bact ribosomal protein S2; InterPro: IPR005706 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . This family describes the bacterial, mitochondrial and chloroplast forms of ribosomal protein S2.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015935 small ribosomal subunit.
Probab=24.56 E-value=33 Score=12.52 Aligned_cols=12 Identities=42% Similarity=0.504 Sum_probs=5.9
Q ss_pred HHHHCCCCCCCC
Q ss_conf 344014555443
Q gi|254780802|r 537 VDQYIGGIEHAV 548 (869)
Q Consensus 537 ~D~~i~g~d~~~ 548 (869)
+|+.|-|.|+++
T Consensus 196 vD~~IPgNDDai 207 (227)
T TIGR01011 196 VDYPIPGNDDAI 207 (227)
T ss_pred CCCCCCCCCCHH
T ss_conf 650257973058
No 167
>cd00736 bacteriophage_lambda_lysozyme The lysozyme from bacteriophage lambda hydrolyses the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetylglucosamine (GlcNAc), as do other lysozymes. But unlike other lysozymes, bacteriophage lambda does not produce a reducing end upon cleavage of the peptidoglycan but rather uses the 6-OH of the same MurNAc residue to produce a 1,6-anhydromuramic acid terminal residue and is therefore a lytic transglycosylase. An identical 1,6-anhydro bond is formed in bacterial peptidoglycans by the action of the lytic transglycosylases of E. coli. However, they differ structurally.
Probab=24.41 E-value=36 Score=12.29 Aligned_cols=60 Identities=13% Similarity=0.181 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 21011455677889999976302466789756999999999999999998816889999999
Q gi|254780802|r 672 KGVDSTYQFIQQIWRLIYNAKDELQTSSTKKDISLISKSTKFLERIEENYQNLSFNKAVANI 733 (869)
Q Consensus 672 ~~i~~~~rfl~kl~~l~~~~~~~~~~~~~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai~~i 733 (869)
....+-|+||.++|.-......-.+..+...|+..+..+.+. .+-..+++=++.+|++.+
T Consensus 61 StAAGrYQfl~~TW~~~~~~l~l~dF~P~~QD~~Al~li~~r--gal~~i~~G~~~~ai~kl 120 (151)
T cd00736 61 STAAGRYQFLSRTWDAYAKQYGLYDFSPESQDLVAYQLIRER--GALPDILAGRIEQAIAKL 120 (151)
T ss_pred CCHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHC--CCHHHHHCCCHHHHHHHH
T ss_conf 623300032598999999864999999278999999999972--866878766899999984
No 168
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family; InterPro: IPR011911 Glutaredoxins , , , also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system . Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond . It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon . Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system..
Probab=23.73 E-value=19 Score=14.15 Aligned_cols=10 Identities=20% Similarity=0.408 Sum_probs=7.2
Q ss_pred EEEECCCCCC
Q ss_conf 1332147767
Q gi|254780802|r 155 AQVNWDPVEQ 164 (869)
Q Consensus 155 ~pV~wcp~~~ 164 (869)
+.++|||-|+
T Consensus 5 Yt~~~Cp~C~ 14 (79)
T TIGR02196 5 YTTPWCPPCK 14 (79)
T ss_pred EEECCCCCHH
T ss_conf 7408982078
No 169
>pfam12621 DUF3779 Phosphate metabolism protein. This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with pfam02714. There are two completely conserved residues (W and D) that may be functionally important. This family is likely to be involved in phosphate metabolism however there is little accompanying literature to confirm this.
Probab=23.19 E-value=38 Score=12.13 Aligned_cols=24 Identities=17% Similarity=0.374 Sum_probs=20.1
Q ss_pred EECCEEEECCCCCCCCCCHHHHHC
Q ss_conf 412213321477676778989843
Q gi|254780802|r 151 VRKTAQVNWDPVEQTVLANEQVIN 174 (869)
Q Consensus 151 yrg~~pV~wcp~~~t~la~~Ev~~ 174 (869)
.++..|+.|.|++.-.+|..||+.
T Consensus 41 v~~~~P~lWIPrD~~GvS~~ei~~ 64 (95)
T pfam12621 41 VTAPPPLLWIPRDPMGLSRQEIEH 64 (95)
T ss_pred CCCCCCEEEEECCCCCCCHHHHHH
T ss_conf 268998588546977758999999
No 170
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=22.96 E-value=21 Score=13.88 Aligned_cols=19 Identities=5% Similarity=-0.144 Sum_probs=13.8
Q ss_pred CEEECCEEEECCCCCCCCC
Q ss_conf 6341221332147767677
Q gi|254780802|r 149 VIVRKTAQVNWDPVEQTVL 167 (869)
Q Consensus 149 liyrg~~pV~wcp~~~t~l 167 (869)
++...+-|-.|||-|+.-.
T Consensus 8 ylr~~~~P~~wCpGCG~g~ 26 (281)
T PRK09628 8 YLRVDKMPTLWCWGCGDGV 26 (281)
T ss_pred HHCCCCCCCCCCCCCCCHH
T ss_conf 8335689988788997689
No 171
>smart00836 DALR_1 DALR anticodon binding domain. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids PUBMED:10447505.
Probab=22.76 E-value=38 Score=12.08 Aligned_cols=48 Identities=13% Similarity=0.211 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 975699999999999999999881688999999999999999999862
Q gi|254780802|r 700 TKKDISLISKSTKFLERIEENYQNLSFNKAVANIHELVNVISKPLMEI 747 (869)
Q Consensus 700 ~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai~~i~~f~n~ls~~y~~~ 747 (869)
.+.++.++..+.+.-.-+..+.++++.+..+.-++++.+.|+++|-..
T Consensus 35 ~~~E~~Li~~l~~f~~vl~~a~~~~~P~~l~~Yl~~La~~f~~fY~~~ 82 (122)
T smart00836 35 EPEELALLRLLARFPEVLEAAAETLEPHRLANYLYDLASAFHSFYNKC 82 (122)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999999778999999997695899999999999999998438
No 172
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=22.49 E-value=29 Score=12.89 Aligned_cols=18 Identities=11% Similarity=0.124 Sum_probs=10.9
Q ss_pred EECCEEEECCCCCCCCCC
Q ss_conf 412213321477676778
Q gi|254780802|r 151 VRKTAQVNWDPVEQTVLA 168 (869)
Q Consensus 151 yrg~~pV~wcp~~~t~la 168 (869)
|+....+.|||-|+.-.-
T Consensus 10 ~~~~~~~~wCPGCG~~~i 27 (280)
T PRK11867 10 FLRDQEPRWCPGCGDGAI 27 (280)
T ss_pred HCCCCCCCCCCCCCCHHH
T ss_conf 467999716899954999
No 173
>KOG0614 consensus
Probab=22.49 E-value=39 Score=12.04 Aligned_cols=22 Identities=23% Similarity=0.218 Sum_probs=14.7
Q ss_pred EEEEEECCCCCCCCCEEEEECC
Q ss_conf 6532001344432320033024
Q gi|254780802|r 248 ILVYTTRPETIFGASFIAIAVD 269 (869)
Q Consensus 248 l~~~TtrPeTl~g~~~i~v~~~ 269 (869)
-+..|-.|+|+||--++..|..
T Consensus 213 ~ll~~m~~gtvFGELAILynct 234 (732)
T KOG0614 213 KLLGKMGAGTVFGELAILYNCT 234 (732)
T ss_pred EEEECCCCCHHHHHHHHHHCCC
T ss_conf 6663147721456789985784
No 174
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=22.46 E-value=30 Score=12.81 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=11.6
Q ss_pred HHHHHHCCCHHHHHHHHHHHCCC
Q ss_conf 99999722343899999998289
Q gi|254780802|r 766 KLIIMMSPMIPHLAEECWQLLGN 788 (869)
Q Consensus 766 ~l~~lLaPi~PhiaEEiw~~Lg~ 788 (869)
.+..||||..-.+--|+-+.|++
T Consensus 364 DlfMM~hP~sV~vlkei~~tl~~ 386 (403)
T COG2069 364 DLFMMMHPTSVAVLKEIGETLTG 386 (403)
T ss_pred CHHHHHCHHHHHHHHHHHHHHHC
T ss_conf 05542178899999999998725
No 175
>KOG2713 consensus
Probab=22.19 E-value=39 Score=12.00 Aligned_cols=12 Identities=58% Similarity=0.639 Sum_probs=8.9
Q ss_pred CCCCCHHHCCCC
Q ss_conf 742100000012
Q gi|254780802|r 627 PLEKMSKSKKNV 638 (869)
Q Consensus 627 ~g~KMSKSkGNv 638 (869)
..+|||||-+|-
T Consensus 208 pekKMSKSd~n~ 219 (347)
T KOG2713 208 PEKKMSKSDPNP 219 (347)
T ss_pred HHHHCCCCCCCC
T ss_conf 355414579997
No 176
>TIGR02902 spore_lonB ATP-dependent protease LonB; InterPro: IPR014251 This entry represents LonB, a paralog of the ATP-dependent protease La (LonA, IPR004815 from INTERPRO). LonB proteins are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ) and are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore during sporulation, under control of sigmaF . The lonB gene, despite being located immediately upstream of lonA, was shown to be monocistronic. LonB appears to be involved in the post-translation control of sigmaH, but lonB mutation did not produce an obvious sporulation defect under the conditions tested . Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and these are excluded from this entry. .
Probab=22.14 E-value=37 Score=12.20 Aligned_cols=35 Identities=23% Similarity=0.450 Sum_probs=18.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCC-HHHHHHHCCCHHHHCCCC
Q ss_conf 566643332233555654410-135664114334401455
Q gi|254780802|r 506 TFVDSSWYYMRYMTPHAKDPI-NKELVRQWFPVDQYIGGI 544 (869)
Q Consensus 506 ~w~dS~~~~~~~~~~~~~~~~-~~e~~~~~~P~D~~i~g~ 544 (869)
+++||..|... ..+-|. =+|.|+.=|||||++=|.
T Consensus 204 VFLdSAYY~s~----~pniP~hI~dIFqnGlPADFRLiGA 239 (532)
T TIGR02902 204 VFLDSAYYSSE----DPNIPSHIRDIFQNGLPADFRLIGA 239 (532)
T ss_pred CHHHCCCCCCC----CCCCCHHHHHHHCCCCCCCEECCCC
T ss_conf 00001235877----7865427899720678734012133
No 177
>TIGR01127 ilvA_1Cterm threonine dehydratase; InterPro: IPR005789 Serine and threonine dehydratases , are functionally and structurally related pyridoxal-phosphate dependent enzymes. L-serine dehydratase () and D-serine dehydratase () catalyze the dehydratation of L-serine (respectively D-serine) into ammonia and pyruvate. Threonine dehydratase () (TDH) catalyzes the dehydratation of threonine into alpha-ketobutarate and ammonia. In Escherichia coli and other microorganisms, two classes of TDH are known to exist. One is involved in the biosynthesis of isoleucine, the other in hydroxamino acid catabolism. Threonine synthase () is also a pyridoxal-phosphate enzyme, it catalyzes the transformation of homoserine-phosphate into threonine. It has been shown that threonine synthase is distantly related to the serine/threonine dehydratases. In all these enzymes, the pyridoxal-phosphate group is attached to a lysine residue. A form of threonine dehydratase with two copies of the C-terminal domain is described by . This model describes a phylogenetically distinct which branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any domain. Many members of this model are found in species with other isoleucine biosynthetic enzymes.; GO: 0004794 L-threonine ammonia-lyase activity.
Probab=21.56 E-value=33 Score=12.50 Aligned_cols=64 Identities=16% Similarity=0.187 Sum_probs=27.8
Q ss_pred CCCCCCEEEEECCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHH-HHHHCCCCCCCCCEECCCCCCCEEE
Q ss_conf 4432320033024432034541314589998865311112455-5430255323786103777774157
Q gi|254780802|r 257 TIFGASFIAIAVDHSISEKLSCDNTDIKEFCDEEKQKGTSLSV-LDKTEKKGIYTGIHVKHPLNPNVVI 324 (869)
Q Consensus 257 Tl~g~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~G~~~~~P~~~~~~i 324 (869)
-.||..+..|.|+..-..++.+.... -++.-..|..+.. ....+.-..-.|..+.|||++++++
T Consensus 68 ~~~Gi~a~IVMPE~aP~~Kv~AT~~y----GAEViL~G~~~DEA~~~A~~~~~~~g~~fvHpF~D~~vm 132 (381)
T TIGR01127 68 KVFGIKAKIVMPEYAPLSKVKATKSY----GAEVILHGADYDEAYALAEELAEEEGRVFVHPFDDEYVM 132 (381)
T ss_pred HHCCCCCEEECCCCCHHHHHHHHHHC----CCEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCCCEEE
T ss_conf 76187746878876735789997626----961898088707899999999986098787405887786
No 178
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA; InterPro: IPR014072 The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases..
Probab=21.21 E-value=41 Score=11.87 Aligned_cols=16 Identities=13% Similarity=0.167 Sum_probs=6.7
Q ss_pred CCCCCCEEEEECCCCC
Q ss_conf 4432320033024432
Q gi|254780802|r 257 TIFGASFIAIAVDHSI 272 (869)
Q Consensus 257 Tl~g~~~i~v~~~~~~ 272 (869)
+-|++.-|=+++|.|+
T Consensus 56 ~~F~~~~Ve~~ANsPF 71 (176)
T TIGR02699 56 EDFDDLRVEINANSPF 71 (176)
T ss_pred HHCCCEEEEECCCCCC
T ss_conf 3106405870786781
No 179
>pfam05746 DALR_1 DALR anticodon binding domain. This all alpha helical domain is the anticodon binding domain in Arginyl and glycyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids.
Probab=20.65 E-value=42 Score=11.79 Aligned_cols=48 Identities=15% Similarity=0.203 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 975699999999999999999881688999999999999999999862
Q gi|254780802|r 700 TKKDISLISKSTKFLERIEENYQNLSFNKAVANIHELVNVISKPLMEI 747 (869)
Q Consensus 700 ~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai~~i~~f~n~ls~~y~~~ 747 (869)
.+.++.++..+.+.-.-+.++.++++-+..+.-++++.+.++++|-..
T Consensus 31 ~~~E~~Li~~l~~f~~~l~~a~~~~~P~~l~~Yl~~La~~f~~fY~~~ 78 (117)
T pfam05746 31 EEEEKELLKALLQFPEVVEEAAEELEPHRLANYLYDLASAFHSFYNNC 78 (117)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999880529999999986686999999999999999999719
No 180
>TIGR01393 lepA GTP-binding protein LepA; InterPro: IPR006297 LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function of the proteins in this family are unknown. ; GO: 0005525 GTP binding.
Probab=20.33 E-value=43 Score=11.75 Aligned_cols=57 Identities=25% Similarity=0.306 Sum_probs=34.8
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCHHHC-------CCCCCCCCCHHHCCCCHHHHHHHHHHHHH
Q ss_conf 22103544321016776555422211210-------12334458300013564665488899997
Q gi|254780802|r 354 FAKKYGLPIIPIMKRSINHSQDIEEGKAF-------SGDGIMINSSFLDGMTNTEALQAVMSHLE 411 (869)
Q Consensus 354 ~~~k~glpi~~v~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~i~~~l~ 411 (869)
++-+++|+|+||+++=.-++.+++.-... .....+.-|.. .|.-.++.+++|++.+-
T Consensus 118 lAlE~dLeIIPViNKIDLP~Adpe~v~~eIe~~iGld~~~ai~~SAK-tG~Gi~e~LEaIv~~vP 181 (598)
T TIGR01393 118 LALENDLEIIPVINKIDLPSADPERVKKEIEEVIGLDASEAILASAK-TGIGIEEILEAIVKRVP 181 (598)
T ss_pred HHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEC-CCCCHHHHHHHHHHCCC
T ss_conf 87561875847782536888885899998765418896430387503-67888999889710181
Done!