Query         gi|254780802|ref|YP_003065215.1| leucyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 869
No_of_seqs    178 out of 5707
Neff          8.2 
Searched_HMMs 39220
Date          Sun May 29 19:16:30 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780802.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 TIGR00396 leuS_bact leucyl-tRN 100.0       0       0 1752.9  49.5  851    6-869     1-915 (916)
  2 PRK00390 leuS leucyl-tRNA synt 100.0       0       0 1734.2  57.9  817    4-869     3-821 (822)
  3 COG0495 LeuS Leucyl-tRNA synth 100.0       0       0 1509.8  48.8  801    4-869     3-814 (814)
  4 TIGR00422 valS valyl-tRNA synt 100.0       0       0 1330.4  44.9  658    3-803     2-822 (970)
  5 PRK06039 ileS isoleucyl-tRNA s 100.0       0       0 1312.7  41.6  693    3-804     2-793 (1042)
  6 KOG0435 consensus              100.0       0       0 1310.5  36.6  815    8-869    32-866 (876)
  7 TIGR00392 ileS isoleucyl-tRNA  100.0       0       0 1310.1  26.3  715    2-804     2-887 (938)
  8 PRK05729 valS valyl-tRNA synth 100.0       0       0 1252.0  44.4  636    3-803     4-714 (877)
  9 PRK05743 ileS isoleucyl-tRNA s 100.0       0       0 1247.0  43.0  679    4-801    17-786 (910)
 10 PRK13208 valS valyl-tRNA synth 100.0       0       0 1233.3  44.4  640    3-804     6-728 (809)
 11 COG0060 IleS Isoleucyl-tRNA sy 100.0       0       0 1233.5  33.6  693    4-804    16-799 (933)
 12 PRK13804 ileS isoleucyl-tRNA s 100.0       0       0 1226.3  38.6  681    4-801    22-828 (966)
 13 COG0525 ValS Valyl-tRNA synthe 100.0       0       0 1201.5  44.8  628    3-803     2-714 (877)
 14 PRK12300 leuS leucyl-tRNA synt 100.0       0       0 1094.9  39.8  670   49-862     1-781 (888)
 15 TIGR00395 leuS_arch leucyl-tRN 100.0       0       0 1108.1  26.9  716   10-804     2-924 (1109)
 16 pfam00133 tRNA-synt_1 tRNA syn 100.0       0       0 1054.1  28.4  546   14-670     1-606 (606)
 17 KOG0432 consensus              100.0       0       0  932.3  38.5  657    3-808    43-838 (995)
 18 KOG0433 consensus              100.0       0       0  899.0  31.0  689    6-804    30-814 (937)
 19 KOG0434 consensus              100.0       0       0  885.4  32.2  689    4-805     6-812 (1070)
 20 KOG0437 consensus              100.0       0       0  738.7  26.0  704    7-802    13-884 (1080)
 21 PRK12268 methionyl-tRNA synthe 100.0       0       0  614.5  31.0  495   34-799     3-521 (558)
 22 PRK11893 methionyl-tRNA synthe 100.0       0       0  606.8  34.6  454   34-790     1-479 (512)
 23 PRK12267 methionyl-tRNA synthe 100.0       0       0  582.0  33.5  455   33-790     3-480 (644)
 24 PRK00133 metG methionyl-tRNA s 100.0       0       0  564.7  31.6  474   34-789     2-504 (666)
 25 cd00817 ValRS_core This is the 100.0       0       0  571.4  17.0  346   34-669     1-363 (363)
 26 cd00812 LeuRS_core This is the 100.0       0       0  535.1  20.3  347   35-669     1-376 (376)
 27 cd00818 IleRS_core This is the 100.0       0       0  530.4  17.0  322   34-669     1-339 (339)
 28 pfam09334 tRNA-synt_1g tRNA sy 100.0       0       0  508.3  21.9  376   36-691     1-387 (388)
 29 cd00668 Ile_Leu_Val_MetRS_core 100.0       0       0  508.3  18.1  324   35-669     1-334 (334)
 30 TIGR00398 metG methionyl-tRNA  100.0       0       0  492.1  29.5  488   36-789     1-541 (573)
 31 COG0143 MetG Methionyl-tRNA sy 100.0       0       0  488.3  32.2  488   32-797     3-521 (558)
 32 cd00814 MetRS_core This is the 100.0       0       0  351.0  19.7  132   35-168     1-132 (319)
 33 KOG0436 consensus              100.0       0       0  335.4  24.7  471   32-797    37-537 (578)
 34 KOG1247 consensus              100.0 5.4E-32 1.4E-36  237.3  21.6  490   30-794    10-526 (567)
 35 pfam01406 tRNA-synt_1e tRNA sy 100.0 3.5E-33   9E-38  245.4  13.9  125   25-155     2-126 (301)
 36 PRK00260 cysS cysteinyl-tRNA s 100.0 2.2E-26 5.5E-31  198.9  23.4  125   32-161    22-146 (460)
 37 cd07961 Anticodon_Ia_Ile_ABEc   99.9 2.8E-26   7E-31  198.1  13.6  136  669-804     1-163 (183)
 38 COG0215 CysS Cysteinyl-tRNA sy  99.9 3.4E-22 8.7E-27  170.1  18.8  122   36-161    23-146 (464)
 39 cd07960 Anticodon_Ia_Ile_BEm A  99.9 3.4E-23 8.7E-28  177.0  13.3  132  672-803     4-159 (180)
 40 cd07958 Anticodon_Ia_Leu_BEm A  99.9 1.1E-22 2.9E-27  173.3  12.9  112  669-786     1-117 (117)
 41 cd07962 Anticodon_Ia_Val Antic  99.9   2E-22   5E-27  171.7  13.1  118  669-786     1-135 (135)
 42 PRK12418 cysteinyl-tRNA synthe  99.9 1.3E-20 3.4E-25  159.2  19.4  116   36-154    10-125 (384)
 43 TIGR03447 mycothiol_MshC cyste  99.9 1.2E-20   3E-25  159.5  19.1  115   38-155    39-153 (411)
 44 pfam08264 Anticodon_1 Anticodo  99.9 1.9E-21 4.9E-26  164.9  12.6  100  703-802     1-108 (148)
 45 cd07959 Anticodon_Ia_Leu_AEc A  99.8   9E-19 2.3E-23  146.6  13.1  114  669-786     1-117 (117)
 46 KOG2007 consensus               99.8   8E-17 2.1E-21  133.3  20.9  129  619-748   294-428 (586)
 47 cd07375 Anticodon_Ia_like Anti  99.6 2.5E-15 6.5E-20  123.0  11.6  104  671-775     1-117 (117)
 48 TIGR00435 cysS cysteinyl-tRNA   99.5   1E-13 2.6E-18  111.9   9.1  127  615-742   398-538 (660)
 49 cd00802 class_I_aaRS_core Clas  99.4 3.1E-13 7.9E-18  108.7   4.5   73   37-114     1-73  (142)
 50 cd07957 Anticodon_Ia_Met Antic  99.4 2.5E-11 6.3E-16   95.6  12.8  117  670-786     2-129 (129)
 51 TIGR00395 leuS_arch leucyl-tRN  99.2 4.4E-12 1.1E-16  100.8   1.1  179  397-607   555-756 (1109)
 52 COG0018 ArgS Arginyl-tRNA synt  99.0 1.7E-08 4.3E-13   76.2  14.4  122  626-748   379-538 (577)
 53 PRK01611 argS arginyl-tRNA syn  99.0 5.9E-08 1.5E-12   72.5  14.6  120  626-746   373-529 (570)
 54 PRK12451 arginyl-tRNA syntheta  98.9 4.9E-08 1.3E-12   73.0  11.4  120  626-746   367-523 (562)
 55 cd00672 CysRS_core This is the  98.8 8.3E-10 2.1E-14   85.2   0.6   87   34-120    19-105 (213)
 56 pfam00750 tRNA-synt_1d tRNA sy  98.8 7.4E-08 1.9E-12   71.8   9.8   59   33-91     18-76  (345)
 57 cd00672 CysRS_core This is the  98.7 4.3E-08 1.1E-12   73.4   7.3   49  621-670   165-213 (213)
 58 PRK01611 argS arginyl-tRNA syn  98.6 4.7E-07 1.2E-11   66.3  10.4  119   32-154   116-283 (570)
 59 PRK12451 arginyl-tRNA syntheta  98.6   1E-06 2.6E-11   64.0  11.5  121   32-156   111-283 (562)
 60 PRK00750 lysK lysyl-tRNA synth  98.5 1.3E-06 3.4E-11   63.2   8.9   63  623-685   278-342 (513)
 61 TIGR00456 argS arginyl-tRNA sy  98.4 6.3E-06 1.6E-10   58.6  11.4  204  539-772   353-593 (600)
 62 COG0018 ArgS Arginyl-tRNA synt  98.4 6.4E-06 1.6E-10   58.5  10.8  151    7-160    89-296 (577)
 63 cd00671 ArgRS_core This is the  98.4 2.9E-06 7.3E-11   60.9   9.0   54   38-91      4-57  (267)
 64 KOG0437 consensus               98.3 9.3E-08 2.4E-12   71.1   0.3  150  423-605   559-726 (1080)
 65 cd00674 LysRS_core_class_I Thi  98.3 3.3E-07 8.3E-12   67.4   2.7   50   32-82     17-66  (354)
 66 TIGR00456 argS arginyl-tRNA sy  98.3 1.8E-06 4.6E-11   62.3   6.0   66   11-76     95-160 (600)
 67 COG0495 LeuS Leucyl-tRNA synth  98.1 6.8E-08 1.7E-12   72.1  -3.8  102  248-356   208-312 (814)
 68 PRK04156 gltX glutamyl-tRNA sy  98.1 2.2E-05 5.6E-10   54.9   8.5   98   34-153    98-197 (566)
 69 pfam01921 tRNA-synt_1f tRNA sy  98.0 4.2E-06 1.1E-10   59.8   3.6   49   33-82     18-66  (355)
 70 cd00807 Gln_GluRS_non_core Glu  98.0 1.4E-05 3.5E-10   56.2   5.9   90   38-151     3-94  (238)
 71 COG1384 LysS Lysyl-tRNA synthe  97.9 0.00015 3.9E-09   49.1   9.8   58  626-684   273-335 (521)
 72 COG0008 GlnS Glutamyl- and glu  97.8 5.7E-05 1.5E-09   52.0   5.9   93   37-153    10-105 (472)
 73 pfam00749 tRNA-synt_1c tRNA sy  97.8 7.6E-05 1.9E-09   51.2   6.4   92   39-152     4-96  (314)
 74 cd00418 GlxRS_core Glutamyl-tR  97.8 6.3E-05 1.6E-09   51.7   5.6   86   39-148     4-92  (223)
 75 pfam01921 tRNA-synt_1f tRNA sy  97.7 0.00014 3.6E-09   49.3   7.2   51  623-674   271-321 (355)
 76 TIGR00463 gltX_arch glutamyl-t  97.7 1.1E-05 2.9E-10   56.8   1.3  110   35-176   100-213 (600)
 77 cd00674 LysRS_core_class_I Thi  97.7 0.00014 3.6E-09   49.3   6.9   48  623-671   268-316 (354)
 78 PRK05347 glutaminyl-tRNA synth  97.7 0.00024 6.2E-09   47.7   7.4   96   33-152    26-124 (556)
 79 PRK05710 glutamyl-Q tRNA(Asp)   97.6 9.7E-05 2.5E-09   50.4   4.8   92   38-151     6-98  (299)
 80 PRK12410 glutamyl-tRNA synthet  97.6 0.00028 7.1E-09   47.3   6.7   87   42-152     5-93  (433)
 81 PRK00750 lysK lysyl-tRNA synth  97.6 0.00057 1.5E-08   45.2   8.2   89   36-124    30-138 (513)
 82 PRK12558 glutamyl-tRNA synthet  97.5 0.00039 9.9E-09   46.3   6.4   89   42-152     8-96  (461)
 83 TIGR00435 cysS cysteinyl-tRNA   97.1 0.00011 2.9E-09   50.0   0.6  109   42-172    29-148 (660)
 84 pfam00750 tRNA-synt_1d tRNA sy  97.1 0.00018 4.5E-09   48.7   1.2   46  624-670   273-344 (345)
 85 cd00802 class_I_aaRS_core Clas  97.1 0.00026 6.6E-09   47.5   1.8   63  503-584    71-133 (142)
 86 PRK01406 gltX glutamyl-tRNA sy  96.9  0.0039 9.8E-08   39.5   6.3   89   42-152     8-97  (467)
 87 cd00808 GluRS_core Descriminat  96.8  0.0011 2.8E-08   43.3   3.0   63   41-121     6-68  (239)
 88 COG1384 LysS Lysyl-tRNA synthe  96.8  0.0064 1.6E-07   37.9   6.9   89   34-123    19-126 (521)
 89 PRK12284 tryptophanyl-tRNA syn  96.7  0.0063 1.6E-07   38.0   6.4   29  626-659   198-226 (436)
 90 TIGR00440 glnS glutaminyl-tRNA  96.5  0.0033 8.5E-08   39.9   3.8  106   41-179     5-110 (564)
 91 cd02156 nt_trans nt_trans (nuc  96.4  0.0013 3.2E-08   42.8   1.3   73   41-123     2-74  (147)
 92 PRK12556 tryptophanyl-tRNA syn  96.3   0.079   2E-06   30.5  12.7   27  626-657   197-223 (328)
 93 TIGR00392 ileS isoleucyl-tRNA   96.3  0.0055 1.4E-07   38.4   4.3   53  109-161    28-84  (938)
 94 PRK00574 gltX glutamyl-tRNA sy  96.3   0.014 3.6E-07   35.6   6.4   90   42-153    10-108 (489)
 95 cd07956 Anticodon_Ia_Arg Antic  96.1    0.11 2.7E-06   29.6  10.7  101  646-747     1-117 (156)
 96 KOG4426 consensus               96.0    0.12 3.1E-06   29.2   9.7   46  703-748   567-613 (656)
 97 PRK12283 tryptophanyl-tRNA syn  95.9    0.13 3.3E-06   29.0  11.5   28  627-659   261-288 (398)
 98 KOG1147 consensus               95.8   0.069 1.8E-06   30.9   7.9  109   37-175   201-309 (712)
 99 PRK12282 tryptophanyl-tRNA syn  95.6    0.16 4.2E-06   28.3  11.0   25  629-658   195-219 (333)
100 KOG1148 consensus               95.5   0.083 2.1E-06   30.3   7.3   96   36-160   248-345 (764)
101 COG0060 IleS Isoleucyl-tRNA sy  95.4   0.016 4.1E-07   35.2   3.3   45  392-436   366-422 (933)
102 PRK06039 ileS isoleucyl-tRNA s  94.5   0.034 8.7E-07   33.0   3.0   19  589-607   594-612 (1042)
103 PRK08560 tyrosyl-tRNA syntheta  93.8    0.24 6.2E-06   27.1   6.2   17  628-644   218-235 (333)
104 PRK13354 tyrosyl-tRNA syntheta  93.4   0.034 8.8E-07   33.0   1.4   19  625-643   224-243 (405)
105 PRK00927 tryptophanyl-tRNA syn  93.4    0.53 1.4E-05   24.8   9.7   27  627-658   189-218 (325)
106 PRK13354 tyrosyl-tRNA syntheta  92.9    0.42 1.1E-05   25.5   6.2   78   33-116    35-115 (405)
107 KOG1195 consensus               92.8    0.64 1.6E-05   24.2  11.2  109  639-748   404-529 (567)
108 PRK12300 leuS leucyl-tRNA synt  92.7   0.063 1.6E-06   31.2   1.9   46  425-478   355-400 (888)
109 PRK13208 valS valyl-tRNA synth  92.6    0.11 2.8E-06   29.6   2.9   18  589-606   538-555 (809)
110 cd00805 TyrRS_core Tyrosinyl-t  92.5   0.056 1.4E-06   31.5   1.3   15  626-640   190-204 (268)
111 cd00805 TyrRS_core Tyrosinyl-t  92.3    0.42 1.1E-05   25.5   5.6   76   45-125     9-87  (268)
112 KOG0434 consensus               91.3    0.15 3.8E-06   28.6   2.4  102  122-225   309-450 (1070)
113 PRK13804 ileS isoleucyl-tRNA s  91.0    0.27   7E-06   26.8   3.5   18  589-606   636-653 (966)
114 COG0180 TrpS Tryptophanyl-tRNA  91.0     0.1 2.7E-06   29.7   1.4   17  627-643   194-212 (314)
115 PRK05912 tyrosyl-tRNA syntheta  90.6    0.42 1.1E-05   25.5   4.1   17  627-643   222-239 (402)
116 PRK05729 valS valyl-tRNA synth  90.6    0.36 9.2E-06   26.0   3.8   17  589-605   522-538 (877)
117 PRK12285 tryptophanyl-tRNA syn  89.9     1.3 3.2E-05   22.2   9.3   15  627-641   250-265 (369)
118 PRK08560 tyrosyl-tRNA syntheta  89.2     0.2 5.2E-06   27.7   1.6  104   32-150    27-132 (333)
119 COG0525 ValS Valyl-tRNA synthe  89.0    0.45 1.1E-05   25.3   3.3   15  590-604   526-540 (877)
120 TIGR00422 valS valyl-tRNA synt  88.1    0.43 1.1E-05   25.4   2.7   65  212-281   232-304 (970)
121 pfam00579 tRNA-synt_1b tRNA sy  87.5    0.59 1.5E-05   24.5   3.1   18  627-644   193-212 (291)
122 cd00806 TrpRS_core Tryptophany  87.2     1.9 4.8E-05   21.1   5.6   20  536-556   138-157 (282)
123 cd00395 Tyr_Trp_RS_core Tyrosi  86.8     1.1 2.7E-05   22.8   4.1   26  629-659   186-212 (274)
124 COG0162 TyrS Tyrosyl-tRNA synt  86.5    0.74 1.9E-05   23.8   3.2   14  626-639   220-233 (401)
125 PTZ00126 tyrosyl-tRNA syntheta  86.4     1.5 3.8E-05   21.7   4.7   21  533-553   223-243 (399)
126 COG0143 MetG Methionyl-tRNA sy  85.3    0.29 7.3E-06   26.7   0.6   41  166-206   164-204 (558)
127 TIGR00464 gltX_bact glutamyl-t  84.2    0.46 1.2E-05   25.3   1.2   92   43-153     8-105 (513)
128 TIGR00467 lysS_arch lysyl-tRNA  81.3     3.3 8.5E-05   19.4   4.8   63  627-689   279-342 (539)
129 TIGR00233 trpS tryptophanyl-tR  71.2     2.4 6.1E-05   20.3   1.7   16  628-643   221-239 (366)
130 TIGR02220 phg_TIGR02220 phage   63.8     3.3 8.4E-05   19.4   1.2   36  213-262    40-75  (83)
131 pfam01927 DUF82 Protein of unk  62.7     4.5 0.00012   18.4   1.7   89   63-168    12-101 (146)
132 CHL00040 rbcL ribulose-1,5-bis  62.3       9 0.00023   16.4   3.5   18  705-722   443-460 (477)
133 TIGR00381 cdhD CO dehydrogenas  61.7     9.3 0.00024   16.3   3.4   11  660-670   331-341 (401)
134 pfam01314 AFOR_C Aldehyde ferr  57.0      11 0.00028   15.8   3.5   12  668-679   297-308 (382)
135 COG5270 PUA domain (predicted   55.9     3.9 9.8E-05   18.9   0.4   26  145-170     2-27  (202)
136 TIGR02295 HpaD 3,4-dihydroxyph  55.3       4  0.0001   18.8   0.4   22  278-299    69-90  (312)
137 cd07963 Anticodon_Ia_Cys Antic  54.5      12 0.00031   15.5   9.0   64  671-743     1-65  (156)
138 KOG1149 consensus               51.9      12 0.00031   15.5   2.4   21  764-784   439-459 (524)
139 PRK11866 2-oxoacid ferredoxin   51.1     5.3 0.00014   18.0   0.5   16  150-165     8-23  (286)
140 KOG3361 consensus               50.1     6.4 0.00016   17.4   0.8   19  330-349    47-65  (157)
141 TIGR01316 gltA glutamate synth  49.0     6.2 0.00016   17.5   0.5   27  394-420   315-341 (462)
142 PRK13794 hypothetical protein;  47.9      12 0.00031   15.4   1.9   33  149-186     2-34  (473)
143 TIGR01828 pyru_phos_dikin pyru  47.6      15 0.00039   14.8   6.1   37  821-857   747-784 (920)
144 PRK13795 hypothetical protein;  46.5      11 0.00029   15.7   1.6   33  148-185     3-35  (630)
145 PRK11869 2-oxoacid ferredoxin   46.3     7.2 0.00018   17.0   0.5   17  149-165     4-20  (284)
146 TIGR01405 polC_Gram_pos DNA po  46.0      16 0.00041   14.6   2.6   69  309-377   705-778 (1264)
147 smart00531 TFIIE Transcription  39.8      20 0.00051   14.0   2.6   15  158-172   100-114 (147)
148 pfam04405 ScdA_N Domain of Unk  36.9      22 0.00057   13.7   2.0   47   56-102     2-49  (56)
149 TIGR00357 TIGR00357 methionine  34.2      11 0.00029   15.7   0.0   21  490-514    43-65  (135)
150 COG1656 Uncharacterized conser  33.5      20 0.00051   14.0   1.2   19   63-81     18-37  (165)
151 pfam07223 DUF1421 Protein of u  31.8      19 0.00048   14.2   0.8   40  632-671   313-357 (359)
152 pfam06172 Cupin_5 Cupin superf  29.8      29 0.00073   12.9   2.1   30  327-356   108-139 (139)
153 TIGR02199 rfaE_dom_II rfaE bif  29.7      18 0.00047   14.3   0.5   15  392-406   128-142 (144)
154 pfam02744 GalP_UDP_tr_C Galact  28.9      30 0.00076   12.8   2.3   11  341-351   100-110 (168)
155 pfam11931 DUF3449 Domain of un  28.7      17 0.00044   14.5   0.1   14  630-643   165-178 (187)
156 COG4905 Predicted membrane pro  28.5      24  0.0006   13.5   0.8   28  135-162    14-45  (243)
157 pfam05527 DUF758 Domain of unk  28.4      30 0.00077   12.8   9.0   75  665-739    75-149 (186)
158 COG1198 PriA Primosomal protei  25.6      34 0.00087   12.4   3.5   20  433-456   426-445 (730)
159 COG3634 AhpF Alkyl hydroperoxi  25.5      31 0.00079   12.7   1.0   16  488-503   342-357 (520)
160 KOG2623 consensus               25.4      27 0.00069   13.1   0.7   39  625-667   268-306 (467)
161 KOG1359 consensus               25.4      34 0.00087   12.4   5.4   61  772-850   344-414 (417)
162 TIGR02889 spore_YpeB germinati  25.3      34 0.00087   12.4   3.9   17  397-413   238-254 (465)
163 TIGR00018 panC pantoate--beta-  24.9      22 0.00056   13.7   0.2   21  789-809   257-277 (310)
164 cd03000 PDI_a_TMX3 PDIa family  24.8      27  0.0007   13.1   0.6   30  141-171     9-38  (104)
165 TIGR02652 TIGR02652 conserved   24.8      33 0.00083   12.6   1.0   18  158-175    11-28  (172)
166 TIGR01011 rpsB_bact ribosomal   24.6      33 0.00084   12.5   1.0   12  537-548   196-207 (227)
167 cd00736 bacteriophage_lambda_l  24.4      36 0.00091   12.3   5.0   60  672-733    61-120 (151)
168 TIGR02196 GlrX_YruB Glutaredox  23.7      19 0.00049   14.2  -0.4   10  155-164     5-14  (79)
169 pfam12621 DUF3779 Phosphate me  23.2      38 0.00096   12.1   1.5   24  151-174    41-64  (95)
170 PRK09628 oorB 2-oxoglutarate-a  23.0      21 0.00053   13.9  -0.3   19  149-167     8-26  (281)
171 smart00836 DALR_1 DALR anticod  22.8      38 0.00098   12.1   6.7   48  700-747    35-82  (122)
172 PRK11867 2-oxoglutarate ferred  22.5      29 0.00074   12.9   0.4   18  151-168    10-27  (280)
173 KOG0614 consensus               22.5      39 0.00099   12.0   2.6   22  248-269   213-234 (732)
174 COG2069 CdhD CO dehydrogenase/  22.5      30 0.00076   12.8   0.4   23  766-788   364-386 (403)
175 KOG2713 consensus               22.2      39   0.001   12.0   5.4   12  627-638   208-219 (347)
176 TIGR02902 spore_lonB ATP-depen  22.1      37 0.00094   12.2   0.8   35  506-544   204-239 (532)
177 TIGR01127 ilvA_1Cterm threonin  21.6      33 0.00085   12.5   0.5   64  257-324    68-132 (381)
178 TIGR02699 archaeo_AfpA archaeo  21.2      41   0.001   11.9   1.7   16  257-272    56-71  (176)
179 pfam05746 DALR_1 DALR anticodo  20.7      42  0.0011   11.8   8.8   48  700-747    31-78  (117)
180 TIGR01393 lepA GTP-binding pro  20.3      43  0.0011   11.7   2.1   57  354-411   118-181 (598)

No 1  
>TIGR00396 leuS_bact leucyl-tRNA synthetase; InterPro: IPR002302   The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases .    Leucyl tRNA synthetase (6.1.1.4 from EC) is an alpha monomer that belongs to class Ia. There are two different families of leucyl-tRNA synthetases. This family includes the eubacterial and mitochondrial synthetases. The crystal structure of leucyl-tRNA synthetase from the hyperthermophile Thermus thermophilus has an overall architecture that is similar to that of isoleucyl-tRNA synthetase, except that the putative editing domain is inserted at a different position in the primary structure. This feature is unique to prokaryote-like leucyl-tRNA synthetases, as is the presence of a novel additional flexibly inserted domain . ; GO: 0000166 nucleotide binding, 0004823 leucine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006429 leucyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=100.00  E-value=0  Score=1752.89  Aligned_cols=851  Identities=44%  Similarity=0.845  Sum_probs=800.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCCCCCC--CCCCCEEEEECCCCCCCC-CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             5689998999999998598036767--888838998077897898-7400477977899999977718985567688140
Q gi|254780802|r    6 YSPQETDSIWQSAWYDSNIFKAENG--KNKKKYFVLEMFPYPSGN-IHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDA   82 (869)
Q Consensus         6 y~~~~iE~kwq~~W~~~~~fe~~~~--~~~~kf~i~~~pPy~nG~-lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~   82 (869)
                      |++.+||+|||++|.++++|+...+  ++++|||++++||||||. |||||.|+|||.||++||+||+|||||||||||.
T Consensus         1 y~~~~IE~KWq~~W~~~~~~~~~~dpi~~~~K~YiL~MFPYPSG~GLH~GHvR~YTItDvl~Ry~r~~GynVLHP~GwDA   80 (916)
T TIGR00396         1 YNHIEIEKKWQQKWAENKTFKTTDDPISNKPKYYILSMFPYPSGAGLHMGHVRNYTITDVLSRYKRMKGYNVLHPMGWDA   80 (916)
T ss_pred             CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             97000115788873237856520055455786466237879560775016514235764999999862883247667574


Q ss_pred             CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCCC
Q ss_conf             20589999998099999999999999999999819176646982147735999999999999988963412213321477
Q gi|254780802|r   83 FGMPAENAAREHNVHPKMWTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPV  162 (869)
Q Consensus        83 ~GlPie~~~~e~~~~~~~~~~~~i~~~k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~pV~wcp~  162 (869)
                      +|||+|++|++++.+|..||++||+.||+||+.||+++||+||..|+||+||+|+||+|.+||++||+|+...+|||||.
T Consensus        81 FGLPAEnaAI~~~~~P~~WT~~NI~~m~~Ql~~LGf~yDw~RE~~T~~P~YYkwtQWiF~~Lf~kGLaY~ke~~VNWCP~  160 (916)
T TIGR00396        81 FGLPAENAAIKRGIHPAKWTYENIANMKKQLQALGFSYDWDREIATCDPEYYKWTQWIFLELFEKGLAYVKEATVNWCPN  160 (916)
T ss_pred             CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEEECCC
T ss_conf             56425899986489870037899999999999845564411053238887433666888999762852763111330677


Q ss_pred             CCCCCCHHHHH---CC--CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             67677898984---38--533456432233475233430344454432100225-5432222210001455767545355
Q gi|254780802|r  163 EQTVLANEQVI---NG--RGWRSDAPVEQRSLPQWFFKISDLSQELLDSIETLS-EWPEKVKIMQKNWIGRSEGMEIRWE  236 (869)
Q Consensus       163 ~~t~la~~Ev~---~g--~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~l~-~~p~~v~~~~~~~i~~~~~~~~~~~  236 (869)
                      ++|+|||.||.   +|  .||||+++||+++++|||+|+|+||++|+.+++.|. +||+.|+.||+||||+|+|+++.|.
T Consensus       161 d~TVLANEqVi~DS~Gna~SwR~~~~Vekk~l~QW~LKIT~YAe~LL~dLe~L~D~WP~~VK~MQrNWIGkS~Gv~~~F~  240 (916)
T TIGR00396       161 DGTVLANEQVIIDSDGNARSWRGGTPVEKKELKQWFLKITAYAEELLNDLEELDDHWPESVKEMQRNWIGKSEGVEITFK  240 (916)
T ss_pred             CCCCCCCHHEEECCCCCCEEECCCCCEEEEECCCCEEHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCEEEEEEEEEE
T ss_conf             78451020301227898532248784466306751011337889854114204678873136404545655520489974


Q ss_pred             CCCC---CCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCHHHHHCCHH--HHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             5677---777751365320013444323200330244320345413145--89998865311112455543025532378
Q gi|254780802|r  237 IVSN---TIDQIEEILVYTTRPETIFGASFIAIAVDHSISEKLSCDNTD--IKEFCDEEKQKGTSLSVLDKTEKKGIYTG  311 (869)
Q Consensus       237 ~~~~---~~~~~~~l~~~TtrPeTl~g~~~i~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  311 (869)
                      +.+.   .-.+.+.|.|+||||+|+||+|+++++|+|+++++.+..+..  +.+|+.+..+........+..++.|.++|
T Consensus       241 i~d~clkacn~~e~i~VFTTRPdT~fGvtYlalA~~HpLv~~~~~~~~~~~v~~fi~~~~~~~~~~~~~~~~~k~Gv~tg  320 (916)
T TIGR00396       241 IADHCLKACNKKEKIAVFTTRPDTIFGVTYLALAPEHPLVEKIAKNNPKEEVAAFIKKIAQKSDLERTKETKEKKGVFTG  320 (916)
T ss_pred             ECCCHHHHCCCCCEEEEEECCCCCEEEEEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCC
T ss_conf             25731210378751699866863010026576615785899997408467899999998730705555664201464668


Q ss_pred             CEECCCCCCCEEEEEEECCCCCCCCCCC--CCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCC
Q ss_conf             6103777774157763112345453332--22111346721101221035443210167765554222112101233445
Q gi|254780802|r  312 IHVKHPLNPNVVIPVYIANFVFMNYGTG--AIFGCPFADQRDMDFAKKYGLPIIPIMKRSINHSQDIEEGKAFSGDGIMI  389 (869)
Q Consensus       312 ~~~~~P~~~~~~ipv~~~~~V~~~~GTG--~V~~~P~h~~~D~~~~~k~glpi~~v~~~~~~~~~~~~~~~~~~~~~~~~  389 (869)
                      .+++||+|++ .|||+.|+||..++|||  +||.||||+++||+++++|+||+.+|+........++....++..+|+.+
T Consensus       321 ~~AihPlT~e-~iPiwvAnYVl~~YGTgPsAVMGVPaHDeRDF~FA~~~~Lpi~~Vi~~~~~~~~~~~~~~A~t~~g~~~  399 (916)
T TIGR00396       321 IYAIHPLTGE-KIPIWVANYVLASYGTGPSAVMGVPAHDERDFEFAQKYKLPIKVVIDPADADGKNLKLEQAYTEDGVLV  399 (916)
T ss_pred             CEEECCCCCC-CCCEEEECEEECCCCCCCHHCCCCCCCCCCHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHCCCEE
T ss_conf             6363476776-445576330011578985020358888741279998578971587527776675115667676465221


Q ss_pred             CC------------HHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEC
Q ss_conf             83------------000135646654888999974046775202221110001112211232222234223334684634
Q gi|254780802|r  390 NS------------SFLDGMTNTEALQAVMSHLEKQNIKNSPIGKRKINFRLRDWCISRQRSWGCPIPVIHCQKCGIVEL  457 (869)
Q Consensus       390 ~~------------~~~~g~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~DW~ISRqr~WG~piPv~~~~~~~~~~~  457 (869)
                      |+            +.++|+...+|++.|+..|++.+.     |+++|+||||||.||||||||+||||.+|++|+.+++
T Consensus       400 ns~tstdGvltkeC~~f~Gl~~~~A~~~I~~~L~~~~~-----gk~~v~YrLRDW~~SRQRYWG~PIPiih~e~g~~~P~  474 (916)
T TIGR00396       400 NSSTSTDGVLTKECGEFNGLNSSEAKEAIIKMLEKEGK-----GKRKVNYRLRDWLFSRQRYWGEPIPIIHCEDGGAVPV  474 (916)
T ss_pred             CCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCC-----CCEEEEEEEECCCEEEECCCCCCCCEEEECCCCCCCC
T ss_conf             68765344101000222377617899999999986388-----5021234653253440002688987788067684244


Q ss_pred             CCCCCCHHHHCCCCCCCCC---CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CC------CCCH
Q ss_conf             7420001110010002245---421002456421101367644356432345666433322335556-54------4101
Q gi|254780802|r  458 PKEDLPVQLPEDLDFTLPG---NPLENHPTWKKIFCVKCGSEALRETDTMDTFVDSSWYYMRYMTPH-AK------DPIN  527 (869)
Q Consensus       458 ~~~~l~v~~~~d~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~r~~dvld~w~dS~~~~~~~~~~~-~~------~~~~  527 (869)
                      +.+||||+||++..+.+.|   +||+..++|.++.|++|+.+++||+||||+|.+|||||+||++|+ +.      .+++
T Consensus       475 ~~~dLPv~LP~~~~~~~~G~~~sPL~~~~~W~~v~~~~~~~~A~RETdTMdtf~~SsWYylRY~~p~~n~~FWPi~~~~d  554 (916)
T TIGR00396       475 PEEDLPVKLPELVNYDGSGTGESPLSRIKEWVNVTCPSCGKPALRETDTMDTFIGSSWYYLRYLDPKNNTNFWPIDQPFD  554 (916)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf             34468710750023578889888043074632414788798754337876305777899986035001766687321302


Q ss_pred             HHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCC-EEECC-C
Q ss_conf             356641143344014555443320234555320134787322----32002222355323224332358700-13062-0
Q gi|254780802|r  528 KELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIGYIEI----DEPFKRLFTQGMVVHETYYQLEGIKK-KYLKP-D  601 (869)
Q Consensus       528 ~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~g~~~~----~~pf~~l~~~G~v~~~~~~~~~~~~~-~~~~p-~  601 (869)
                      +|.+++|+|||+||||++|+||||+|+||||++|.+.|.+..    +|||++|++||||++.++........ .|..| .
T Consensus       555 ~e~~~~wlPVD~YiGG~EHAiLHLLY~RF~hK~L~D~g~v~~PaGi~EPFkKL~~QGMVlg~~f~y~~~~g~~~W~~p~d  634 (916)
T TIGR00396       555 KEKAEYWLPVDLYIGGIEHAILHLLYARFFHKFLYDLGLVSTPAGIKEPFKKLINQGMVLGDAFYYKKPNGKRIWVVPAD  634 (916)
T ss_pred             HHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCEEECCCEEECCCCCCEEEEECCC
T ss_conf             78897558844102626899899888899999997457615877665714554200002116134138997367764575


Q ss_pred             HHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             22102567775441104897064047421000000122221001234633566655301332111113432101145567
Q gi|254780802|r  602 EVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDIIWSNKGVDSTYQFI  681 (869)
Q Consensus       602 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~~~~~~~~~~d~~~s~~~i~~~~rfl  681 (869)
                      .+..++-.+...-+....++..+....+||||||||+|+|.++|++|||||+|||+|++||+..++.|++++|+|++|||
T Consensus       635 ~~~~~d~~~d~~~~~d~~~~~~~~~~~~KMSKSK~N~i~P~e~~~~yGADa~Rlf~mF~~P~~~~L~W~~~g~~G~~RFL  714 (916)
T TIGR00396       635 ELIERDEKGDIKKAKDKSGGELVVVGYEKMSKSKGNGIDPQEIVKKYGADALRLFIMFMGPIAASLEWNESGLEGARRFL  714 (916)
T ss_pred             CEEECCCCCCCCCCEECCCCCEEEEEEEEECCCCCCCCCCHHHHHHCCHHHHHHHHHHCCCHHHCCCCCCCCHHHHHHHH
T ss_conf             16610466786542325888247887776202367988703897404802799999704883141477711101356888


Q ss_pred             HHHHHHHHHHHCCCCC--------------CCCHHHHHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHH
Q ss_conf             7889999976302466--------------7897569999999999999999988168--89999999999999999998
Q gi|254780802|r  682 QQIWRLIYNAKDELQT--------------SSTKKDISLISKSTKFLERIEENYQNLS--FNKAVANIHELVNVISKPLM  745 (869)
Q Consensus       682 ~kl~~l~~~~~~~~~~--------------~~~~~D~~ils~~~~~i~~v~~~~e~~~--f~~ai~~i~~f~n~ls~~y~  745 (869)
                      +|+|+|..........              ..+..++.+.+.+|++|++|+++++.-+  ||+||+++|.|+|.|.+.-.
T Consensus       715 ~RVw~l~~~~~~~~~~~~~avrP~~~~~~~~l~~~~~~~~~~~~~~lk~v~e~~~~~~~~fNT~IS~~M~l~N~L~k~~~  794 (916)
T TIGR00396       715 DRVWNLVKEILGELSGIISAVRPKTELTETALEEAQKELRREVHKFLKKVTEDLEKLELSFNTAISAMMELLNALYKATK  794 (916)
T ss_pred             HHHHHHHHHHCCCHHHEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99999998732660002554246100343112304689999999999888753176201355899999999999873102


Q ss_pred             HHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC-CCCCEEECCCCCCCHHHHHCCC-CEEEEEECCEE--E
Q ss_conf             621100022179999999999999972234389999999828-9983551788665967860377-14989973816--6
Q gi|254780802|r  746 EIAKKKSNADRISTIRYILEKLIIMMSPMIPHLAEECWQLLG-NAGLVAQQKWPKLDPILEVNTD-IILPIQVNGKK--R  821 (869)
Q Consensus       746 ~~~k~~~~~~~~~~l~~vl~~l~~lLaPi~PhiaEEiw~~Lg-~~~~i~~~~WP~~d~~~~~~~~-~~~~iqingk~--r  821 (869)
                             ++....++.+.++.++++|+||+||+|||||+.|| ..+.++.+.||++|+.++..+. ++++||||||.  |
T Consensus       795 -------~ge~~~~~~e~~~~~~~~L~P~aPhlaeELwe~lg~~~~~~~~~~w~~~D~~~l~~d~k~~iv~~~nGK~my~  867 (916)
T TIGR00396       795 -------DGEDRALYLEYLKGLVTVLSPFAPHLAEELWEKLGSEPSIIKQAKWPKVDETALVEDKKVEIVVQVNGKVMYR  867 (916)
T ss_pred             -------CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHCCHHHCHHHHHCCCEEEEEEEEEEEEEEE
T ss_conf             -------3411588999999899885152016899999985777001544112021246541252058999974268986


Q ss_pred             EEEECCCCCCHHHHHHHHHCCHHHHHHHCCCCCEEEEECCCCEEEEEC
Q ss_conf             799808888999999999747888998469982599981890575779
Q gi|254780802|r  822 ACITVSMNTDDDFIKKTVLELNVIKNILQGKSPKKIIIISKRIVNIVV  869 (869)
Q Consensus       822 ~~i~v~~~~~~~~i~~~~~~~~~i~~~l~~k~~~k~I~v~~klin~vi  869 (869)
                      +++++++++++++|+.++.+++.+++.|.+++|+||||||+|||||||
T Consensus       868 a~~~v~~~a~e~~~~~~a~~d~~~~~~L~n~~i~Kvi~V~~klvN~v~  915 (916)
T TIGR00396       868 AKITVPKDADEEQVEELAKADEEVKKYLENKTIKKVIYVPGKLVNFVI  915 (916)
T ss_pred             EEEEECCCCCHHHHHHHHHCCHHHHHHHCCCCEEEEEEECCCEEEEEE
T ss_conf             767750678889999997129688985358961799997483898874


No 2  
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=100.00  E-value=0  Score=1734.22  Aligned_cols=817  Identities=49%  Similarity=0.934  Sum_probs=758.8

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             76568999899999999859803676788883899807789789874004779778999999777189855676881402
Q gi|254780802|r    4 RSYSPQETDSIWQSAWYDSNIFKAENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAF   83 (869)
Q Consensus         4 ~~y~~~~iE~kwq~~W~~~~~fe~~~~~~~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~   83 (869)
                      ++|||++||+|||++|+++++|++.. .+++|||+++|||||||.|||||++|||++|+++|||||+|||||||||||||
T Consensus         3 ~~Y~~~~iE~kw~~~W~~~~~f~~~~-~~~~k~yvld~~PYpsG~lH~GH~~~~ti~Dii~Rykrm~G~~Vl~p~GwD~~   81 (822)
T PRK00390          3 MRYNPKEIEKKWQKYWEENKTFKVTE-DSKPKYYVLDMFPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAF   81 (822)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCCCCC-CCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf             87886999999999998569824897-78998079377999898611325564789999999987189963898973668


Q ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCC
Q ss_conf             05899999980999999999999999999998191766469821477359999999999999889634122133214776
Q gi|254780802|r   84 GMPAENAAREHNVHPKMWTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVE  163 (869)
Q Consensus        84 GlPie~~~~e~~~~~~~~~~~~i~~~k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~pV~wcp~~  163 (869)
                      |||+|++|++++++|++|++++|+.|++||+|||+|+||+|+|.|+||+|++++||+|.+|+++||||||.+||+|||.|
T Consensus        82 GLPaE~~aik~~~~p~~~t~~nI~~~k~q~k~lG~~~DW~r~~~T~dp~y~~~~qw~F~~l~ekGliyr~~~~V~Wcp~~  161 (822)
T PRK00390         82 GLPAENAAIKTGTHPAEWTYENIANMKKQLKSLGFSYDWSREIATCDPEYYKWTQWLFLKLYEKGLAYRKESPVNWCPVD  161 (822)
T ss_pred             CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCC
T ss_conf             86898999994998899999999999999998395430689877578779999999999999889979523242007976


Q ss_pred             CCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             76778989843853345643223347523343034445443210022554322222100014557675453555677777
Q gi|254780802|r  164 QTVLANEQVINGRGWRSDAPVEQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIRWEIVSNTID  243 (869)
Q Consensus       164 ~t~la~~Ev~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~i~~~~~~~~~~~~~~~~~~  243 (869)
                      +|+|||+||++|.||||+++|++++++|||||+|+|+++|+++++.|..||+.|+.||+||||+|.|+.++|++.+.   
T Consensus       162 ~T~LAn~eV~~G~~~r~~~~V~~k~~~qw~~kit~Ya~~Ll~~l~~l~~wP~~vk~mQ~nWIG~s~g~~v~F~~~~~---  238 (822)
T PRK00390        162 QTVLANEQVIDGRSWRSGAPVEKKELPQWFLKITDYADELLDDLDELDGWPEKVKTMQRNWIGRSEGAEVTFKVKGS---  238 (822)
T ss_pred             CCCCCHHHHCCCCCCCCCCEEEEEECCEEEEEHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCEEEEEEEEECCCC---
T ss_conf             87765044414764346870466304403552007588875021002466077766530433420007986331699---


Q ss_pred             CCCEEEEEEECCCCCCCCCEEEEECCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEE
Q ss_conf             75136532001344432320033024432034541314589998865311112455543025532378610377777415
Q gi|254780802|r  244 QIEEILVYTTRPETIFGASFIAIAVDHSISEKLSCDNTDIKEFCDEEKQKGTSLSVLDKTEKKGIYTGIHVKHPLNPNVV  323 (869)
Q Consensus       244 ~~~~l~~~TtrPeTl~g~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~P~~~~~~  323 (869)
                       ...+.|||||||||||+|+++++|+|+++..+...+..+..++.+.+............++.|.++|.+++||++++ .
T Consensus       239 -~~~l~v~TTrP~Tl~G~t~~~v~p~h~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ek~G~~~G~~~~~P~~~~-~  316 (822)
T PRK00390        239 -DEKLEVFTTRPDTLFGATYLVLAPEHPLAEKLAEQNPAVAAFIEECKNKSDLERTLATKEKTGVFTGLYAIHPLTGE-K  316 (822)
T ss_pred             -CCEEEEEECCHHHHCCCCEEEEECCCHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHCEEECEECCCEEECCCCCC-E
T ss_conf             -85599996883352286279993797899999844899999999987124366655315010100585897778896-5


Q ss_pred             EEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCHHHHH
Q ss_conf             77631123454533322211134672110122103544321016776555422211210123344583000135646654
Q gi|254780802|r  324 IPVYIANFVFMNYGTGAIFGCPFADQRDMDFAKKYGLPIIPIMKRSINHSQDIEEGKAFSGDGIMINSSFLDGMTNTEAL  403 (869)
Q Consensus       324 ipv~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~k~glpi~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  403 (869)
                      +||++++||++++|||+||+|||||++||+++++||||+++|++....       ..++.++|.++|+++++|+.+.+|+
T Consensus       317 iPI~~ad~V~~~~GTG~V~~~PaHd~~D~~~a~k~~Lpi~~Vi~~~~~-------~~~~~~~G~lins~~~~Gl~~~eA~  389 (822)
T PRK00390        317 IPVWIANYVLMDYGTGAVMAVPAHDQRDFEFAKKYGLPIKQVIGGDVS-------EEAYTEDGVLINSGELDGLDSEEAK  389 (822)
T ss_pred             EEEEEECCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCEEEECCCCC-------CCCCCCCEEEECCHHCCCCCHHHHH
T ss_conf             569962525245787726756878878999999829982476378876-------6545577148763421786468899


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCC-CCCCHH
Q ss_conf             8889999740467752022211100011122112322222342233346846347420001110010002245-421002
Q gi|254780802|r  404 QAVMSHLEKQNIKNSPIGKRKINFRLRDWCISRQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPG-NPLENH  482 (869)
Q Consensus       404 ~~i~~~l~~~~~~~~~~~~~~~~~~l~DW~ISRqr~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~-~~l~~~  482 (869)
                      ++++++|++.+.     |++.++|+|||||||||||||+|||||||++|+.+.+++++|++++|++..+...| +||..+
T Consensus       390 ~~ii~~L~~~g~-----g~~~i~yrLRDW~iSRQRyWG~PIPi~~c~~~~~v~v~e~~Lpv~LPe~~~~~~~g~~PL~~~  464 (822)
T PRK00390        390 EAIIAWLEEKGL-----GKRKVNYRLRDWGISRQRYWGEPIPIIHCEDCGVVPVPEDDLPVVLPEDVVPDGTGESPLAKH  464 (822)
T ss_pred             HHHHHHHHHCCC-----CCCCCCEECCCCEEECCCCCCCCEEEEEECCCCEEEEEHHHCCCCCHHHEECCCCCCCHHHHC
T ss_conf             999999997799-----866341012663221120257840389957897787107875534600130068899946847


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHC
Q ss_conf             45642110136764435643234566643332233555654-41013566411433440145554433202345553201
Q gi|254780802|r  483 PTWKKIFCVKCGSEALRETDTMDTFVDSSWYYMRYMTPHAK-DPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHIL  561 (869)
Q Consensus       483 ~~~~~~~~~~~~~~~~r~~dvld~w~dS~~~~~~~~~~~~~-~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l  561 (869)
                      ++|.+..|++||+.+.||+||||+||||||||++|+.|++. .+++++.+++|+|+|+|++|.+|+|+|++|+|||+++|
T Consensus       465 ~~w~~~~c~~~g~~~~RetDt~DtW~dSsWY~~ry~~p~~~~~~~d~~~~~yw~PvD~YigG~EHailHLlYsRF~~~~l  544 (822)
T PRK00390        465 PEWVNVTCPKCGKPARRETDTMDTFVGSSWYYLRYTDPHNDEAMFDKEAANYWLPVDQYIGGIEHAVLHLLYARFFHKVL  544 (822)
T ss_pred             CCCEEEECCCCCCCCEECCCCCCEEECCCCEEEECCCCCCCCCCCCHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHH
T ss_conf             00175214777872145353102011354400001577644466797788602896140164456677888888999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCC
Q ss_conf             34787322320022223553232243323587001306202210256777544110489706404742100000012222
Q gi|254780802|r  562 KKIGYIEIDEPFKRLFTQGMVVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDP  641 (869)
Q Consensus       562 ~~~g~~~~~~pf~~l~~~G~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p  641 (869)
                      .++|++..++||++|++||||+++.+...   .+++..|.++..              ++.....+|+||||||||||+|
T Consensus       545 ~dlg~~~~~ePF~~l~~qGmVl~~~~~~~---~~~~~~~~~v~~--------------~~~~~~~~g~KMSKSkGNvv~P  607 (822)
T PRK00390        545 RDLGLVSSDEPFKKLLTQGMVLGETYYDE---RGNWVSPADVEV--------------ERDEKRIGGIKMSKSKGNVVDP  607 (822)
T ss_pred             HHCCCCCCCCCHHHHEECCEEECCCCCCC---CCCCCCHHHEEE--------------ECCCCCCCCCCCCCCCCCCCCH
T ss_conf             87167556777577504456842544445---677666011242--------------0455676776167657896898


Q ss_pred             CCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             10012346335666553013321111134321011455677889999976302466789756999999999999999998
Q gi|254780802|r  642 MKVIKSYGADTARLFVLSDSPPDRDIIWSNKGVDSTYQFIQQIWRLIYNAKDELQTSSTKKDISLISKSTKFLERIEENY  721 (869)
Q Consensus       642 ~~~i~~yGaD~lRl~~~~~~~~~~d~~~s~~~i~~~~rfl~kl~~l~~~~~~~~~~~~~~~D~~ils~~~~~i~~v~~~~  721 (869)
                      .++|++||||++|||+++++|+++|++||++++++++|||+|+||++....   .......|+|+++++|+++++|+++|
T Consensus       608 ~~ii~~yGADalRl~~l~~ap~~~d~~ws~~~i~g~~rfl~rlw~~~~~~~---~~~~~~~d~~l~~~l~~~I~~vt~~~  684 (822)
T PRK00390        608 DDIIDKYGADTARLFEMFAGPPEKDLEWSDSGVEGAYRFLQRVWRLVYDEG---AVAALEADKELRRALHKTIKKVTEDI  684 (822)
T ss_pred             HHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC---CCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             999875480799999996088566612048789999999999999730444---55687231999999999999999999


Q ss_pred             HHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEECCCCCCC
Q ss_conf             81688999999999999999999862110002217999999999999997223438999999982899835517886659
Q gi|254780802|r  722 QNLSFNKAVANIHELVNVISKPLMEIAKKKSNADRISTIRYILEKLIIMMSPMIPHLAEECWQLLGNAGLVAQQKWPKLD  801 (869)
Q Consensus       722 e~~~f~~ai~~i~~f~n~ls~~y~~~~k~~~~~~~~~~l~~vl~~l~~lLaPi~PhiaEEiw~~Lg~~~~i~~~~WP~~d  801 (869)
                      |+|+||+|++.+|+|+|.+++..           ...+++++++.+++|||||+||+|||||+.||+++|||+++||++|
T Consensus       685 e~~~fn~ai~~l~~f~N~l~k~~-----------~~~~l~~~l~~l~rlLaPf~PhiaEElW~~Lg~~~sV~~~~WP~~d  753 (822)
T PRK00390        685 ERLRFNTAIAALMELVNALSKAP-----------DRAVLREALEILVRLLAPFAPHIAEELWQELGHEGSIANAPWPEVD  753 (822)
T ss_pred             HCCCHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCC
T ss_conf             76677699999999999998725-----------1899999999999999878899999999977999856458999678


Q ss_pred             HHHHHCCCCEEEEEECCEEEEEEECCCCCCHHHHHHHHHCCHHHHHHHCCCCCEEEEECCCCEEEEEC
Q ss_conf             67860377149899738166799808888999999999747888998469982599981890575779
Q gi|254780802|r  802 PILEVNTDIILPIQVNGKKRACITVSMNTDDDFIKKTVLELNVIKNILQGKSPKKIIIISKRIVNIVV  869 (869)
Q Consensus       802 ~~~~~~~~~~~~iqingk~r~~i~v~~~~~~~~i~~~~~~~~~i~~~l~~k~~~k~I~v~~klin~vi  869 (869)
                      ++++.+++++++||||||+|++++++.+++++++++++++.+++++.++||+++|+||||+|||||||
T Consensus       754 e~~l~~~~~~~~vqiNGK~r~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~k~i~k~I~vp~kiiN~Vv  821 (822)
T PRK00390        754 EAALVEDEVTIVVQVNGKVRGKIEVAADASKEEVEALALADEKVQKFLEGKTIKKVIVVPGKLVNIVV  821 (822)
T ss_pred             HHHHHHCCCEEEEEECCEEEEEEEECCCCCHHHHHHHHHCCHHHHHHHCCCCCEEEEEECCCEEEEEE
T ss_conf             78882167789999748087799808999999999998649779998589983399998997589996


No 3  
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00  E-value=0  Score=1509.76  Aligned_cols=801  Identities=46%  Similarity=0.838  Sum_probs=742.8

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCCCCCCCCC-CCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             765689998999999998598036767888-8389980778978987400477977899999977718985567688140
Q gi|254780802|r    4 RSYSPQETDSIWQSAWYDSNIFKAENGKNK-KKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDA   82 (869)
Q Consensus         4 ~~y~~~~iE~kwq~~W~~~~~fe~~~~~~~-~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~   82 (869)
                      ..|++.+||+|||++|+++++|+++.++++ +|||+++|||||||.|||||+||||+.||+|||+||+||||||||||||
T Consensus         3 ~~y~~~~IE~KWQ~~W~e~~~Fe~~~d~~~~~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGwda   82 (814)
T COG0495           3 SRYNPREIEEKWQKRWEEAKVFEADEDSDKPEKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWDA   82 (814)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCCC
T ss_conf             65235789999999998659710689888777559986787888873468541210899999999856972145675566


Q ss_pred             CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCCC
Q ss_conf             20589999998099999999999999999999819176646982147735999999999999988963412213321477
Q gi|254780802|r   83 FGMPAENAAREHNVHPKMWTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPV  162 (869)
Q Consensus        83 ~GlPie~~~~e~~~~~~~~~~~~i~~~k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~pV~wcp~  162 (869)
                      +|||||++|++.+.+|+.|+++|++.||+||++||+|+||+|+|.|+||+|++|+||||.+|+++||+|++.++|+|||.
T Consensus        83 fGlPae~~A~~~~~~P~~wt~~ni~~~k~qlk~lG~siDW~Ref~T~Dp~Yyk~~QW~F~kL~ekGL~y~~~~~VnwcP~  162 (814)
T COG0495          83 FGLPAENAAIKIGTDPAKWTYYNIAYMKKQLKSLGFSIDWRREFATCDPEYYKWIQWQFLKLYEKGLAYRKEAPVNWCPV  162 (814)
T ss_pred             CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCEEECCCCCEECCC
T ss_conf             68639999998578969999999999999999808761235545647964779999999999977988852554310777


Q ss_pred             CCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             6767789898438533456432233475233430344454432100225-543222221000145576754535556777
Q gi|254780802|r  163 EQTVLANEQVINGRGWRSDAPVEQRSLPQWFFKISDLSQELLDSIETLS-EWPEKVKIMQKNWIGRSEGMEIRWEIVSNT  241 (869)
Q Consensus       163 ~~t~la~~Ev~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~l~-~~p~~v~~~~~~~i~~~~~~~~~~~~~~~~  241 (869)
                      |+||||||||.+|.||||+.+|++++++|||||+++|+++|++++..+. .|||+|++||+||||++.|+.+.|.+.+..
T Consensus       163 d~tvlaneqv~~g~~~r~~~~V~~kel~qw~~kit~yae~ll~~l~~l~~~wPE~Vk~mq~nWIg~s~g~~v~f~~~~~~  242 (814)
T COG0495         163 DGTVLANEQVIDGGCWRCGEPVEIKELTQWFFKITDYADELLDDLDKLATLWPETVKGMQRNWIGPSEGYEVAFVVDGEE  242 (814)
T ss_pred             CCCCCCCCEEECCCCCCCCCCEEEEEEEEEEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCEEEEEECCCCC
T ss_conf             69761541241587655788526866689999913429999866665424795669989872707888758998517764


Q ss_pred             CCCCCEEEEEEECCCCCCCCCEEEEECCCCCCHHHHHCC--HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCC
Q ss_conf             777513653200134443232003302443203454131--458999886531111245554302553237861037777
Q gi|254780802|r  242 IDQIEEILVYTTRPETIFGASFIAIAVDHSISEKLSCDN--TDIKEFCDEEKQKGTSLSVLDKTEKKGIYTGIHVKHPLN  319 (869)
Q Consensus       242 ~~~~~~l~~~TtrPeTl~g~~~i~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~P~~  319 (869)
                      .  ...+.++||||+|++|++.++++|+|+++..++..+  ..+.+|++++...+...++....++.+.++|.+++||++
T Consensus       243 ~--~~~~~vfttr~dt~~gvt~~~~a~~h~lv~~~~~~~~~~~~a~fv~~~~~~~~~~~~~~~~~k~gv~~g~~a~~p~~  320 (814)
T COG0495         243 E--IVSIEVFTTRPDTLFGVTYVVLAPEHPLVGKLVTNPQTPLVAEFVDECKGTGVVESVPAHAEKDGVFLGGYAINPVN  320 (814)
T ss_pred             C--CCCEEEEECCCCCCCCEEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCEECCCCCCCCCC
T ss_conf             4--10024466357311674899970786678987418651669999988617871563045687763113650247777


Q ss_pred             CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCH
Q ss_conf             74157763112345453332221113467211012210354432101677655542221121012334458300013564
Q gi|254780802|r  320 PNVVIPVYIANFVFMNYGTGAIFGCPFADQRDMDFAKKYGLPIIPIMKRSINHSQDIEEGKAFSGDGIMINSSFLDGMTN  399 (869)
Q Consensus       320 ~~~~ipv~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~k~glpi~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  399 (869)
                      + ..+||+.++||.+..|||.||.+|+|+++|++++++|+||+.+++...+.     .+..++.++++++||+.++|+..
T Consensus       321 ~-e~iPi~~a~~vl~~ygtgavm~vpahd~rd~efA~~y~l~i~~vi~~~~~-----~~~~~~~~~g~linS~~~~gl~~  394 (814)
T COG0495         321 G-EKIPVWIANYVLMEYGTGAVMGVPAHDERDLEFATKYKLPIKKVIMPEGT-----VGKKVYEGEGVLINSGGLDGLDY  394 (814)
T ss_pred             C-CCCCEEEECCCCCCCCCCCEECCCCCCCHHHHHHHHCCCCEEEEEECCCC-----CCCEEECCCCEEECCCCCCCCCC
T ss_conf             8-86778996743145556635458888702068998528861799824887-----66400114745762543367640


Q ss_pred             HHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCC
Q ss_conf             66548889999740467752022211100011122112322222342233346846347420001110010002245421
Q gi|254780802|r  400 TEALQAVMSHLEKQNIKNSPIGKRKINFRLRDWCISRQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPL  479 (869)
Q Consensus       400 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~DW~ISRqr~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l  479 (869)
                      +++...+...+++.+     .+++.++|++|||++|||||||+|||+.+|+.|+.++++.++|++.+|++..+...|+||
T Consensus       395 e~a~~~~~~~l~~~~-----~~q~~v~Y~lrdW~~srqRywg~pipii~~e~~~~~~~~~d~Lpv~lp~~~~~~gt~~pL  469 (814)
T COG0495         395 EEAKVKIRCGLVKRG-----LGQWFVNYRLRDWLKSRQRYWGEPIPIIHCEDCGVVPVPEDWLPVKLPERVRGLGTGSPL  469 (814)
T ss_pred             HHHHHHHHHHHHHHC-----CCCEEEECCCCHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHCCCCCCCCCCCCCCCCCC
T ss_conf             567999998688723-----782588514515778999970899645474237855473676674366411467988999


Q ss_pred             CHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHH
Q ss_conf             00245642110136764435643234566643332233555654--4101356641143344014555443320234555
Q gi|254780802|r  480 ENHPTWKKIFCVKCGSEALRETDTMDTFVDSSWYYMRYMTPHAK--DPINKELVRQWFPVDQYIGGIEHAVLHLLYARFF  557 (869)
Q Consensus       480 ~~~~~~~~~~~~~~~~~~~r~~dvld~w~dS~~~~~~~~~~~~~--~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~  557 (869)
                      ..++.|....|+.  ++.+|++|+||+|++|+||+++|.++...  .+.+++.+++|+|+|+|++|.||+++|++|+|||
T Consensus       470 ~~~~~W~~~s~~~--s~~~ret~Tm~~~~~sswy~~r~~d~~~~~~~~~~~e~~~yW~PVD~yigG~ehavlHLly~rF~  547 (814)
T COG0495         470 PWDEEWVIESLPD--STAYRETDTMDTFIDSSWYYLRFFDPIFLGELPFDREEFNYWYPVDLYIGGIEHAVLHLLYFRFF  547 (814)
T ss_pred             CCCCCEEEEECCC--CCEEEEHHHHHHHCCCCCCCHHHCCHHCCCCCHHCHHHHHCCCCHHEEECCHHHHHHHHHHHHHH
T ss_conf             8883617996699--85353232465760432101866581007543225788742067201226366777889999999


Q ss_pred             HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCC
Q ss_conf             32013478732232002222355323224332358700130620221025677754411048970640474210000001
Q gi|254780802|r  558 AHILKKIGYIEIDEPFKRLFTQGMVVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKN  637 (869)
Q Consensus       558 ~~~l~~~g~~~~~~pf~~l~~~G~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGN  637 (869)
                      |.+|.+.|.++.+|||+++++||||+.+                                         +|+||||||||
T Consensus       548 hkal~d~g~~p~~epf~~L~~qGmVl~~-----------------------------------------~g~KMSKSKgN  586 (814)
T COG0495         548 HKALFDEGLVPKDEPFKKLITQGMVLGE-----------------------------------------EGEKMSKSKGN  586 (814)
T ss_pred             HHHHCCCCCCCCCCHHHHHHCCCEEEEC-----------------------------------------CCCCCCCCCCC
T ss_conf             9883475778776504444114268742-----------------------------------------77704544578


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC----HHHHHHHHHHHHH
Q ss_conf             222210012346335666553013321111134321011455677889999976302466789----7569999999999
Q gi|254780802|r  638 VIDPMKVIKSYGADTARLFVLSDSPPDRDIIWSNKGVDSTYQFIQQIWRLIYNAKDELQTSST----KKDISLISKSTKF  713 (869)
Q Consensus       638 vi~p~~~i~~yGaD~lRl~~~~~~~~~~d~~~s~~~i~~~~rfl~kl~~l~~~~~~~~~~~~~----~~D~~ils~~~~~  713 (869)
                      +|+|+++|++||||++|+|+|++||+++|++|+++++++++|||+|+|+++....+......+    ..|+|+   +|++
T Consensus       587 ~v~p~~~i~~yGADt~Rl~~m~~ap~~~d~~W~e~gv~g~~rfL~r~~~l~~~~~~~~~~~~~~~~~~~~~~~---~h~~  663 (814)
T COG0495         587 VVDPEEAVEKYGADTVRLYIMFAAPPEQDLEWSESGVEGARRFLQRVWNLVKEHLEKLVEELTKEQGKEDRWL---LHRT  663 (814)
T ss_pred             CCCHHHHHHHHCCHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH---HHHH
T ss_conf             8898999999584098999986087753788774564899999999999999864023333553056889999---9999


Q ss_pred             HHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCE
Q ss_conf             9999999881-688999999999999999999862110002217999999999999997223438999999982899835
Q gi|254780802|r  714 LERIEENYQN-LSFNKAVANIHELVNVISKPLMEIAKKKSNADRISTIRYILEKLIIMMSPMIPHLAEECWQLLGNAGLV  792 (869)
Q Consensus       714 i~~v~~~~e~-~~f~~ai~~i~~f~n~ls~~y~~~~k~~~~~~~~~~l~~vl~~l~~lLaPi~PhiaEEiw~~Lg~~~~i  792 (869)
                      ++.|++++++ +.||+|++.+|+|+|.|.++......      ...+|+++++.+++||+||+||+|||||+.||+.++|
T Consensus       664 ~~~v~~~~e~~~~~nt~i~~~m~l~N~l~~~~~~~~~------~~~~l~~~l~~~v~lLaP~aPH~aEElW~~lg~~~~v  737 (814)
T COG0495         664 IKKVTEDFEARQTFNTAIAALMELLNALRKYLRRTEG------DRKVLREALETWVRLLAPFAPHIAEELWEELGNEGFV  737 (814)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCE
T ss_conf             9999999999988999999999999999998750232------0789999999999996666647799999996699816


Q ss_pred             EECCCCCCCHHHHHCCCCEEEEEECCEEEEEEECCCCCCHHHHHHHHHCCHHHHHHHCCCCCEEEEECCCCEEEEEC
Q ss_conf             51788665967860377149899738166799808888999999999747888998469982599981890575779
Q gi|254780802|r  793 AQQKWPKLDPILEVNTDIILPIQVNGKKRACITVSMNTDDDFIKKTVLELNVIKNILQGKSPKKIIIISKRIVNIVV  869 (869)
Q Consensus       793 ~~~~WP~~d~~~~~~~~~~~~iqingk~r~~i~v~~~~~~~~i~~~~~~~~~i~~~l~~k~~~k~I~v~~klin~vi  869 (869)
                      +.++||++|++.+..+++++++|+|||+|.++.++.++++++++.++++.+.+++++++++++|+|+||+|++|+|+
T Consensus       738 ~~~~wP~~de~~l~~~~~~~~vqvngk~r~~~~~~~~a~~~~~~~~~~~~~~v~~~l~~~~~~k~i~VP~k~vn~v~  814 (814)
T COG0495         738 SNAPWPEPDEEALVEDEVEIVVQVNGKVRAREVVAADADEEKVKEIALADEEVQKFLQGKTIKKVIAVPGKPVNIVE  814 (814)
T ss_pred             EECCCCCCCHHHCCCCEEEEEEEECCEEEEEEEECCCCCHHHHHHHHHCCHHHHHHHCCCCCCEEEECCCCCEEEEC
T ss_conf             41789987734416550599999802897899974779878999998623889998767885148964996148869


No 4  
>TIGR00422 valS valyl-tRNA synthetase; InterPro: IPR002303   The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases .   Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=100.00  E-value=0  Score=1330.43  Aligned_cols=658  Identities=28%  Similarity=0.474  Sum_probs=558.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC--CC--EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             8765689998999999998598036767888--83--8998077897898740047797789999997771898556768
Q gi|254780802|r    3 TRSYSPQETDSIWQSAWYDSNIFKAENGKNK--KK--YFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPM   78 (869)
Q Consensus         3 ~~~y~~~~iE~kwq~~W~~~~~fe~~~~~~~--~k--f~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~   78 (869)
                      .+.|||+++|.+||+.|+++++|+++.++++  ++  |.|..||||+||.|||||||+.||.|+++|||||+||+|||+|
T Consensus         2 ~~~Y~P~~vE~~~Y~~W~~~~~F~~~~~~~~~~~~~~f~i~~PPPNvTG~LH~GHAl~~~l~D~l~RykRM~G~~vLw~~   81 (970)
T TIGR00422         2 PKDYDPKEVEKKLYDKWEKSGFFKPDGNSNKKVEPKRFCIVIPPPNVTGSLHIGHALNWSLQDILARYKRMKGYNVLWLP   81 (970)
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             88887767779999998727850226864465377751571782585555116689999999999985421787125788


Q ss_pred             CCCCCCHHHHHHHHH----H---CC------------CHHHHHHHHHHHHHHHHHHCCCEEECCCCEECCCHHHHHHHHH
Q ss_conf             814020589999998----0---99------------9999999999999999998191766469821477359999999
Q gi|254780802|r   79 GWDAFGMPAENAARE----H---NV------------HPKMWTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQL  139 (869)
Q Consensus        79 G~d~~GlPie~~~~e----~---~~------------~~~~~~~~~i~~~k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w  139 (869)
                      ||||||+|+|.++|+    +   |.            .|.+|++++++.|++|++|||+|+||+|+++||||+|++.|+-
T Consensus        82 G~DHAGIATQ~~vE~~~~~~~ikgK~k~D~gRe~F~~~~~ewk~e~~~~I~~Q~~rLG~S~DWsrE~FTmd~~l~~~V~~  161 (970)
T TIGR00422        82 GTDHAGIATQVKVEKKLKAEEIKGKTKHDLGREEFVEKIWEWKEESGGTIKNQIKRLGVSLDWSRERFTMDEGLSKAVKE  161 (970)
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHHHHHHHH
T ss_conf             86657632468999998762257887787886899999999998877999999998088502350045448888889999


Q ss_pred             HHHHHHHCCCEEECCEEEECCCCCCCCCCHHHH---HCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             999999889634122133214776767789898---43853345643223347523343034445443210022554322
Q gi|254780802|r  140 LFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQV---INGRGWRSDAPVEQRSLPQWFFKISDLSQELLDSIETLSEWPEK  216 (869)
Q Consensus       140 ~f~~L~~kGliyrg~~pV~wcp~~~t~la~~Ev---~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~l~~~p~~  216 (869)
                      .|.+||++||||||.|+|||||+|+|||||.||   ++.+.         .+...||                       
T Consensus       162 ~Fv~LY~~GLIYRg~~lVNWdpk~~TAiSd~EVenkeyker---------~~~~L~y-----------------------  209 (970)
T TIGR00422       162 AFVRLYEKGLIYRGEYLVNWDPKLNTAISDIEVENKEYKER---------VKGKLYY-----------------------  209 (970)
T ss_pred             HHHHHHHCCCEEECCCCEEEECCCCCHHHHHHHHCCCCCCC---------CCCCCCE-----------------------
T ss_conf             99988554861543611372054463102333321113122---------2665451-----------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCEEEEEEECCCCCCCCCEEEEECCCCCC-HHHHHCCHHHHHHHHHHHHH
Q ss_conf             222100014557675453555677--777751365320013444323200330244320-34541314589998865311
Q gi|254780802|r  217 VKIMQKNWIGRSEGMEIRWEIVSN--TIDQIEEILVYTTRPETIFGASFIAIAVDHSIS-EKLSCDNTDIKEFCDEEKQK  293 (869)
Q Consensus       217 v~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~l~~~TtrPeTl~g~~~i~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~  293 (869)
                                      ++|++.++  ++++..+|+|||||||||||+|+|+|||+.+.+ ..+                 
T Consensus       210 ----------------~~Ypla~~~~~~~Gkd~l~vATTRPETm~gDtAvaVhP~DeRYYk~L-----------------  256 (970)
T TIGR00422       210 ----------------IRYPLANGSKTADGKDYLVVATTRPETMFGDTAVAVHPEDERYYKHL-----------------  256 (970)
T ss_pred             ----------------EEEEECCCCCCCCCCCEEEEEECCCHHHHHCEEEEECCCCCHHHHHH-----------------
T ss_conf             ----------------56543488754235520799726722564282887678970457855-----------------


Q ss_pred             HHHHHHHHHHCCCCCCCCCEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCC-CCCCCCCCCCCC
Q ss_conf             1124555430255323786103777774157763112345453332221113467211012210354-432101677655
Q gi|254780802|r  294 GTSLSVLDKTEKKGIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIFGCPFADQRDMDFAKKYGL-PIIPIMKRSINH  372 (869)
Q Consensus       294 ~~~~~~~~~~~~~~~~~G~~~~~P~~~~~~ipv~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~k~gl-pi~~v~~~~~~~  372 (869)
                                      +|+.+.+||+ ++.|||+.+++||+++|||||+++||||++||+++++|+| |++.+++..|..
T Consensus       257 ----------------~GK~v~~PL~-~r~ipiiaDe~VD~EFGTG~VKvTPAHD~ND~~~g~RH~LLe~i~~l~~dG~L  319 (970)
T TIGR00422       257 ----------------IGKKVILPLT-GRKIPIIADEYVDMEFGTGAVKVTPAHDFNDYEVGKRHNLLEFINILDEDGLL  319 (970)
T ss_pred             ----------------CCCEEEECCC-CCEEEEECCCCCCCCCCCCEEEEECCCCCCCHHHCCEECCCCHHHHCCCCCCC
T ss_conf             ----------------4988972456-76843761775462417512776087497760013412114143331799750


Q ss_pred             CCCCC---CHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHCCC-----------CCCHHHH---------------
Q ss_conf             54222---112101233445830001356466548889999740467-----------7520222---------------
Q gi|254780802|r  373 SQDIE---EGKAFSGDGIMINSSFLDGMTNTEALQAVMSHLEKQNIK-----------NSPIGKR---------------  423 (869)
Q Consensus       373 ~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~l~~~~~~-----------~~~~~~~---------------  423 (869)
                      ++...   -|.. .+.  - -++.|.||.+.+||++|+++|++.+..           .+.+++.               
T Consensus       320 ne~a~~~~tG~~-~~Y--~-iP~~y~GL~~~eAR~kiv~~L~~~glL~k~~p~~~~VG~c~Rsg~vvEP~ls~QWFV~~~  395 (970)
T TIGR00422       320 NENAEVIDTGKE-DVY--A-IPGEYQGLERFEARKKIVEDLKEEGLLVKIEPHTHNVGHCERSGTVVEPLLSKQWFVKVE  395 (970)
T ss_pred             CCEECEEECCCC-CCC--C-CCHHCCCCCHHHHHHHHHHHHHHCCCCCCCCEECCCCCEECCCCCEEECCCCCCCEECHH
T ss_conf             110011007772-331--0-652205888899999999999866880011100034562147893430426998621717


Q ss_pred             -----------H---HH------------H--HCC-CCCCCCCCCCCCCCCCCC--------CCCCCCEECCCCCCCHHH
Q ss_conf             -----------1---11------------0--001-112211232222234223--------334684634742000111
Q gi|254780802|r  424 -----------K---IN------------F--RLR-DWCISRQRSWGCPIPVIH--------CQKCGIVELPKEDLPVQL  466 (869)
Q Consensus       424 -----------~---~~------------~--~l~-DW~ISRqr~WG~piPv~~--------~~~~~~~~~~~~~l~v~~  466 (869)
                                 +   +.            |  .|+ ||||||||+|||||||||        |..||.+.|..++.....
T Consensus       396 ~La~~a~~~~~~~g~~~fvP~~~~~~y~~W~~~~~WDWCISRQL~WGH~IPvWY~~~E~~~~~~~~G~~~V~~~~~~~~~  475 (970)
T TIGR00422       396 KLADKALEAAEEDGEIKFVPKRFEKRYLNWLRNIRWDWCISRQLIWGHRIPVWYVEIEGEEDHKETGEVYVAKEEALPDS  475 (970)
T ss_pred             HHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCEEEEECCCCCCCCCCCEEEECCCCCCCCC
T ss_conf             77899999985458833602167889999996388881330102026457667751357776764114774787764101


Q ss_pred             HCCCCCCCCCCCCCHHHHHHHHHHCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCHHHHHHHCCCHHHHCCC
Q ss_conf             001000224542100245642110136764--4356432345666433322335556-5441013566411433440145
Q gi|254780802|r  467 PEDLDFTLPGNPLENHPTWKKIFCVKCGSE--ALRETDTMDTFVDSSWYYMRYMTPH-AKDPINKELVRQWFPVDQYIGG  543 (869)
Q Consensus       467 ~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~r~~dvld~w~dS~~~~~~~~~~~-~~~~~~~e~~~~~~P~D~~i~g  543 (869)
                      +.     ..|         -+..|++||..  +.+++||||||||||++++..++|. .+...+...++.+||++++++|
T Consensus       476 ~~-----~~g---------p~~~c~~CG~~f~l~qd~DVLDTWFSS~LWPfs~lGWpqekG~~~~~D~~~fyPt~~L~TG  541 (970)
T TIGR00422       476 KT-----NTG---------PKEVCDKCGSVFELEQDEDVLDTWFSSSLWPFSTLGWPQEKGDETEKDLKKFYPTDLLVTG  541 (970)
T ss_pred             HH-----CCC---------CCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCH
T ss_conf             10-----167---------6876634587423434877545323234458874688644567766889733887656530


Q ss_pred             CCCCCCCCHHHHHHHHHCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHCCCCCCCCCCCEECCCC
Q ss_conf             55443320234555320134787322--3200222235532322433235870013062022102567775441104897
Q gi|254780802|r  544 IEHAVLHLLYARFFAHILKKIGYIEI--DEPFKRLFTQGMVVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNS  621 (869)
Q Consensus       544 ~d~~~~~~~~~r~~~~~l~~~g~~~~--~~pf~~l~~~G~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  621 (869)
                      .|  ||+||.+||.+.++..+|.-.+  ..||+++++||||.|+                                    
T Consensus       542 ~D--IiFFWV~RMi~~~~~~tgDEnGkP~~PFk~v~ihGLVRDe------------------------------------  583 (970)
T TIGR00422       542 YD--IIFFWVARMILRSLALTGDENGKPQVPFKDVYIHGLVRDE------------------------------------  583 (970)
T ss_pred             HH--HHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCEEECC------------------------------------
T ss_conf             36--8899999998621554013586988782025865445558------------------------------------


Q ss_pred             EEEECCCCCCHHHCCCCCCCCCCCC-------------------------------------CCCHHHHHHHHHHCCC-C
Q ss_conf             0640474210000001222210012-------------------------------------3463356665530133-2
Q gi|254780802|r  622 KVVIGPLEKMSKSKKNVIDPMKVIK-------------------------------------SYGADTARLFVLSDSP-P  663 (869)
Q Consensus       622 ~~~~~~g~KMSKSkGNvi~p~~~i~-------------------------------------~yGaD~lRl~~~~~~~-~  663 (869)
                           +|+|||||+||||+|.|+|+                                     +||||||||||++.+. +
T Consensus       584 -----qG~KMSKSlGNvIdP~d~I~GI~L~dL~~K~~~~~l~P~~~eK~~~~~~~~fpnGI~~YGaDALR~~La~~~~G~  658 (970)
T TIGR00422       584 -----QGRKMSKSLGNVIDPLDVIEGISLDDLLEKRTGNMLQPQLAEKIKKGTKKSFPNGIPKYGADALRFTLASLVTGP  658 (970)
T ss_pred             -----CCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHCCHHHHHHHHHHCCCCC
T ss_conf             -----885122205683476986068870789999745777835899987643210323200206038999998358678


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC-------------CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf             111113432101145567788999997630246-------------6789756999999999999999998816889999
Q gi|254780802|r  664 DRDIIWSNKGVDSTYQFIQQIWRLIYNAKDELQ-------------TSSTKKDISLISKSTKFLERIEENYQNLSFNKAV  730 (869)
Q Consensus       664 ~~d~~~s~~~i~~~~rfl~kl~~l~~~~~~~~~-------------~~~~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai  730 (869)
                      |+|++|+++.+++++||+||+||..+++.-...             ...+..|+||||+|+++|+.+++++++|+|+.|.
T Consensus       659 G~Di~f~~~~v~~~~nF~NKlWNA~rF~l~~~~~~~~~~~~~~~~~~~~~l~drWILs~L~~~i~~v~~~ld~Y~F~~a~  738 (970)
T TIGR00422       659 GDDINFDWKRVESARNFANKLWNASRFVLMNLSDDTQDELELSGGEEKLSLADRWILSKLNRTIKEVREALDKYRFNEAA  738 (970)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf             98642118988767677678899999999600356676113577632013546999999999999999988403677887


Q ss_pred             HHHHHHH-HHHHHHHHHHCCCCCCCCH--------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC--CCEEECCCCC
Q ss_conf             9999999-9999999862110002217--------999999999999997223438999999982899--8355178866
Q gi|254780802|r  731 ANIHELV-NVISKPLMEIAKKKSNADR--------ISTIRYILEKLIIMMSPMIPHLAEECWQLLGNA--GLVAQQKWPK  799 (869)
Q Consensus       731 ~~i~~f~-n~ls~~y~~~~k~~~~~~~--------~~~l~~vl~~l~~lLaPi~PhiaEEiw~~Lg~~--~~i~~~~WP~  799 (869)
                      +.||+|+ ++||+||+|.+|.+.+.+.        ..+|..+|+.+++||||||||+||||||.+.+.  .||++++||+
T Consensus       739 ~~ly~F~W~dFCD~YIE~~K~~~~~~~~~~~k~~A~~~L~~vLd~~l~LLhPf~PF~tE~iwq~~~~~~~~si~~~~yP~  818 (970)
T TIGR00422       739 KALYEFIWNDFCDWYIELVKYRLYNGNDEAEKKAARDTLAYVLDKALRLLHPFMPFITEEIWQHLKEGEADSIMLQSYPE  818 (970)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf             57652101345123544214314789738999999999999999999985245522578999884361010422135765


Q ss_pred             CCHH
Q ss_conf             5967
Q gi|254780802|r  800 LDPI  803 (869)
Q Consensus       800 ~d~~  803 (869)
                      ++++
T Consensus       819 ~~~~  822 (970)
T TIGR00422       819 VDAE  822 (970)
T ss_pred             HHHH
T ss_conf             2334


No 5  
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00  E-value=0  Score=1312.66  Aligned_cols=693  Identities=24%  Similarity=0.404  Sum_probs=546.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCC--CCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             8765689998999999998598036--76788883899807789789874004779778999999777189855676881
Q gi|254780802|r    3 TRSYSPQETDSIWQSAWYDSNIFKA--ENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGW   80 (869)
Q Consensus         3 ~~~y~~~~iE~kwq~~W~~~~~fe~--~~~~~~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~   80 (869)
                      ..+|||++||++||++|+++++|++  +.++++|+|+|++|||||||.|||||++|+|++|+++||+||+||||+|||||
T Consensus         2 ~~~~~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~~~dgPPy~nG~lHiGH~~~~tikDii~Ry~rm~G~~V~~~~Gw   81 (1042)
T PRK06039          2 PSKPDFPAVEEEVLKFWKENDIFEKSIENREGGPEFVFYDGPPFANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGW   81 (1042)
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             89999889889999999868992463000699997899678998788721436687899999999987389966898974


Q ss_pred             CCCCHHHHHHHHHH-----------------CCCHHHHHHHHHHHHHHHHHHCCCEEECCCCEECCCHHHHHHHHHHHHH
Q ss_conf             40205899999980-----------------9999999999999999999981917664698214773599999999999
Q gi|254780802|r   81 DAFGMPAENAAREH-----------------NVHPKMWTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLD  143 (869)
Q Consensus        81 d~~GlPie~~~~e~-----------------~~~~~~~~~~~i~~~k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~  143 (869)
                      ||||||||.++++.                 ...|++++.++++.|++||+|||+|+||+|+|.||||.|++++||+|.+
T Consensus        82 D~hGLPiE~~vek~lgi~~k~~i~~~gi~~F~~~cr~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~e~v~~~F~~  161 (1042)
T PRK06039         82 DTHGLPVELEVEKELGISGKKDIEKYGIEKFNEECRESVLRYTDEWEEYTERLGRWVDFDNPYKTMDNSYMESVWWALKQ  161 (1042)
T ss_pred             CCCCHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHHHH
T ss_conf             86778999999998476676426552899999999999999999999999981820526898276898899999999999


Q ss_pred             HHHCCCEEECCEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             99889634122133214776767789898438533456432233475233430344454432100225543222221000
Q gi|254780802|r  144 FMKHNVIVRKTAQVNWDPVEQTVLANEQVINGRGWRSDAPVEQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKN  223 (869)
Q Consensus       144 L~~kGliyrg~~pV~wcp~~~t~la~~Ev~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~  223 (869)
                      |+++||||||.+||+|||+|+||||||||.+|+..+        ..+.                                
T Consensus       162 L~ekGliYrg~~~V~wcp~~~T~Lad~Ev~~~Y~~~--------~~~s--------------------------------  201 (1042)
T PRK06039        162 LYDKGLLYEGYRVVPYCPRCETPLSNHEVRQGYKEV--------KDPS--------------------------------  201 (1042)
T ss_pred             HHHCCCEEECCCEECCCCCCCCCCHHHHHHCCCEEE--------ECCE--------------------------------
T ss_conf             998799896271325489889881186730574441--------4464--------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCHHHHHCCHH---H-HHHHHHHHH-HHHHHH
Q ss_conf             14557675453555677777751365320013444323200330244320345413145---8-999886531-111245
Q gi|254780802|r  224 WIGRSEGMEIRWEIVSNTIDQIEEILVYTTRPETIFGASFIAIAVDHSISEKLSCDNTD---I-KEFCDEEKQ-KGTSLS  298 (869)
Q Consensus       224 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~TtrPeTl~g~~~i~v~~~~~~~~~~~~~~~~---~-~~~~~~~~~-~~~~~~  298 (869)
                             ..++|++.+   ..+.++++||||||||+|+++++|+|+.+|+......+.+   + ...+..... ......
T Consensus       202 -------~~vkF~l~~---~~~~~l~iwTTrPwTl~~n~avaV~Pd~~Y~~v~~~~~~e~~i~a~~~~~~~~~~~~~~~~  271 (1042)
T PRK06039        202 -------VYVKFKLKG---EENEYLLAWTTTPWTLPSNLALAVGPDIDYVKVRDKGGGEVYILAEALLEKVLKKEGGEEY  271 (1042)
T ss_pred             -------EEEEEEEEC---CCCCEEEEECCCCCCCCCCEEEEECCCCCEEEEEECCCCEEEEEEHHHHHHHHHHCCCCCE
T ss_conf             -------999999752---7984799865887511113599986876369998448975999808889999855167540


Q ss_pred             HHHHHCCCCCCCCCEECCCCC------CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCC
Q ss_conf             554302553237861037777------74157763112345453332221113467211012210354432101677655
Q gi|254780802|r  299 VLDKTEKKGIYTGIHVKHPLN------PNVVIPVYIANFVFMNYGTGAIFGCPFADQRDMDFAKKYGLPIIPIMKRSINH  372 (869)
Q Consensus       299 ~~~~~~~~~~~~G~~~~~P~~------~~~~ipv~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~k~glpi~~v~~~~~~~  372 (869)
                      .+....++.+|+|+.|.||+.      ....+||++++||+++.|||+||+|||||++||+++++||||++.+++..+.+
T Consensus       272 ~v~~~~~G~~L~G~~y~~p~~~~~~~~~~~~~~Vi~~d~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~vd~~G~~  351 (1042)
T PRK06039        272 EVLETFKGEELEGLRYEPPFPYFVPEDEENAFRVVAADFVTTEDGTGIVHIAPAFGEDDFEVGKKYGLPVVCPVDDNGRF  351 (1042)
T ss_pred             EEEEEEECHHHCCCEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf             78877512430788877886432366778742799547205788974289678898899999998399866631775533


Q ss_pred             CCCCCC-------------------HHHCCCCCCCCCCHHHCCCC---------------HHHHHHHHHHHHHHHCCCCC
Q ss_conf             542221-------------------12101233445830001356---------------46654888999974046775
Q gi|254780802|r  373 SQDIEE-------------------GKAFSGDGIMINSSFLDGMT---------------NTEALQAVMSHLEKQNIKNS  418 (869)
Q Consensus       373 ~~~~~~-------------------~~~~~~~~~~~~~~~~~g~~---------------~~~~~~~i~~~l~~~~~~~~  418 (869)
                      +..+.+                   .+.+...+.+.|+.+++|++               +++.++.+++...+.++.+.
T Consensus       352 ~~~~~~~~G~~v~da~~~Ii~~L~~~g~l~~~~~~~Hsyp~cwR~~~pli~~~~~QWFi~~~~~k~~~l~~~~~i~w~P~  431 (1042)
T PRK06039        352 TEEVPDYAGKFVKDADKEIIRDLKERGLLFKAETYEHSYPHCWRCDTPLIYRAVESWFIRVTKIKDRMLELNQKINWYPE  431 (1042)
T ss_pred             CCCCCCCCCCEEECCHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCEEECC
T ss_conf             46443517936530209999999866752246633557874257798148633262776557679999998602147345


Q ss_pred             CHHHHHHHH---HCCCCCCCCCCCCCCCCCCCCCCCCCCEECCC--CCCCHHHHCCCCCCCCCCCCCHHHHH---HHHHH
Q ss_conf             202221110---00111221123222223422333468463474--20001110010002245421002456---42110
Q gi|254780802|r  419 PIGKRKINF---RLRDWCISRQRSWGCPIPVIHCQKCGIVELPK--EDLPVQLPEDLDFTLPGNPLENHPTW---KKIFC  490 (869)
Q Consensus       419 ~~~~~~~~~---~l~DW~ISRqr~WG~piPv~~~~~~~~~~~~~--~~l~v~~~~d~~~~~~~~~l~~~~~~---~~~~~  490 (869)
                      ..+..+...   .++|||||||||||+|||||+|++|+.+.+..  +++.....       ...+..-+.+|   ....|
T Consensus       432 ~~~~~rf~~wl~n~~DW~ISRQR~WG~PIPvw~~~~~~~~~v~~s~~el~~~~~-------~~~~~dlhrp~iD~v~~~~  504 (1042)
T PRK06039        432 HIKDGRFGKWLENARDWAISRNRYWGTPLPIWRCEDCGRIDVIGSIEELEEDFG-------VPKPIDLHRPYIDEVTLPC  504 (1042)
T ss_pred             CCCCCHHHHHHHHCCCHHHHCCCCCCCCCEEEEECCCCCEEECCCHHHHHHHCC-------CCCCCHHCCCCCCCEEECC
T ss_conf             232006999986363311000234577540699679996670286999987608-------8883010245455056558


Q ss_pred             CCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf             136764435643234566643-3322335556544101356641143344014555443320234555320134787322
Q gi|254780802|r  491 VKCGSEALRETDTMDTFVDSS-WYYMRYMTPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIGYIEI  569 (869)
Q Consensus       491 ~~~~~~~~r~~dvld~w~dS~-~~~~~~~~~~~~~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~g~~~~  569 (869)
                      +.|+..+.|++||||+||||| |+++....|..    +++.+++|||+|++++|.||+       |+|+++++.++++..
T Consensus       505 ~~~~~~~~r~~DvlD~WfdSg~~p~a~~~~p~~----~~~~f~~~~PaD~i~eg~Dq~-------RgWF~sl~~~s~~~~  573 (1042)
T PRK06039        505 PDCGTGMRRVPDVLDVWFDSGSMPYAQLHYPFE----NKELFEEHFPADFIVEGIDQT-------RGWFYTLLALSTALF  573 (1042)
T ss_pred             CCCCCCCCCCCCCEEEEEECCCCCEEEECCCCC----CHHHHHCCCCCEEEEECCCHH-------EEEEEEEEEEEEEEC
T ss_conf             998621030564212376358744069778643----666662158644445232221-------014360003212234


Q ss_pred             -CCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCCCCC
Q ss_conf             -3200222235532322433235870013062022102567775441104897064047421000000122221001234
Q gi|254780802|r  570 -DEPFKRLFTQGMVVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSY  648 (869)
Q Consensus       570 -~~pf~~l~~~G~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~~y  648 (869)
                       ..||+++++||+|+++                                         +|+|||||+||+|+|.++|++|
T Consensus       574 ~~~Pfk~v~~~G~Vld~-----------------------------------------~G~KMSKS~GNvidP~~vi~~y  612 (1042)
T PRK06039        574 DRPPYKNVIVHGHVLDE-----------------------------------------DGQKMSKSLGNYVDPFEVFDKY  612 (1042)
T ss_pred             CCCCCCEEEEEEEEECC-----------------------------------------CCEECCCCCCCCCCHHHHHHHC
T ss_conf             84200258995038736-----------------------------------------8648033678868979998860


Q ss_pred             CHHHHHHHHHHCCCCCCCCCCCCCCHH-HHHHHHHHHHHHHHH-----HHCCCCCC--------CCHHHHHHHHHHHHHH
Q ss_conf             633566655301332111113432101-145567788999997-----63024667--------8975699999999999
Q gi|254780802|r  649 GADTARLFVLSDSPPDRDIIWSNKGVD-STYQFIQQIWRLIYN-----AKDELQTS--------STKKDISLISKSTKFL  714 (869)
Q Consensus       649 GaD~lRl~~~~~~~~~~d~~~s~~~i~-~~~rfl~kl~~l~~~-----~~~~~~~~--------~~~~D~~ils~~~~~i  714 (869)
                      |||+||||+++.+.+++|++||++++. .+++|++++||.+.+     +.+.+.+.        ...+|+||+|+++.++
T Consensus       613 GADalRl~l~~~~~~~~d~~f~~~~v~e~~r~~~~~lwN~~rF~~~y~~ld~f~~~~~~~~~~~~~~~DrWils~l~~~i  692 (1042)
T PRK06039        613 GADALRWYLLSSSVPWEDLRFSEDGIREVVRKFLLPLWNVYSFFALYANLDGFDPNEAEEALDSRNELDRWILSRLNSLV  692 (1042)
T ss_pred             CCHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             82799999996677555615779999999999999999999999874210279954355563216687899999999999


Q ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC--------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC
Q ss_conf             99999988168899999999999999999986211000221--------7999999999999997223438999999982
Q gi|254780802|r  715 ERIEENYQNLSFNKAVANIHELVNVISKPLMEIAKKKSNAD--------RISTIRYILEKLIIMMSPMIPHLAEECWQLL  786 (869)
Q Consensus       715 ~~v~~~~e~~~f~~ai~~i~~f~n~ls~~y~~~~k~~~~~~--------~~~~l~~vl~~l~~lLaPi~PhiaEEiw~~L  786 (869)
                      +.|+++|++|+|++|++.+++|+++||+||++++|+|.+.+        +..||+++|..+++|||||+||+||||||.|
T Consensus       693 ~~v~~~~~~y~~~~a~~~l~~Fi~dLs~wYi~~~r~R~~~~~~~~~k~~A~~tL~~vL~~l~~llAP~~PFitEeiyq~L  772 (1042)
T PRK06039        693 KEVTEALDNYDITKAARAIRDFVDDLSNWYIRRSRRRFWKEEDDPDKLAAYNTLYTVLETLSRLMAPFTPFIAEEIYQNL  772 (1042)
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC
T ss_conf             99999997245999999999999887799999977876036897899999999999999999996501367699999844


Q ss_pred             ---CCCCCEEECCCCCCCHHH
Q ss_conf             ---899835517886659678
Q gi|254780802|r  787 ---GNAGLVAQQKWPKLDPIL  804 (869)
Q Consensus       787 ---g~~~~i~~~~WP~~d~~~  804 (869)
                         +..+|||+++||++|+.+
T Consensus       773 ~~~~~~eSVHl~~~P~~~~~~  793 (1042)
T PRK06039        773 KGETGPESVHLADWPEVDESL  793 (1042)
T ss_pred             CCCCCCCEEEEECCCCCCHHH
T ss_conf             558999517981467766121


No 6  
>KOG0435 consensus
Probab=100.00  E-value=0  Score=1310.52  Aligned_cols=815  Identities=42%  Similarity=0.772  Sum_probs=719.9

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
Q ss_conf             89998999999998598036767888838998077897898740047797789999997771898556768814020589
Q gi|254780802|r    8 PQETDSIWQSAWYDSNIFKAENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPA   87 (869)
Q Consensus         8 ~~~iE~kwq~~W~~~~~fe~~~~~~~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPi   87 (869)
                      .+.||+.|+++|++...|..+.+.+++| ||+.+||||+|.|||||.|.|||.|++|||+||+||||++|||||.+|||+
T Consensus        32 ~~~iEk~W~~~~~~~~~~~~~~d~sk~K-YiLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGLPA  110 (876)
T KOG0435          32 IAMIEKHWKQYLKDGFPFSKDSDKSKKK-YILSMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGLPA  110 (876)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCC-EEEEECCCCCCCCCCCCEEEEEEHHHHHHHHHHCCCEEECCCCCCCCCCCH
T ss_conf             7777788999875378665634357873-699736788876112642799725889999985486421577630348835


Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCC
Q ss_conf             99999809999999999999999999981917664698214773599999999999998896341221332147767677
Q gi|254780802|r   88 ENAAREHNVHPKMWTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVL  167 (869)
Q Consensus        88 e~~~~e~~~~~~~~~~~~i~~~k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~pV~wcp~~~t~l  167 (869)
                      |++|+|++++|+.|+.++|+.||+|+++||+++||+|+..|++|+||+|+||+|.+|+++||.||.+.+|||||.++|+|
T Consensus       111 ENAAiergv~P~sWT~~NI~~Mk~Ql~~lg~~FDWdrEiSTC~PdYYKWTQwiFlkLfe~GLAYq~Ea~VNWDPvD~TVL  190 (876)
T KOG0435         111 ENAAIERGVHPASWTINNIAKMKQQLKSLGISFDWDREISTCEPDYYKWTQWIFLKLFEKGLAYQAEAEVNWDPVDKTVL  190 (876)
T ss_pred             HHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEE
T ss_conf             66787548892054698999999999973760124553234783156789999999997112211135366572012153


Q ss_pred             CHHHH-HCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             89898-43853345643223347523343034445443210022554322222100014557675453555677777751
Q gi|254780802|r  168 ANEQV-INGRGWRSDAPVEQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIRWEIVSNTIDQIE  246 (869)
Q Consensus       168 a~~Ev-~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  246 (869)
                      |+.+| .+|.+||+|++||++.+.|||+++++|+.+|++++++|.+||+ |+.||+||||+++|+++.|++.+.... ++
T Consensus       191 AnEQVD~~G~SWRSGA~VEkK~LrQWfikttaYAk~L~d~L~~L~~W~~-vk~mQrnWIG~~~G~el~F~ll~~~~~-de  268 (876)
T KOG0435         191 ANEQVDADGCSWRSGAKVEKKKLRQWFIKTTAYAKRLLDGLETLPEWPE-VKDMQRNWIGRCDGAELMFPLLDDGSN-DE  268 (876)
T ss_pred             CCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCCCCCEEEEEEECCCCCC-CC
T ss_conf             2201035575534565465778888986316889999999875030166-899987431245420798783268778-74


Q ss_pred             EEEEEEECCCCCCCCCEEEEECCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEEEE
Q ss_conf             36532001344432320033024432034541314589998865311112455543025532378610377777415776
Q gi|254780802|r  247 EILVYTTRPETIFGASFIAIAVDHSISEKLSCDNTDIKEFCDEEKQKGTSLSVLDKTEKKGIYTGIHVKHPLNPNVVIPV  326 (869)
Q Consensus       247 ~l~~~TtrPeTl~g~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~P~~~~~~ipv  326 (869)
                      .|.++|||||||||+++++++++|.++.+..    .++++.....           .+.+|.+.+.+++||++++ .+||
T Consensus       269 ~ltv~Tt~Petl~~~~f~vl~~~H~L~~~~~----~lkefl~~~~-----------l~~Kg~~lp~~A~Np~tg~-~iPv  332 (876)
T KOG0435         269 ILTVYTTRPETLFGASFLVLAPSHSLLDKDS----SLKEFLSKSD-----------LPQKGVQLPCQAKNPVTGR-AIPV  332 (876)
T ss_pred             EEEEEECCCHHHCCCEEEEECCCCHHHHHHC----HHHHHHHHHH-----------CCCCCCCCCEEECCCCCCC-EEEE
T ss_conf             5899945824422625799737754665303----3877644443-----------2366753541431677776-2017


Q ss_pred             EECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCC-CCHHHHHHH
Q ss_conf             3112345453332221113467211012210354432101677655542221121012334458300013-564665488
Q gi|254780802|r  327 YIANFVFMNYGTGAIFGCPFADQRDMDFAKKYGLPIIPIMKRSINHSQDIEEGKAFSGDGIMINSSFLDG-MTNTEALQA  405 (869)
Q Consensus       327 ~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~k~glpi~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~  405 (869)
                      +.+++|....|||+||++|+|+.+|++++++.|+..+..+..  .+..          .+....+....+ +.+++|..+
T Consensus       333 ~~a~~v~~~~gt~a~m~~P~hd~rD~ela~~~~~~~~~~~~~--~f~~----------~~K~~~~~~~tn~~~~q~a~~~  400 (876)
T KOG0435         333 VVADYVLDPYGTGAVMGAPGHDQRDKELAQKIGIKWIICIEV--IFTN----------FGKKNEQKAFTNLDIRQNAALK  400 (876)
T ss_pred             EEECHHCCCCCCCEEEECCCCCCCHHHHHHCCCCEEEEEEEE--EECC----------HHHHHCCCCCCCHHHHHHHHHH
T ss_conf             985101367776104536676641068886346406888743--2156----------2443202255415578889999


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCHHHHH
Q ss_conf             89999740467752022211100011122112322222342233346846347420001110010002245421002456
Q gi|254780802|r  406 VMSHLEKQNIKNSPIGKRKINFRLRDWCISRQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTW  485 (869)
Q Consensus       406 i~~~l~~~~~~~~~~~~~~~~~~l~DW~ISRqr~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l~~~~~~  485 (869)
                      +.+..+..++     |+.+++++|+||.||||||||+||||.+|++||.+++|+++|||.+|+-..|+..|+||+....|
T Consensus       401 l~~~~~~~g~-----g~~~vs~kLkDWLiSRQRyWGTPIPivhc~~cG~vpVpes~LPV~LP~l~~~~~kG~Pls~~~e~  475 (876)
T KOG0435         401 LFQFAERKGV-----GGYVVSYKLKDWLISRQRYWGTPIPIVHCDDCGAVPVPESELPVTLPELNDFTPKGPPLSKADEW  475 (876)
T ss_pred             HHHHHHHCCC-----CCCEECCHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf             9999874378-----76232113355643222216898645876788864575887885465312357889964123656


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf             42110136764435643234566643332233555654-41013566411433440145554433202345553201347
Q gi|254780802|r  486 KKIFCVKCGSEALRETDTMDTFVDSSWYYMRYMTPHAK-DPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKI  564 (869)
Q Consensus       486 ~~~~~~~~~~~~~r~~dvld~w~dS~~~~~~~~~~~~~-~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~  564 (869)
                      .++.|++||..+.||+|+||+|+||+|||+||++|++. .|++++..++|+|||+||+|.+|+++|++|+|||+++|+++
T Consensus       476 vn~~cP~cg~pAkRETDTMDTFvDSsWYYlRylDpkN~e~~~d~a~a~k~MPVDvYIGG~EHAvlHLlYaRF~~kFl~di  555 (876)
T KOG0435         476 VNVDCPRCGEPAKRETDTMDTFVDSSWYYLRYLDPKNPEEPFDKAKAKKNMPVDVYIGGKEHAVLHLLYARFIAKFLKDI  555 (876)
T ss_pred             EECCCCCCCCCCCCCCCCCCHHHCCCEEEEEECCCCCCCCCCCHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHC
T ss_conf             13568667996434555410010031356762378985454425565326861588554899999999999999987552


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCC
Q ss_conf             87322320022223553232243323587001306202210256777544110489706404742100000012222100
Q gi|254780802|r  565 GYIEIDEPFKRLFTQGMVVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKV  644 (869)
Q Consensus       565 g~~~~~~pf~~l~~~G~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~  644 (869)
                      |.+...|||++|++||||++..++.++  +|+|+.|.++....-.+  ..+.+...+.++....+||||||+|+|+|.++
T Consensus       556 ~~~~t~EPF~~Li~QGmV~G~tf~~~~--sG~yl~~~ev~~~nd~~--~~~vlk~~~e~~v~t~eKMSKSK~NGVdP~~~  631 (876)
T KOG0435         556 GVVSTAEPFTKLITQGMVRGKTFRTKE--SGKYLGPEEVQQVNDHQ--NKFVLKNDKEVVVVTYEKMSKSKHNGVDPADV  631 (876)
T ss_pred             CCCCCCCCHHHHHHHHCCCCEEEECCC--CCCCCCHHHHHHHCCCC--CEEEECCCCCCEEEEHHHHHHCCCCCCCHHHH
T ss_conf             877688748888751000341786277--77627877766634776--63575379950354488732023579898999


Q ss_pred             CCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC----C-------CCCCHHHHHHHHHHHHH
Q ss_conf             123463356665530133211111343210114556778899999763024----6-------67897569999999999
Q gi|254780802|r  645 IKSYGADTARLFVLSDSPPDRDIIWSNKGVDSTYQFIQQIWRLIYNAKDEL----Q-------TSSTKKDISLISKSTKF  713 (869)
Q Consensus       645 i~~yGaD~lRl~~~~~~~~~~d~~~s~~~i~~~~rfl~kl~~l~~~~~~~~----~-------~~~~~~D~~ils~~~~~  713 (869)
                      +.+||+|++|+|+++++|+.++++|+++.+.|+.|+++|+|++.....+.-    .       ......++.+.+..|.+
T Consensus       632 v~~yG~D~tRl~ilf~ap~~~~~nW~es~i~Gi~rwl~riw~l~~~~~~ar~~g~~~d~~~~td~~dae~~kl~~~~n~f  711 (876)
T KOG0435         632 VLEYGVDTTRLYILFAAPPRDPINWNESAIPGIKRWLQRIWALVSQILQARDDGKAKDLKKLTDGFDAETRKLKETYNFF  711 (876)
T ss_pred             HHHHCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             98848317789998617865666666332454999999999998877777752786556544443313678999999999


Q ss_pred             HHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCE
Q ss_conf             999999988168-8999999999999999999862110002217999999999999997223438999999982899835
Q gi|254780802|r  714 LERIEENYQNLS-FNKAVANIHELVNVISKPLMEIAKKKSNADRISTIRYILEKLIIMMSPMIPHLAEECWQLLGNAGLV  792 (869)
Q Consensus       714 i~~v~~~~e~~~-f~~ai~~i~~f~n~ls~~y~~~~k~~~~~~~~~~l~~vl~~l~~lLaPi~PhiaEEiw~~Lg~~~~i  792 (869)
                      |++|+++||.-. +|+|++.+|.|.|.|.+-+.....      ........|+.+++||+|++||+|+|+|+.|++..+.
T Consensus       712 i~~vt~~~e~~~slNtaIS~~m~ltN~l~~a~k~~~~------h~~~~~~al~~lv~mlaP~aPh~asE~Ws~l~~~~~~  785 (876)
T KOG0435         712 IKQVTEHYEVLFSLNTAISDMMGLTNALKKALKIVLV------HSPEFERALEALVIMLAPFAPHVASELWSALANDLSW  785 (876)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCC
T ss_conf             9875678888888889999999887899875233411------4737889999999997125754589999998422401


Q ss_pred             -EECCCCCCCHHHHHCCCCEEEEEECCEEEEEEECCCC-CCH--HHHHHHHHCCHHHHHHHCCCCCEEEEECC-CCEEEE
Q ss_conf             -5178866596786037714989973816679980888-899--99999997478889984699825999818-905757
Q gi|254780802|r  793 -AQQKWPKLDPILEVNTDIILPIQVNGKKRACITVSMN-TDD--DFIKKTVLELNVIKNILQGKSPKKIIIIS-KRIVNI  867 (869)
Q Consensus       793 -~~~~WP~~d~~~~~~~~~~~~iqingk~r~~i~v~~~-~~~--~~i~~~~~~~~~i~~~l~~k~~~k~I~v~-~klin~  867 (869)
                       ....||++|+.++.+.+ .++||||||.|.++++... +++  +++...+++.+.+...+.|++|||-+|+| .||||+
T Consensus       786 ~~~~~WP~vd~~~~~~~~-~~~v~INGk~~g~i~v~~~~l~~~~d~~~e~a~~~e~~~ryL~gkkIkks~~~~r~kiin~  864 (876)
T KOG0435         786 VSDVKWPEVDPDYLIEFE-VLPVQINGKVRGKIEVDRRILEEMMDDALEFALQTEDGRRYLKGKKIKKSFYVPRRKIINF  864 (876)
T ss_pred             HHCCCCCCCCHHHHCCCC-EEEEEECCEECCEEECCHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHEECHHHHHHHH
T ss_conf             311677657844640520-2358985783646624667887778899999860778888863750554200206778888


Q ss_pred             EC
Q ss_conf             79
Q gi|254780802|r  868 VV  869 (869)
Q Consensus       868 vi  869 (869)
                      ++
T Consensus       865 i~  866 (876)
T KOG0435         865 IL  866 (876)
T ss_pred             HH
T ss_conf             87


No 7  
>TIGR00392 ileS isoleucyl-tRNA synthetase; InterPro: IPR002301   The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases .    Isoleucyl-tRNA synthetase (6.1.1.5 from EC) is an alpha monomer that belongs to class Ia. The enzyme, isoleucyl-transfer RNA synthetase, activates not only the cognate substrate L-isoleucine but also the minimally distinct L-valine in the first, aminoacylation step. Then, in a second, "editing" step, the synthetase itself rapidly hydrolyzes only the valylated products ,  as shown from the crystal structures. ; GO: 0000166 nucleotide binding, 0004822 isoleucine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006428 isoleucyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=100.00  E-value=0  Score=1310.09  Aligned_cols=715  Identities=24%  Similarity=0.378  Sum_probs=568.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCCC--CCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             88765689998999999998598036--7678888389980778978987400477977899999977718985567688
Q gi|254780802|r    2 ETRSYSPQETDSIWQSAWYDSNIFKA--ENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMG   79 (869)
Q Consensus         2 ~~~~y~~~~iE~kwq~~W~~~~~fe~--~~~~~~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G   79 (869)
                      .-+.+||+.+|+++|++|+++++|+.  +.++++++|+|+||||||||.||+|||+|++|||+|+||++|+||+|.|.||
T Consensus         2 ~~~~~nl~~~E~~~~~~W~~~dif~~~~~~~~~~~~F~lhDGPPYAnG~iHlGHalNKilKDii~Ryk~m~G~~v~~~pG   81 (938)
T TIGR00392         2 FPMRGNLSKREEKILKFWQEKDIFEKVKKRNKDKPEFVLHDGPPYANGAIHLGHALNKILKDIILRYKTMQGYNVTYKPG   81 (938)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEECCCCCC
T ss_conf             88778821257577766778999999998508998358744858767997402556667611232101122500320478


Q ss_pred             CCCCCHHHHHHHHH------------------HCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCEECCCHHHHHHHHHHH
Q ss_conf             14020589999998------------------099999999999999999999819176646982147735999999999
Q gi|254780802|r   80 WDAFGMPAENAARE------------------HNVHPKMWTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLF  141 (869)
Q Consensus        80 ~d~~GlPie~~~~e------------------~~~~~~~~~~~~i~~~k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f  141 (869)
                      |||||||||.++++                  .+..||++|.++++.|++||+|||+|+||+++|.|||+.|++.+||+|
T Consensus        82 WDtHGLPIE~~Vek~lg~~~~~~~~~~~g~E~fr~~Cr~~A~~~~~~q~~~F~rLG~w~Dwe~pY~T~d~~y~~~~w~~l  161 (938)
T TIGR00392        82 WDTHGLPIELKVEKKLGISGKKEIESLEGIEEFREKCREFALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLL  161 (938)
T ss_pred             CCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCCCCCCCCHHHHHHHHHHH
T ss_conf             66578702445640478764000220443899999999999999999998888531202255785067889999999999


Q ss_pred             HHHHHCCCEEECCEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             999988963412213321477676778989843853345643223-3475233430344454432100225543222221
Q gi|254780802|r  142 LDFMKHNVIVRKTAQVNWDPVEQTVLANEQVINGRGWRSDAPVEQ-RSLPQWFFKISDLSQELLDSIETLSEWPEKVKIM  220 (869)
Q Consensus       142 ~~L~~kGliyrg~~pV~wcp~~~t~la~~Ev~~g~~~~~~~~v~~-~~~~~~~~~~~~~~~~l~~~~~~l~~~p~~v~~~  220 (869)
                      .+|++||||||+.+||+|||+|+||||+|||++++++|      + ++.|++|.+++-..+.....              
T Consensus       162 ~~~~eKGL~~~~~kpv~WSp~~~TaLAeaE~ey~~~Y~------d~v~dpS~yv~F~~~~~~~~~r--------------  221 (938)
T TIGR00392       162 KELHEKGLLYRGLKPVYWSPRCETALAEAEVEYKEEYK------DNVKDPSIYVKFPVKKDSKTER--------------  221 (938)
T ss_pred             HHHHHCCCEEECCEEECCCCCCCCHHHHHHHCCCCCCC------CCCCCCEEEEEEEEECCCHHHH--------------
T ss_conf             99975242022552211441446702476305887321------5760622889875315612567--------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCHHHHHC----CHHH----HHHHHHHHH
Q ss_conf             00014557675453555677777751365320013444323200330244320345413----1458----999886531
Q gi|254780802|r  221 QKNWIGRSEGMEIRWEIVSNTIDQIEEILVYTTRPETIFGASFIAIAVDHSISEKLSCD----NTDI----KEFCDEEKQ  292 (869)
Q Consensus       221 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~TtrPeTl~g~~~i~v~~~~~~~~~~~~~----~~~~----~~~~~~~~~  292 (869)
                              . +.+.   .+........|+|||||||||++|.+|||+||.+|+......    ..+.    ...++....
T Consensus       222 --------h-~~~~---~~~~n~~~~~l~iWTTTPWTLPaN~Aiav~pd~eY~~~~~~~~y~g~~~~~i~a~~L~e~l~~  289 (938)
T TIGR00392       222 --------H-AKVK---LSGVNGLDISLVIWTTTPWTLPANLAIAVHPDFEYALVQLETDYSGKEEYLILAKKLVEKLLN  289 (938)
T ss_pred             --------H-HHHH---CCCCCCCCCEEEEECCCCCHHHHHHHEEECCCEEEEEEEECCCCCCCEEEEEEHHHHHHHHHH
T ss_conf             --------8-8742---687578886899966887144664160114450689998668746631255512567898864


Q ss_pred             -HHH----HHHHHHHHCCCCCCCCCEECCCCCCCEE--------------------EEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             -111----2455543025532378610377777415--------------------776311234545333222111346
Q gi|254780802|r  293 -KGT----SLSVLDKTEKKGIYTGIHVKHPLNPNVV--------------------IPVYIANFVFMNYGTGAIFGCPFA  347 (869)
Q Consensus       293 -~~~----~~~~~~~~~~~~~~~G~~~~~P~~~~~~--------------------ipv~~~~~V~~~~GTG~V~~~P~h  347 (869)
                       .+.    .-..+.++.++..|.|+.|+|||.....                    .-|+.|+||+.+.||||||+||||
T Consensus       290 ~~g~~h~~~~~e~~~~~kG~~Le~l~Y~hpl~~~~~~~~~m~~~~L~~~~~~~e~~~~v~~gdhVT~~~GTG~VHtAPgh  369 (938)
T TIGR00392       290 KLGVEHDITDYEIIKTFKGSDLEGLEYEHPLYDKVSQLKGMVVEELIERVDEKEGAPVVIGGDHVTTEDGTGIVHTAPGH  369 (938)
T ss_pred             HCCCCCCCCCEEEEEEECCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCEEECCCCCEEEECCCCC
T ss_conf             21553453110786555164416524652665322011563252322310689864489840045468897226878898


Q ss_pred             CCCCCHHHHCCCC--CCCCCCCCCCCCCCCCCC---------H-H--HCC-----------C----------------CC
Q ss_conf             7211012210354--432101677655542221---------1-2--101-----------2----------------33
Q gi|254780802|r  348 DQRDMDFAKKYGL--PIIPIMKRSINHSQDIEE---------G-K--AFS-----------G----------------DG  386 (869)
Q Consensus       348 ~~~D~~~~~k~gl--pi~~v~~~~~~~~~~~~~---------~-~--~~~-----------~----------------~~  386 (869)
                      |++||.+|+||||  ++..++|+.|.+...+..         + .  .+.           +                .+
T Consensus       370 G~eDy~~g~kygl~~e~~~pvD~~G~y~~~~~~~~G~~v~~~d~~yi~~~~R~V~~Ayd~~An~~I~~~L~~~~~Ll~~e  449 (938)
T TIGR00392       370 GEEDYEIGKKYGLPDEVLSPVDEKGVYTEEVADFKGRFVKDADKDYIIIKGRYVKDAYDDEANKIIIEQLKDKGLLLKAE  449 (938)
T ss_pred             CHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCEEEECCCCEEEECCCEEECHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf             73289999982898643146687760336677744541664487224543741000433468999999984269778876


Q ss_pred             CCCCCHHHCCC---------------CH--HHHHHHHHHHHHHHCCCCCCHHHHHHHHHC---CCCCCCCCCCCCCCCCC
Q ss_conf             44583000135---------------64--665488899997404677520222111000---11122112322222342
Q gi|254780802|r  387 IMINSSFLDGM---------------TN--TEALQAVMSHLEKQNIKNSPIGKRKINFRL---RDWCISRQRSWGCPIPV  446 (869)
Q Consensus       387 ~~~~~~~~~g~---------------~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l---~DW~ISRqr~WG~piPv  446 (869)
                      .+.|+++++|+               ..  ++.+..+++.+++-.+-+.+.|..|...++   +||||||||+||+|||+
T Consensus       450 ~i~H~YPhcWRtk~P~IYRAt~QWF~~~D~~~~k~~~L~~i~~v~W~P~~~k~~R~~~~~~n~~DWcISRQR~WG~PIP~  529 (938)
T TIGR00392       450 KITHSYPHCWRTKTPVIYRATEQWFIKIDEKKIKDQMLEEIKKVKWVPEWGKEGRFKNWLENRKDWCISRQRYWGVPIPV  529 (938)
T ss_pred             EEECCCCCCCCCCCCEEEECCCCCEEECCHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHCCCCCEEECCCCCCCCCEE
T ss_conf             65505877077898457204722146635477789999862832761463221467887611676526335625897406


Q ss_pred             CCCCCCCCE--ECCC--CCC---C-HHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC-CCCCCC
Q ss_conf             233346846--3474--200---0-111001000224542100245642110136764435643234566643-332233
Q gi|254780802|r  447 IHCQKCGIV--ELPK--EDL---P-VQLPEDLDFTLPGNPLENHPTWKKIFCVKCGSEALRETDTMDTFVDSS-WYYMRY  517 (869)
Q Consensus       447 ~~~~~~~~~--~~~~--~~l---~-v~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~dvld~w~dS~-~~~~~~  517 (869)
                      |+|++|+..  .+.+  +++   . ++-..+.|+..-+.++-   +.....|.+|+++|.|++|||||||||| .+++..
T Consensus       530 w~~e~~~~~~l~~~gsi~el~~~~~~~~G~~~w~~d~~~~~~---d~~~~~~~~g~~~y~r~~DvlDVWFDSGs~~~A~~  606 (938)
T TIGR00392       530 WYCEDTGEPVLIVVGSIEELEELIEVEKGIDAWFEDLHKDLL---DKITLESGSGGGEYRRVPDVLDVWFDSGSMPYAVL  606 (938)
T ss_pred             EEECCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCC---CCCCCCCCCCCCCEEEECEEEEEECCCCHHHHHHH
T ss_conf             886678832677604089999999987256632223444457---74134588998425871215545114001179986


Q ss_pred             CCCCCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             5556544101356641143344014555443320234555320134787322---3200222235532322433235870
Q gi|254780802|r  518 MTPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIGYIEI---DEPFKRLFTQGMVVHETYYQLEGIK  594 (869)
Q Consensus       518 ~~~~~~~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~g~~~~---~~pf~~l~~~G~v~~~~~~~~~~~~  594 (869)
                      ..     +.+.+.++..+|||+|+||+||+       |+|+++++.+|++..   ..|||+|++||+++|+         
T Consensus       607 ~~-----~~~~~~~~~~~pAD~i~EG~DQ~-------RGWFySsl~~~~~~~nv~~~PYK~Vi~hGF~LDe---------  665 (938)
T TIGR00392       607 HY-----PFENEKFKEVFPADFILEGSDQT-------RGWFYSSLLIGVALFNVGKAPYKNVITHGFTLDE---------  665 (938)
T ss_pred             HC-----CCCCHHHCCCCCCEEEEECCCCC-------CHHHHHHHHHHHHHHCCCCCCCCEEEECCEEECC---------
T ss_conf             32-----32100103578302686033555-------3277999999999870788543634531548857---------


Q ss_pred             CEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCCC--------CCCHHHHHHHHHHC-CCCCC
Q ss_conf             0130620221025677754411048970640474210000001222210012--------34633566655301-33211
Q gi|254780802|r  595 KKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIK--------SYGADTARLFVLSD-SPPDR  665 (869)
Q Consensus       595 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~--------~yGaD~lRl~~~~~-~~~~~  665 (869)
                                                      +|+|||||+||||+|.++|+        +||||+||||+++. +.++.
T Consensus       666 --------------------------------~G~KMSKSlGNvV~P~~v~~G~~N~~~P~yGAD~LRlyv~~~P~~~~~  713 (938)
T TIGR00392       666 --------------------------------KGRKMSKSLGNVVDPEKVINGDENLKLPKYGADILRLYVASSPSDYWE  713 (938)
T ss_pred             --------------------------------CCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCHH
T ss_conf             --------------------------------785445325870385997088433588753304877778846874000


Q ss_pred             CCCCCCCCHHHHHH----HHHHHHHHHH--HHHCCCCCCC--------CHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf             11134321011455----6778899999--7630246678--------97569999999999999999988168899999
Q gi|254780802|r  666 DIIWSNKGVDSTYQ----FIQQIWRLIY--NAKDELQTSS--------TKKDISLISKSTKFLERIEENYQNLSFNKAVA  731 (869)
Q Consensus       666 d~~~s~~~i~~~~r----fl~kl~~l~~--~~~~~~~~~~--------~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai~  731 (869)
                      |+.|+++.+..+.+    .++++++|+.  ++.+.+++..        ..+|+|||++++.+++.|+++||+|+|.++++
T Consensus       714 Dl~~~~~~~~~v~~~~~~~~~N~~~Fl~~YanL~~f~p~~~~~~~~~~~~~Drw~L~~l~~l~~~v~~~~e~Y~f~~~~~  793 (938)
T TIGR00392       714 DLRFSDEILKQVAEKYRKIRWNTYRFLLTYANLDKFDPEEKAVAVEKFRELDRWILSRLNSLVEEVNEALEKYNFHKVLR  793 (938)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf             22006689999999876889999999999887607787300231120301139999999999999999862632467888


Q ss_pred             HHHHHHH-HHHHHHHHHCCCCCCCC---------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC-----------CC
Q ss_conf             9999999-99999986211000221---------799999999999999722343899999998289-----------98
Q gi|254780802|r  732 NIHELVN-VISKPLMEIAKKKSNAD---------RISTIRYILEKLIIMMSPMIPHLAEECWQLLGN-----------AG  790 (869)
Q Consensus       732 ~i~~f~n-~ls~~y~~~~k~~~~~~---------~~~~l~~vl~~l~~lLaPi~PhiaEEiw~~Lg~-----------~~  790 (869)
                      .|++|+. +||+||++++|+|.+++         .++||+++|.+++++||||+||+||++|+.|..           +.
T Consensus       794 ~l~~F~~~~LS~wY~~~~rdr~y~~~~~~~~rr~~q~tL~~~l~~l~~~lAP~~Ph~ae~~y~~l~~~~~~~l~~~~~~~  873 (938)
T TIGR00392       794 ALQDFIVEELSNWYIRIIRDRLYIEAKDNDKRRAAQTTLYYALLTLVKLLAPILPHTAEEIYQNLKGEKPELLKYEEDEE  873 (938)
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCC
T ss_conf             89876312000456666543422578981789999999999999999987011579999998642401022300267877


Q ss_pred             CEEECCCCCCCHHH
Q ss_conf             35517886659678
Q gi|254780802|r  791 LVAQQKWPKLDPIL  804 (869)
Q Consensus       791 ~i~~~~WP~~d~~~  804 (869)
                      |||..+||++|++.
T Consensus       874 sv~~~~~~~~~~e~  887 (938)
T TIGR00392       874 SVHLNDWPEVDEEF  887 (938)
T ss_pred             CCCCCCCCCCCHHH
T ss_conf             50236676631455


No 8  
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=100.00  E-value=0  Score=1252.01  Aligned_cols=636  Identities=27%  Similarity=0.469  Sum_probs=510.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             87656899989999999985980367678888389980778978987400477977899999977718985567688140
Q gi|254780802|r    3 TRSYSPQETDSIWQSAWYDSNIFKAENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDA   82 (869)
Q Consensus         3 ~~~y~~~~iE~kwq~~W~~~~~fe~~~~~~~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~   82 (869)
                      .|+|||++||++||++|+++++|++++++++++|+|++||||+||.|||||++|+|++|+++||+||+||+|+|+|||||
T Consensus         4 ~~~Y~~~~iE~k~~~~W~~~~~f~~~~~~~~~~f~~~~pPP~~~G~lHiGHa~~~~i~D~i~Ry~rm~G~~V~~~pG~D~   83 (877)
T PRK05729          4 PKTYDPKEVEAKWYQKWEEKGYFKPDGDKSKKPFSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDH   83 (877)
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             57899399999999999857997378778999779972889887986121667488999999998727996688898688


Q ss_pred             CCHHHHHHHHHH----CC------------CHHHHHHHHHHHHHHHHHHCCCEEECCCCEECCCHHHHHHHHHHHHHHHH
Q ss_conf             205899999980----99------------99999999999999999981917664698214773599999999999998
Q gi|254780802|r   83 FGMPAENAAREH----NV------------HPKMWTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMK  146 (869)
Q Consensus        83 ~GlPie~~~~e~----~~------------~~~~~~~~~i~~~k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~  146 (869)
                      ||||+|..+++.    +.            .|++|++++.+.+++||+|||+|+||+|+|.||||.|+++|+|+|.+|++
T Consensus        84 ~Gl~~e~~vek~l~~~g~~~~~~~re~f~~~~~~w~~~~~~~i~~q~~rlG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~  163 (877)
T PRK05729         84 AGIATQMVVERQLAAEGKTRHDLGREKFLEKVWEWKEESGGTITNQLRRLGASVDWSRERFTMDEGLSKAVREVFVRLYE  163 (877)
T ss_pred             CCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             86056899999998749983544899999999999999999999999982860335898455898899999999999998


Q ss_pred             CCCEEECCEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             89634122133214776767789898438533456432233475233430344454432100225543222221000145
Q gi|254780802|r  147 HNVIVRKTAQVNWDPVEQTVLANEQVINGRGWRSDAPVEQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIG  226 (869)
Q Consensus       147 kGliyrg~~pV~wcp~~~t~la~~Ev~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~i~  226 (869)
                      +||||||.+||+|||+|+|||||+||++.+.          +-+.+|                                 
T Consensus       164 kGliyr~~~~V~wcp~~~Tals~~EV~~~~~----------~~~~~~---------------------------------  200 (877)
T PRK05729        164 KGLIYRGKRLVNWDPKLQTALSDLEVEYKEV----------KGKLWH---------------------------------  200 (877)
T ss_pred             CCCEEECCEECCCCCCCCCHHHHHHHHCCCC----------CCCEEE---------------------------------
T ss_conf             8997841312366887788435678732456----------673389---------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             57675453555677777751365320013444323200330244320345413145899988653111124555430255
Q gi|254780802|r  227 RSEGMEIRWEIVSNTIDQIEEILVYTTRPETIFGASFIAIAVDHSISEKLSCDNTDIKEFCDEEKQKGTSLSVLDKTEKK  306 (869)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~l~~~TtrPeTl~g~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (869)
                            ++|++.+    ...+++|||||||||||+++++|+|+.+..                                 
T Consensus       201 ------ikf~l~~----~~~~l~i~TTrPeTl~~~~avav~P~dery---------------------------------  237 (877)
T PRK05729        201 ------IRYPLAD----GSDYLVVATTRPETMLGDTAVAVNPEDERY---------------------------------  237 (877)
T ss_pred             ------EECCCCC----CCCEEEEECCCCCCCCCCEEEEECCCCHHH---------------------------------
T ss_conf             ------8413247----887476501685234464578846887488---------------------------------


Q ss_pred             CCCCCCEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCH-------
Q ss_conf             3237861037777741577631123454533322211134672110122103544321016776555422211-------
Q gi|254780802|r  307 GIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIFGCPFADQRDMDFAKKYGLPIIPIMKRSINHSQDIEEG-------  379 (869)
Q Consensus       307 ~~~~G~~~~~P~~~~~~ipv~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~k~glpi~~v~~~~~~~~~~~~~~-------  379 (869)
                      ..|+|+.+.||++++ .+||++++||++++|||+||+|||||++||+++++|+||++++++..|..+....+-       
T Consensus       238 ~~l~Gk~~~~P~~~~-~ipii~d~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~id~~G~~~~~~~~~~G~~~~~  316 (877)
T PRK05729        238 KHLIGKKVILPLVGR-EIPIIADEYVDPEFGTGAVKITPAHDFNDFEVGKRHNLPMINIMDEDGTINENAGEYQGLDRFE  316 (877)
T ss_pred             HHHCCCEEEECCCCC-EEEEEECCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHCCCCCHHH
T ss_conf             985598898058897-5328715752677784617971689978999887648874346566764045741029970889


Q ss_pred             ------HHCCCCCC------CCCCHHHCC---------------CCHHHHHHHHHHHHHHHCCCCCCHHHHHHH--H--H
Q ss_conf             ------21012334------458300013---------------564665488899997404677520222111--0--0
Q gi|254780802|r  380 ------KAFSGDGI------MINSSFLDG---------------MTNTEALQAVMSHLEKQNIKNSPIGKRKIN--F--R  428 (869)
Q Consensus       380 ------~~~~~~~~------~~~~~~~~g---------------~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~--~--~  428 (869)
                            ..+...|.      +.++.++++               +..++.++.+++.++.+.+...|...+...  |  .
T Consensus       317 ar~~Ii~~L~~~g~l~~~~~~~h~~p~~~R~~~pi~~~~~~QWFi~~~~l~~~~l~~~~~~~i~~~P~~~~~~~~~wl~n  396 (877)
T PRK05729        317 ARKAIVADLEELGLLVKIEPHKHSVGHSDRSGVVIEPYLSDQWFVKMKPLAKPALEAVEDGKIKFVPKRWENTYFHWMEN  396 (877)
T ss_pred             HHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCEECCCHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHC
T ss_conf             88999999997799774321356787546778569974130100003357999999860588312577888499998605


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCC-CCCCCCCCCCCC
Q ss_conf             0111221123222223422333468463474200011100100022454210024564211013676-443564323456
Q gi|254780802|r  429 LRDWCISRQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTWKKIFCVKCGS-EALRETDTMDTF  507 (869)
Q Consensus       429 l~DW~ISRqr~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~r~~dvld~w  507 (869)
                      ++|||||||||||+|||||||+++. +.+..++                         ...|++|+. .+.|++||||+|
T Consensus       397 ~~DWcISRqr~WG~piPvw~~~~~~-~~v~~~~-------------------------~~~~~~~~~~~~~~d~DVlDtW  450 (877)
T PRK05729        397 IQDWCISRQLWWGHRIPAWYDEDGE-VYVGRTE-------------------------PEARAKAGSENLTQDEDVLDTW  450 (877)
T ss_pred             CCCCCCCCCCCCCCCEEEEECCCCC-EEECCCH-------------------------HHHHHHCCCCCCEECCCCCCCH
T ss_conf             6555113554468842589918984-8941675-------------------------6644323876525565322334


Q ss_pred             CCCC-CCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             6643-332233555654410135664114334401455544332023455532013478732232002222355323224
Q gi|254780802|r  508 VDSS-WYYMRYMTPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIGYIEIDEPFKRLFTQGMVVHET  586 (869)
Q Consensus       508 ~dS~-~~~~~~~~~~~~~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~g~~~~~~pf~~l~~~G~v~~~~  586 (869)
                      |||+ |+++....|     .+.+.+++|||+|++++|.|  ++++|++|+++..+...|    +.||+++++||+|+|+ 
T Consensus       451 FsSgl~p~s~lg~p-----~~~~~~~~~~P~d~~~~G~D--ii~fWv~rm~~~~~~~~~----~~Pfk~v~~hG~v~D~-  518 (877)
T PRK05729        451 FSSALWPFSTLGWP-----DKTPDLKRFYPTSVLVTGFD--IIFFWVARMIMMGLHFTG----QVPFKDVYIHGLVRDE-  518 (877)
T ss_pred             HHCCCCCCCCCCCC-----CCHHHHCCCCCCCCCCCCCC--HHEEEEEEEECCEEEECC----CCCCHHCCCCCEEECC-
T ss_conf             43166664416686-----52054424788754520655--211344444310320112----3761102004437889-


Q ss_pred             CCCCCCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf             33235870013062022102567775441104897064047421000000122221001234633566655301332111
Q gi|254780802|r  587 YYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRD  666 (869)
Q Consensus       587 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~~~~~~~~~~d  666 (869)
                                                              +|+|||||+||||+|.++|++||||+||||+++.+++++|
T Consensus       519 ----------------------------------------~G~KMSKS~GNvidP~~vi~~yGaDalR~~l~~~~~~g~d  558 (877)
T PRK05729        519 ----------------------------------------QGRKMSKSKGNVIDPLDLIDKYGADALRFTLAALASPGRD  558 (877)
T ss_pred             ----------------------------------------CCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCC
T ss_conf             ----------------------------------------8877878788989989999871919999999970776766


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHC---CC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf             113432101145567788999997630---24-------66789756999999999999999998816889999999999
Q gi|254780802|r  667 IIWSNKGVDSTYQFIQQIWRLIYNAKD---EL-------QTSSTKKDISLISKSTKFLERIEENYQNLSFNKAVANIHEL  736 (869)
Q Consensus       667 ~~~s~~~i~~~~rfl~kl~~l~~~~~~---~~-------~~~~~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai~~i~~f  736 (869)
                      ++|+++.++++++|++++||...+...   ..       .......|+||+++++++++.++++|++|+|++|++.+++|
T Consensus       559 i~~~~~~v~~~r~f~nKlwN~~rf~~~~~~~~~~~~~~~~~~~~~~D~WIlskL~~~i~~v~~~~~~y~f~~a~~~ly~F  638 (877)
T PRK05729        559 IRFDEERVEGYRNFANKLWNASRFVLMNLEGQDPGFLPDEAELSLADRWILSRLNRTVAEVTEALDKYRFDEAAQALYEF  638 (877)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             00068999999999999999999999724656644456621067879999999999999998750002099999999998


Q ss_pred             H-HHHHHHHHHHCCCCCCCC-------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC-CCCEEECCCCCCCHH
Q ss_conf             9-999999986211000221-------799999999999999722343899999998289-983551788665967
Q gi|254780802|r  737 V-NVISKPLMEIAKKKSNAD-------RISTIRYILEKLIIMMSPMIPHLAEECWQLLGN-AGLVAQQKWPKLDPI  803 (869)
Q Consensus       737 ~-n~ls~~y~~~~k~~~~~~-------~~~~l~~vl~~l~~lLaPi~PhiaEEiw~~Lg~-~~~i~~~~WP~~d~~  803 (869)
                      + ++||+||+++.|++.+.+       ...+|+++|+.+++||||||||+|||||+.|++ .+||+.++||++++.
T Consensus       639 ~w~d~cdwYlE~~K~rl~~~~~~~~~~~~~~L~~vL~~~L~lLhPfmPFitEElwq~L~~~~~si~~~~wP~~~~~  714 (877)
T PRK05729        639 IWNEFCDWYLELAKPVLNGGDEAAKRGTRATLAYVLEEILRLLHPFMPFITEELWQKLAPEGESIMLAPWPEADEA  714 (877)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCC
T ss_conf             4675578999997997708877889999999999999999985601357599999857788974686379999710


No 9  
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00  E-value=0  Score=1247.03  Aligned_cols=679  Identities=24%  Similarity=0.365  Sum_probs=521.7

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCCC--CCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             765689998999999998598036--767888838998077897898740047797789999997771898556768814
Q gi|254780802|r    4 RSYSPQETDSIWQSAWYDSNIFKA--ENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWD   81 (869)
Q Consensus         4 ~~y~~~~iE~kwq~~W~~~~~fe~--~~~~~~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d   81 (869)
                      +++|++++|++||++|+++++|+.  +.++++|+|+++||||||||.|||||++|||++|+++||+||+||+|+||||||
T Consensus        17 mr~n~~~~E~~~~~~W~~~~~y~~~~~~~~~~~~f~l~dgPPyanG~lH~GHaln~tlkDii~Rykrm~G~~v~~~pGwD   96 (910)
T PRK05743         17 MRGNLPKREPEILKRWEENDLYQKIREANKGKPKFILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWD   96 (910)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             88895777499999998779076678616998977982799998986424477878999999999875899679999658


Q ss_pred             CCCHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHHHHCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCC
Q ss_conf             02058999999809-------------99999999999999999998191766469821477359999999999999889
Q gi|254780802|r   82 AFGMPAENAAREHN-------------VHPKMWTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHN  148 (869)
Q Consensus        82 ~~GlPie~~~~e~~-------------~~~~~~~~~~i~~~k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kG  148 (869)
                      |||||||.+++++.             ..|++|+.++++.|++||+|||+|+||+|+|.||||.|+++++|+|.+|+++|
T Consensus        97 ~hGLPiE~~v~k~~g~~~~~~~~~~f~~~cr~~a~~~i~~~~~q~~rlG~~~DW~~~y~T~d~~y~~~~~~~F~~l~ekG  176 (910)
T PRK05743         97 CHGLPIELKVEKKLGKKRKKLSAAEFRKKCREYALEQVDIQREDFKRLGVLGDWDNPYLTMDFEYEANIIRVLGKMAKKG  176 (910)
T ss_pred             CCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCEECCCHHHHHHHHHHHHHHHHCC
T ss_conf             68699999999961998131999999999999999999999999997190264589726689889999999999999869


Q ss_pred             CEEECCEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             63412213321477676778989843853345643223347523343034445443210022554322222100014557
Q gi|254780802|r  149 VIVRKTAQVNWDPVEQTVLANEQVINGRGWRSDAPVEQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRS  228 (869)
Q Consensus       149 liyrg~~pV~wcp~~~t~la~~Ev~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~i~~~  228 (869)
                      |||||.+||+|||+|+|||||+||++.+          +..+++|.++                                
T Consensus       177 liYr~~kpV~Wcp~~~TaLA~~EVey~d----------~~s~si~v~f--------------------------------  214 (910)
T PRK05743        177 YLYKGLKPVYWSPDCGSALAEAEVEYHD----------KTSPSIYVAF--------------------------------  214 (910)
T ss_pred             CEEECCCCCEECCCCCCCCCCHHEECCC----------EECCEEEEEE--------------------------------
T ss_conf             9685782320489999440010100577----------5432599998--------------------------------


Q ss_pred             CCCCCCCCCCCCC----CCCCCEEEEEEECCCCCCCCCEEEEECCCCCCHHHHHCCHHH-HHHHHHHHHH-HHHHHHHHH
Q ss_conf             6754535556777----777513653200134443232003302443203454131458-9998865311-112455543
Q gi|254780802|r  229 EGMEIRWEIVSNT----IDQIEEILVYTTRPETIFGASFIAIAVDHSISEKLSCDNTDI-KEFCDEEKQK-GTSLSVLDK  302 (869)
Q Consensus       229 ~~~~~~~~~~~~~----~~~~~~l~~~TtrPeTl~g~~~i~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~  302 (869)
                             ++.+..    ...+.+++|||||||||+|+++++++|+.+|+..-......+ .+.++..... +.....+..
T Consensus       215 -------~l~~~~~~~~~~~~~~~~iwTTtPwTl~~n~avav~p~~~Y~~~~~~~~~iva~~l~~~~~~~~~~~~~~~~~  287 (910)
T PRK05743        215 -------PVVDGKAGLDGLKDASLVIWTTTPWTLPANQAIAVHPELDYALVEVGEKLILAKDLVESVLKRLGWEDYEVLA  287 (910)
T ss_pred             -------EECCCCCCCCCCCCCEEEEEECCHHHHHCCCEEEECCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCEEEEE
T ss_conf             -------9437633334567743999708840342064688778750564036745541998999999984774306653


Q ss_pred             HCCCCCCCCCEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCH---
Q ss_conf             02553237861037777741577631123454533322211134672110122103544321016776555422211---
Q gi|254780802|r  303 TEKKGIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIFGCPFADQRDMDFAKKYGLPIIPIMKRSINHSQDIEEG---  379 (869)
Q Consensus       303 ~~~~~~~~G~~~~~P~~~~~~ipv~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~k~glpi~~v~~~~~~~~~~~~~~---  379 (869)
                      ..++..|+|+.++||+++ +.+||++++||++++|||+||+|||||++||+++++||||++.+++..|.++....+-   
T Consensus       288 ~~~G~~L~g~~~~~P~~~-~~~pii~~d~V~~~~GTG~Vh~aPaHg~~D~~~~~~~~L~~~~~vd~~G~~~~~~~~~~G~  366 (910)
T PRK05743        288 TFKGAELEGLVAQHPFYD-RDSPVILGDHVTLDAGTGLVHTAPGHGEDDYVVGQKYGLEVLNPVDDDGVYTEEAPLFAGL  366 (910)
T ss_pred             EEECCEECCCEEECCCCC-CEEEEEECCCCCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             220535037689767789-6522784473267777611885787984367788764998654458776343677445883


Q ss_pred             ----------------HHCCCCCCCCCCHHHCCCCH-----------------HHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf             ----------------21012334458300013564-----------------665488899997404677520222111
Q gi|254780802|r  380 ----------------KAFSGDGIMINSSFLDGMTN-----------------TEALQAVMSHLEKQNIKNSPIGKRKIN  426 (869)
Q Consensus       380 ----------------~~~~~~~~~~~~~~~~g~~~-----------------~~~~~~i~~~l~~~~~~~~~~~~~~~~  426 (869)
                                      +.+...+.+.|+.+++|++.                 ...++.+++.+.+..+.+. .|+.+..
T Consensus       367 ~v~~a~~~Ii~~L~~~g~L~~~~~~~Hsyp~cwR~~~Pvi~rat~QWFi~~d~~~~r~~~l~~i~~v~~~P~-~~~~r~~  445 (910)
T PRK05743        367 FVFKANPKIIELLEEKGALLKLEKITHSYPHCWRTKKPIIFRATPQWFISMDKKTLREQALKAIEKVKWIPS-WGKNRIE  445 (910)
T ss_pred             CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCEEEECCHHHHHCCCHHHHHHHHHHHHHCCEECH-HHHHHHH
T ss_conf             499889999999987798543421013675332668862676310034234718899999999984674151-6787999


Q ss_pred             HHC---CCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC------CHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf             000---111221123222223422333468463474200------01110010002245421002456421101367644
Q gi|254780802|r  427 FRL---RDWCISRQRSWGCPIPVIHCQKCGIVELPKEDL------PVQLPEDLDFTLPGNPLENHPTWKKIFCVKCGSEA  497 (869)
Q Consensus       427 ~~l---~DW~ISRqr~WG~piPv~~~~~~~~~~~~~~~l------~v~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~  497 (869)
                      .++   +||||||||+||+|||||||++|+.+.+..+.+      ..+...|.||.....      +.  .....++..+
T Consensus       446 ~~i~~r~DWcISRQR~WG~PIPv~~~~~~~~~~~~~~~~~~i~~~~~~~G~d~w~~~~~~------~~--l~~~~~~~~~  517 (910)
T PRK05743        446 SMVENRPDWCISRQRTWGVPIPIFYHKETGELHRTPELIEHVAKLFEKEGIDAWFELDAK------EL--LPEGYPADQY  517 (910)
T ss_pred             HHHHCCCCCEEECCCCCCCCEEEEEECCCCEECCCHHHHHHHHHHHHHCCCCCCCCCCHH------HH--CCCCCCCHHE
T ss_conf             997079886252135668822599978997004768889999998875076411239998------83--7898983100


Q ss_pred             CCCCCCCCCCCCCC--CCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCC-CCCCCCCC
Q ss_conf             35643234566643--3322335556544101356641143344014555443320234555320134787-32232002
Q gi|254780802|r  498 LRETDTMDTFVDSS--WYYMRYMTPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIGY-IEIDEPFK  574 (869)
Q Consensus       498 ~r~~dvld~w~dS~--~~~~~~~~~~~~~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~g~-~~~~~pf~  574 (869)
                      .|++||||+|||||  |++..           .+....++|+|+|+||.||.       |+|++.++..+. +....||+
T Consensus       518 ~r~~DvlD~WFdSGss~~~~~-----------~~~~~~~~PaDly~eG~Dq~-------RgWF~s~ll~s~~~~~~~Pfk  579 (910)
T PRK05743        518 EKETDILDVWFDSGSTHAAVL-----------EDRERLGYPADLYLEGSDQH-------RGWFQSSLLTSVATNGKAPYK  579 (910)
T ss_pred             EECCCCCCCEECCCCCCHHHC-----------CCCCCCCCCCCEEECCCCHH-------HEEHHHHHHHEEEECCCCCEE
T ss_conf             644755321002798631111-----------46621168432323376522-------102366221224521788841


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCCCCCCHHHHH
Q ss_conf             22235532322433235870013062022102567775441104897064047421000000122221001234633566
Q gi|254780802|r  575 RLFTQGMVVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTAR  654 (869)
Q Consensus       575 ~l~~~G~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~~yGaD~lR  654 (869)
                      ++++||+|+|+                                         +|+|||||+||||+|.++|++||||+||
T Consensus       580 ~v~~hG~vlD~-----------------------------------------~G~KMSKS~GNvidP~~ii~~yGAD~lR  618 (910)
T PRK05743        580 QVLTHGFTVDG-----------------------------------------KGRKMSKSLGNVIDPQDVIKKYGADILR  618 (910)
T ss_pred             EEEECCEEECC-----------------------------------------CCCCCCCCCCCCCCHHHHHHHCCCHHHH
T ss_conf             79861328989-----------------------------------------8888888787779989998654940999


Q ss_pred             HHHHHCCCCCCCCCCCCCCHH---HHHHHHHHHHHHHHHHHCCCCCC--------CCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             655301332111113432101---14556778899999763024667--------8975699999999999999999881
Q gi|254780802|r  655 LFVLSDSPPDRDIIWSNKGVD---STYQFIQQIWRLIYNAKDELQTS--------STKKDISLISKSTKFLERIEENYQN  723 (869)
Q Consensus       655 l~~~~~~~~~~d~~~s~~~i~---~~~rfl~kl~~l~~~~~~~~~~~--------~~~~D~~ils~~~~~i~~v~~~~e~  723 (869)
                      ||+++ ++...|+.+|++.+.   ..+|.|.+++++++.+.+.+.+.        ...+|+|||++++.++++|+++|++
T Consensus       619 lwvas-~d~~~d~~~s~~il~~~~~~yrKi~Nt~rf~l~nl~~f~~~~~~~~~~~l~~lD~wiL~~l~~~~~~v~~~~~~  697 (910)
T PRK05743        619 LWVAS-TDYSGDVRISDEILKQVAESYRRIRNTLRFLLGNLNDFDPAKDAVPYEELVELDRWALHRLNELQEEIIEAYEN  697 (910)
T ss_pred             HHHHH-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99872-57434545568999889999999999999998632168832245892446576899999999999999999863


Q ss_pred             CCHHHHHHHHHHHH-HHHHHHHHHHCCCCCCCC---------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC-CCCCE
Q ss_conf             68899999999999-999999986211000221---------79999999999999972234389999999828-99835
Q gi|254780802|r  724 LSFNKAVANIHELV-NVISKPLMEIAKKKSNAD---------RISTIRYILEKLIIMMSPMIPHLAEECWQLLG-NAGLV  792 (869)
Q Consensus       724 ~~f~~ai~~i~~f~-n~ls~~y~~~~k~~~~~~---------~~~~l~~vl~~l~~lLaPi~PhiaEEiw~~Lg-~~~~i  792 (869)
                      |+|++|++.+++|+ ++||+||+++.|+|.+++         .+.+|+++|+.+++|||||+||+|||+|+.|+ ..+||
T Consensus       698 y~f~~a~~~l~~F~~~dls~~Y~~~~Kdrly~~~~~~~~R~s~q~~L~~vl~~l~~llaPi~Pf~~EEiw~~l~~~~~SV  777 (910)
T PRK05743        698 YDFHKVYQALHNFCSVDLSSFYLDIIKDRLYTDKADSLARRSAQTALYHILEALVRWLAPILSFTAEEIWQYLPEREESV  777 (910)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCE
T ss_conf             55889999999885756879998761244414789849999999999999999999998664699999997388999976


Q ss_pred             EECCCCCCC
Q ss_conf             517886659
Q gi|254780802|r  793 AQQKWPKLD  801 (869)
Q Consensus       793 ~~~~WP~~d  801 (869)
                      |+++||+..
T Consensus       778 ~l~~wp~~~  786 (910)
T PRK05743        778 FLEEWPEGP  786 (910)
T ss_pred             ECCCCCCCC
T ss_conf             826799996


No 10 
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=100.00  E-value=0  Score=1233.33  Aligned_cols=640  Identities=28%  Similarity=0.484  Sum_probs=516.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCC-CCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             8765689998999999998598036-767888838998077897898740047797789999997771898556768814
Q gi|254780802|r    3 TRSYSPQETDSIWQSAWYDSNIFKA-ENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWD   81 (869)
Q Consensus         3 ~~~y~~~~iE~kwq~~W~~~~~fe~-~~~~~~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d   81 (869)
                      .+.|||++||+|||++|+++++|++ .+++++|+|+|++|||||||.||+||++|+|++|+++||+||+||||+||||||
T Consensus         6 ~~~y~~~~iE~k~~~~W~~~~~f~~~~~~~~~~~f~i~~ppPy~nG~lHiGH~~~~t~~D~~~Ry~rm~G~~Vl~~~G~D   85 (809)
T PRK13208          6 PKKYDPKEIEEKWQKIWEEEGIYKFDDEDEKKPVYIIDTPPPTVSGKLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWD   85 (809)
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             57899499999999999867993678666899969990699998897213166889999999999981799669988458


Q ss_pred             CCCHHHHHHHHHH-CC------------CHHHHHHHHHHHHHHHHHHCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCC
Q ss_conf             0205899999980-99------------9999999999999999998191766469821477359999999999999889
Q gi|254780802|r   82 AFGMPAENAAREH-NV------------HPKMWTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHN  148 (869)
Q Consensus        82 ~~GlPie~~~~e~-~~------------~~~~~~~~~i~~~k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kG  148 (869)
                      |||||||.++++. ++            .|++|++++++.|++||+|||+|+||+|+|.|+||.|++++||+|.+|+++|
T Consensus        86 ~~GlPie~~vek~~~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~y~~~v~~~f~~L~~~G  165 (809)
T PRK13208         86 DNGLPTERKVEKYYGIRAHDISREEFIELCRELTDEDEEKFRELWRRLGLSVDWSLEYRTISPEYRRISQKSFLDLYKKG  165 (809)
T ss_pred             CCCHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             56689999999971999012799999999999999999999999998286140689707588789999999999999779


Q ss_pred             CEEECCEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             63412213321477676778989843853345643223347523343034445443210022554322222100014557
Q gi|254780802|r  149 VIVRKTAQVNWDPVEQTVLANEQVINGRGWRSDAPVEQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRS  228 (869)
Q Consensus       149 liyrg~~pV~wcp~~~t~la~~Ev~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~i~~~  228 (869)
                      |||||.+||+|||+|+|+||||||++++..          .+.                                     
T Consensus       166 liy~g~~~v~wcp~~~T~ls~~Ev~~~~~~----------~~~-------------------------------------  198 (809)
T PRK13208        166 LIYRAEAPVLWCPRCRTAIAQAEVEYKERE----------GKL-------------------------------------  198 (809)
T ss_pred             CEEEECCCCCCCCCCCCCHHHHHHHCCCCC----------CEE-------------------------------------
T ss_conf             978742103677665755565676425677----------603-------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             67545355567777775136532001344432320033024432034541314589998865311112455543025532
Q gi|254780802|r  229 EGMEIRWEIVSNTIDQIEEILVYTTRPETIFGASFIAIAVDHSISEKLSCDNTDIKEFCDEEKQKGTSLSVLDKTEKKGI  308 (869)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~l~~~TtrPeTl~g~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (869)
                        ..++|++.+    .+.++++||||||||+|+++++++|+.+..                                 ..
T Consensus       199 --~~ikf~~~~----~~~~l~iaTTrPeTl~~~~av~v~P~d~ry---------------------------------~~  239 (809)
T PRK13208        199 --NYIKFPVKE----GGEKITIATTRPELLPACVAVVVHPDDERY---------------------------------KH  239 (809)
T ss_pred             --EEEEEEECC----CCCEEEEEECCHHHHHHHHCEEECCCCHHH---------------------------------HH
T ss_conf             --999888517----986489995782376530204106885788---------------------------------98


Q ss_pred             CCCCEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCC
Q ss_conf             37861037777741577631123454533322211134672110122103544321016776555422211210123344
Q gi|254780802|r  309 YTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIFGCPFADQRDMDFAKKYGLPIIPIMKRSINHSQDIEEGKAFSGDGIM  388 (869)
Q Consensus       309 ~~G~~~~~P~~~~~~ipv~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~k~glpi~~v~~~~~~~~~~~~~~~~~~~~~~~  388 (869)
                      |+|+.+++|++++ .+||++++||++++|||+||++|+||++||++++++|||++.+++..|.....             
T Consensus       240 l~G~~~~~P~~~~-~vpi~~~~~V~~~~GTG~V~~~p~~d~~D~~~~~~~~l~~~~~id~~G~~~~~-------------  305 (809)
T PRK13208        240 LVGKTAIVPLFGV-EVPILADPLVDPDFGTGAVMICTFGDQTDVTWWRELNLPLRIIIDEDGRITEA-------------  305 (809)
T ss_pred             HCCCEEECCCCCC-EEEEEEEEEEECCCCCCCEEECCCCCCHHHEEHHHCCCCCEEEECCCCCCCCC-------------
T ss_conf             4598897168896-66786346650467878356678987303302443055630003778724246-------------


Q ss_pred             CCCHHHCCCCHHHHHHHHHHHHHHHCCC-----------C------------------------------------CCH-
Q ss_conf             5830001356466548889999740467-----------7------------------------------------520-
Q gi|254780802|r  389 INSSFLDGMTNTEALQAVMSHLEKQNIK-----------N------------------------------------SPI-  420 (869)
Q Consensus       389 ~~~~~~~g~~~~~~~~~i~~~l~~~~~~-----------~------------------------------------~~~-  420 (869)
                        .+.+.|+.+.+|++++++.|++.+..           .                                    .|. 
T Consensus       306 --~~~~~G~~v~ea~~~ii~~L~~~g~l~~~~~~~h~~p~c~R~~~pi~~~~~~QWfi~~~~~k~~~~~~~~~i~~~P~~  383 (809)
T PRK13208        306 --AGKYAGLTIKEARKKIIEDLKEEGLLVKQEPITHNVKVCERCKTPIEILVTRQWFIKVLDLKEELLERAKEIEWYPEH  383 (809)
T ss_pred             --CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCEEEECHHHHHHHHHHHHHHHHHHHCCEECCCH
T ss_conf             --634599689998999999999689941344554556411478972168752456653277788888764226005840


Q ss_pred             HHHHHHH---HCC-CCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf             2221110---001-112211232222234223334684634742000111001000224542100245642110136764
Q gi|254780802|r  421 GKRKINF---RLR-DWCISRQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTWKKIFCVKCGSE  496 (869)
Q Consensus       421 ~~~~~~~---~l~-DW~ISRqr~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~  496 (869)
                      .+++...   .++ ||||||||+||+|||||+|++|+......      .+...+  .+.++..+.+......|..++..
T Consensus       384 ~~~r~~~wl~~~~~DW~iSRqr~WGtpiPiw~~~~~~~~~~~~------~~~~~~--l~~d~~~~~~~~~~~~~~~~~~~  455 (809)
T PRK13208        384 MRKRLENWIEGLNWDWCISRQRYFGTPIPVWYCKDCGGEGKPI------LADEED--LPVDPTKDPPPGYSECCRCGPGE  455 (809)
T ss_pred             HHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEECCCCCCCCCC------CCCHHH--CCCCCHHCCCCHHHCCCCCCCCC
T ss_conf             8889999984256542000012358644247605778756401------487887--37781101741110246668766


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             43564323456664333223355565441013566411433440145554433202345553201347873223200222
Q gi|254780802|r  497 ALRETDTMDTFVDSSWYYMRYMTPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIGYIEIDEPFKRL  576 (869)
Q Consensus       497 ~~r~~dvld~w~dS~~~~~~~~~~~~~~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~g~~~~~~pf~~l  576 (869)
                      +.|++||||+|||||+.+.....+    +.+++.+++|||+|++++|.||+..|+++.-+.+.      .+....||+++
T Consensus       456 ~~~e~dvlD~WfdS~~~p~~~~~~----~~~~~~f~~~~P~d~~~~G~Di~r~W~~~~l~~~~------~l~~~~Pfk~v  525 (809)
T PRK13208        456 FEPETDVMDTWADSSITPLIVTGW----LEDKELFEKLFPADLRPQGHDIIRTWLFYTILRAY------LLTGKLPWKNI  525 (809)
T ss_pred             CEECCCCCCCEEECCCCHHHHCCC----CCCHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHH------HHCCCCCCHHC
T ss_conf             330476666465567788876056----32156675448852443405988739999999999------85388860201


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             23553232243323587001306202210256777544110489706404742100000012222100123463356665
Q gi|254780802|r  577 FTQGMVVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLF  656 (869)
Q Consensus       577 ~~~G~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~  656 (869)
                      ++||+|+++                                         +|+|||||+||||+|.++|++||||++|||
T Consensus       526 ~~~G~vld~-----------------------------------------~G~KMSKS~GNvi~p~eii~~yGADalR~~  564 (809)
T PRK13208        526 MISGMVLDP-----------------------------------------DGKKMSKSKGNVVDPEELLEKYGADAVRYW  564 (809)
T ss_pred             CCCCEEECC-----------------------------------------CCCCCCCCCCCCCCHHHHHHHCCCHHHHHH
T ss_conf             114605546-----------------------------------------774347778896897898653380999999


Q ss_pred             HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC--------CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf             5301332111113432101145567788999997630246--------67897569999999999999999988168899
Q gi|254780802|r  657 VLSDSPPDRDIIWSNKGVDSTYQFIQQIWRLIYNAKDELQ--------TSSTKKDISLISKSTKFLERIEENYQNLSFNK  728 (869)
Q Consensus       657 ~~~~~~~~~d~~~s~~~i~~~~rfl~kl~~l~~~~~~~~~--------~~~~~~D~~ils~~~~~i~~v~~~~e~~~f~~  728 (869)
                      ++ .+++++|++|+++++++.++|++++||..........        ......|+||++++++++++++++|++|+|++
T Consensus       565 la-~~~~~~d~~~~~~~~~~~~~~~~klwN~~rf~~~~~~~~~~~~~~~~~~~lDrwils~l~~~i~~v~~~~e~y~f~~  643 (809)
T PRK13208        565 AA-NSRLGSDTRFSEKQIKIGKRLLTKLWNASRFVSSFIEPEKIEEKAPILEPVDRWILAKLNRVVKKATEALENYDFAE  643 (809)
T ss_pred             HH-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf             96-18944465668999999999999999999999970354566676322578899999999999999999997358999


Q ss_pred             HHHHHHHHH-HHHHHHHHHHCCCCCCCC--------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEECCCCC
Q ss_conf             999999999-999999986211000221--------79999999999999972234389999999828998355178866
Q gi|254780802|r  729 AVANIHELV-NVISKPLMEIAKKKSNAD--------RISTIRYILEKLIIMMSPMIPHLAEECWQLLGNAGLVAQQKWPK  799 (869)
Q Consensus       729 ai~~i~~f~-n~ls~~y~~~~k~~~~~~--------~~~~l~~vl~~l~~lLaPi~PhiaEEiw~~Lg~~~~i~~~~WP~  799 (869)
                      |++.+++|+ ++||+||+++.|+|.+..        ...||+++|+.+++|||||+||+|||||+.|++++|||+++||+
T Consensus       644 a~~~i~~F~~~~l~~~Yie~~k~R~~~~~~~~~~~~a~~tL~~vL~~~l~llaP~~PfiaEeiw~~L~~~~sV~~~~wP~  723 (809)
T PRK13208        644 ALEEIESFFWHDFCDNYLELVKSRAYGEDGSEEQKSAIYTLYTVLRTLLKLLAPFMPFITEEIYSWLYGGSSVHRASWPE  723 (809)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCC
T ss_conf             99999999999878999999889871488818899999999999999999998788999999998689998188579999


Q ss_pred             CCHHH
Q ss_conf             59678
Q gi|254780802|r  800 LDPIL  804 (869)
Q Consensus       800 ~d~~~  804 (869)
                      +++..
T Consensus       724 ~~~~~  728 (809)
T PRK13208        724 VDELL  728 (809)
T ss_pred             CCCCC
T ss_conf             98200


No 11 
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00  E-value=0  Score=1233.47  Aligned_cols=693  Identities=25%  Similarity=0.414  Sum_probs=548.5

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCCC---CCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             765689998999999998598036---76788883899807789789874004779778999999777189855676881
Q gi|254780802|r    4 RSYSPQETDSIWQSAWYDSNIFKA---ENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGW   80 (869)
Q Consensus         4 ~~y~~~~iE~kwq~~W~~~~~fe~---~~~~~~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~   80 (869)
                      +++|+.++|++||++|+++++|+.   +.+.++++|+++||||||||.+|+|||+|+|+||+|.||++|+||+|.|+|||
T Consensus        16 mr~~l~~~E~~i~~~W~e~~iy~k~~~~~~~g~~~FvfhDGPPyANG~iHiGHalnKilKDiI~Ry~~m~G~~v~~~pGW   95 (933)
T COG0060          16 MRANLPKKEPKILKFWEENDIYEKIREERNKGKPKFVLHDGPPYANGNIHIGHALNKILKDIIVRYKTMQGYDVPYVPGW   95 (933)
T ss_pred             CCCCHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             66992341889998888736999999997389980897479997789822656677666663433320458858988997


Q ss_pred             CCCCHHHHHHHHHH----------------CCCHHHHHHHHHHHHHHHHHHCCCEEECCCCEECCCHHHHHHHHHHHHHH
Q ss_conf             40205899999980----------------99999999999999999999819176646982147735999999999999
Q gi|254780802|r   81 DAFGMPAENAAREH----------------NVHPKMWTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDF  144 (869)
Q Consensus        81 d~~GlPie~~~~e~----------------~~~~~~~~~~~i~~~k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L  144 (869)
                      ||||||||.+++++                +..||++|.++++.|+++|+|||+|+||+++|.|||++|++.++|.|.+|
T Consensus        96 DcHGLPIE~~vek~lg~~k~~i~~~~~~efr~~Cr~~a~~~v~~q~~~f~RLGv~~Dw~npY~Tmd~~ye~~~~~~f~~~  175 (933)
T COG0060          96 DCHGLPIELKVEKKLGIGKKDIESFGVEEFREKCREFALEQVDEQKEQFKRLGVWGDWENPYKTMDPSYEESVWWAFKEL  175 (933)
T ss_pred             CCCCCHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCEECCCHHHHHHHHHHHHHH
T ss_conf             67882288999998287631143348999999999999999999999987636763268980327889999999999999


Q ss_pred             HHCCCEEECCEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             98896341221332147767677898984385334564322334752334303444544321002255432222210001
Q gi|254780802|r  145 MKHNVIVRKTAQVNWDPVEQTVLANEQVINGRGWRSDAPVEQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNW  224 (869)
Q Consensus       145 ~~kGliyrg~~pV~wcp~~~t~la~~Ev~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~  224 (869)
                      ++|||||||.+||+|||+|+||||+|||++++          ++.|++|                               
T Consensus       176 ~~kGllyrg~Kpv~wsp~c~TaLAeaEvey~d----------~~dpSIy-------------------------------  214 (933)
T COG0060         176 YEKGLLYRGYKPVPWSPRCETALAEAEVEYGD----------VKDPSIY-------------------------------  214 (933)
T ss_pred             HHCCCEECCCEEEEECCCCCCCHHHHHHCCCC----------CCCCEEE-------------------------------
T ss_conf             97797522770012268777600366640256----------6896289-------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCHHHHHCCH-HH-HHHHHHHHHHHHHH-HHHH
Q ss_conf             455767545355567777775136532001344432320033024432034541314-58-99988653111124-5554
Q gi|254780802|r  225 IGRSEGMEIRWEIVSNTIDQIEEILVYTTRPETIFGASFIAIAVDHSISEKLSCDNT-DI-KEFCDEEKQKGTSL-SVLD  301 (869)
Q Consensus       225 i~~~~~~~~~~~~~~~~~~~~~~l~~~TtrPeTl~g~~~i~v~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~-~~~~  301 (869)
                              ++|++.+...+.+.+++|||||||||++|.+++++|+.+|+........ .+ ...++......... ..+.
T Consensus       215 --------V~F~v~~~~~~~~~~lviWTTTPWTLPaN~aiav~pd~~Y~lv~~~~~~~IlA~~lve~~~~~~~~~~~~vl  286 (933)
T COG0060         215 --------VKFPVKDEGLDENAYLVIWTTTPWTLPANLAIAVHPDLDYVLVEVNGEKLILAKALVESVAKKAGVEDYEVL  286 (933)
T ss_pred             --------EEEEECCCCCCCCCEEEEEECCCCCCHHCCEEEECCCCCEEEEEECCEEEEEHHHHHHHHHHHCCCCCEEEE
T ss_conf             --------997733578877707999948987731004367679851699997888999829989999987098420776


Q ss_pred             HHCCCCCCCCCEECCCCCC---CEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCC-CCCCCCCCCCCCCCCCCC
Q ss_conf             3025532378610377777---415776311234545333222111346721101221035-443210167765554222
Q gi|254780802|r  302 KTEKKGIYTGIHVKHPLNP---NVVIPVYIANFVFMNYGTGAIFGCPFADQRDMDFAKKYG-LPIIPIMKRSINHSQDIE  377 (869)
Q Consensus       302 ~~~~~~~~~G~~~~~P~~~---~~~ipv~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~k~g-lpi~~v~~~~~~~~~~~~  377 (869)
                      .+.++.+|.|..|.||+..   +...||+.|+||+++.|||+||+|||||++||.+++++| ||+..++|..|.++.++.
T Consensus       287 ~~~kG~~Leg~~y~hPf~~~~~~~~~~vi~gd~VT~d~GTG~VHtAPghGeeDy~vg~~~g~l~v~~pVD~~G~yt~~~~  366 (933)
T COG0060         287 ETFKGSELEGLRYEHPFYDFVYDRAFPVILGDHVTLDDGTGLVHTAPGHGEEDYEVGKKYGLLEVLNPVDDNGRYTEEAP  366 (933)
T ss_pred             EEEEHHHHCCCEEECCCCCCCCCCEEEEEECCEEECCCCCCCEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCH
T ss_conf             77553662878764887654545604688527672279841056389898789999998299676466688855666543


Q ss_pred             C--H-----------------HHCCCCCCCCCCHHHCCCCH---------------HHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf             1--1-----------------21012334458300013564---------------665488899997404677520222
Q gi|254780802|r  378 E--G-----------------KAFSGDGIMINSSFLDGMTN---------------TEALQAVMSHLEKQNIKNSPIGKR  423 (869)
Q Consensus       378 ~--~-----------------~~~~~~~~~~~~~~~~g~~~---------------~~~~~~i~~~l~~~~~~~~~~~~~  423 (869)
                      .  |                 +.+...+.+.|+++++|++.               ++.++.+++.+.+-.+.+.+ |+.
T Consensus       367 ~~~G~~v~dAn~~Ii~~Lk~~g~Ll~~e~i~HsYPhcWR~ktPlIyRAt~QWFi~v~~~r~~~l~~i~~v~w~P~~-~~~  445 (933)
T COG0060         367 KYEGLFVKDANKKIIEDLKEKGNLLKSEKIEHSYPHCWRTKTPLIYRATPQWFVSVDKLRDKMLKEINKVNWVPDW-GKN  445 (933)
T ss_pred             HHCCCEECCCCHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCEEEEEECCHHEEEHHHHHHHHHHHHHCCEEECHH-HHH
T ss_conf             2178240007899999998679531533577579866678980698505203367888999999998555688715-789


Q ss_pred             HHHHH---CCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHH--HHHCCCCCCCC
Q ss_conf             11100---01112211232222234223334684634742000111001000224542100245642--11013676443
Q gi|254780802|r  424 KINFR---LRDWCISRQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTWKK--IFCVKCGSEAL  498 (869)
Q Consensus       424 ~~~~~---l~DW~ISRqr~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~  498 (869)
                      +...+   .+||||||||+||+|||||+|++||.+.+..+|+.....+...  ..|...+..+.-.+  ..|+.||.++.
T Consensus       446 R~~~mve~r~DW~ISRQR~WGvPiPi~~~~~~g~~~~~~~El~e~~~~~~~--~~g~~~w~~~~idel~~~~~~~g~~~~  523 (933)
T COG0060         446 RFGNMVENRPDWCISRQRYWGVPIPVWYCKETGEILVITEELEELVGQLVE--EKGIDDWHRPDIDELLPPCPEDGKEYR  523 (933)
T ss_pred             HHHHHHCCCCCCEEECCCCCCCCEEEEEECCCCCEECCHHHHHHHHHHHHH--HCCCHHHHCCCHHHHCCCCCCCCCEEE
T ss_conf             999997189864365166678853379988999742328999999987743--217266515634764578888765059


Q ss_pred             CCCCCCCCCCCCC-CCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCC-CCCCCCCC
Q ss_conf             5643234566643-332233555654410135664114334401455544332023455532013478732-23200222
Q gi|254780802|r  499 RETDTMDTFVDSS-WYYMRYMTPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIGYIE-IDEPFKRL  576 (869)
Q Consensus       499 r~~dvld~w~dS~-~~~~~~~~~~~~~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~g~~~-~~~pf~~l  576 (869)
                      |++||||+||||| .+++   ..+   |+..+.+..++ +|+|+||+||+       |+|+++++.++++. ...||+++
T Consensus       524 rv~DvlDVWFDSGs~~~a---~~~---~~~~~~~~~~~-aD~~lEGsDQ~-------RGWF~Ssl~~s~a~~~~aPYk~v  589 (933)
T COG0060         524 RVPDVLDVWFDSGSTPYA---VLH---PRENLKFPALF-ADFYLEGSDQT-------RGWFYSSLLTSTALFGRAPYKNV  589 (933)
T ss_pred             ECCCCEEEEECCCCCCCC---CCC---CCCCCCCCCCC-CCEEEEECCCC-------CHHHHHHHHHHHHHCCCCHHHHH
T ss_conf             657546888737897111---107---75444676555-75799706655-------22689999999997288507877


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             23553232243323587001306202210256777544110489706404742100000012222100123463356665
Q gi|254780802|r  577 FTQGMVVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLF  656 (869)
Q Consensus       577 ~~~G~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~  656 (869)
                      ++||+++|+                                         +|+|||||+||+|+|.+++++||||+||||
T Consensus       590 ltHGfvlDe-----------------------------------------~GrKMSKSlGN~v~P~~V~~~yGADiLRLw  628 (933)
T COG0060         590 LTHGFVLDE-----------------------------------------KGRKMSKSLGNVVDPQDVIDKYGADILRLW  628 (933)
T ss_pred             HHCCCEECC-----------------------------------------CCCCCCCCCCCCCCHHHHHHHHCCHHEEEE
T ss_conf             632617888-----------------------------------------888765557881898999876276340466


Q ss_pred             HHHCCCCCCCCCCCCCCHHHHHHHHHHHHH---HHHHHHCCCCCCC--------CHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             530133211111343210114556778899---9997630246678--------97569999999999999999988168
Q gi|254780802|r  657 VLSDSPPDRDIIWSNKGVDSTYQFIQQIWR---LIYNAKDELQTSS--------TKKDISLISKSTKFLERIEENYQNLS  725 (869)
Q Consensus       657 ~~~~~~~~~d~~~s~~~i~~~~rfl~kl~~---l~~~~~~~~~~~~--------~~~D~~ils~~~~~i~~v~~~~e~~~  725 (869)
                      +++. +.+.|+.+|+++++.+.+.++++||   ++..+.+.+++..        ..+|+||+++++.+++.++++|++|+
T Consensus       629 v~ss-d~~~dl~~s~~il~~~~~~~r~irNt~rF~l~nl~~fdp~~~~~~~~~~~~~Drwil~rl~~l~~~v~eaye~y~  707 (933)
T COG0060         629 VASS-DYWEDLRFSDEILKQVREVYRKIRNTYRFLLGNLDDFDPKKDAVLPEELRELDRWILSRLNSLVKEVREAYENYD  707 (933)
T ss_pred             EEEC-CCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             5615-823032027889999999999999999999885058994213351444232179999999999999999998467


Q ss_pred             HHHHHHHHHHHH-HHHHHHHHHHCCCCCCCC---------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC---CCE
Q ss_conf             899999999999-999999986211000221---------7999999999999997223438999999982899---835
Q gi|254780802|r  726 FNKAVANIHELV-NVISKPLMEIAKKKSNAD---------RISTIRYILEKLIIMMSPMIPHLAEECWQLLGNA---GLV  792 (869)
Q Consensus       726 f~~ai~~i~~f~-n~ls~~y~~~~k~~~~~~---------~~~~l~~vl~~l~~lLaPi~PhiaEEiw~~Lg~~---~~i  792 (869)
                      |+++++.+++|+ .+||+||++++|+|.+++         .+++|+++|.+++++||||+||+|||+|+.|.+.   +||
T Consensus       708 f~~v~~~l~~F~~~dLS~~Yld~~kdr~y~~~~~s~~rraa~~~Ly~il~~l~~~lAPilPftaEeiw~~l~~~~~~eSV  787 (933)
T COG0060         708 FHKVVRALMNFVSEDLSNWYLDIIKDRLYTEAADSPDRRAAQTTLYHILKALVRLLAPILPFTAEEIWQNLPGERKEESV  787 (933)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEE
T ss_conf             99999999999885665889888788764047999889999999999999999997101036599999747667887536


Q ss_pred             EECCCCCCCHHH
Q ss_conf             517886659678
Q gi|254780802|r  793 AQQKWPKLDPIL  804 (869)
Q Consensus       793 ~~~~WP~~d~~~  804 (869)
                      |+++||+.++.+
T Consensus       788 hl~~~p~~~~~~  799 (933)
T COG0060         788 HLEDWPEVDEEL  799 (933)
T ss_pred             EECCCCCCCCCC
T ss_conf             703576554321


No 12 
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=100.00  E-value=0  Score=1226.32  Aligned_cols=681  Identities=22%  Similarity=0.322  Sum_probs=511.1

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCCC--CCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             765689998999999998598036--767888838998077897898740047797789999997771898556768814
Q gi|254780802|r    4 RSYSPQETDSIWQSAWYDSNIFKA--ENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWD   81 (869)
Q Consensus         4 ~~y~~~~iE~kwq~~W~~~~~fe~--~~~~~~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d   81 (869)
                      +++|+.++|++||++|+++++|+.  +.++++|+|+|+||||||||.|||||++|||++|+++||+||+||+|+||||||
T Consensus        22 ~r~nl~~~E~~~~~~W~~~~~y~~~~~~~~~~~~f~~~dGPPyanG~lH~GHaln~tikDii~Rykrm~G~~V~~~~GwD  101 (966)
T PRK13804         22 MRAGLPQKEPEIQARWEEIDLYKKLREQAKGRPKFVLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGWD  101 (966)
T ss_pred             CCCCCHHHCHHHHHHHHHCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             88881232699999987548999999856899976995799999998612255666899999999874899668999768


Q ss_pred             CCCHHHHHHHHHH----C------------CCHHHHHHHHHHHHHHHHHHCCCEEECCCCEECCCHHHHHHHHHHHHHHH
Q ss_conf             0205899999980----9------------99999999999999999998191766469821477359999999999999
Q gi|254780802|r   82 AFGMPAENAAREH----N------------VHPKMWTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFM  145 (869)
Q Consensus        82 ~~GlPie~~~~e~----~------------~~~~~~~~~~i~~~k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~  145 (869)
                      |||||||.++++.    +            ..|++|+.++++.|++||+|||+|+||+|+|.||||.|++++||+|.+|+
T Consensus       102 ~hGLPiE~~vek~l~~~~~~~~~~~~~~f~~~cr~~a~~~i~~~~~q~~rlG~~~DW~~~y~T~dp~y~~~~~~~F~~l~  181 (966)
T PRK13804        102 CHGLPIEWKIEEKYRAKGKNKDEVPLNEFRKECREYALSWIDVQREEFKRLGVIGDWENPYTTMDFHAEARIAREFMKFA  181 (966)
T ss_pred             CCCHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             88789999999977652898233899999999999999999999999998292022589842289899999999999999


Q ss_pred             HCCCEEECCEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             88963412213321477676778989843853345643223347523343034445443210022554322222100014
Q gi|254780802|r  146 KHNVIVRKTAQVNWDPVEQTVLANEQVINGRGWRSDAPVEQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWI  225 (869)
Q Consensus       146 ~kGliyrg~~pV~wcp~~~t~la~~Ev~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~i  225 (869)
                      ++||||||.+||+|||+|+|+|||+||++.+          +..+.+|                                
T Consensus       182 ekGliYr~~~pV~Wcp~~~TaLA~~EVey~d----------~~s~s~~--------------------------------  219 (966)
T PRK13804        182 AKGQLYRGSKPVMWSVVERTALAEAEVEYHD----------HESDTIW--------------------------------  219 (966)
T ss_pred             HCCCEEECCCCCCCCCCCCCCHHHHHHCCCC----------EECCEEE--------------------------------
T ss_conf             8799884385147689888662367547667----------8666699--------------------------------


Q ss_pred             CCCCCCCCCCCCCCCC--CCCCCEEEEEEECCCCCCCCCEEEEECCCCCCHHHHHC-----------CHHH-HHHHHHHH
Q ss_conf             5576754535556777--77751365320013444323200330244320345413-----------1458-99988653
Q gi|254780802|r  226 GRSEGMEIRWEIVSNT--IDQIEEILVYTTRPETIFGASFIAIAVDHSISEKLSCD-----------NTDI-KEFCDEEK  291 (869)
Q Consensus       226 ~~~~~~~~~~~~~~~~--~~~~~~l~~~TtrPeTl~g~~~i~v~~~~~~~~~~~~~-----------~~~~-~~~~~~~~  291 (869)
                             ++|++.+..  ...+.++++||||||||+|+++++++|+.+|+......           ...+ ...++...
T Consensus       220 -------v~f~v~~~~~~~~~~~~l~iwTTtPwTl~~n~avav~p~~~Y~~~~~~~~~~~~~~~~~~~~i~a~~l~e~~~  292 (966)
T PRK13804        220 -------VKFPVKDGKGILLTGASVVIWTTTPWTIPANRAISYSPDIEYGLYEVTGAENDNWAKPGEKLVVADALAESVA  292 (966)
T ss_pred             -------EEEEECCCCCCCCCCCCEEEEECCCCHHHCCCCEEECCCCCEEEEEECCCCCCCCCCCCCEEEEHHHHHHHHH
T ss_conf             -------9987346620004787067750785022021020245776437899504542112445515665477899999


Q ss_pred             HH-HHHHHHHHHHCCCCCCCCCEECCCCCC-----CEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCC-
Q ss_conf             11-112455543025532378610377777-----41577631123454533322211134672110122103544321-
Q gi|254780802|r  292 QK-GTSLSVLDKTEKKGIYTGIHVKHPLNP-----NVVIPVYIANFVFMNYGTGAIFGCPFADQRDMDFAKKYGLPIIP-  364 (869)
Q Consensus       292 ~~-~~~~~~~~~~~~~~~~~G~~~~~P~~~-----~~~ipv~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~k~glpi~~-  364 (869)
                      .. +..........++..|.|..+.||+.+     +..+||+.++||++++|||+||+|||||++||+++++|||++.. 
T Consensus       293 ~~~~~~~~~~~~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~d~V~~~~GTG~Vh~aPaHg~~Dy~~~~k~~L~~~~~  372 (966)
T PRK13804        293 KKAGVESFERVRDVKADDLEAIVCAHPLKGLDGGYEFEVPVLDGDHVTDDAGTGFVHTAPGHGREDFEVWMKYGRELEVR  372 (966)
T ss_pred             HHHCCCCEEEEEEECCCEECCCEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCC
T ss_conf             87376422787300150004766526665556666715789816831567785637755778878899999839873103


Q ss_pred             -----CCCCCCCCCCCCCCH---------------------------HHCCCCCCCCCCHHHCCCCHH------------
Q ss_conf             -----016776555422211---------------------------210123344583000135646------------
Q gi|254780802|r  365 -----IMKRSINHSQDIEEG---------------------------KAFSGDGIMINSSFLDGMTNT------------  400 (869)
Q Consensus       365 -----v~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~g~~~~------------  400 (869)
                           ++++.+.++.....-                           +.+.+.+.+.|+.+++|++.+            
T Consensus       373 ~~i~~~vd~~G~~~~~~~~~~g~~v~~~~G~~~~~a~~~Ii~~L~e~g~L~~~~~~~HsyP~~wR~~~Pvi~r~t~QWFi  452 (966)
T PRK13804        373 TAIPFTVDEDGFYTEDAPGFGGARVIDDKGKKYGDANKAVIEALIEAGLLLARGRLKHSYPHSWRSKKPVIFRNTPQWFI  452 (966)
T ss_pred             CCCCCCCCCCCEECCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEE
T ss_conf             57787568876065456001255421346873656279999999967996455641247763456786279960461478


Q ss_pred             ----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHC---CCCCCCCCCCCCCCCCCCCCCCCCCEECCCC-----CC
Q ss_conf             ----------65488899997404677520222111000---1112211232222234223334684634742-----00
Q gi|254780802|r  401 ----------EALQAVMSHLEKQNIKNSPIGKRKINFRL---RDWCISRQRSWGCPIPVIHCQKCGIVELPKE-----DL  462 (869)
Q Consensus       401 ----------~~~~~i~~~l~~~~~~~~~~~~~~~~~~l---~DW~ISRqr~WG~piPv~~~~~~~~~~~~~~-----~l  462 (869)
                                +.++.+++.+++..+.+. .++++...++   +|||||||||||+|||||||++|..+..++.     ++
T Consensus       453 ~~~~~~~~~~~lr~~~l~~i~~v~~~P~-~~~~r~~~~l~~~~DW~ISRQRyWG~PIPi~~~e~~~~~~~~~~~~~i~~~  531 (966)
T PRK13804        453 SMDKDLGDGGTLRSRALDAIKKTRFVPA-AGQNRLRGMIEDRPDWVISRQRAWGVPIPVFVDENGEILMDDEVNERIADA  531 (966)
T ss_pred             EECCCCCCHHHHHHHHHHHHHHCCCCCH-HHHHHHHHCCCCCCCCEEECCCCCCCCCCEEECCCCCCCCCHHHHHHHHHH
T ss_conf             7353432138999999987654350653-434455512157867666311345887517983799744575677899999


Q ss_pred             CHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCHHHHHHHCCCHHHH
Q ss_conf             0111001000224542100245642110136764435643234566643--33223355565441013566411433440
Q gi|254780802|r  463 PVQLPEDLDFTLPGNPLENHPTWKKIFCVKCGSEALRETDTMDTFVDSS--WYYMRYMTPHAKDPINKELVRQWFPVDQY  540 (869)
Q Consensus       463 ~v~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~dvld~w~dS~--~~~~~~~~~~~~~~~~~e~~~~~~P~D~~  540 (869)
                      ......+.|+..       .....-..+..++..+.|++||||+|||||  |++..           ....+..+|+|+|
T Consensus       532 ~~~~g~d~w~~~-------~~~~~~~~~~~~~~~~~r~~DvlD~WfdSgss~~~~~-----------~~~~~~~~PaD~y  593 (966)
T PRK13804        532 FEEEGADAWFAE-------GAKERFLGGFHPGEEWTKVTDILDVWFDSGSTHAFVL-----------EDRPDLPWPADLY  593 (966)
T ss_pred             HHHHCCCCCCCC-------CHHHHCCCCCCCHHHHEECCCHHHHHHHCCCCCCCCC-----------CCHHHCCCCCCEE
T ss_conf             876187633345-------7476558887874550741311446651577532011-----------5854458974168


Q ss_pred             CCCCCCCCCCCHHHHHHH-HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHCCCCCCCCCCCEECC
Q ss_conf             145554433202345553-2013478732232002222355323224332358700130620221025677754411048
Q gi|254780802|r  541 IGGIEHAVLHLLYARFFA-HILKKIGYIEIDEPFKRLFTQGMVVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSD  619 (869)
Q Consensus       541 i~g~d~~~~~~~~~r~~~-~~l~~~g~~~~~~pf~~l~~~G~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  619 (869)
                      ++|.||.       |+|+ ++|.....+...+||+++++||+|+|+                                  
T Consensus       594 ~eG~Dq~-------rgWF~s~l~~s~~~~~~~Pfk~v~~hG~VlDe----------------------------------  632 (966)
T PRK13804        594 LEGSDQH-------RGWFHSSLLESCGTRGRAPYKAVLTHGFTLDE----------------------------------  632 (966)
T ss_pred             ECCCCHH-------HHHHHHHHHHHHCCCCCCCCCCEEECCEEECC----------------------------------
T ss_conf             6254188-------86999999874220688774510341168988----------------------------------


Q ss_pred             CCEEEECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHH---HHHHCCCC
Q ss_conf             970640474210000001222210012346335666553013321111134321011455677889999---97630246
Q gi|254780802|r  620 NSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDIIWSNKGVDSTYQFIQQIWRLI---YNAKDELQ  696 (869)
Q Consensus       620 ~~~~~~~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~~~~~~~~~~d~~~s~~~i~~~~rfl~kl~~l~---~~~~~~~~  696 (869)
                             +|+|||||+||||+|.++|++||||+||||+++ ++.++|+.|+++.+....++++|+||.+   ..+.+.++
T Consensus       633 -------~G~KMSKS~GNvvdP~~ii~~yGADalRl~~as-~~~~~d~~~~~~~l~~~~~~~~ki~Nt~rf~l~nl~~f~  704 (966)
T PRK13804        633 -------KGEKMSKSLGNVVDPQDVIKQSGADILRLWVAS-VDYQDDQRIGKEILKTNAETYRKLRNTLRWMLGTLAHFD  704 (966)
T ss_pred             -------CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHH-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             -------988887878898998999987292188899984-775446345689999999999999999999998642798


Q ss_pred             CC-------CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-HHHHHHHHHHCCCCCCCC---------HHHH
Q ss_conf             67-------897569999999999999999988168899999999999-999999986211000221---------7999
Q gi|254780802|r  697 TS-------STKKDISLISKSTKFLERIEENYQNLSFNKAVANIHELV-NVISKPLMEIAKKKSNAD---------RIST  759 (869)
Q Consensus       697 ~~-------~~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai~~i~~f~-n~ls~~y~~~~k~~~~~~---------~~~~  759 (869)
                      +.       ...+|+||+++++++++.|+++|++|+|+.|++.+++|+ ++||+||+++.|+|.+++         .+++
T Consensus       705 ~~~~~~~~~l~~~D~wil~~l~~~~~~v~~~~~~Y~f~~a~~~l~~F~~~dLs~~Yle~~Kdrly~~~~~~~~rrsaq~~  784 (966)
T PRK13804        705 PGEAVAYADLPELERLMLHRLNELDATVRKAYEAFDFKTIYKALVNFMTVDLSAFYFDIRKDALYCDAPSSLRRKAALTV  784 (966)
T ss_pred             CCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf             32348922352878999999999999999985113599999999999998787999988437540579983999999999


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHC--CCCCCEEECCCCCCC
Q ss_conf             999999999997223438999999982--899835517886659
Q gi|254780802|r  760 IRYILEKLIIMMSPMIPHLAEECWQLL--GNAGLVAQQKWPKLD  801 (869)
Q Consensus       760 l~~vl~~l~~lLaPi~PhiaEEiw~~L--g~~~~i~~~~WP~~d  801 (869)
                      |+++|..++++||||+||+|||+|+.+  +.++|||++.||+.+
T Consensus       785 L~~il~~l~~llAPi~Pf~aEEiw~~~~~~~~~Sv~l~~~p~~~  828 (966)
T PRK13804        785 IYEIFDRLTKWLAPILPFTTEEAWLYRYPEEEVSVHLEQFPETP  828 (966)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCC
T ss_conf             99999999999976728999999972557899876711489997


No 13 
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00  E-value=0  Score=1201.45  Aligned_cols=628  Identities=29%  Similarity=0.513  Sum_probs=533.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             87656899989999999985980367678888389980778978987400477977899999977718985567688140
Q gi|254780802|r    3 TRSYSPQETDSIWQSAWYDSNIFKAENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDA   82 (869)
Q Consensus         3 ~~~y~~~~iE~kwq~~W~~~~~fe~~~~~~~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~   82 (869)
                      .|.|||+++|+|||+.|++++.|++.++++.++|+|..||||++|.||||||+++|+.|+++||+||+||||||||||||
T Consensus         2 ~~~ydp~~iE~k~~~~W~~~~~f~~~~~~~~~~f~I~~PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~Dh   81 (877)
T COG0525           2 PKTYDPKEIEEKWYKKWEESGYFKPDPNEDKPPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDH   81 (877)
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCC
T ss_conf             98778466508998778866985678877789727968979988865116545378999999998707973335798777


Q ss_pred             CCHHHHHHHHHH----CC------------CHHHHHHHHHHHHHHHHHHCCCEEECCCCEECCCHHHHHHHHHHHHHHHH
Q ss_conf             205899999980----99------------99999999999999999981917664698214773599999999999998
Q gi|254780802|r   83 FGMPAENAAREH----NV------------HPKMWTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMK  146 (869)
Q Consensus        83 ~GlPie~~~~e~----~~------------~~~~~~~~~i~~~k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~  146 (869)
                      +|+|+|.+++++    |+            .|++|++++.+.+++|++|||+|+||+|+|+||||.+.++|+..|.+||+
T Consensus        82 AGIaTq~~VEk~l~~~g~~r~d~gRe~Fl~~~weWk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv~Ly~  161 (877)
T COG0525          82 AGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLYE  161 (877)
T ss_pred             CCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             88308999999998709880105899999999999999989999999984787355531126798899999999999997


Q ss_pred             CCCEEECCEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             89634122133214776767789898438533456432233475233430344454432100225543222221000145
Q gi|254780802|r  147 HNVIVRKTAQVNWDPVEQTVLANEQVINGRGWRSDAPVEQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIG  226 (869)
Q Consensus       147 kGliyrg~~pV~wcp~~~t~la~~Ev~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~i~  226 (869)
                      +||||||.+||||||+|+|||||.||++-+.          +-..|                                  
T Consensus       162 ~GlIYr~~~lVNWcP~~~TAiSd~EVe~~e~----------~g~L~----------------------------------  197 (877)
T COG0525         162 KGLIYRGERLVNWCPKCRTAISDIEVEYKEV----------EGKLY----------------------------------  197 (877)
T ss_pred             CCCEEECCCCCCCCCCCCCCHHHHHHCCCCC----------CEEEE----------------------------------
T ss_conf             8946514874347886334020445000110----------03689----------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             57675453555677777751365320013444323200330244320345413145899988653111124555430255
Q gi|254780802|r  227 RSEGMEIRWEIVSNTIDQIEEILVYTTRPETIFGASFIAIAVDHSISEKLSCDNTDIKEFCDEEKQKGTSLSVLDKTEKK  306 (869)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~l~~~TtrPeTl~g~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (869)
                           .++|++.+    ..++|+|||||||||+|+++|+|||+++.+..                               
T Consensus       198 -----~i~y~l~~----~~~~i~VATTRPEtmlgdtAVaVhP~DeRYk~-------------------------------  237 (877)
T COG0525         198 -----YIKYPLAD----GDGYLVVATTRPETLLGDTAVAVHPDDERYKH-------------------------------  237 (877)
T ss_pred             -----EEEEECCC----CCCEEEEEECCCCCCCCCEEEEECCCCHHHHH-------------------------------
T ss_conf             -----99975389----98638998168630102669998998766686-------------------------------


Q ss_pred             CCCCCCEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCC
Q ss_conf             32378610377777415776311234545333222111346721101221035443210167765554222112101233
Q gi|254780802|r  307 GIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIFGCPFADQRDMDFAKKYGLPIIPIMKRSINHSQDIEEGKAFSGDG  386 (869)
Q Consensus       307 ~~~~G~~~~~P~~~~~~ipv~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~k~glpi~~v~~~~~~~~~~~~~~~~~~~~~  386 (869)
                        |+|+.+.+|+.+ +.+||+.+++|++++|||+|+++|+|+++||+++++|+||++.+++..+..+...          
T Consensus       238 --LvGk~v~lPl~~-r~IpIiaD~~VD~eFGTG~VkItpahD~nD~e~~krh~Lp~i~i~d~dG~in~~~----------  304 (877)
T COG0525         238 --LVGKEVILPLVG-REIPIIADEYVDPEFGTGAVKITPAHDFNDYEVGKRHNLPLINIIDEDGRINEEA----------  304 (877)
T ss_pred             --HCCCEEECCCCC-CEEEEECCCCCCCCCCCCEEEECCCCCCCHHHHHHCCCCCCEEEECCCCEECCCC----------
T ss_conf             --358889646889-7533534733477678741897169994065453017987206888997054677----------


Q ss_pred             CCCCCHHHCCCCHHHHHHHHHHHHHHHCCC-------------------------------------------------C
Q ss_conf             445830001356466548889999740467-------------------------------------------------7
Q gi|254780802|r  387 IMINSSFLDGMTNTEALQAVMSHLEKQNIK-------------------------------------------------N  417 (869)
Q Consensus       387 ~~~~~~~~~g~~~~~~~~~i~~~l~~~~~~-------------------------------------------------~  417 (869)
                          .+.+.||.+.+|+++|++.|++.|..                                                 .
T Consensus       305 ----~~~~~Gl~r~eAR~kIv~~L~~~GlLvk~e~~~h~V~~~~R~g~~IEp~ls~QWfVk~~~la~~~l~~~~~g~i~f  380 (877)
T COG0525         305 ----AGEFAGLDRFEARKKIVEDLEEQGLLVKIEPHKHSVGHCERCGTPIEPLLSKQWFVKVLELAKKALEAVKDGKIKF  380 (877)
T ss_pred             ----CCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEEEECCEEEEEHHHHHHHHHHHHHCCCCEE
T ss_conf             ----6445898699999999999996899676644454176116779602012324214870752699999874598468


Q ss_pred             CCHHHHHHHH----HCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf             5202221110----001112211232222234223334684634742000111001000224542100245642110136
Q gi|254780802|r  418 SPIGKRKINF----RLRDWCISRQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTWKKIFCVKC  493 (869)
Q Consensus       418 ~~~~~~~~~~----~l~DW~ISRqr~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l~~~~~~~~~~~~~~  493 (869)
                      .|..-+..++    .++|||||||||||||||+|||.+||.+.+.++ .+    ++...              ...|+. 
T Consensus       381 ~P~~~~~~~~~W~~~i~DWcISRQlwwGh~IPvWy~~~~g~v~v~~~-~~----~~~~~--------------~~~~~~-  440 (877)
T COG0525         381 VPERMEKRYEDWMENIRDWCISRQLWWGHRIPVWYCKECGNVVVAEE-EP----EDPAA--------------AEKCPK-  440 (877)
T ss_pred             ECHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEECCCCCEEECCC-CC----CCHHH--------------HCCCCH-
T ss_conf             16889988999986383764222113176351599669983896786-54----35354--------------246822-


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             76443564323456664333223355565441013566411433440145554433202345553201347873223200
Q gi|254780802|r  494 GSEALRETDTMDTFVDSSWYYMRYMTPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIGYIEIDEPF  573 (869)
Q Consensus       494 ~~~~~r~~dvld~w~dS~~~~~~~~~~~~~~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~g~~~~~~pf  573 (869)
                       ....+++||||+||+||++++..+++...    ...++.++|+|++++|.|  |+++|.+|+.+..++.+|    +.||
T Consensus       441 -~~~~qd~DVLDTWFSS~LwPfstlgWp~~----t~~l~~fyPt~llvtG~D--IIffWvarmi~~~~~~~~----~~PF  509 (877)
T COG0525         441 -EELEQDEDVLDTWFSSSLWPFSTLGWPEE----TPDLKKFYPTDLLVTGHD--IIFFWVARMIMRGLHLTG----EVPF  509 (877)
T ss_pred             -HCCCCCCCHHHHHHHCCCCCCCCCCCCCC----CHHHHHCCCCCEECCCCH--HHHHHHHHHHHHHHHHCC----CCCC
T ss_conf             -02057852323324115646400689874----447773588730035531--338999999999998658----9996


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCCCCCCHHHH
Q ss_conf             22223553232243323587001306202210256777544110489706404742100000012222100123463356
Q gi|254780802|r  574 KRLFTQGMVVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTA  653 (869)
Q Consensus       574 ~~l~~~G~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~~yGaD~l  653 (869)
                      +++++||+|.|+                                         +|+||||||||||+|.++|++||||+|
T Consensus       510 k~V~ihGLVrDe-----------------------------------------~G~KMSKS~GNvIDP~d~I~~yGaDAl  548 (877)
T COG0525         510 KDVYIHGLVRDE-----------------------------------------QGRKMSKSKGNVIDPLDVIDKYGADAL  548 (877)
T ss_pred             CEEEEEEEEECC-----------------------------------------CCCCCCCCCCCCCCHHHHHHHHCHHHH
T ss_conf             278981167868-----------------------------------------888875557885897999988485899


Q ss_pred             HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC---CCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             6655301332111113432101145567788999997630---2466------789756999999999999999998816
Q gi|254780802|r  654 RLFVLSDSPPDRDIIWSNKGVDSTYQFIQQIWRLIYNAKD---ELQT------SSTKKDISLISKSTKFLERIEENYQNL  724 (869)
Q Consensus       654 Rl~~~~~~~~~~d~~~s~~~i~~~~rfl~kl~~l~~~~~~---~~~~------~~~~~D~~ils~~~~~i~~v~~~~e~~  724 (869)
                      |||+++.+.+++|++|+++.+++++||+||+||...++..   ....      ..+..|+||+++++++++.|+++|++|
T Consensus       549 Rf~la~~~~~G~Di~~~~~~~~~~rnF~nKlWNa~Rfv~~~~~~~~~~~~~~~~~~~~drWIls~l~~~v~~v~~~ld~y  628 (877)
T COG0525         549 RFTLASLASPGRDINFDEKRVEGYRNFLNKLWNATRFVLMNLDDLGPDDLDLLALSLADRWILSRLNETVKEVTEALDNY  628 (877)
T ss_pred             HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999536888665768899888999999987499999852544576543322235488999999999999999999862


Q ss_pred             CHHHHHHHHHHHH-HHHHHHHHHHCCCCCCC------CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEECCC
Q ss_conf             8899999999999-99999998621100022------1799999999999999722343899999998289983551788
Q gi|254780802|r  725 SFNKAVANIHELV-NVISKPLMEIAKKKSNA------DRISTIRYILEKLIIMMSPMIPHLAEECWQLLGNAGLVAQQKW  797 (869)
Q Consensus       725 ~f~~ai~~i~~f~-n~ls~~y~~~~k~~~~~------~~~~~l~~vl~~l~~lLaPi~PhiaEEiw~~Lg~~~~i~~~~W  797 (869)
                      +|+.|.+.+|+|+ |+||+||++++|.+.+.      ....+|+++|+.+++||||||||+|||||+.+.+.+||+.+.|
T Consensus       629 ~f~~a~~~ly~F~W~~fcD~YlEl~K~~l~~~~~~~~~a~~tL~~vl~~~lrLLhPfmPfiTEei~q~l~~~~si~~~~~  708 (877)
T COG0525         629 RFDEAARALYEFIWNDFCDWYLELAKPRLYGGEEEKRAARATLYYVLDTLLRLLHPFMPFITEEIWQKLPGTESIHLASW  708 (877)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCEEEECCC
T ss_conf             37889999999969989899999821440285777899999999999999998488775015789986589883784168


Q ss_pred             CCCCHH
Q ss_conf             665967
Q gi|254780802|r  798 PKLDPI  803 (869)
Q Consensus       798 P~~d~~  803 (869)
                      |++++.
T Consensus       709 P~~~~~  714 (877)
T COG0525         709 PEVDEE  714 (877)
T ss_pred             CCCCHH
T ss_conf             986311


No 14 
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=100.00  E-value=0  Score=1094.88  Aligned_cols=670  Identities=22%  Similarity=0.330  Sum_probs=483.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH------------------------HCCCHHHHHHH
Q ss_conf             740047797789999997771898556768814020589999998------------------------09999999999
Q gi|254780802|r   49 IHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAARE------------------------HNVHPKMWTYQ  104 (869)
Q Consensus        49 lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e------------------------~~~~~~~~~~~  104 (869)
                      |||||++|||++|+++|||||+|||||||||||||||||+++|++                        ++.+|+.|+.+
T Consensus         1 LH~GH~~~~ti~DiiaRykrM~G~~Vl~p~GwD~~GlPi~~~ae~~~~~~~~~~~~~~~~~~~~~~~i~k~~~~~~~~~~   80 (888)
T PRK12300          1 LHIGHGRTYTIGDIYARYKRMKGYNVLFPMGFHVTGTPILGIAERIAEGDPETIDIYRNLYGIPEEEIEKFKDPEYIVEY   80 (888)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             94055478799999999998079977999988889953899999986044468999877513668888875009999999


Q ss_pred             HHHHHHHHHHHCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCHHHHHCCCCCCCCCCC
Q ss_conf             99999999998191766469821477359999999999999889634122133214776767789898438533456432
Q gi|254780802|r  105 NIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQVINGRGWRSDAPV  184 (869)
Q Consensus       105 ~i~~~k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~pV~wcp~~~t~la~~Ev~~g~~~~~~~~v  184 (869)
                      +++.|++||+|||+|+||+|+|+|+||.|++++||+|.+|+++||||||.+||+|||+|+||||||||++|+...     
T Consensus        81 ~~~~~~~q~~rlG~s~DW~re~~T~dp~y~~~v~w~F~kL~ekGliyrg~~~V~WcP~~~T~la~~ev~~~~~~~-----  155 (888)
T PRK12300         81 FSKEAKEAMKRIGYSIDWRREFTTTDPEYSKFIEWQFRKLKEKGLIVKGSHPVGWCPKDENPVGDHDTKDGEEPT-----  155 (888)
T ss_pred             HHHHHHHHHHHHCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCEEECCCCCCCCCCCCCHHHCCCCCC-----
T ss_conf             999999999983860636998664888799999999999997799497877867259878482220555087755-----


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEE
Q ss_conf             23347523343034445443210022554322222100014557675453555677777751365320013444323200
Q gi|254780802|r  185 EQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIRWEIVSNTIDQIEEILVYTTRPETIFGASFI  264 (869)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~TtrPeTl~g~~~i  264 (869)
                       ..                                         +.+.++|+      ..+.++++||||||||||++++
T Consensus       156 -~~-----------------------------------------~~~~ikf~------~~~~~l~v~TTrPeTl~g~ta~  187 (888)
T PRK12300        156 -IG-----------------------------------------EYTLIKFE------GDDLILPAATLRPETVFGVTNL  187 (888)
T ss_pred             -EE-----------------------------------------EEEEEEEC------CCCEEEEEEECCHHHHHHHHEE
T ss_conf             -16-----------------------------------------89999971------7982799972680254300003


Q ss_pred             EEECCCCCCHHHHHCCHHH--HHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEEEEEECCCCCCCCCCCCCC
Q ss_conf             3302443203454131458--99988653111124555430255323786103777774157763112345453332221
Q gi|254780802|r  265 AIAVDHSISEKLSCDNTDI--KEFCDEEKQKGTSLSVLDKTEKKGIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIF  342 (869)
Q Consensus       265 ~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~P~~~~~~ipv~~~~~V~~~~GTG~V~  342 (869)
                      ||+|+++|+.....++..+  .+.+...+.+..... .....+++.|+|++++||++++ .+||++++||++++|||+||
T Consensus       188 ~v~Pd~~Yv~~~~~~e~~i~~~~~~~~l~~~~~~~~-~~~~~~g~~l~G~~~~~P~~~~-~ipI~~ad~V~~~~GTG~V~  265 (888)
T PRK12300        188 WVNPDAEYVVAEVDGEKWIVSKEAARKLSFQDREVE-IIEEIKGSELIGKKVKNPVTGK-EVPILPAKFVDPDNGTGVVM  265 (888)
T ss_pred             EECCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEE-EEEEECCCEECCEEEECCCCCC-EEEEEECCEECCCCCCCEEE
T ss_conf             777763234564277200899999999862221136-7532026330350898678898-73598614074788977289


Q ss_pred             CCCCCCCCCCHHHHCCCCC------CCCCCCCCCCCCCCCCCHH----------------HCC---CCCCCC-CCHHHCC
Q ss_conf             1134672110122103544------3210167765554222112----------------101---233445-8300013
Q gi|254780802|r  343 GCPFADQRDMDFAKKYGLP------IIPIMKRSINHSQDIEEGK----------------AFS---GDGIMI-NSSFLDG  396 (869)
Q Consensus       343 ~~P~h~~~D~~~~~k~glp------i~~v~~~~~~~~~~~~~~~----------------~~~---~~~~~~-~~~~~~g  396 (869)
                      +|||||++||.++++++++      ++.+.+.+.....++.+..                .+.   .+|++. +.+.+.|
T Consensus       266 ~vPaHd~~Dy~~~~~~~~~~~~~i~ii~v~~~g~~p~~~~~~~~~i~~~~d~~l~~a~~~~y~~e~~~G~l~~~~~~~~G  345 (888)
T PRK12300        266 SVPAHAPYDYVALRDLDVEEIELIPLIKVEGYGEFPAKEIVEKMGIKSQKDPELEEATKELYKAEFHKGVLREDTGEYAG  345 (888)
T ss_pred             ECCCCCHHHHHHHHHCCCCCCCCCCCEEECCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEECCCCHHCCC
T ss_conf             65789877899998607242467772320566775277777750776644234777766542223117534156511069


Q ss_pred             CCHHHHHHHHHHHHHHHCCCC-------------------------CCH---H----HH-------HHH-----------
Q ss_conf             564665488899997404677-------------------------520---2----22-------111-----------
Q gi|254780802|r  397 MTNTEALQAVMSHLEKQNIKN-------------------------SPI---G----KR-------KIN-----------  426 (869)
Q Consensus       397 ~~~~~~~~~i~~~l~~~~~~~-------------------------~~~---~----~~-------~~~-----------  426 (869)
                      +.+.+|++.+.++|.+.+...                         .|+   +    +.       .+.           
T Consensus       346 ~~v~eA~~~i~~~L~~~g~~~~~y~~~~~~v~~R~g~~~v~~~~~dQWFi~~~~~~~k~~~~~~~~~i~~~P~~~~~~~~  425 (888)
T PRK12300        346 KPVREAREKITEDLIESGIAEIMYEFSEKPVYCRCGTECVVKVVKDQWFIDYSNPEWKELAHKCLDRMRIIPEEARAEFE  425 (888)
T ss_pred             CCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCEEECCHHHHHHH
T ss_conf             79999999999999977997403035778867899986763416876410478767789999876166565721345578


Q ss_pred             ---HHCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCC-CCCCCCC
Q ss_conf             ---000111221123222223422333468463474200011100100022454210024564211013676-4435643
Q gi|254780802|r  427 ---FRLRDWCISRQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTWKKIFCVKCGS-EALRETD  502 (869)
Q Consensus       427 ---~~l~DW~ISRqr~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~r~~d  502 (869)
                         .+++||||||||+||+||| |.+  .+.+....        +..++.....      .  ...+...+. ......+
T Consensus       426 ~~l~~l~DW~iSRqr~wGtpiP-wd~--~~~iesl~--------dstiy~~~yt------~--~~~~~~~~~~~~~l~~~  486 (888)
T PRK12300        426 NKIDWLKDRACARRRGLGTPLP-WDE--RWVIESLS--------DSTIYMAYYT------I--AKKIRQYGLDPEQLTPE  486 (888)
T ss_pred             HHHHCCCCCCCCCCCCCCCCCC-CCC--CEEEECCC--------CCCCHHHHHH------H--HHHHHCCCCCHHHCCCH
T ss_conf             7761468865456667697887-048--82342277--------7640010246------8--78763348995675810


Q ss_pred             CCCCCCCCCCCC----CCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             234566643332----2335556544101356641143344014555443320234555320134787322320022223
Q gi|254780802|r  503 TMDTFVDSSWYY----MRYMTPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIGYIEIDEPFKRLFT  578 (869)
Q Consensus       503 vld~w~dS~~~~----~~~~~~~~~~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~g~~~~~~pf~~l~~  578 (869)
                      ++|.+|-+....    .....+.......++.+++|||+|++++|.|++.+|++|++|.+..+.+...    .| +.+++
T Consensus       487 ~~d~v~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~wyP~D~~~~G~D~i~~hl~f~~~~~~aif~~~~----~p-k~v~~  561 (888)
T PRK12300        487 FFDYVFLGKGDPEEISKKTGIPKEILEEMREEFEYWYPLDWRHSGKDLIPNHLTFFIFNHVAIFPEEK----WP-RGIVV  561 (888)
T ss_pred             HCCEEECCCCCHHHHHHHHCCCHHHHHHHHHHHCEECCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCC----CC-CEEEE
T ss_conf             13043148997666666519988899986886464267601435310335679999988688717777----88-75798


Q ss_pred             CCCCCCCCCCCCCCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             55323224332358700130620221025677754411048970640474210000001222210012346335666553
Q gi|254780802|r  579 QGMVVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVL  658 (869)
Q Consensus       579 ~G~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~~~  658 (869)
                      ||++++                                          +|+||||||||||+|.++|++||||++|||++
T Consensus       562 ~G~Vl~------------------------------------------eG~KMSKSkGNvV~P~eiI~~YGADalRl~l~  599 (888)
T PRK12300        562 NGFVLL------------------------------------------EGKKMSKSKGNVLPLREAIEEYGADVVRLYLA  599 (888)
T ss_pred             EEEEEC------------------------------------------CCEECCCCCCCCCCHHHHHHHCCCCHHHHHHH
T ss_conf             328945------------------------------------------98770303489899899997619629999999


Q ss_pred             HCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf             01332111113432101145567788999997630246-67897569999999999999999988168899999999999
Q gi|254780802|r  659 SDSPPDRDIIWSNKGVDSTYQFIQQIWRLIYNAKDELQ-TSSTKKDISLISKSTKFLERIEENYQNLSFNKAVANIHELV  737 (869)
Q Consensus       659 ~~~~~~~d~~~s~~~i~~~~rfl~kl~~l~~~~~~~~~-~~~~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai~~i~~f~  737 (869)
                      +++++++|++|+++++++++||++++|+++....+... .+....|+||++++|+++++|+++||+|+|++|++.++.++
T Consensus       600 ~~a~~~~d~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~D~wils~l~~~i~~v~~~~e~~~f~~a~~~~~~~~  679 (888)
T PRK12300        600 STAELSQDADFREKEAESIRRQLERFYELAVELAEEESEEELRFIDKWLLSRLYSYIKEVTEAMEEFQTRKAIQEIFYNL  679 (888)
T ss_pred             HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf             71885568645799999999999999999997632677767766789999999999999999998445999999999999


Q ss_pred             HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHCCCCEEEEEEC
Q ss_conf             99999998621100022179999999999999972234389999999828998355178866596786037714989973
Q gi|254780802|r  738 NVISKPLMEIAKKKSNADRISTIRYILEKLIIMMSPMIPHLAEECWQLLGNAGLVAQQKWPKLDPILEVNTDIILPIQVN  817 (869)
Q Consensus       738 n~ls~~y~~~~k~~~~~~~~~~l~~vl~~l~~lLaPi~PhiaEEiw~~Lg~~~~i~~~~WP~~d~~~~~~~~~~~~iqin  817 (869)
                      ....+||++..+.    ....+|+++|+.+++|||||+||+|||||+.||+++|||+++||++|+++.. .+        
T Consensus       680 ~~~~~~Y~~~~~~----~~~~~l~~~l~~~~~LLaP~~PhiaEElW~~Lg~~~sV~~a~wP~~de~~id-~~--------  746 (888)
T PRK12300        680 LNDLRWYLRRGGE----PNNKVLREVIEIWIRLLAPFTPHLAEEIWEKLGGEGFVSLAPWPEPDESKID-EE--------  746 (888)
T ss_pred             HHHHHHHHHHHCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCC-HH--------
T ss_conf             9999999987371----8899999999999999604104889999996799983770799999934279-89--------


Q ss_pred             CEEEEEEECCCCCCHHHHHHHHHCCHHHHHHHCCCCCEEEEECCC
Q ss_conf             816679980888899999999974788899846998259998189
Q gi|254780802|r  818 GKKRACITVSMNTDDDFIKKTVLELNVIKNILQGKSPKKIIIISK  862 (869)
Q Consensus       818 gk~r~~i~v~~~~~~~~i~~~~~~~~~i~~~l~~k~~~k~I~v~~  862 (869)
                                .+...+.+++++.+.+++.+..+.++-+-+|||++
T Consensus       747 ----------~e~~~~~~~~~i~~ir~~~~~~~~~p~~~~i~va~  781 (888)
T PRK12300        747 ----------AELAEEYVKNLIEDIKEIIKVAKINPKRVYIYVAP  781 (888)
T ss_pred             ----------HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC
T ss_conf             ----------99999999999999999998619998669999796


No 15 
>TIGR00395 leuS_arch leucyl-tRNA synthetase; InterPro: IPR004493   The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases .    Leucyl tRNA synthetase (6.1.1.4 from EC) is an alpha monomer that belongs to class Ia. There are two different families of leucyl-tRNA synthetases. This family includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases.; GO: 0000166 nucleotide binding, 0004823 leucine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006429 leucyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=100.00  E-value=0  Score=1108.07  Aligned_cols=716  Identities=25%  Similarity=0.387  Sum_probs=549.4

Q ss_pred             HHHHHHHHHHHHCCCCCCC----------CCCCCC------CEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             9989999999985980367----------678888------389980778978987400477977899999977718985
Q gi|254780802|r   10 ETDSIWQSAWYDSNIFKAE----------NGKNKK------KYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYS   73 (869)
Q Consensus        10 ~iE~kwq~~W~~~~~fe~~----------~~~~~~------kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~   73 (869)
                      +||+|||++|+++++||++          ++ +++      |||+|.+|||+||.||+||.||+|+.|++|||+||+|||
T Consensus         2 ~IE~Kwqk~W~~~~iFe~daPsieDePitpd-~~ElhrtYPKff~t~AYPYlnG~lHaGH~rT~t~~e~~arF~RM~Gkn   80 (1109)
T TIGR00395         2 AIEKKWQKRWEEAKIFEADAPSIEDEPITPD-DRELHRTYPKFFLTVAYPYLNGVLHAGHLRTFTIPEVVARFERMKGKN   80 (1109)
T ss_pred             CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC-CHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCE
T ss_conf             4125678735544775147776567888886-113431155032015765567442123344333131588766106840


Q ss_pred             CCCCCCCCCCCHHHHHHHHH------------------------------------------------------------
Q ss_conf             56768814020589999998------------------------------------------------------------
Q gi|254780802|r   74 VLHPMGWDAFGMPAENAARE------------------------------------------------------------   93 (869)
Q Consensus        74 Vl~~~G~d~~GlPie~~~~e------------------------------------------------------------   93 (869)
                      ||||+||||||+||.+.|+.                                                            
T Consensus        81 vLFPlGfHvTG~Pilg~A~~i~~~de~t~~~Y~~~h~eeeeikeetPaekDheDvtkfkakkskaaakkGrGkYqfeiml  160 (1109)
T TIGR00395        81 VLFPLGFHVTGTPILGLAELIKRRDEKTIKVYTEVHAEEEEIKEETPAEKDHEDVTKFKAKKSKAAAKKGRGKYQFEIML  160 (1109)
T ss_pred             ECCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf             02246544358627889999730060467885205751344301577644414566665444356664178731245633


Q ss_pred             ----------HCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCEECCC--HHHHHHHHHHHHHHHHCCCEEECCEEEECCC
Q ss_conf             ----------0999999999999999999998191766469821477--3599999999999998896341221332147
Q gi|254780802|r   94 ----------HNVHPKMWTYQNIKVMRKQLQSIGLSIDWSKDFATCD--VDYYHCQQLLFLDFMKHNVIVRKTAQVNWDP  161 (869)
Q Consensus        94 ----------~~~~~~~~~~~~i~~~k~~~~~lG~~~DW~r~y~T~d--~~y~~~v~w~f~~L~~kGliyrg~~pV~wcp  161 (869)
                                +..+|+.|+++|.....+.|++||+|+||||.|+|+|  |.|.+|++|||.||.++|||.+|.|||.|||
T Consensus       161 qlGiP~eel~~l~dpe~iveYFs~~~~~~~~~~G~siDWRR~F~TtDan~~Y~~FI~WQ~~KLk~~Gli~kG~hpv~Ycp  240 (1109)
T TIGR00395       161 QLGIPREELLKLTDPEYIVEYFSREAESALKSMGYSIDWRREFKTTDANPVYDRFIEWQIRKLKELGLIVKGEHPVRYCP  240 (1109)
T ss_pred             ECCCCHHHHHHHCCCCEEEECCCHHHHHHHHHCCCEEECCCCCEECCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCC
T ss_conf             13798799972048430210388779999986488052255521258746667899999999986595441786602377


Q ss_pred             CCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             76767789898438533456432233475233430344454432100225543222221000145576754535556777
Q gi|254780802|r  162 VEQTVLANEQVINGRGWRSDAPVEQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIRWEIVSNT  241 (869)
Q Consensus       162 ~~~t~la~~Ev~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~i~~~~~~~~~~~~~~~~  241 (869)
                      +|++||.|||+..||+.      ...++..+-|+..+.++.-.                           .+--.-.+-.
T Consensus       241 ~d~npv~DHD~l~GE~v------t~~ey~~~Kf~~~d~~DDaa---------------------------kiiDsssDlD  287 (1109)
T TIGR00395       241 KDENPVEDHDLLSGEGV------TIVEYILIKFKLEDGADDAA---------------------------KIIDSSSDLD  287 (1109)
T ss_pred             CCCCCCCCCCCCCCCCC------CCEEEEEEEEEECCCCCCHH---------------------------HHHHHHHHHH
T ss_conf             77685445553335643------30103676666427753024---------------------------5431111010


Q ss_pred             CCCCCEEEEEEECCCCCCCCCEEEEECCCCCCHHHHHCCH----HH-----------HHHHHHHHHHHHH-----HHHHH
Q ss_conf             7775136532001344432320033024432034541314----58-----------9998865311112-----45554
Q gi|254780802|r  242 IDQIEEILVYTTRPETIFGASFIAIAVDHSISEKLSCDNT----DI-----------KEFCDEEKQKGTS-----LSVLD  301 (869)
Q Consensus       242 ~~~~~~l~~~TtrPeTl~g~~~i~v~~~~~~~~~~~~~~~----~~-----------~~~~~~~~~~~~~-----~~~~~  301 (869)
                      .++..++++||+||||+||+|||||+|+.+|+..-+.++.    ++           +++.+..+.+...     +.++ 
T Consensus       288 kskk~~~v~ATLRPET~yG~Tn~wv~P~~~Yv~~~~~~e~etenGielienGiwi~~~~A~~~L~yq~~~PkrGf~~~~-  366 (1109)
T TIGR00395       288 KSKKLYFVAATLRPETVYGVTNVWVNPDITYVIAEVGGEKETENGIELIENGIWIVSKEAVENLSYQKLKPKRGFLKVI-  366 (1109)
T ss_pred             CCCCEEEECCCCCCCHHHCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCEEEEE-
T ss_conf             1451664035688741007553555577516899733740012004455422577789999604343458874227886-


Q ss_pred             HHCCCCCCCCCEECCC-CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC----------HHHHCCCC----------
Q ss_conf             3025532378610377-77741577631123454533322211134672110----------12210354----------
Q gi|254780802|r  302 KTEKKGIYTGIHVKHP-LNPNVVIPVYIANFVFMNYGTGAIFGCPFADQRDM----------DFAKKYGL----------  360 (869)
Q Consensus       302 ~~~~~~~~~G~~~~~P-~~~~~~ipv~~~~~V~~~~GTG~V~~~P~h~~~D~----------~~~~k~gl----------  360 (869)
                      ....++.|+|.++.+| +++.. +||||++||+++.|||||||||||+|.||          ++..+||+          
T Consensus       367 ~~v~g~~liG~~v~~Pq~v~~e-~pILPa~fV~~~~gTGvV~sVPahaP~Dyia~~DL~~d~E~l~~YGi~k~~v~di~~  445 (1109)
T TIGR00395       367 EEVDGKQLIGKKVKNPQVVGKE-VPILPAEFVDTEKGTGVVMSVPAHAPADYIALEDLKRDEELLEKYGIIKDVVEDIEP  445 (1109)
T ss_pred             EEECHHHHCCCEEECCCCCCCC-CCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCHHHHHHCCCCHHHHHCCCC
T ss_conf             5307342417644577325897-754770112678885478841788703589998607780145532773246641485


Q ss_pred             -CCCCCCCCCCCCCCCCCCHHHC--------------------CCCCCCC-CCHHHCCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf             -4321016776555422211210--------------------1233445-83000135646654888999974046775
Q gi|254780802|r  361 -PIIPIMKRSINHSQDIEEGKAF--------------------SGDGIMI-NSSFLDGMTNTEALQAVMSHLEKQNIKNS  418 (869)
Q Consensus       361 -pi~~v~~~~~~~~~~~~~~~~~--------------------~~~~~~~-~~~~~~g~~~~~~~~~i~~~l~~~~~~~~  418 (869)
                       |++.+..+|..+++.+.+....                    -.+|++. |.-.|.|+.+++|++.+.++|.+.|....
T Consensus       446 v~~i~~~~yG~~pA~~ive~~gi~sq~dk~~L~~Atk~~YK~ey~~Gvm~~~~~~Y~G~kV~eak~~v~~dL~~~GlA~v  525 (1109)
T TIGR00395       446 VPLIKVDGYGDLPAKEIVEELGIKSQKDKNLLEEATKELYKEEYHTGVMIENILDYKGMKVSEAKEKVKEDLIDKGLADV  525 (1109)
T ss_pred             EEEEEECCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCHHHCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf             56763088777548999988288887720247887400221321500320477578861179999999999985378602


Q ss_pred             CH--HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCH---------------
Q ss_conf             20--2221110001112211232222234223334684634742000111001000224542100---------------
Q gi|254780802|r  419 PI--GKRKINFRLRDWCISRQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLEN---------------  481 (869)
Q Consensus       419 ~~--~~~~~~~~l~DW~ISRqr~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l~~---------------  481 (869)
                      -.  +.+.        .|||               ||.      .|.|++.+||||..|++.-|+               
T Consensus       526 ~yEFsE~~--------VicR---------------cG~------~CiV~v~~DQWF~~Ys~~~WK~~a~~CLegM~~ip~  576 (1109)
T TIGR00395       526 MYEFSEKP--------VICR---------------CGT------KCIVKVVEDQWFVKYSDESWKELAHECLEGMRIIPE  576 (1109)
T ss_pred             ECCCCCCC--------EEEC---------------CCC------CCEEEEECCEEEEECCCHHHHHHHHHHHHCCCCCCH
T ss_conf             01657885--------1202---------------679------606988516001114515689999987433732768


Q ss_pred             --------HHHHHH-HHHC---CCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCHHHHHH-HCCCHHHHCCCCCCC
Q ss_conf             --------245642-1101---367644356432-34566643332233555654410135664-114334401455544
Q gi|254780802|r  482 --------HPTWKK-IFCV---KCGSEALRETDT-MDTFVDSSWYYMRYMTPHAKDPINKELVR-QWFPVDQYIGGIEHA  547 (869)
Q Consensus       482 --------~~~~~~-~~~~---~~~~~~~r~~dv-ld~w~dS~~~~~~~~~~~~~~~~~~e~~~-~~~P~D~~i~g~d~~  547 (869)
                              ..+|.+ ..|.   .+|++++++..+ +++++||++|+++|+..|.-.   +.... ..-|.-  + +.||-
T Consensus       577 ~~k~~F~~~idWL~dwAc~Rr~GLGTrlPwde~wliESLsDSTIY~aYYtiA~~l~---~~~~g~EiGPlG--i-saD~m  650 (1109)
T TIGR00395       577 EVKEAFEEKIDWLKDWACARRKGLGTRLPWDEKWLIESLSDSTIYMAYYTIAKYLN---KDDLGNEIGPLG--I-SADQM  650 (1109)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHH---HCCCCCCCCCCC--C-CHHCC
T ss_conf             88888877666423630461246777787567547712762325678999999985---214577645554--4-42005


Q ss_pred             CCCCHHHHHHHHHCCCCCCCC-----CCCCCCCCCCCCCCC-CCCCCCCC-CCCCEEECCCHHHC-----CCCCCCCCCC
Q ss_conf             332023455532013478732-----232002222355323-22433235-87001306202210-----2567775441
Q gi|254780802|r  548 VLHLLYARFFAHILKKIGYIE-----IDEPFKRLFTQGMVV-HETYYQLE-GIKKKYLKPDEVIL-----RNIEGENCAF  615 (869)
Q Consensus       548 ~~~~~~~r~~~~~l~~~g~~~-----~~~pf~~l~~~G~v~-~~~~~~~~-~~~~~~~~p~~~~~-----~~~~~~~~~~  615 (869)
                      +     -.|+.|++++-|.+.     ..-|-  -.+++|.. .+.|||++ ++|+|+|+||||.|     .+++|+..||
T Consensus       651 t-----~E~fDyifl~~gdV~K~Ak~t~ip~--~~~~~lR~eF~Y~YPlD~r~SgKDLi~NHLtFyiF~HvAiFP~~~WP  723 (1109)
T TIGR00395       651 T-----DEFFDYIFLGKGDVDKVAKNTNIPL--ELIEKLREEFEYWYPLDWRISGKDLIPNHLTFYIFHHVAIFPEKFWP  723 (1109)
T ss_pred             C-----HHHHHHHHCCCCCHHHHHHHHCCCH--HHHHHHHHHCCEECCCCCCCCCCCCCHHHHHHHHHHEEEECCCCCCC
T ss_conf             7-----4452243238871567765407888--89987554341005601002431010346776644002424879897


Q ss_pred             EECCCCEEEECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             10489706404742100000012222100123463356665530133211111343210114556778899999763024
Q gi|254780802|r  616 RLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDIIWSNKGVDSTYQFIQQIWRLIYNAKDEL  695 (869)
Q Consensus       616 ~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~~~~~~~~~~d~~~s~~~i~~~~rfl~kl~~l~~~~~~~~  695 (869)
                      +....|+.+..+|.|||||+||++++.+++++||||+.|||++++|+..+|++|.++.+.++.+.|.+|+++...+....
T Consensus       724 rGi~vnG~~~Leg~KmSkSkGn~l~l~~~vekfGADv~Rl~~~~aAe~~~Dad~~~~e~~~~~~~L~~l~~~a~e~~~~~  803 (1109)
T TIGR00395       724 RGIVVNGYVLLEGKKMSKSKGNVLTLKEAVEKFGADVARLYILDAAELVQDADWKESEVEGTKKRLERLYEFAEEITKKS  803 (1109)
T ss_pred             CEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             61799757887173405454762238899987276189999973178721356106778999999999999999985430


Q ss_pred             C-----------CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH-HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf             6-----------6789756999999999999999998816889999-999999999999998621100022179999999
Q gi|254780802|r  696 Q-----------TSSTKKDISLISKSTKFLERIEENYQNLSFNKAV-ANIHELVNVISKPLMEIAKKKSNADRISTIRYI  763 (869)
Q Consensus       696 ~-----------~~~~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai-~~i~~f~n~ls~~y~~~~k~~~~~~~~~~l~~v  763 (869)
                      +           ...+.+|+|+++++|+.|++++++|+++++++|+ .+||+|.+++ +||++.+..+..-+.+++|..+
T Consensus       804 ~GrPvl~e~GPaE~~~f~D~wl~~~l~~~i~~~~e~~~~~~~r~A~~~~Lf~L~~d~-~~Y~~r~g~~~~Devksvla~~  882 (1109)
T TIGR00395       804 DGRPVLLEVGPAEELSFIDRWLLSRLNKAIKEVTEAMENFQTRKAVKAALFDLKADV-DWYRRRGGENVKDEVKSVLARV  882 (1109)
T ss_pred             CCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCCCHHHHHHHHHHH
T ss_conf             684011035777631052189999999999999999986667899999999999999-9999864884005799999999


Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHC-CCCCCEEECCCCCCCHHH
Q ss_conf             99999997223438999999982-899835517886659678
Q gi|254780802|r  764 LEKLIIMMSPMIPHLAEECWQLL-GNAGLVAQQKWPKLDPIL  804 (869)
Q Consensus       764 l~~l~~lLaPi~PhiaEEiw~~L-g~~~~i~~~~WP~~d~~~  804 (869)
                      |+++++|||||+||+|||||+.+ |+++||++++||++++..
T Consensus       883 l~~~i~LlaPf~Ph~aEe~w~~~lG~~~fV~~a~fP~~~~~~  924 (1109)
T TIGR00395       883 LETWIKLLAPFAPHLAEEMWEEVLGKEGFVSLAKFPEASEEA  924 (1109)
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHH
T ss_conf             999999832312168999999970887311367798987502


No 16 
>pfam00133 tRNA-synt_1 tRNA synthetases class I (I, L, M and V). Other tRNA synthetase sub-families are too dissimilar to be included.
Probab=100.00  E-value=0  Score=1054.06  Aligned_cols=546  Identities=26%  Similarity=0.416  Sum_probs=422.6

Q ss_pred             HHHHHHHHCCCCCC--CCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             99999998598036--7678888389980778978987400477977899999977718985567688140205899999
Q gi|254780802|r   14 IWQSAWYDSNIFKA--ENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAA   91 (869)
Q Consensus        14 kwq~~W~~~~~fe~--~~~~~~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~   91 (869)
                      ++|++|+++++||+  +.++++|||++++|||||||.|||||+||||++|++|||+||+||||||||||||||||||.++
T Consensus         1 eiq~~W~~~~~f~~~~~~~~~k~kf~i~~~pPY~nG~lH~GH~~~~t~~D~~aRy~rm~G~~Vl~p~GwD~~GlPiE~~v   80 (606)
T pfam00133         1 QIYQFWDEQGYFKKSLENGKGKPSFTIHDGPPNATGLLHIGHALNKTLKDIVIRYKRMQGFDVLWVPGWDHHGLPTEQKV   80 (606)
T ss_pred             CHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf             96789875799057633479999589970898978850242668789999999999828997799884561439999999


Q ss_pred             HHH-----CC------------CHHHHHHHHHHHHHHHHHHCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECC
Q ss_conf             980-----99------------9999999999999999998191766469821477359999999999999889634122
Q gi|254780802|r   92 REH-----NV------------HPKMWTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKT  154 (869)
Q Consensus        92 ~e~-----~~------------~~~~~~~~~i~~~k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~  154 (869)
                      +++     +.            .|+.|+.++++.|++||+|||+|+||+|+|.|+||+|++++||+|.+|+++||||||.
T Consensus        81 ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~DW~r~~~T~dp~y~~~~~w~F~~L~~~Gliyr~~  160 (606)
T pfam00133        81 EKKLGIKGKKDRHKLGREKFREKCREWKMEYADEIRSQFKRLGVSGDWDREYFTLDPGLEAAVWRVFVRLHDKGLIYRGK  160 (606)
T ss_pred             HHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             99742115998365799999999999999999999999998291264588725278125499999999999779817751


Q ss_pred             EEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             13321477676778989843853345643223347523343034445443210022554322222100014557675453
Q gi|254780802|r  155 AQVNWDPVEQTVLANEQVINGRGWRSDAPVEQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIR  234 (869)
Q Consensus       155 ~pV~wcp~~~t~la~~Ev~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~i~~~~~~~~~  234 (869)
                      +||+|||.|+||||||||++++.          ..++                                       ..++
T Consensus       161 ~~V~wcp~~~T~La~~Ev~~~d~----------~~~~---------------------------------------~~v~  191 (606)
T pfam00133       161 KPVNWSPALNTALSEAEVEYKDV----------KGPS---------------------------------------IHVA  191 (606)
T ss_pred             EEECCCCCCCEECCCCCEEECCC----------CCCE---------------------------------------EEEE
T ss_conf             55012442541224440210003----------3303---------------------------------------5650


Q ss_pred             CCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCHHHHHCCHHH--HHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             5556777777513653200134443232003302443203454131458--99988653111124555430255323786
Q gi|254780802|r  235 WEIVSNTIDQIEEILVYTTRPETIFGASFIAIAVDHSISEKLSCDNTDI--KEFCDEEKQKGTSLSVLDKTEKKGIYTGI  312 (869)
Q Consensus       235 ~~~~~~~~~~~~~l~~~TtrPeTl~g~~~i~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~G~  312 (869)
                      |++.+   +.+.++++||||||||||+++++++|+++|+......+..+  ...+.................+++.|+|+
T Consensus       192 f~l~~---~~~~~l~i~TTrPeTl~g~~~l~v~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~G~  268 (606)
T pfam00133       192 FPLAD---GKGASLVIWTTTPWTLPGNTAVAVNPEFNYVKIRVTGEYYILAEALLKSLYKKKKEDGEILEDFRGKELIGK  268 (606)
T ss_pred             CCCCC---CCCCEEEEEECCCCCCCCCEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEECCC
T ss_conf             44578---987669999435420036536898888765104438606789999999997403302433313345231277


Q ss_pred             EECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCH-------------
Q ss_conf             1037777741577631123454533322211134672110122103544321016776555422211-------------
Q gi|254780802|r  313 HVKHPLNPNVVIPVYIANFVFMNYGTGAIFGCPFADQRDMDFAKKYGLPIIPIMKRSINHSQDIEEG-------------  379 (869)
Q Consensus       313 ~~~~P~~~~~~ipv~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~k~glpi~~v~~~~~~~~~~~~~~-------------  379 (869)
                      .+.||++++ .+||++++||++++|||+||+|||||++||+++++++||++.+++..+.......+-             
T Consensus       269 ~~~~P~~~~-~ipv~~~~~V~~~~GTG~V~~vPah~~~D~~~~~k~~l~~~~~i~~~g~~~~~~~~~~G~~v~~a~~~ii  347 (606)
T pfam00133       269 KYIHPFVNR-EIPIIADDYVDMEFGTGAVHIAPAHGEDDYEVGKRHNLEFINPVDDDGTYNEEAPEFQGLKRFKARKKIV  347 (606)
T ss_pred             EEECCCCCC-EEEEEECCCCCCCCCCCCEECCCCCCHHHHHHHHHCCCCCEEEECCCCEECCCCCCCCCCEEEECCHHHH
T ss_conf             897887897-5789954641566687713336777779999999839985024489884667651115852560218999


Q ss_pred             HHCCCCCCCC------CCHHH---------------CCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHH---HCCCCCCC
Q ss_conf             2101233445------83000---------------135646654888999974046775202221110---00111221
Q gi|254780802|r  380 KAFSGDGIMI------NSSFL---------------DGMTNTEALQAVMSHLEKQNIKNSPIGKRKINF---RLRDWCIS  435 (869)
Q Consensus       380 ~~~~~~~~~~------~~~~~---------------~g~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~---~l~DW~IS  435 (869)
                      ..+...|.++      ++.++               +.+...+.++.+++.+++..+.+.. ++++...   +++|||||
T Consensus       348 ~~L~~~g~l~~~~~~~~~~p~~~R~~~~vi~~~~~QWFi~~~~~k~~~~~~~~~~~~~P~~-~~~~~~~~l~~l~DW~iS  426 (606)
T pfam00133       348 ELLTEKGLLLKIEPIEHSYPHCWRSGTPIIYRATPQWFVRMKNLAEAALKAVEKVQFVPKW-GEKRYGNWLENIQDWCIS  426 (606)
T ss_pred             HHHHHCCCEEEEEEECCCCCEECCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCHH-HCCHHHEEECCCCCCEEE
T ss_conf             9788689866532201015555478947999602787775599999999864433027501-012033055256563575


Q ss_pred             CCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-CCCC
Q ss_conf             123222223422333468463474200011100100022454210024564211013676443564323456664-3332
Q gi|254780802|r  436 RQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTWKKIFCVKCGSEALRETDTMDTFVDS-SWYY  514 (869)
Q Consensus       436 Rqr~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~dvld~w~dS-~~~~  514 (869)
                      |||+||+|||||||++|+.+.++.+........   ....+...+.+.. ....|+.|++.+.|++||||+|||| +||+
T Consensus       427 RQR~WGtPIPi~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~re~DtmDtwfdSg~~~~  502 (606)
T pfam00133       427 RQRWWGHPIPAWYSKDTGEVYVRGSLKELVAGR---EEEEGIEAWLHRD-AKDLLGKGAGTLEQDEDVLDTWFSSGSWPF  502 (606)
T ss_pred             EECCCCCCCCEEECCCCCCCCCCCHHHHHHHHH---HCCCCCCCCCCCC-HHHHCCCCCCCEEECCEEEECEECCCCCHH
T ss_conf             414678732269837898316750245555443---0466753101212-465535788751567761202111775689


Q ss_pred             CCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             2335556544101356641143344014555443320234555320134787-322320022223553232243323587
Q gi|254780802|r  515 MRYMTPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIGY-IEIDEPFKRLFTQGMVVHETYYQLEGI  593 (869)
Q Consensus       515 ~~~~~~~~~~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~g~-~~~~~pf~~l~~~G~v~~~~~~~~~~~  593 (869)
                      +++..|+.    +++.+++|+|+|+|++|.||.       |+|++.+...+. +..++||+++++||+|++.        
T Consensus       503 ~~~~~p~~----~~~~f~~~~PvD~~i~G~D~~-------r~w~~~~~~~~~~~~~~~Pfk~l~~~G~vld~--------  563 (606)
T pfam00133       503 STLGYPFT----NTPEFKRFFPADMLLEGSDQT-------RGWFYRMIVLGTALTGSAPYKNVLVHGLVRDE--------  563 (606)
T ss_pred             HHHCCCHH----CHHHHHCCCCCCEEECCHHHH-------HHHHHHHHHCCCCCCCCCCCCEEEECCEEECC--------
T ss_conf             88478512----769895388984897767688-------48999999700002799765458876618999--------


Q ss_pred             CCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             00130620221025677754411048970640474210000001222210012346335666553013321111134
Q gi|254780802|r  594 KKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDIIWS  670 (869)
Q Consensus       594 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~~~~~~~~~~d~~~s  670 (869)
                                                       +|+||||||||||+|.++|++||||++|||+++ +++++|++||
T Consensus       564 ---------------------------------~G~KMSKSkGNvv~p~~~i~~yGaD~~Rl~~~~-a~~~~D~~~S  606 (606)
T pfam00133       564 ---------------------------------QGRKMSKSLGNVIDPLDVIDKYGADALRLWLAS-SDYGRDINFS  606 (606)
T ss_pred             ---------------------------------CCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHC-CCCHHCCCCC
T ss_conf             ---------------------------------887888888997898999987492999999975-9922046559


No 17 
>KOG0432 consensus
Probab=100.00  E-value=0  Score=932.34  Aligned_cols=657  Identities=25%  Similarity=0.378  Sum_probs=514.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCCCCC-CCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             8765689998999999998598036767-888838998077897898740047797789999997771898556768814
Q gi|254780802|r    3 TRSYSPQETDSIWQSAWYDSNIFKAENG-KNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWD   81 (869)
Q Consensus         3 ~~~y~~~~iE~kwq~~W~~~~~fe~~~~-~~~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d   81 (869)
                      .+.|+|+.+|..|+.+|++.+.|+++.. ..++.|.+..|||+.+|.||+|||+|.+++|.++||+||+||.|+|.||+|
T Consensus        43 ~~~y~p~~vE~~wy~ww~k~g~fkp~~~~~~~~~f~i~~PPPNVTG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~PG~D  122 (995)
T KOG0432          43 PAAYSPAYVESAWYKWWEKQGFFKPEYGPNPGGVFVIPLPPPNVTGSLHIGHALTVAIQDALARYNRMHGYQVLWVPGTD  122 (995)
T ss_pred             CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCC
T ss_conf             65678613688889889871788865677888853251599976563106578887889999999982597533248866


Q ss_pred             CCCHHHHHHHHHH-----CC------------CHHHHHHHHHHHHHHHHHHCCCEEECCCCEECCCHHHHHHHHHHHHHH
Q ss_conf             0205899999980-----99------------999999999999999999819176646982147735999999999999
Q gi|254780802|r   82 AFGMPAENAAREH-----NV------------HPKMWTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDF  144 (869)
Q Consensus        82 ~~GlPie~~~~e~-----~~------------~~~~~~~~~i~~~k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L  144 (869)
                      +.|+.++..+++.     +.            ++++|.+++...+.+|++|||.|.||+|+++|||+...+.|..+|.+|
T Consensus       123 HAGIATQ~VVEK~l~~~~~~~Rh~lgRe~F~~~vw~Wk~e~g~~I~~Qlk~lGas~DW~re~fTmD~~~s~AV~eAFvrL  202 (995)
T KOG0432         123 HAGIATQVVVEKQLAREGGKTRHDLGREEFLKEVWEWKEEYGGRIYNQLKRLGASLDWDREAFTMDPKLSRAVTEAFVRL  202 (995)
T ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHH
T ss_conf             33524799999999871586321148999999999999885851999999835732014756034778889999999998


Q ss_pred             HHCCCEEECCEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             98896341221332147767677898984385334564322334752334303444544321002255432222210001
Q gi|254780802|r  145 MKHNVIVRKTAQVNWDPVEQTVLANEQVINGRGWRSDAPVEQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNW  224 (869)
Q Consensus       145 ~~kGliyrg~~pV~wcp~~~t~la~~Ev~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~  224 (869)
                      +++|+|||+.+.|||||..+|++||.||++-+-       -...    ++..+.|              .++|..     
T Consensus       203 ~eeglIyR~~rlVNW~~~L~saiSdiEVe~~ei-------~~~t----~l~vpGy--------------d~~VeF-----  252 (995)
T KOG0432         203 HEEGLIYRANRLVNWCPALRSAISDIEVESVEI-------PGRT----LLSVPGY--------------DTKVEF-----  252 (995)
T ss_pred             HHCCCEEECCCEEEECHHHHHHHHHHEECCEEC-------CCCC----EEECCCC--------------CCCEEE-----
T ss_conf             764846733752641366775654540012125-------8873----5734787--------------762353-----


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             45576754535556777777513653200134443232003302443203454131458999886531111245554302
Q gi|254780802|r  225 IGRSEGMEIRWEIVSNTIDQIEEILVYTTRPETIFGASFIAIAVDHSISEKLSCDNTDIKEFCDEEKQKGTSLSVLDKTE  304 (869)
Q Consensus       225 i~~~~~~~~~~~~~~~~~~~~~~l~~~TtrPeTl~g~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (869)
                       |  ....+.+++.+    ....++++|||||||+|++++||+|+.+.++.                             
T Consensus       253 -G--~L~~~aY~v~g----s~~~i~VaTTRpET~lGDvAvAVhP~D~RYk~-----------------------------  296 (995)
T KOG0432         253 -G--VLYSFAYPVEG----SDEEIVVATTRPETILGDVAVAVHPDDDRYKH-----------------------------  296 (995)
T ss_pred             -E--EEEEEEEECCC----CCCEEEEECCCCCCCCCCEEEEECCCCCCCCC-----------------------------
T ss_conf             -2--34577876058----98738973488641113315775787764300-----------------------------


Q ss_pred             CCCCCCCCEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCC
Q ss_conf             55323786103777774157763112345453332221113467211012210354432101677655542221121012
Q gi|254780802|r  305 KKGIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIFGCPFADQRDMDFAKKYGLPIIPIMKRSINHSQDIEEGKAFSG  384 (869)
Q Consensus       305 ~~~~~~G~~~~~P~~~~~~ipv~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~k~glpi~~v~~~~~~~~~~~~~~~~~~~  384 (869)
                          +-|++++||++ ++.+||+.+.+|+|++|||+|...|||++.||++++++|||.++++++.+.....         
T Consensus       297 ----lhGk~~~hP~~-~r~lPiI~D~~Vd~~fGTGaVKITPaHd~nDyEvgkRh~L~~~ni~~~dG~l~~~---------  362 (995)
T KOG0432         297 ----LHGKFVKHPFT-GRKLPIICDIAVDMEFGTGAVKITPAHDPNDYEVGKRHNLEFINIFTDDGLLNNV---------  362 (995)
T ss_pred             ----CCCCEEECCCC-CCCCCEEECCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCEEEECCCCCEECC---------
T ss_conf             ----06754434777-9966566311025445666247367888067888875399812678587853225---------


Q ss_pred             CCCCCCCHHHCCCCHHHHHHHHHHHHHHH-------------------------------------------------CC
Q ss_conf             33445830001356466548889999740-------------------------------------------------46
Q gi|254780802|r  385 DGIMINSSFLDGMTNTEALQAVMSHLEKQ-------------------------------------------------NI  415 (869)
Q Consensus       385 ~~~~~~~~~~~g~~~~~~~~~i~~~l~~~-------------------------------------------------~~  415 (869)
                            .+.+.||.+-+|+++|++.|.+.                                                 .+
T Consensus       363 ------~gef~Gm~RFeAR~kvv~~L~e~gL~~g~~~h~mvlpiCSRsgDVIEpllkpQW~v~c~ema~~A~~av~sG~L  436 (995)
T KOG0432         363 ------CGEFKGMKRFEAREKVVEKLKELGLYVGKENHPMVLPICSRSGDVIEPLLKPQWFVSCKEMAKKALKAVESGKL  436 (995)
T ss_pred             ------CHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCHHEEEHHHHHHHHHHHHHCCCE
T ss_conf             ------41004747888999999999984155316788525233477777336012540013379999999998744975


Q ss_pred             CCCCHHHHHHHH----HCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHH-
Q ss_conf             775202221110----001112211232222234223334684634742000111001000224542100245642110-
Q gi|254780802|r  416 KNSPIGKRKINF----RLRDWCISRQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTWKKIFC-  490 (869)
Q Consensus       416 ~~~~~~~~~~~~----~l~DW~ISRqr~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l~~~~~~~~~~~-  490 (869)
                      ...|...++.-+    +++|||||||.||||.||+|+......          ...++.|...  ...+.+..-..-.+ 
T Consensus       437 ~i~P~~~~k~w~~W~~~i~DWCiSRQLWWGHrIPAy~v~~~~~----------~~ee~~Wvv~--rseeeA~ekaa~k~g  504 (995)
T KOG0432         437 EILPEFHEKEWYRWLENIRDWCISRQLWWGHRIPAYFVNLSDG----------RAEEDYWVVA--RSEEEAREKAAEKFG  504 (995)
T ss_pred             EECCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCEEEEECCCC----------CCCCCEEEEE--CCHHHHHHHHHHHHC
T ss_conf             8775577878999975130212134443045464256202467----------7766616885--889999999999718


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf             13676443564323456664333223355565441013566411433440145554433202345553201347873223
Q gi|254780802|r  491 VKCGSEALRETDTMDTFVDSSWYYMRYMTPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIGYIEID  570 (869)
Q Consensus       491 ~~~~~~~~r~~dvld~w~dS~~~~~~~~~~~~~~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~g~~~~~  570 (869)
                      +.....+.|++||||+||+|++++....++-.    ..+.++.+||.+++-+|.|  |++||.+||.+.-+.-+|    .
T Consensus       505 ~~~~~~L~qDpDVLDTWFSS~L~PfS~lGWP~----~t~d~~~fyP~sllETG~D--ILfFWVaRMvmLg~kLtG----~  574 (995)
T KOG0432         505 PGKEFTLEQDPDVLDTWFSSGLWPFSTLGWPE----ETKDFKNFYPLSLLETGHD--ILFFWVARMVMLGLKLTG----E  574 (995)
T ss_pred             CCCCCEEECCCCHHHHHHHCCCCCCHHCCCCC----CCCCHHHCCCCHHHHCCCH--HHHHHHHHHHHHHHHHCC----C
T ss_conf             85321251484277766641533211048965----5641876298415432752--789999999996555517----7


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCCC----
Q ss_conf             2002222355323224332358700130620221025677754411048970640474210000001222210012----
Q gi|254780802|r  571 EPFKRLFTQGMVVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIK----  646 (869)
Q Consensus       571 ~pf~~l~~~G~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~----  646 (869)
                      -||+++++||||.|.                                         .|+|||||+||||+|.|+|+    
T Consensus       575 lPF~~V~LH~mVRDa-----------------------------------------~GRKMSKSLGNVIDPlDVI~Gisl  613 (995)
T KOG0432         575 LPFKEVLLHGLVRDA-----------------------------------------HGRKMSKSLGNVIDPLDVIDGISL  613 (995)
T ss_pred             CCCHHEEECHHHCCC-----------------------------------------CCCCCCHHHCCCCCHHHHHCCCCH
T ss_conf             773411442121135-----------------------------------------245221100452488887523129


Q ss_pred             --------------------------C-------CCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             --------------------------3-------4633566655301332111113432101145567788999997630
Q gi|254780802|r  647 --------------------------S-------YGADTARLFVLSDSPPDRDIIWSNKGVDSTYQFIQQIWRLIYNAKD  693 (869)
Q Consensus       647 --------------------------~-------yGaD~lRl~~~~~~~~~~d~~~s~~~i~~~~rfl~kl~~l~~~~~~  693 (869)
                                                .       +|.|+|||.|++-...++|++++...+.++++|+||+||...++..
T Consensus       614 e~L~~~L~~gNLdp~Ev~~a~~gq~kdFPnGIpeCGtDALRFaL~s~~~~~~dInLDv~rv~g~r~FcNKlWNa~rF~l~  693 (995)
T KOG0432         614 EKLHAKLLSGNLDPREVEKAKKGQKKDFPNGIPECGTDALRFALCSYTTQGRDINLDVLRVEGYRHFCNKLWNATRFALQ  693 (995)
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999987279998999999877775367887433538999999871256764444189876689999999999999987


Q ss_pred             CCC----CC--------CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-HHHHHHHHHHCCCCCCCCH----
Q ss_conf             246----67--------897569999999999999999988168899999999999-9999999862110002217----
Q gi|254780802|r  694 ELQ----TS--------STKKDISLISKSTKFLERIEENYQNLSFNKAVANIHELV-NVISKPLMEIAKKKSNADR----  756 (869)
Q Consensus       694 ~~~----~~--------~~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai~~i~~f~-n~ls~~y~~~~k~~~~~~~----  756 (869)
                      ...    +.        ....|.||+++++.+++.+++++++|+|..|.++++.|. ++||+-|++..|.-...+.    
T Consensus       694 ~lg~~~~p~~~~~~~~~~~~~d~WIlsrL~~av~~~~~~~~~~~f~~at~a~~~Fwl~~lCDVYlE~~Kp~l~~~~~~~~  773 (995)
T KOG0432         694 RLGENFVPSPTEDLSGNESLVDEWILSRLAEAVEEVNESLEARNFHLATSALYAFWLYDLCDVYLEATKPLLWGDSEALA  773 (995)
T ss_pred             HCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf             43557888822356877410689999999999999985112001677899999999999989999985587628934544


Q ss_pred             ---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC-----CCCEEECCCCC----C-CHHHHHCC
Q ss_conf             ---99999999999999722343899999998289-----98355178866----5-96786037
Q gi|254780802|r  757 ---ISTIRYILEKLIIMMSPMIPHLAEECWQLLGN-----AGLVAQQKWPK----L-DPILEVNT  808 (869)
Q Consensus       757 ---~~~l~~vl~~l~~lLaPi~PhiaEEiw~~Lg~-----~~~i~~~~WP~----~-d~~~~~~~  808 (869)
                         ..+|+.+++.-++||||||||+||||||.|..     ..||+.++||.    + |++++.+.
T Consensus       774 ~~a~~vL~~~ld~gLrll~PfMPFvtEelwqrlP~r~~~~~~si~va~yP~~~~~~~~~e~E~~~  838 (995)
T KOG0432         774 YEARRVLYRCLDNGLRLLHPFMPFITEELWQRLPRRKGSKPASISVSPYPSSNELWRNEELESAF  838 (995)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCEEECCCCCHHCCCCCHHHHHHH
T ss_conf             66788999999988998457440308999985667889998723625886221144788999999


No 18 
>KOG0433 consensus
Probab=100.00  E-value=0  Score=899.02  Aligned_cols=689  Identities=23%  Similarity=0.351  Sum_probs=513.8

Q ss_pred             CCHHHHHHHHHHHHHHCCCCCC-CCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             5689998999999998598036-767888838998077897898740047797789999997771898556768814020
Q gi|254780802|r    6 YSPQETDSIWQSAWYDSNIFKA-ENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFG   84 (869)
Q Consensus         6 y~~~~iE~kwq~~W~~~~~fe~-~~~~~~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~G   84 (869)
                      .|...-|++.++-|....+++. ..+.+++.|.++|    |||.||||||+|+++|||+.||+.|+|++|+|+|||||||
T Consensus        30 ~n~~~r~~q~~k~~~~~~~~~~~l~~~~~~~F~L~d----anG~lhlghAlnKILkdiinr~~l~~g~~v~yvPGWDCHG  105 (937)
T KOG0433          30 FNSTGRIGQVIEVIQPPEILSSQLSDQQRVEFELKD----ANGNLHLGHALNKILKDIINRILLAQGKSALYVPGWDCHG  105 (937)
T ss_pred             CCCCCCHHHHHHHHCCHHHHHHHHHHCCCCEEEEEC----CCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCC
T ss_conf             453233788998835627788887642687089864----8898016778989999999999997487442578987688


Q ss_pred             HHHH-HHHHHH-------------CCCHHHHHHHHHHHHHHHHHHCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCE
Q ss_conf             5899-999980-------------99999999999999999999819176646982147735999999999999988963
Q gi|254780802|r   85 MPAE-NAAREH-------------NVHPKMWTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVI  150 (869)
Q Consensus        85 lPie-~~~~e~-------------~~~~~~~~~~~i~~~k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGli  150 (869)
                      |||| -+|...             +...+.+|.+.|++|++.|+|||++.||.++|.|+||+|+..+..+|.+|++||||
T Consensus       106 LPIEs~Kals~l~~~~~~~spleiR~kAr~fA~~AIk~Q~e~F~r~gv~aDW~npY~T~~~~yeaaQL~iF~~lyekgLv  185 (937)
T KOG0433         106 LPIESTKALSSLTESEGSRTPLEIRAKARIFADEAIKKQMEAFRRWGVTADWENPYVTKSPSYEAAQLDIFAKLYEKGLV  185 (937)
T ss_pred             CCHHHHHHHHHCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCEEECCHHHHHHHHHHHHHHHHCCCE
T ss_conf             73687787553212114678189999999999999999999988750110578830623807789999999999866613


Q ss_pred             EECCEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             41221332147767677898984385334564322334752334303444544321002255432222210001455767
Q gi|254780802|r  151 VRKTAQVNWDPVEQTVLANEQVINGRGWRSDAPVEQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEG  230 (869)
Q Consensus       151 yrg~~pV~wcp~~~t~la~~Ev~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~i~~~~~  230 (869)
                      ||+.+||+|||..+||||+.|+||.+.+.+.         .+|++++-.                          +.+..
T Consensus       186 yR~~KPVyWSpSSRTALAEaELEYn~nH~S~---------S~Y~~F~L~--------------------------~~S~~  230 (937)
T KOG0433         186 YRSFKPVYWSPSSRTALAESELEYNDNHQST---------SAYFRFKLI--------------------------NFSSS  230 (937)
T ss_pred             ECCCCCCEECCCCHHHHHHHHCCCCCCCCCE---------EEEEEEECC--------------------------CCCCC
T ss_conf             3057760136753125556431578677551---------489998636--------------------------77622


Q ss_pred             CCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCHHHHHCCH--HH----HHHHHHHHH-HHHHHHHHHHH
Q ss_conf             545355567777775136532001344432320033024432034541314--58----999886531-11124555430
Q gi|254780802|r  231 MEIRWEIVSNTIDQIEEILVYTTRPETIFGASFIAIAVDHSISEKLSCDNT--DI----KEFCDEEKQ-KGTSLSVLDKT  303 (869)
Q Consensus       231 ~~~~~~~~~~~~~~~~~l~~~TtrPeTl~g~~~i~v~~~~~~~~~~~~~~~--~~----~~~~~~~~~-~~~~~~~~~~~  303 (869)
                           +..........|+++|||+||||+.+.++.++++..|.-.....+.  .+    ...+.+... .+.+. .+.+.
T Consensus       231 -----~~~~~~~~~~iyaLVWTTTPWTlPsN~Ai~~n~~~~Yslv~~~~~~~~~~ylvas~L~~~fe~~~~~k~-~i~~t  304 (937)
T KOG0433         231 -----AHSEDSKIPQIYALVWTTTPWTLPSNNAISVNSAIQYSLVQFDNNPTSTFYLVASKLLEEFEKSSDRKC-KIVGT  304 (937)
T ss_pred             -----CCCCCCCCCCEEEEEEECCCCCCCCCCEEEECCCCCEEEEEECCCCCCEEEEECCCHHHHHHHHCCCCE-EEEEE
T ss_conf             -----125777667479999847875454664135323340589992367766599970010666653138643-45300


Q ss_pred             CCCCCCCCCEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCC---CHH
Q ss_conf             25532378610377777415776311234545333222111346721101221035443210167765554222---112
Q gi|254780802|r  304 EKKGIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIFGCPFADQRDMDFAKKYGLPIIPIMKRSINHSQDIE---EGK  380 (869)
Q Consensus       304 ~~~~~~~G~~~~~P~~~~~~ipv~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~k~glpi~~v~~~~~~~~~~~~---~~~  380 (869)
                      ..+..+.|..|.||+.++...|++.|+||+++.|||+||+|||||++||.++.++|||+..++|+.|.++....   .+.
T Consensus       305 ~~g~~L~~~~Y~hpl~~~~~~P~l~g~hVT~~~GTGLVHTAPaHG~eDYlv~l~~gl~~~s~VD~~G~yT~ea~~~l~Gk  384 (937)
T KOG0433         305 VKGANLIGRRYKHPLHNELGLPILEGPHVTDTVGTGLVHTAPAHGFEDYLVAISKGLRVESFVDSRGCYTREAGHDLDGK  384 (937)
T ss_pred             CCHHHCCCCEECCCCCCCCCCCCCCCCCEECCCCCCEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCC
T ss_conf             36223157623686765568864246633047566204417877748777776439976665577771340146412561


Q ss_pred             HCCCC----------------CCCCCCHHHCCCCHH---------------HHHHHHHHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf             10123----------------344583000135646---------------65488899997404677520222111000
Q gi|254780802|r  381 AFSGD----------------GIMINSSFLDGMTNT---------------EALQAVMSHLEKQNIKNSPIGKRKINFRL  429 (869)
Q Consensus       381 ~~~~~----------------~~~~~~~~~~g~~~~---------------~~~~~i~~~l~~~~~~~~~~~~~~~~~~l  429 (869)
                      ...++                ...+|+++++|++.+               +.+..+++.+....+.+.. +..+..-.+
T Consensus       385 ~VL~eG~k~vl~~l~~~iv~~sky~HsYPYDWRTKKPvIiRAseQWFi~~e~~k~~A~~al~~Vk~~P~~-~~~rl~~~~  463 (937)
T KOG0433         385 EVLGEGQKIVLRLLNHDIVHVSKYVHSYPYDWRTKKPVIIRASEQWFIDVEEIKKRASMALDDVKVAPGD-SDLRLKQLV  463 (937)
T ss_pred             HHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCHHHEEEHHHHHHHHHHHHHHCEECCCC-HHHHHHHHH
T ss_conf             1232630769999865455201023258865455896599506155024775506899988512437863-088999997


Q ss_pred             ---CCCCCCCCCCCCCCCCCCCCCCCCCEECCCCC------CCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC
Q ss_conf             ---11122112322222342233346846347420------001110010002245421002456421101367644356
Q gi|254780802|r  430 ---RDWCISRQRSWGCPIPVIHCQKCGIVELPKED------LPVQLPEDLDFTLPGNPLENHPTWKKIFCVKCGSEALRE  500 (869)
Q Consensus       430 ---~DW~ISRqr~WG~piPv~~~~~~~~~~~~~~~------l~v~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~  500 (869)
                         .+|||||||.||+|||++|....+.+.....-      +..+-..|.||....+.+  .|.+.--..+....++.|.
T Consensus       464 ~~Rp~WCISRQR~WGvPIP~ly~k~~~~~l~ns~~~~h~~~~~eqeGsD~Ww~~~~eel--lpe~~~~e~~d~a~ey~kg  541 (937)
T KOG0433         464 TTRPSWCISRQRVWGVPIPALYDKNGGSYLSNSLIEWHAKLTREQEGSDVWWEIDVEEL--LPEEEVREIPDIASEYKKG  541 (937)
T ss_pred             CCCCCCEEEECCCCCCCCEEEEECCCCCEEEHHHHHHHHHHHHHHHCCCCEEECCHHHH--CCHHHHCCCCHHHHHHCCC
T ss_conf             17974055321015885205785489835125899999999998718763276785671--7076630131168874368


Q ss_pred             CCCCCCCCCCC--CCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCC-CCCCCCCCCCC
Q ss_conf             43234566643--3322335556544101356641143344014555443320234555320134787-32232002222
Q gi|254780802|r  501 TDTMDTFVDSS--WYYMRYMTPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIGY-IEIDEPFKRLF  577 (869)
Q Consensus       501 ~dvld~w~dS~--~~~~~~~~~~~~~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~g~-~~~~~pf~~l~  577 (869)
                      +|+||+|||||  |....        +.     +.-.++|+++||.||-       |+|+++++-+.. .....||++++
T Consensus       542 tDimDVWFDSGssWs~v~--------~~-----~~~~~aDv~LEG~DQ~-------rGWFQSsLLTsvA~q~kAPYk~vi  601 (937)
T KOG0433         542 TDIMDVWFDSGSSWSAVL--------DN-----EREHVADVYLEGVDQF-------RGWFQSSLLTSVAVQNKAPYKKVI  601 (937)
T ss_pred             CCEEEEEECCCCCCEEEC--------CC-----CCCCCEEEEEECCHHC-------CHHHHHHHHHHHHHHCCCCCHHEE
T ss_conf             831666762888510004--------78-----8875000688441201-------237899999999872468723215


Q ss_pred             CCCCCCCCCCCCCCCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCCCC------CCHH
Q ss_conf             3553232243323587001306202210256777544110489706404742100000012222100123------4633
Q gi|254780802|r  578 TQGMVVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKS------YGAD  651 (869)
Q Consensus       578 ~~G~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~~------yGaD  651 (869)
                      .||+++||                                         +|+|||||+||||+|..+++.      ||||
T Consensus       602 vHGFtlDE-----------------------------------------~G~KMSKSlGNVidP~~vi~G~~k~payGaD  640 (937)
T KOG0433         602 VHGFTLDE-----------------------------------------NGNKMSKSLGNVVDPTMVTDGSLKQPAYGAD  640 (937)
T ss_pred             EEEEEECC-----------------------------------------CCCCHHHCCCCCCCHHHHHCCCCCCCCCCCC
T ss_conf             62037667-----------------------------------------7542100226757889984775668875641


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCHHH---HHHHHHHHHHHHHHHHCCCCCCC--------CHHHHHHHHHHHHHHHHHHHH
Q ss_conf             5666553013321111134321011---45567788999997630246678--------975699999999999999999
Q gi|254780802|r  652 TARLFVLSDSPPDRDIIWSNKGVDS---TYQFIQQIWRLIYNAKDELQTSS--------TKKDISLISKSTKFLERIEEN  720 (869)
Q Consensus       652 ~lRl~~~~~~~~~~d~~~s~~~i~~---~~rfl~kl~~l~~~~~~~~~~~~--------~~~D~~ils~~~~~i~~v~~~  720 (869)
                      +||||++ .+....|+....+.+..   ..+.++.+.|++.++...+++..        ..+|+.+|..++.+.+++++.
T Consensus       641 ~LR~WVA-~s~~t~d~~iGp~il~qv~e~l~K~R~T~RfllGnl~d~~~~~~~~p~~dl~~iDqy~L~ql~~~~~~i~el  719 (937)
T KOG0433         641 GLRFWVA-GSENTGESKIGPKILDQVDEKLIKFRNTFRFLLGNLQDFDGKQVKFPLKDLRYIDQYMLQQLDAIVKRIIEL  719 (937)
T ss_pred             CEEEEEE-CCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             0013442-355557510288999999999999975779885041124776551001032232499999999999999999


Q ss_pred             HHHCCHHHHHHHHHHHH-HHHHHHHHHHCCCCCCCC---------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC-CC
Q ss_conf             88168899999999999-999999986211000221---------79999999999999972234389999999828-99
Q gi|254780802|r  721 YQNLSFNKAVANIHELV-NVISKPLMEIAKKKSNAD---------RISTIRYILEKLIIMMSPMIPHLAEECWQLLG-NA  789 (869)
Q Consensus       721 ~e~~~f~~ai~~i~~f~-n~ls~~y~~~~k~~~~~~---------~~~~l~~vl~~l~~lLaPi~PhiaEEiw~~Lg-~~  789 (869)
                      |++|+|+++++.+..|+ ++||++|.++.|||.+++         .+.+|.+++..+++.++||+||++||+||.|. +.
T Consensus       720 Y~~Y~f~kVv~~lq~F~~~~lSa~YfdivKDRLY~~~~~s~~rrs~QttL~h~l~~l~~~iaPIlP~LaeEvwq~lP~~~  799 (937)
T KOG0433         720 YNDYKFRKVVNDLQQFLQRNLSAFYFDIVKDRLYCDKVGSESRRSAQTTLHHLLHNLAHIISPILPHLAEEVWQHLPGSH  799 (937)
T ss_pred             HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCC
T ss_conf             98515899999999999977667899987665305888868888999999999999999973431788999997487878


Q ss_pred             CCEEECCCCCCCHHH
Q ss_conf             835517886659678
Q gi|254780802|r  790 GLVAQQKWPKLDPIL  804 (869)
Q Consensus       790 ~~i~~~~WP~~d~~~  804 (869)
                      +-+....||..++.+
T Consensus       800 ~~~fr~k~~~l~s~~  814 (937)
T KOG0433         800 EKIFRLKWEDLHSGL  814 (937)
T ss_pred             CCCCCCCCCCCCHHH
T ss_conf             865224765246343


No 19 
>KOG0434 consensus
Probab=100.00  E-value=0  Score=885.43  Aligned_cols=689  Identities=20%  Similarity=0.308  Sum_probs=525.3

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCCC--CCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             765689998999999998598036--767888838998077897898740047797789999997771898556768814
Q gi|254780802|r    4 RSYSPQETDSIWQSAWYDSNIFKA--ENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWD   81 (869)
Q Consensus         4 ~~y~~~~iE~kwq~~W~~~~~fe~--~~~~~~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d   81 (869)
                      +++||.+-|+|+.++|.+.+.|+.  +-.+++|+|.|.||||+|+|.+|.||.++-||||++.||..|+|+.|.+++|||
T Consensus         6 ~n~nfp~eEEkvle~W~e~~aF~~slk~sk~rp~ftFyDGPPFATGlPHyGHiLa~TIKDiVtRya~~~G~hVeRRFGWD   85 (1070)
T KOG0434           6 ENFNFPKEEEKVLEFWREIDAFHTSLKLSKGRPKFTFYDGPPFATGLPHYGHILASTIKDIVTRYATQTGHHVERRFGWD   85 (1070)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCC
T ss_conf             45787445889999998753899999860799842613699655689862144544687777777430463102201665


Q ss_pred             CCCHHHHHHH-----------------HHHCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCEECCCHHHHHHHHHHHHHH
Q ss_conf             0205899999-----------------98099999999999999999999819176646982147735999999999999
Q gi|254780802|r   82 AFGMPAENAA-----------------REHNVHPKMWTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDF  144 (869)
Q Consensus        82 ~~GlPie~~~-----------------~e~~~~~~~~~~~~i~~~k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L  144 (869)
                      |||||+|...                 .+.+.+||..+..+..+|+..+.|+|.|+|+++.|.||+|.|+++|||+|.+|
T Consensus        86 ~HGlPVE~eIDKkLgI~g~~dV~kmGI~kYN~ECR~IVmrYssEWe~tv~RlGRWidF~ndYkTmyp~FMESvWwvFkeL  165 (1070)
T KOG0434          86 THGLPVEYEIDKKLGITGRDDVMKMGIDKYNNECRKIVMRYSSEWEKTVERLGRWIDFDNDYKTLYPSFMESVWWVFKEL  165 (1070)
T ss_pred             CCCCCCCEEECHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCEECHHHHHHHHHHHHHH
T ss_conf             68885010000220888789999970776758988999988788999998631404326885121678999999999999


Q ss_pred             HHCCCEEECCEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             98896341221332147767677898984385334564322334752334303444544321002255432222210001
Q gi|254780802|r  145 MKHNVIVRKTAQVNWDPVEQTVLANEQVINGRGWRSDAPVEQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNW  224 (869)
Q Consensus       145 ~~kGliyrg~~pV~wcp~~~t~la~~Ev~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~  224 (869)
                      ++||++|||.++++||+.|.||||+.|-.+.+...        ..|                                  
T Consensus       166 ~~kglVYRG~kVMP~STac~TPLSNFEa~QNYKdV--------~DP----------------------------------  203 (1070)
T KOG0434         166 HEKGLVYRGFKVMPYSTACTTPLSNFEAQQNYKDV--------PDP----------------------------------  203 (1070)
T ss_pred             HHCCCEECCEEEECCCCCCCCCCCCHHCCCCCCCC--------CCC----------------------------------
T ss_conf             86675531136310333358855000003676568--------997----------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCHHHHH---CCHHHHH-HHHHH-HH-HHHHHH
Q ss_conf             455767545355567777775136532001344432320033024432034541---3145899-98865-31-111245
Q gi|254780802|r  225 IGRSEGMEIRWEIVSNTIDQIEEILVYTTRPETIFGASFIAIAVDHSISEKLSC---DNTDIKE-FCDEE-KQ-KGTSLS  298 (869)
Q Consensus       225 i~~~~~~~~~~~~~~~~~~~~~~l~~~TtrPeTl~g~~~i~v~~~~~~~~~~~~---~~~~~~~-~~~~~-~~-~~~~~~  298 (869)
                           ...+.|++..   ++...+++|||+||||+++-+++|||+..|+.....   ....+-+ ...+. +. +....+
T Consensus       204 -----av~v~F~li~---~~~~slvAWTTTPWTLPSNlal~Vnp~~~Yvki~dk~~~k~yil~esrl~~l~k~~~~~~~e  275 (1070)
T KOG0434         204 -----AVFVAFPLIG---DPNVSLVAWTTTPWTLPSNLALCVNPDFQYVKIKDKTTGKKYILMESRLGELYKNPKNDNYE  275 (1070)
T ss_pred             -----EEEEEEECCC---CCCEEEEEEECCCCCCCCCEEEEECCCEEEEEEEECCCCEEEEEEHHHHHHHHCCCCCCCHH
T ss_conf             -----0799731268---86112798745875576660478768727999984367758997298777773586432079


Q ss_pred             HHHHHCCCCCCCCCEECCCCC------CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCC------CCCCCC
Q ss_conf             554302553237861037777------74157763112345453332221113467211012210354------432101
Q gi|254780802|r  299 VLDKTEKKGIYTGIHVKHPLN------PNVVIPVYIANFVFMNYGTGAIFGCPFADQRDMDFAKKYGL------PIIPIM  366 (869)
Q Consensus       299 ~~~~~~~~~~~~G~~~~~P~~------~~~~ipv~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~k~gl------pi~~v~  366 (869)
                       +..+..+..|.|++|..++.      .+....|+.++||+.+.|||+||+||++|+.||+++.+.|+      |.++ +
T Consensus       276 -iler~~G~~L~g~kYeplF~YF~~~~~~~aFrvl~d~yVt~~sGTGiVH~AP~FGe~Dy~~c~~~giI~~d~~~~cp-V  353 (1070)
T KOG0434         276 -ILERFQGAALVGLKYEPLFPYFAETFEEGAFRVLSDDYVTEDSGTGIVHQAPAFGEEDYRACVANGIIRKDSLPPCP-V  353 (1070)
T ss_pred             -HHHHCCCCCCCCCCCCCCCHHHHHHHCCCCEEEECCCCEECCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCC-C
T ss_conf             -99862653135864576656899873157369961572742788613650776570548999973951377878886-1


Q ss_pred             CCCCCCCCCCCCH-HHC------------------CCCCCCCCCHHHCCCCHHHHH-HHH----------HHHHHHHCCC
Q ss_conf             6776555422211-210------------------123344583000135646654-888----------9999740467
Q gi|254780802|r  367 KRSINHSQDIEEG-KAF------------------SGDGIMINSSFLDGMTNTEAL-QAV----------MSHLEKQNIK  416 (869)
Q Consensus       367 ~~~~~~~~~~~~~-~~~------------------~~~~~~~~~~~~~g~~~~~~~-~~i----------~~~l~~~~~~  416 (869)
                      |+.+.++.++..- +.+                  .....+.|+.+++|++.+..+ +++          ...+-+++-.
T Consensus       354 De~G~~Tsev~dfaG~YVKDaDK~Ii~~lk~~g~lv~~~~i~HsYPFCWRSDTPLiYraVPsWFVrVk~~v~~ll~nn~~  433 (1070)
T KOG0434         354 DESGLFTSEVTDFAGQYVKDADKLIIRSLKASGRLVKASQITHSYPFCWRSDTPLIYRAVPSWFVRVKNIVDQLLRNNMK  433 (1070)
T ss_pred             CCCCCCCCCCCCCCCEEECCCHHHHHHHHHHCCCEEEEEEEEECCCCEECCCCHHHHHHCCHHHHHHHHHHHHHHHCCCC
T ss_conf             66776310054225524221439999999852746655656644673355897078763427651199779999851554


Q ss_pred             CCCH----HHHHH-HH--HCCCCCCCCCCCCCCCCCCCCCCCCCCEECCC--CCCCHHHHCCCCCCCCCCCCCH-HHHHH
Q ss_conf             7520----22211-10--00111221123222223422333468463474--2000111001000224542100-24564
Q gi|254780802|r  417 NSPI----GKRKI-NF--RLRDWCISRQRSWGCPIPVIHCQKCGIVELPK--EDLPVQLPEDLDFTLPGNPLEN-HPTWK  486 (869)
Q Consensus       417 ~~~~----~~~~~-~~--~l~DW~ISRqr~WG~piPv~~~~~~~~~~~~~--~~l~v~~~~d~~~~~~~~~l~~-~~~~~  486 (869)
                      ..|.    ..++. +|  .+|||.|||+||||+|||+|..++...+....  .+|....  ++-    .+.++. ..+. 
T Consensus       434 t~WVP~~ikeKRF~NWL~nARDW~iSRnR~WGTPIpLWVSdD~eevVcigSi~eLEeLS--G~k----ItDlHRe~iD~-  506 (1070)
T KOG0434         434 THWVPQNIKEKRFANWLKNARDWNISRNRYWGTPIPLWVSDDYEEVVCIGSIKELEELS--GVK----ITDLHRESIDH-  506 (1070)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCEEEEECCHHHHHHHC--CCC----CHHHHHHHCCC-
T ss_conf             43477055677888887530312110035558885547736873579953288898840--973----11444541475-


Q ss_pred             HHHHCCC--CCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf             2110136--76443564323456664-33322335556544101356641143344014555443320234555320134
Q gi|254780802|r  487 KIFCVKC--GSEALRETDTMDTFVDS-SWYYMRYMTPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKK  563 (869)
Q Consensus       487 ~~~~~~~--~~~~~r~~dvld~w~dS-~~~~~~~~~~~~~~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~  563 (869)
                       +..++.  .+.++|..+|+|+||.| |++|++-..|..    |++.++.-||+|++-||.||+       |+|+|.|+.
T Consensus       507 -itIps~~gkg~l~Rv~eVfDCWFESGSMPYAq~HyPFe----nk~~fe~~fPadFIaEGlDQT-------RGWFYTL~V  574 (1070)
T KOG0434         507 -ITIPSKKGKGVLHRVSEVFDCWFESGSMPYAQRHYPFE----NKEEFEENFPADFIAEGLDQT-------RGWFYTLLV  574 (1070)
T ss_pred             -EECCCCCCCCCEEHHHHHHHHHHCCCCCCCHHHCCCCC----CHHHHHHCCCHHHHHHCCCCC-------CCHHHHHHH
T ss_conf             -65046788762121666765643158876202118853----367776449667665132002-------204557999


Q ss_pred             CCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCC
Q ss_conf             787322-3200222235532322433235870013062022102567775441104897064047421000000122221
Q gi|254780802|r  564 IGYIEI-DEPFKRLFTQGMVVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPM  642 (869)
Q Consensus       564 ~g~~~~-~~pf~~l~~~G~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~  642 (869)
                      +++..+ ..||++++++|+|+.+                                         +|+|||||+.|+.+|.
T Consensus       575 lsT~LF~kppfkNvIvnGlVLAe-----------------------------------------DG~KMSKrlkNYPdP~  613 (1070)
T KOG0434         575 LSTALFGKPPFKNVIVNGLVLAE-----------------------------------------DGKKMSKRLKNYPDPS  613 (1070)
T ss_pred             HHHHHCCCCCCHHEEEEEEEEEC-----------------------------------------CCHHHHHHHHCCCCHH
T ss_conf             99987179852221670168812-----------------------------------------1077766531598878


Q ss_pred             CCCCCCCHHHHHHHHHHCCCC--CCCCCCCCCCHHHHHHHH-HHHHHHHH---HHHCC-------------CCCCCCHHH
Q ss_conf             001234633566655301332--111113432101145567-78899999---76302-------------466789756
Q gi|254780802|r  643 KVIKSYGADTARLFVLSDSPP--DRDIIWSNKGVDSTYQFI-QQIWRLIY---NAKDE-------------LQTSSTKKD  703 (869)
Q Consensus       643 ~~i~~yGaD~lRl~~~~~~~~--~~d~~~s~~~i~~~~rfl-~kl~~l~~---~~~~~-------------~~~~~~~~D  703 (869)
                      .+|++||||+||||+. .+|.  .+.+.|+++|+.++-+-+ ..-||-..   .+...             ...+.+..|
T Consensus       614 ~iinkYGADalRlYLI-nSPVvraE~LkFkeeGVrevvk~v~lPW~NsyrF~~qn~~~~~~~~g~~f~~~~~~~S~NvmD  692 (1070)
T KOG0434         614 LIINKYGADALRLYLI-NSPVVRAENLKFKEEGVREVVKDVLLPWYNSYRFLVQNAALLKKETGKDFVFDDSVTSSNVMD  692 (1070)
T ss_pred             HHHHHHCCHHEEEEEE-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
T ss_conf             9887626202256651-584100433444211189998766125567789999888875024587666333346620578


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC--------HHHHHHHHHHHHHHHHCCCH
Q ss_conf             9999999999999999988168899999999999999999986211000221--------79999999999999972234
Q gi|254780802|r  704 ISLISKSTKFLERIEENYQNLSFNKAVANIHELVNVISKPLMEIAKKKSNAD--------RISTIRYILEKLIIMMSPMI  775 (869)
Q Consensus       704 ~~ils~~~~~i~~v~~~~e~~~f~~ai~~i~~f~n~ls~~y~~~~k~~~~~~--------~~~~l~~vl~~l~~lLaPi~  775 (869)
                      +||++.++.++.-+++.|.+|++.+++..+..|++.|++||++..|+|..++        ++++|..+|..++++|+||+
T Consensus       693 rWI~a~~qslv~fv~~eM~~YrLytVvp~llkfiD~LTNwYiR~nRrrlkGe~G~~d~~~AL~~Lf~vL~t~~r~MaPfT  772 (1070)
T KOG0434         693 RWILASTQSLVGFVREEMDQYRLYTVVPRLLKFIDELTNWYIRFNRRRLKGENGEHDCHNALNVLFEVLFTLVRVMAPFT  772 (1070)
T ss_pred             HHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHEEHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             99999999999999998875032415888999998754663012055525777617889999999999999999975885


Q ss_pred             HHHHHHHHHHCC----------CCCCEEECCCCCCCHHHH
Q ss_conf             389999999828----------998355178866596786
Q gi|254780802|r  776 PHLAEECWQLLG----------NAGLVAQQKWPKLDPILE  805 (869)
Q Consensus       776 PhiaEEiw~~Lg----------~~~~i~~~~WP~~d~~~~  805 (869)
                      ||+||.+||.|.          ...|||...+|.+++.+.
T Consensus       773 PF~tE~iyq~Lk~~~~~~~~~~~~~SVHfl~~P~~~~~~~  812 (1070)
T KOG0434         773 PFFTEYIYQNLKKYIPIDKNEKSERSVHFLSYPTPKEELI  812 (1070)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHHHC
T ss_conf             4888999998873078533477654267763587325425


No 20 
>KOG0437 consensus
Probab=100.00  E-value=0  Score=738.74  Aligned_cols=704  Identities=21%  Similarity=0.312  Sum_probs=501.9

Q ss_pred             CHHHHHHHHHHHHHHCCCCCCCC----CCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             68999899999999859803676----78888389980778978987400477977899999977718985567688140
Q gi|254780802|r    7 SPQETDSIWQSAWYDSNIFKAEN----GKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDA   82 (869)
Q Consensus         7 ~~~~iE~kwq~~W~~~~~fe~~~----~~~~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~   82 (869)
                      ...+||+++|+.|+++++||++.    +.+++|||++.||||+||.||+||+++-+..|+.+-|+||+|+|||||+||||
T Consensus        13 ~L~eiEk~~q~~W~~e~~fevda~~el~~~~~Kff~tfpyPYMNG~LHlGH~FslSK~eFa~~y~rL~Gk~vLfPfgFHC   92 (1080)
T KOG0437          13 SLLEIEKKYQKKWDTEKVFEVDAPNELQKSKPKFFVTFPYPYMNGRLHLGHAFSLSKVEFASGYERLQGKNVLFPFGFHC   92 (1080)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCEEEECCCCCCCCCEECCCEEEHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf             99999999987640211100357021055667516843650217602123010023548888999845854774033354


Q ss_pred             CCHHHHHHHH---------------------------------------------------------------------H
Q ss_conf             2058999999---------------------------------------------------------------------8
Q gi|254780802|r   83 FGMPAENAAR---------------------------------------------------------------------E   93 (869)
Q Consensus        83 ~GlPie~~~~---------------------------------------------------------------------e   93 (869)
                      ||+||-..|.                                                                     .
T Consensus        93 TGMPI~A~AdKLkrEie~fG~ppdf~~e~eeEv~eev~~~~~~~~~k~kgKKsk~aaK~g~~kYQw~IM~slGl~deEI~  172 (1080)
T KOG0437          93 TGMPIKASADKLKREIELFGCPPDFPEEEEEEVEEEVKTEDAIEDVKFKGKKSKAAAKTGGQKYQWEIMESLGLPDEEIK  172 (1080)
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCHHHHH
T ss_conf             79701775799999999738999981443145652156620112310035205777760464026999998099988813


Q ss_pred             HCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCEECCC--HHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCHHH
Q ss_conf             0999999999999999999998191766469821477--35999999999999988963412213321477676778989
Q gi|254780802|r   94 HNVHPKMWTYQNIKVMRKQLQSIGLSIDWSKDFATCD--VDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQ  171 (869)
Q Consensus        94 ~~~~~~~~~~~~i~~~k~~~~~lG~~~DW~r~y~T~d--~~y~~~v~w~f~~L~~kGliyrg~~pV~wcp~~~t~la~~E  171 (869)
                      ++.+|..|..+|.--..++++|+|+-|||||+|.|+|  |-|..||.|||.+|++.|.|..|+|-..|||.+++||.|||
T Consensus       173 ~F~d~~~WL~yFPpLc~~dlk~~gl~iDWRRSFITTDvNpYyDsFVRWQ~n~L~~~gkI~fgkRyTIyspkDgQpCmDHD  252 (1080)
T KOG0437         173 KFADPKHWLYYFPPLCERDLKRFGLGIDWRRSFITTDVNPYYDSFVRWQFNKLKEAGKIKFGKRYTIYSPKDGQPCMDHD  252 (1080)
T ss_pred             CCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCC
T ss_conf             16671378884883778999984788642330130566545788999999988860785547603663678898553443


Q ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf             84385334564322334752334303444544321002255432222210001455767545355567777775136532
Q gi|254780802|r  172 VINGRGWRSDAPVEQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIRWEIVSNTIDQIEEILVY  251 (869)
Q Consensus       172 v~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~  251 (869)
                      +..||++.   |.+..-+     |++           .+...|                     ...++..+...+++++
T Consensus       253 R~sGEgV~---Pqeytli-----Kle-----------~le~~p---------------------~~l~~~~~~~v~lvAa  292 (1080)
T KOG0437         253 RASGEGVG---PQEYTLI-----KLE-----------VLEPFP---------------------KALSSLKDLRVYLVAA  292 (1080)
T ss_pred             CCCCCCCC---CCEEEEE-----EEE-----------ECCCCH---------------------HHCCCCCCCEEEEEEH
T ss_conf             12388878---6347899-----998-----------414633---------------------3315533320365410


Q ss_pred             EECCCCCCCCCEEEEECCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHH---------HHHCCCCCCCCCEECCCCCCCE
Q ss_conf             0013444323200330244320345413145899988653111124555---------4302553237861037777741
Q gi|254780802|r  252 TTRPETIFGASFIAIAVDHSISEKLSCDNTDIKEFCDEEKQKGTSLSVL---------DKTEKKGIYTGIHVKHPLNPNV  322 (869)
Q Consensus       252 TtrPeTl~g~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~G~~~~~P~~~~~  322 (869)
                      |+|||||||+||++|.|+-+|+..-...+.++. ++.+........+.+         ..+..+.+++|.....|++...
T Consensus       293 TLRpetmyGQTnc~V~p~~~y~~fe~~~~~e~f-i~t~raa~NmsyQ~~tk~~g~~~~~~~i~G~~~iGa~l~aPlsv~~  371 (1080)
T KOG0437         293 TLRPETMYGQTNCYVGPDIKYGGFEACNETEVF-IATERAARNMSYQKLTKERGVVSCLVTITGYDLIGAPLSAPLSVYE  371 (1080)
T ss_pred             HCCCCCCCCCCCEEECCCCCEEEEEECCCCEEE-EEEHHHHHHCCHHHCCCCCCCCCCEEEECCHHHCCCCCCCCCHHHH
T ss_conf             127753357642388688537768833774278-8606877520034314557865511443343221774468500211


Q ss_pred             EEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHH----C---CCC-------CCCCCCCCCCCC---CCCCC--------
Q ss_conf             5776311234545333222111346721101221----0---354-------432101677655---54222--------
Q gi|254780802|r  323 VIPVYIANFVFMNYGTGAIFGCPFADQRDMDFAK----K---YGL-------PIIPIMKRSINH---SQDIE--------  377 (869)
Q Consensus       323 ~ipv~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~----k---~gl-------pi~~v~~~~~~~---~~~~~--------  377 (869)
                      .+.++|+.-|..+.|||+|.|||+.+|+||...+    |   |||       +++|++.-.+..   +..+.        
T Consensus       372 ~vy~LPMlTi~~~KGTGvVtsVpsdsPDDf~al~dL~kK~~lYg~~~ew~~~E~vPii~~~~fGdl~ae~vc~~lKiqs~  451 (1080)
T KOG0437         372 RVYALPMLTILATKGTGVVTSVPSDSPDDFAALQDLKKKPELYGLKPEWVLFEIVPIIRIPGFGDLAAEVVCDELKIQSP  451 (1080)
T ss_pred             EEEECCCEEEECCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCHHHCCCCCCCEEECCCCCHHHHHHHHHHHHCCCC
T ss_conf             01422300255057750478478998025677776641520037780230244520352366331669999998730581


Q ss_pred             -------CHHHCC-----CCCCCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             -------112101-----23344583000135646654888999974046775202221110001112211232222234
Q gi|254780802|r  378 -------EGKAFS-----GDGIMINSSFLDGMTNTEALQAVMSHLEKQNIKNSPIGKRKINFRLRDWCISRQRSWGCPIP  445 (869)
Q Consensus       378 -------~~~~~~-----~~~~~~~~~~~~g~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~DW~ISRqr~WG~piP  445 (869)
                             +++...     -+|+++ -+.+.|..+++++..|..++.+.+....       +..-..-.+||.-       
T Consensus       452 ~dk~klaeaK~~~y~e~fy~g~ml-ig~y~G~KVe~~K~~i~~~li~~g~a~~-------y~EPEkqVmSRSG-------  516 (1080)
T KOG0437         452 NDKKKLAEAKKLAYLEGFYEGTML-IGKYKGEKVEDAKPKIKTDLIETGDALK-------YNEPEKQVMSRSG-------  516 (1080)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCEEE-EECCCCCCHHHHHHHHHHHHHHCCCCEE-------ECCCCHHHHCCCC-------
T ss_conf             167888876678898764036289-7144650077654678988885033256-------3375023313578-------


Q ss_pred             CCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHH-----HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             22333468463474200011100100022454210024564-----2110136764435643234566643332233555
Q gi|254780802|r  446 VIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTWK-----KIFCVKCGSEALRETDTMDTFVDSSWYYMRYMTP  520 (869)
Q Consensus       446 v~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~r~~dvld~w~dS~~~~~~~~~~  520 (869)
                          ++|          .|. .+|+||..+|++.|+...-.     +.+++....-+....|||..|.+|.-|.     .
T Consensus       517 ----deC----------iVA-L~DQWYldYgE~eWKk~a~~cLe~l~~f~dEtR~~fE~tLdWL~~wacsRsyG-----L  576 (1080)
T KOG0437         517 ----DEC----------IVA-LCDQWYLDYGEAEWKKQAKECLENLNTFSDETRNGFEDTLDWLGQWACSRSYG-----L  576 (1080)
T ss_pred             ----CCE----------EEE-ECCCHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC-----C
T ss_conf             ----825----------999-41302212472989999999986553069788877888889987510120116-----7


Q ss_pred             CCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCC-----C---CC---CCCCCCCCCCCCCCC-------
Q ss_conf             65441013566411433440145554433202345553201347-----8---73---223200222235532-------
Q gi|254780802|r  521 HAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKI-----G---YI---EIDEPFKRLFTQGMV-------  582 (869)
Q Consensus       521 ~~~~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~-----g---~~---~~~~pf~~l~~~G~v-------  582 (869)
                      +++.|||++         +++++..++++++.|+.+.|-...+.     |   .-   ..++.+..+|.++-.       
T Consensus       577 GTrlPWD~q---------yLvESLSDSTIYmAyYTvaHll~~d~~g~~~~plgi~~~QMtdeVwdYvF~~~~~~k~t~i~  647 (1080)
T KOG0437         577 GTRLPWDEQ---------YLVESLSDSTIYMAYYTVAHLLHRDLYGKVEGPLGIKPDQMTDEVWDYVFLNEPYPKNTAIP  647 (1080)
T ss_pred             CCCCCCCHH---------HHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCHHHHHHHHCCCCCCCCCCCC
T ss_conf             777887678---------88776031289999999999987764067766577894654789887865069987677840


Q ss_pred             ---------CCCCCCCCC-CCCCEEECCCHHHC-----CCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCCCC
Q ss_conf             ---------322433235-87001306202210-----256777544110489706404742100000012222100123
Q gi|254780802|r  583 ---------VHETYYQLE-GIKKKYLKPDEVIL-----RNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKS  647 (869)
Q Consensus       583 ---------~~~~~~~~~-~~~~~~~~p~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~~  647 (869)
                               ..+.|++.+ +.+|+++.|||+.+     .+++++..||+-...|++++.+++|||||.||+.++.+.|++
T Consensus       648 ~e~L~~lr~eF~Y~YPiDlrvsGKDLi~NHLtfflynHvAl~~~k~WPkgiraNGHLmLNsEKMSKSTGNfmTL~qaieK  727 (1080)
T KOG0437         648 EEALSNLRREFEYFYPIDLRVSGKDLIPNHLTFFLYNHVALFPEKKWPKGIRANGHLMLNSEKMSKSTGNFMTLEQAIEK  727 (1080)
T ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEEHHHHCCCCCCCCCCCCCCEEEECCHHCCCCCCCEEEHHHHHHH
T ss_conf             99999999763100301344234213523136755400231540028653111766773312205456772459998987


Q ss_pred             CCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC------CC--CCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             4633566655301332111113432101145567788999997630------24--667897569999999999999999
Q gi|254780802|r  648 YGADTARLFVLSDSPPDRDIIWSNKGVDSTYQFIQQIWRLIYNAKD------EL--QTSSTKKDISLISKSTKFLERIEE  719 (869)
Q Consensus       648 yGaD~lRl~~~~~~~~~~d~~~s~~~i~~~~rfl~kl~~l~~~~~~------~~--~~~~~~~D~~ils~~~~~i~~v~~  719 (869)
                      ||||++|+.++.+++.-+|+||.+......   +-||++...-..+      .+  .+..+..|+-+.+++|.+|...++
T Consensus       728 Fgad~tRlalAdaGD~veDANF~ea~AnAa---ILRLyt~~ew~eEm~~~~s~LrtGp~~~FaDrvf~nemN~~i~~t~~  804 (1080)
T KOG0437         728 FGADGTRLALADAGDGVEDANFVEANANAA---ILRLYTYVEWIEEMCENRSSLRTGPASTFADRVFENEMNALIAKTER  804 (1080)
T ss_pred             HCCCCEEEEEECCCCCCCCCHHHHHCCCHH---HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             387520453202268743430666502379---99999999999999743776524862777899999899999999999


Q ss_pred             HHHHCCHHHHHHH-HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEECCCC
Q ss_conf             9881688999999-999999999999862110002217999999999999997223438999999982899835517886
Q gi|254780802|r  720 NYQNLSFNKAVAN-IHELVNVISKPLMEIAKKKSNADRISTIRYILEKLIIMMSPMIPHLAEECWQLLGNAGLVAQQKWP  798 (869)
Q Consensus       720 ~~e~~~f~~ai~~-i~~f~n~ls~~y~~~~k~~~~~~~~~~l~~vl~~l~~lLaPi~PhiaEEiw~~Lg~~~~i~~~~WP  798 (869)
                      +|+.+.|++|+.. +++|.+. .++|-+++.   .......+...++++++||+||+||+||.||+.+++++++....||
T Consensus       805 aye~~~fk~aLK~Gfyd~qaA-rD~Yrel~g---~~mh~dLv~r~ietqtlLLaPi~Ph~aeyiw~~~~~~~~~v~~~wP  880 (1080)
T KOG0437         805 AYEDTLFKDALKYGFYDLQAA-RDMYRELCG---EGMHRDLVFRFIETQTLLLAPICPHLAEYIWRTVLKKNFSVNVGWP  880 (1080)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHC---CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEECCCC
T ss_conf             988867999998505889988-999999704---5531899999999999987412527999999996168855426899


Q ss_pred             CCCH
Q ss_conf             6596
Q gi|254780802|r  799 KLDP  802 (869)
Q Consensus       799 ~~d~  802 (869)
                      .+++
T Consensus       881 ~~s~  884 (1080)
T KOG0437         881 FVSP  884 (1080)
T ss_pred             CCCC
T ss_conf             7897


No 21 
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=100.00  E-value=0  Score=614.46  Aligned_cols=495  Identities=20%  Similarity=0.287  Sum_probs=319.3

Q ss_pred             CCEEEEECCCCCCCCCCCCHHHHHHH-HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             83899807789789874004779778-99999977718985567688140205899999980999999999999999999
Q gi|254780802|r   34 KKYFVLEMFPYPSGNIHMGHLRNYVI-GDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQ  112 (869)
Q Consensus        34 ~kf~i~~~pPy~nG~lHiGH~~~~t~-~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~  112 (869)
                      .||+||.|+||+||.|||||+++.++ +||++||+||+|++|+|++|||+||+|||..|++.++.|+++++++.+.++++
T Consensus         3 ~k~~iTt~~Py~nG~lHiGH~~~~~l~aDi~aRy~R~~G~~v~~~~GtD~hG~~i~~~A~k~g~~p~e~~~~~~~~~~~~   82 (558)
T PRK12268          3 MRILITSAWPYANGPLHLGHLAGSYLPADVYARYQRLKGNEVLFVSGSDEHGTPIELEAEKEGVSPQELADKYHEEHKED   82 (558)
T ss_pred             CCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf             51898479988889855231114198999999999837998797584064749999999985999999999999999999


Q ss_pred             HHHCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             99819176646982147735999999999999988963412213321477676778989843853345643223347523
Q gi|254780802|r  113 LQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQVINGRGWRSDAPVEQRSLPQW  192 (869)
Q Consensus       113 ~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~pV~wcp~~~t~la~~Ev~~g~~~~~~~~v~~~~~~~~  192 (869)
                      |++||++.||  .++|++|.+.+.|++.|.+|+++|+||++.++++|||.|++.|+|..| .|.|..|+++-.+.+    
T Consensus        83 ~~~lgis~D~--f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~~fl~d~~v-~G~cP~c~~~~~~Gd----  155 (558)
T PRK12268         83 FEKLGISYDN--YTRTTSPEHHELVQEFFLKLYENGYIEKKTIEQAYCPSDGRFLPDRYV-EGTCPYCGYEKARGD----  155 (558)
T ss_pred             HHHCCCCCCC--CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHH-CCCCCCCCCCCCCCC----
T ss_conf             9981983776--866898899999999999999889933013534368411231312331-540677687435673----


Q ss_pred             CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCC
Q ss_conf             34303444544321002255432222210001455767545355567777775136532001344432320033024432
Q gi|254780802|r  193 FFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIRWEIVSNTIDQIEEILVYTTRPETIFGASFIAIAVDHSI  272 (869)
Q Consensus       193 ~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~TtrPeTl~g~~~i~v~~~~~~  272 (869)
                                                  +                                       +.++        
T Consensus       156 ----------------------------~---------------------------------------ce~c--------  160 (558)
T PRK12268        156 ----------------------------Q---------------------------------------CDNC--------  160 (558)
T ss_pred             ----------------------------H---------------------------------------HHHC--------
T ss_conf             ----------------------------2---------------------------------------5324--------


Q ss_pred             CHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             03454131458999886531111245554302553237861037777741577631123454533322211134672110
Q gi|254780802|r  273 SEKLSCDNTDIKEFCDEEKQKGTSLSVLDKTEKKGIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIFGCPFADQRDM  352 (869)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~P~~~~~~ipv~~~~~V~~~~GTG~V~~~P~h~~~D~  352 (869)
                                                       +..+.....++|..              .-.|+              
T Consensus       161 ---------------------------------g~~~~~~dli~p~~--------------~~~g~--------------  179 (558)
T PRK12268        161 ---------------------------------GALLDPTDLINPRS--------------KISGS--------------  179 (558)
T ss_pred             ---------------------------------CCCCCHHHHCCCCC--------------CCCCC--------------
T ss_conf             ---------------------------------76478577248856--------------77899--------------


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHH----HH
Q ss_conf             12210354432101677655542221121012334458300013564665488899997404677520222111----00
Q gi|254780802|r  353 DFAKKYGLPIIPIMKRSINHSQDIEEGKAFSGDGIMINSSFLDGMTNTEALQAVMSHLEKQNIKNSPIGKRKIN----FR  428 (869)
Q Consensus       353 ~~~~k~glpi~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~----~~  428 (869)
                              ++                         .+.......+...+..+.+.+++..... ..+..++.+.    -.
T Consensus       180 --------~~-------------------------e~~~~~~~f~~l~~~~~~l~~~~~~~~~-~p~~~~~~~~~~l~~~  225 (558)
T PRK12268        180 --------TP-------------------------EFRETEHFFLDLPAFQEALRKWIESGTD-WPPNVLNFTLNWLKEG  225 (558)
T ss_pred             --------CC-------------------------EEEECCCEEECCHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHCC
T ss_conf             --------44-------------------------4773453021418778999999853887-7889999999998633


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             01112211232222234223334684634742000111001000224542100245642110136764435643234566
Q gi|254780802|r  429 LRDWCISRQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTWKKIFCVKCGSEALRETDTMDTFV  508 (869)
Q Consensus       429 l~DW~ISRqr~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~dvld~w~  508 (869)
                      |+|||||||++||+|||++.+++. .+.             +|+..+.+.+.....|    +...+.    ..++.+.|.
T Consensus       226 l~D~~ISR~~~WGipiP~~~~~~~-~iy-------------VW~Da~~~yis~~~~~----~~~~~~----~~~~~~~W~  283 (558)
T PRK12268        226 LKPRAITRDLPWGIPIPFEGAEGK-VFY-------------VWFDAPIGYISATKEW----AKRKGD----PEAWKEFWL  283 (558)
T ss_pred             CCCCCCCCCCCCCEECCCCCCCCC-EEE-------------EECCCCCCHHHHHHHH----HHCCCC----HHHHHHHCC
T ss_conf             756545553878657885556896-798-------------8657872203433654----541698----567987278


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             64333223355565441013566411433440145554433202345553201347873223200222235532322433
Q gi|254780802|r  509 DSSWYYMRYMTPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIGYIEIDEPFKRLFTQGMVVHETYY  588 (869)
Q Consensus       509 dS~~~~~~~~~~~~~~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~g~~~~~~pf~~l~~~G~v~~~~~~  588 (869)
                      +|..-                        .+++-|.|-+.-   ++-+|...|+..+. ....| +.++.||++      
T Consensus       284 ~~~~~------------------------~~~f~GkDii~F---H~v~wpa~l~a~~~-~~~lP-~~i~~~g~~------  328 (558)
T PRK12268        284 DSDTK------------------------YYYFIGKDNIPF---HSVIWPAMLLGSGE-PYKLP-TAIVSSEYL------  328 (558)
T ss_pred             CCCCE------------------------EEEECCCCCCHH---HHHHHHHHHHHCCC-CCCCC-CEEEEEEEE------
T ss_conf             99842------------------------776436665434---78799999973379-87788-778775568------


Q ss_pred             CCCCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf             23587001306202210256777544110489706404742100000012222100123463356665530133211111
Q gi|254780802|r  589 QLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDII  668 (869)
Q Consensus       589 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~~~~~~~~~~d~~  668 (869)
                                                          ..+|+|||||+||+|+|.+++++||||+||+|+++.++.++|.+
T Consensus       329 ------------------------------------~~~G~KmSKS~Gnvi~p~~~i~~yg~D~lRy~L~~~~~~~~D~~  372 (558)
T PRK12268        329 ------------------------------------TYEGQKFSKSRGWGIWVDDALERLPPDYLRYYLAANAPENSDTD  372 (558)
T ss_pred             ------------------------------------EECCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCC
T ss_conf             ------------------------------------74684114557887798999987490777899885488888888


Q ss_pred             CCCCCHHHH---------HHHHHHHHHHHHHHHCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf             343210114---------55677889999976302466---789756999999999999999998816889999999999
Q gi|254780802|r  669 WSNKGVDST---------YQFIQQIWRLIYNAKDELQT---SSTKKDISLISKSTKFLERIEENYQNLSFNKAVANIHEL  736 (869)
Q Consensus       669 ~s~~~i~~~---------~rfl~kl~~l~~~~~~~~~~---~~~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai~~i~~f  736 (869)
                      ||.+.+...         .|+++|+..++....++..+   ..+..|+|+++++++++++++++|++|+|++|++.+++|
T Consensus       373 fs~~~~~~~~N~dL~~~~gNl~~R~~~~~~k~~~g~~p~~~~~~~~d~~l~~~~~~~~~~v~~~~e~~~~~~Al~~i~~~  452 (558)
T PRK12268        373 FTWEEFIRRVNSELADKYGNLVNRVLSFIEKNFGGEVPEPGELGEEDEELLEKFQELFKEVGEHYEAIEFKKALEEIMEL  452 (558)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             79999999999999999999999999999986589789876798565999999999999999999751799999999999


Q ss_pred             HHHHHHHHHHHCCCC---CCCC-HHHH---HHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEECCCCC
Q ss_conf             999999998621100---0221-7999---9999999999972234389999999828998355178866
Q gi|254780802|r  737 VNVISKPLMEIAKKK---SNAD-RIST---IRYILEKLIIMMSPMIPHLAEECWQLLGNAGLVAQQKWPK  799 (869)
Q Consensus       737 ~n~ls~~y~~~~k~~---~~~~-~~~~---l~~vl~~l~~lLaPi~PhiaEEiw~~Lg~~~~i~~~~WP~  799 (869)
                      +...+++..+....+   .+.+ ..++   +.++++.+++||+||||++||+||++||-++ .....|+.
T Consensus       453 ~~~~N~y~~~~~PW~l~k~d~~~~~~vl~~~l~~lr~~~ilL~P~mP~~se~i~~~Lg~~~-~~~~~w~~  521 (558)
T PRK12268        453 ARLANKYLNEKAPWKLAKTDPERAAAVLYTALNLVKLLAILLYPFLPFSAEKIWEMLGLPN-IEKLSWEE  521 (558)
T ss_pred             HHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCC-CCCCCHHH
T ss_conf             9999999983798543168999999999999999999999986740399999999849997-75555144


No 22 
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=100.00  E-value=0  Score=606.82  Aligned_cols=454  Identities=26%  Similarity=0.405  Sum_probs=341.9

Q ss_pred             CCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf             83899807789789874004779778999999777189855676881402058999999809999999999999999999
Q gi|254780802|r   34 KKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQL  113 (869)
Q Consensus        34 ~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~~  113 (869)
                      ++|+|+.||||+||.||||||++|+.+||++||+||+|++|+|++|+|+||+||+.+|++.+++|.+++.++.+.++++|
T Consensus         1 k~~~it~p~Py~nG~lHlGHa~~~~~~Dv~~Ry~R~~G~~v~~~~GtD~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~   80 (512)
T PRK11893          1 KKFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIERKAEEAGISPQELADRNSASFKRLW   80 (512)
T ss_pred             CCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             97899689998899734463587999999999999559970746871775199999999859999999999999999999


Q ss_pred             HHCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCHHHHHCC-----CCCCCCCCCCCCC
Q ss_conf             98191766469821477359999999999999889634122133214776767789898438-----5334564322334
Q gi|254780802|r  114 QSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQVING-----RGWRSDAPVEQRS  188 (869)
Q Consensus       114 ~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~pV~wcp~~~t~la~~Ev~~g-----~~~~~~~~v~~~~  188 (869)
                      +++|++.|  +-.+|+|+.+.+.++..|.+|+++|+||++..+++|||.|++-+.+.++..+     .|..|+.+++.++
T Consensus        81 ~~l~i~~D--~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~c~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~  158 (512)
T PRK11893         81 EALNISYD--DFIRTTDERHKEAVQEIFQRLLANGDIYLGKYSGWYCVRCEEFKTESEARLGEDGCPRCPIHGKPVEWVE  158 (512)
T ss_pred             HHCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCEEEE
T ss_conf             98099888--7877998799999999999997679774324443226886444577772366578865555799776872


Q ss_pred             CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEC
Q ss_conf             75233430344454432100225543222221000145576754535556777777513653200134443232003302
Q gi|254780802|r  189 LPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIRWEIVSNTIDQIEEILVYTTRPETIFGASFIAIAV  268 (869)
Q Consensus       189 ~~~~~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~TtrPeTl~g~~~i~v~~  268 (869)
                      ..+|||+++++.+.+.+.+.                                                            
T Consensus       159 ~~~~flkl~~~~~~l~~~~~------------------------------------------------------------  178 (512)
T PRK11893        159 EESYFFRLSKYQDKLLELYE------------------------------------------------------------  178 (512)
T ss_pred             CCCCEECCHHHHHHHHHHHH------------------------------------------------------------
T ss_conf             47611205054677999972------------------------------------------------------------


Q ss_pred             CCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             44320345413145899988653111124555430255323786103777774157763112345453332221113467
Q gi|254780802|r  269 DHSISEKLSCDNTDIKEFCDEEKQKGTSLSVLDKTEKKGIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIFGCPFAD  348 (869)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~P~~~~~~ipv~~~~~V~~~~GTG~V~~~P~h~  348 (869)
                                                                    .+|-            ++.           |   
T Consensus       179 ----------------------------------------------~~~~------------~~~-----------p---  186 (512)
T PRK11893        179 ----------------------------------------------ANPD------------FIQ-----------P---  186 (512)
T ss_pred             ----------------------------------------------CCCC------------CCC-----------C---
T ss_conf             ----------------------------------------------4986------------518-----------6---


Q ss_pred             CCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf             21101221035443210167765554222112101233445830001356466548889999740467752022211100
Q gi|254780802|r  349 QRDMDFAKKYGLPIIPIMKRSINHSQDIEEGKAFSGDGIMINSSFLDGMTNTEALQAVMSHLEKQNIKNSPIGKRKINFR  428 (869)
Q Consensus       349 ~~D~~~~~k~glpi~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~  428 (869)
                                                                         ...+..+..++.               ..
T Consensus       187 ---------------------------------------------------~~~~~~~~~~l~---------------~~  200 (512)
T PRK11893        187 ---------------------------------------------------ESRRNEVINFVK---------------SG  200 (512)
T ss_pred             ---------------------------------------------------HHHHHHHHHHHH---------------CC
T ss_conf             ---------------------------------------------------999999999985---------------77


Q ss_pred             CCCCCCCCCC-CCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             0111221123-222223422333468463474200011100100022454210024564211013676443564323456
Q gi|254780802|r  429 LRDWCISRQR-SWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTWKKIFCVKCGSEALRETDTMDTF  507 (869)
Q Consensus       429 l~DW~ISRqr-~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~dvld~w  507 (869)
                      ++|||||||+ .||+|+|.-                                                    +..++++|
T Consensus       201 l~d~~ISR~~~~WGi~vP~~----------------------------------------------------~~~~~yvW  228 (512)
T PRK11893        201 LKDLSISRTNFDWGIPVPGD----------------------------------------------------PKHVIYVW  228 (512)
T ss_pred             CCCCCEECCCCCCCCCCCCC----------------------------------------------------CCCCEEEH
T ss_conf             87661525678789988888----------------------------------------------------88620112


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             66433322335556544101356641143344014555443320234555320134787322320022223553232243
Q gi|254780802|r  508 VDSSWYYMRYMTPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIGYIEIDEPFKRLFTQGMVVHETY  587 (869)
Q Consensus       508 ~dS~~~~~~~~~~~~~~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~g~~~~~~pf~~l~~~G~v~~~~~  587 (869)
                      |||.+.|+..+...  .+.+.+.++.|||.|+...|.|.+.-|..+   |...+...|.   . .+++++.||++.    
T Consensus       229 fda~~~y~s~~~~~--~~~~~~~~~~~w~~~vh~~G~Dii~fH~~~---~~a~l~~~~~---~-~p~~~~~hg~l~----  295 (512)
T PRK11893        229 FDALLNYLTALGYD--EPDLEELFRKYWPADVHLIGKDILRFHAVY---WPAFLMAAGL---P-LPKRVFAHGFLT----  295 (512)
T ss_pred             HHHHHHHHHHHCCC--CCCCHHHHHHCCCCEEEECCCCCCCHHHHH---HHHHHHHCCC---C-CCCCCCCCEEEE----
T ss_conf             53135567764588--765647898448750432366512013888---9999986699---9-886343111488----


Q ss_pred             CCCCCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf             32358700130620221025677754411048970640474210000001222210012346335666553013321111
Q gi|254780802|r  588 YQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDI  667 (869)
Q Consensus       588 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~~~~~~~~~~d~  667 (869)
                                                            .+|+|||||+||+|+|.+++++||||++|+|+++.++.++|.
T Consensus       296 --------------------------------------~~G~KmSKS~Gn~I~~~d~l~~yg~D~lR~~L~~~~p~~~D~  337 (512)
T PRK11893        296 --------------------------------------NDGQKMSKSLGNVIDPFDLVDKFGVDAVRYFLLREIPFGQDG  337 (512)
T ss_pred             --------------------------------------ECCCEECCCCCCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCC
T ss_conf             --------------------------------------757150134787589999999859504028776328877787


Q ss_pred             CCCCCCHHHHHH--HHHHHHHHHHHHH-------CCCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf             134321011455--6778899999763-------0246---678975699999999999999999881688999999999
Q gi|254780802|r  668 IWSNKGVDSTYQ--FIQQIWRLIYNAK-------DELQ---TSSTKKDISLISKSTKFLERIEENYQNLSFNKAVANIHE  735 (869)
Q Consensus       668 ~~s~~~i~~~~r--fl~kl~~l~~~~~-------~~~~---~~~~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai~~i~~  735 (869)
                      +|+++.+....|  +.++++|++....       +...   ......|.|+++++++++++++++||+|+|++|++.+++
T Consensus       338 ~Fs~~~f~~~~N~~l~~~~gNl~~R~~~~~~~~~~~~~p~~~~~~~~d~~~~~~~~~~~~~v~~~~e~~~~~~a~~~i~~  417 (512)
T PRK11893        338 DFSEEAFINRINADLANDLGNLLSRTLSMIAKYFDGKVPEPGEFSEADAALLEKADAALEQVREAMDNFAFHKALEAILE  417 (512)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             87899999897589999999999999999987517878886658876899999999999999999971259999999999


Q ss_pred             HHHHHHHHHHHHCCCCC---CCC----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC
Q ss_conf             99999999986211000---221----79999999999999972234389999999828998
Q gi|254780802|r  736 LVNVISKPLMEIAKKKS---NAD----RISTIRYILEKLIIMMSPMIPHLAEECWQLLGNAG  790 (869)
Q Consensus       736 f~n~ls~~y~~~~k~~~---~~~----~~~~l~~vl~~l~~lLaPi~PhiaEEiw~~Lg~~~  790 (869)
                      ++...+++.......+.   +.+    ...++.++++.+++||+|||||+||+||+.||-++
T Consensus       418 ~~~~~N~y~~~~~PW~l~k~d~~~~~~il~~~~~~~~~l~ill~P~~P~~ae~l~~~Lg~~~  479 (512)
T PRK11893        418 LAAEANKYIDEQAPWSLAKTDPERLATVLYTLLESLRIIAVLLQPVMPELSAKILDQLGLEE  479 (512)
T ss_pred             HHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCC
T ss_conf             99999999884787533158999999999999999999999985843599999999849998


No 23 
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=100.00  E-value=0  Score=582.01  Aligned_cols=455  Identities=24%  Similarity=0.378  Sum_probs=358.1

Q ss_pred             CCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             88389980778978987400477977899999977718985567688140205899999980999999999999999999
Q gi|254780802|r   33 KKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQ  112 (869)
Q Consensus        33 ~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~  112 (869)
                      +++|+||.|+||+||.||+||+++++++|+++||+||+||+|+|+.|+|+||+||+..|++.|++|++++.++.+.++++
T Consensus         3 ~k~~~iTt~ipY~Ng~~HiGHa~~~i~aDv~aRy~R~~G~~v~f~~GtDehG~kI~~~A~~~g~tP~e~~d~~~~~~~~~   82 (644)
T PRK12267          3 KKTFYITTPIYYPSGKLHIGHAYTTIAADVLARYKRLQGYDVFFLTGTDEHGQKIQQKAEEAGITPQEYVDEISAGFKDL   82 (644)
T ss_pred             CCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf             99989968998889985545348789999999999846997598487687529999999985999999999999999999


Q ss_pred             HHHCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCHHHHHC-CCCCCCCCCCCCCCCCC
Q ss_conf             99819176646982147735999999999999988963412213321477676778989843-85334564322334752
Q gi|254780802|r  113 LQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQVIN-GRGWRSDAPVEQRSLPQ  191 (869)
Q Consensus       113 ~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~pV~wcp~~~t~la~~Ev~~-g~~~~~~~~v~~~~~~~  191 (869)
                      |++||++.|  +-.+|+++.+.+.+|+.|.+|+++|+||++.+.+.|||.|++.+++.++++ |.|..|+.+++..+..+
T Consensus        83 ~~~l~Is~D--~f~rTt~~~h~~~vq~if~~L~~kG~Iy~~~~~~~Yc~~ce~f~~~~~l~d~g~cp~cg~~~e~~~ee~  160 (644)
T PRK12267         83 WDKLDISYD--KFIRTTDERHKKVVQKVFEKLYDQGDIYLGEYEGWYCVSCETFFTESQLVDGGKCPDSGHEVELVKEES  160 (644)
T ss_pred             HHHCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCEEECCCC
T ss_conf             998699678--785489889999999999999988997866551232587543336244045786877899764640565


Q ss_pred             CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCC
Q ss_conf             33430344454432100225543222221000145576754535556777777513653200134443232003302443
Q gi|254780802|r  192 WFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIRWEIVSNTIDQIEEILVYTTRPETIFGASFIAIAVDHS  271 (869)
Q Consensus       192 ~~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~TtrPeTl~g~~~i~v~~~~~  271 (869)
                      |||+++.+.+.|++.++                                                               
T Consensus       161 yffkL~~~~~~L~~~~~---------------------------------------------------------------  177 (644)
T PRK12267        161 YFFRMSKYADRLLEFYE---------------------------------------------------------------  177 (644)
T ss_pred             EEEEHHHHHHHHHHHHH---------------------------------------------------------------
T ss_conf             14434667899999996---------------------------------------------------------------


Q ss_pred             CCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             20345413145899988653111124555430255323786103777774157763112345453332221113467211
Q gi|254780802|r  272 ISEKLSCDNTDIKEFCDEEKQKGTSLSVLDKTEKKGIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIFGCPFADQRD  351 (869)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~P~~~~~~ipv~~~~~V~~~~GTG~V~~~P~h~~~D  351 (869)
                                                                 .||   +.   |      .|+                
T Consensus       178 -------------------------------------------~~p---~~---i------~p~----------------  186 (644)
T PRK12267        178 -------------------------------------------ENP---DF---I------QPE----------------  186 (644)
T ss_pred             -------------------------------------------CCC---CE---E------CCH----------------
T ss_conf             -------------------------------------------099---74---6------762----------------


Q ss_pred             CHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCC
Q ss_conf             01221035443210167765554222112101233445830001356466548889999740467752022211100011
Q gi|254780802|r  352 MDFAKKYGLPIIPIMKRSINHSQDIEEGKAFSGDGIMINSSFLDGMTNTEALQAVMSHLEKQNIKNSPIGKRKINFRLRD  431 (869)
Q Consensus       352 ~~~~~k~glpi~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~D  431 (869)
                         .                                              .+.++++.+.+              -.|+|
T Consensus       187 ---~----------------------------------------------~~ne~~~~~l~--------------~gL~D  203 (644)
T PRK12267        187 ---S----------------------------------------------RKNEMLNNFIK--------------PGLED  203 (644)
T ss_pred             ---H----------------------------------------------HHHHHHHHHHH--------------CCCCC
T ss_conf             ---5----------------------------------------------88799999985--------------77855


Q ss_pred             CCCCCCC-CCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             1221123-222223422333468463474200011100100022454210024564211013676443564323456664
Q gi|254780802|r  432 WCISRQR-SWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTWKKIFCVKCGSEALRETDTMDTFVDS  510 (869)
Q Consensus       432 W~ISRqr-~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~dvld~w~dS  510 (869)
                      |||||++ +||+|+|.  .+                                                  ..++.+|||+
T Consensus       204 ~~ISR~~~~WGipvP~--d~--------------------------------------------------~~v~YVWfDA  231 (644)
T PRK12267        204 LAVSRTSFDWGIPVPS--DP--------------------------------------------------KHVVYVWIDA  231 (644)
T ss_pred             CCEECCCCCCCCCCCC--CC--------------------------------------------------CEEEEEEECC
T ss_conf             4302477888885789--87--------------------------------------------------6079984224


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             33322335556544101356641143344014555443320234555320134787322320022223553232243323
Q gi|254780802|r  511 SWYYMRYMTPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIGYIEIDEPFKRLFTQGMVVHETYYQL  590 (869)
Q Consensus       511 ~~~~~~~~~~~~~~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~g~~~~~~pf~~l~~~G~v~~~~~~~~  590 (869)
                      .+.|+...++...   +.+.++.|||+|+.+.|.|-..-|   +-+|...|+..|.    +++++++.||++.       
T Consensus       232 ~i~Yisa~g~~~~---~~~~~~~~Wp~~~h~iGkDii~FH---~i~wpamL~~~~~----~~p~~v~~hg~~~-------  294 (644)
T PRK12267        232 LLNYITALGYGSD---DDELFMKFWPADVHLVGKDILRFH---AIYWPIMLMALDL----PLPKHLFAHGWWL-------  294 (644)
T ss_pred             CCCHHHHHCCCCC---CCHHHHHHCCHHHCCCCCCHHHHH---HHHHHHHHHHCCC----CCCCEEECCCEEE-------
T ss_conf             3003434138621---226677637313302685532366---8899999997699----9864451044187-------


Q ss_pred             CCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             58700130620221025677754411048970640474210000001222210012346335666553013321111134
Q gi|254780802|r  591 EGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDIIWS  670 (869)
Q Consensus       591 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~~~~~~~~~~d~~~s  670 (869)
                                                         .+|+|||||+||+|+|.+++++||+|++|+|+++..+.++|.+||
T Consensus       295 -----------------------------------~~g~KmSKS~Gn~i~~~~~~~~~g~D~lRyyl~~~~~~~~D~dfs  339 (644)
T PRK12267        295 -----------------------------------MKDGKMSKSKGNVVDPEELVDRYGLDALRYYLLREVPFGSDGDFS  339 (644)
T ss_pred             -----------------------------------CCCCEECCCCCCEECHHHHHHHCCCCCEEEEEEECCCCCCCCCCC
T ss_conf             -----------------------------------178600553684223799987559404364644448878777789


Q ss_pred             CCCHH---------HHHHHHHHHHHHHHHHHCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf             32101---------1455677889999976302466---78975699999999999999999881688999999999999
Q gi|254780802|r  671 NKGVD---------STYQFIQQIWRLIYNAKDELQT---SSTKKDISLISKSTKFLERIEENYQNLSFNKAVANIHELVN  738 (869)
Q Consensus       671 ~~~i~---------~~~rfl~kl~~l~~~~~~~~~~---~~~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai~~i~~f~n  738 (869)
                      ++.+.         ...|+++|+..++....++.-+   .....|..++..+..+++.+.++|++++|++|++.+++++.
T Consensus       340 ~~~f~~r~NsdL~n~lGNl~~R~~~~~~k~~~g~vp~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~Al~~i~~l~~  419 (644)
T PRK12267        340 PEAFVERINSDLANDLGNLLNRTVAMINKYFDGEIPAYKGVTEFDEELLALAKETLKKYEEAMEALQFSRALEELWKLIS  419 (644)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf             99999998899887777899999999887518867888778745699999999999999999971269999999999999


Q ss_pred             HHHHHHHHHCCCCC-----CCCH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC
Q ss_conf             99999986211000-----2217----9999999999999972234389999999828998
Q gi|254780802|r  739 VISKPLMEIAKKKS-----NADR----ISTIRYILEKLIIMMSPMIPHLAEECWQLLGNAG  790 (869)
Q Consensus       739 ~ls~~y~~~~k~~~-----~~~~----~~~l~~vl~~l~~lLaPi~PhiaEEiw~~Lg~~~  790 (869)
                      ..++|..+......     ..++    ..++.++++.+.+||+||||.+|+++|++||-+.
T Consensus       420 ~~N~Yi~~~~PW~L~K~~~~~~~~~~vl~~~l~~~r~l~ilL~P~mP~~a~ki~~~Lgl~~  480 (644)
T PRK12267        420 RANKYIDETAPWVLAKDEGKKERLGAVMAHLAESLRKVAVLLSPFMPETSKKIAEQLGLEI  480 (644)
T ss_pred             HHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCC
T ss_conf             9999888578876636866299999999999999999999706836579999999819997


No 24 
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=100.00  E-value=0  Score=564.74  Aligned_cols=474  Identities=22%  Similarity=0.297  Sum_probs=326.8

Q ss_pred             CCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf             83899807789789874004779778999999777189855676881402058999999809999999999999999999
Q gi|254780802|r   34 KKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQL  113 (869)
Q Consensus        34 ~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~~  113 (869)
                      ++|+||.|+||+||.|||||+++++.+|++|||+||+|++|+|+.|+|+||+||+.+|++.+++|++++.++.+.++++|
T Consensus         2 k~~~iTt~ipY~Ng~~HiGH~~~~i~aDv~aRy~Rl~G~~v~f~~GtDeHG~~i~~~A~~~g~tp~e~~d~~~~~~~~~~   81 (666)
T PRK00133          2 RKILVTCALPYANGPIHLGHLLEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRDF   81 (666)
T ss_pred             CCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             87798179878889843124676999999999998369954984742788489999999859999999999999999999


Q ss_pred             HHCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             98191766469821477359999999999999889634122133214776767789898438533456432233475233
Q gi|254780802|r  114 QSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQVINGRGWRSDAPVEQRSLPQWF  193 (869)
Q Consensus       114 ~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~pV~wcp~~~t~la~~Ev~~g~~~~~~~~v~~~~~~~~~  193 (869)
                      ++||++.|  +-++|+++.+.+.+|+.|.+|+++|+||++.+++.|||.|++.|+|..| .|.|..|+++....+.    
T Consensus        82 ~~l~Is~D--~f~rTt~~~h~~~vq~~f~~l~~~G~iy~~~~~~~Yc~~~e~fl~Dr~V-~GtCP~C~~~~~~GD~----  154 (666)
T PRK00133         82 AGFGISFD--NYGSTHSEENRELAQEIYLKLKENGYIYERTIEQLYDPEKGMFLPDRFV-KGTCPKCGAEDQYGDN----  154 (666)
T ss_pred             HHCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCEE-EEECCCCCCHHHCCCC----
T ss_conf             98399578--7857898899999999999999789989740355566875655254234-2025777871204874----


Q ss_pred             CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCC
Q ss_conf             43034445443210022554322222100014557675453555677777751365320013444323200330244320
Q gi|254780802|r  194 FKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIRWEIVSNTIDQIEEILVYTTRPETIFGASFIAIAVDHSIS  273 (869)
Q Consensus       194 ~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~TtrPeTl~g~~~i~v~~~~~~~  273 (869)
                                                                          +..+-.++.|                  
T Consensus       155 ----------------------------------------------------Ce~cG~~~~p------------------  164 (666)
T PRK00133        155 ----------------------------------------------------CEVCGATYSP------------------  164 (666)
T ss_pred             ----------------------------------------------------CCCCCCCCCC------------------
T ss_conf             ----------------------------------------------------2245651673------------------


Q ss_pred             HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             34541314589998865311112455543025532378610377777415776311234545333222111346721101
Q gi|254780802|r  274 EKLSCDNTDIKEFCDEEKQKGTSLSVLDKTEKKGIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIFGCPFADQRDMD  353 (869)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~P~~~~~~ipv~~~~~V~~~~GTG~V~~~P~h~~~D~~  353 (869)
                                                            ...++|..              .-.|+-++.           
T Consensus       165 --------------------------------------~eL~~p~~--------------~~~g~~~e~-----------  181 (666)
T PRK00133        165 --------------------------------------TELINPKS--------------AISGATPVL-----------  181 (666)
T ss_pred             --------------------------------------HHHCCCCC--------------CCCCCCCEE-----------
T ss_conf             --------------------------------------44238643--------------457985166-----------


Q ss_pred             HHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHH----HHHC
Q ss_conf             221035443210167765554222112101233445830001356466548889999740467752022211----1000
Q gi|254780802|r  354 FAKKYGLPIIPIMKRSINHSQDIEEGKAFSGDGIMINSSFLDGMTNTEALQAVMSHLEKQNIKNSPIGKRKI----NFRL  429 (869)
Q Consensus       354 ~~~k~glpi~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~l~~~~~~~~~~~~~~~----~~~l  429 (869)
                                            .++           ...+   +...+..+.+.+++....+  .+..++.+    .-.|
T Consensus       182 ----------------------~~~-----------e~~f---f~Ls~~~~~L~~~~~~~~~--~~~~~n~~~~~l~~gL  223 (666)
T PRK00133        182 ----------------------KES-----------EHFF---FKLPDFEEFLKEWTRSGAL--QPNVANKMKEWLEEGL  223 (666)
T ss_pred             ----------------------ECC-----------CCHH---HHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHCCC
T ss_conf             ----------------------035-----------3333---1387777899875104889--8789999999985788


Q ss_pred             CCCCCCCCCCC-CCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             11122112322-22234223334684634742000111001000224542100245642110136764435643234566
Q gi|254780802|r  430 RDWCISRQRSW-GCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTWKKIFCVKCGSEALRETDTMDTFV  508 (869)
Q Consensus       430 ~DW~ISRqr~W-G~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~dvld~w~  508 (869)
                      +|||||||+.| |+|+|-.    .+                                                -++.+||
T Consensus       224 ~D~~ISR~~~W~GipvP~~----~~------------------------------------------------kv~YVW~  251 (666)
T PRK00133        224 QDWDISRDAPYFGFEIPGA----PG------------------------------------------------KVFYVWL  251 (666)
T ss_pred             CCCCEEEECCCCCEECCCC----CC------------------------------------------------EEEEEEE
T ss_conf             7753040278444588898----76------------------------------------------------4899961


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHCCCHH-----HHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             643332233555654410135664114334-----401455544332023455532013478732232002222355323
Q gi|254780802|r  509 DSSWYYMRYMTPHAKDPINKELVRQWFPVD-----QYIGGIEHAVLHLLYARFFAHILKKIGYIEIDEPFKRLFTQGMVV  583 (869)
Q Consensus       509 dS~~~~~~~~~~~~~~~~~~e~~~~~~P~D-----~~i~g~d~~~~~~~~~r~~~~~l~~~g~~~~~~pf~~l~~~G~v~  583 (869)
                      |+-+-|+..+....  ..+.+.++.|||.|     +.+-|.|-  +. +++-+|..+|+..|.   ..| ++++.||++ 
T Consensus       252 DA~igYis~t~~~~--~~~~~~~~~~W~~d~~~~~vhfiGKDi--i~-FH~i~wPa~L~~~g~---~lP-~~v~~hg~l-  321 (666)
T PRK00133        252 DAPIGYISSTKNLC--DKRGLDWDEYWKKDSDTELYHFIGKDI--IY-FHTLFWPAMLEGAGY---RLP-TNVFAHGFL-  321 (666)
T ss_pred             CCCHHHHHHHHHHC--CCCCCCHHHCCCCCCCCCEEEECCCCH--HH-HHHHHHHHHHHHCCC---CCC-CCCCCCCCE-
T ss_conf             56453777644331--435655876388998763367534431--14-647679999984677---888-612114648-


Q ss_pred             CCCCCCCCCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf             22433235870013062022102567775441104897064047421000000122221001234633566655301332
Q gi|254780802|r  584 HETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPP  663 (869)
Q Consensus       584 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~~~~~~~~  663 (869)
                                                               ..+|+|||||+||+|+|.+++++||+|++|+|+++..+.
T Consensus       322 -----------------------------------------~~~G~KmSKS~Gnvv~p~~~l~~yg~D~lRY~l~~~~p~  360 (666)
T PRK00133        322 -----------------------------------------TVEGAKMSKSRGTFIWARTYLDHLDPDYLRYYLAAKLPS  360 (666)
T ss_pred             -----------------------------------------EECCEEEECCCCEEEEHHHHHHHCCCCCEEHHHHHCCCC
T ss_conf             -----------------------------------------778806001267176179999866964530203310789


Q ss_pred             C-CCCCCCCCCH---------HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf             1-1111343210---------11455677889999976302466789756999999999999999998816889999999
Q gi|254780802|r  664 D-RDIIWSNKGV---------DSTYQFIQQIWRLIYNAKDELQTSSTKKDISLISKSTKFLERIEENYQNLSFNKAVANI  733 (869)
Q Consensus       664 ~-~d~~~s~~~i---------~~~~rfl~kl~~l~~~~~~~~~~~~~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai~~i  733 (869)
                      + +|.+||++.+         ....|+++|+..++....++.-+ ....|..++..+..+++++.++|++++|++|++.+
T Consensus       361 ~~~D~dfs~~~~~~r~NsdLan~lGNl~~R~~~~~~k~~~g~vp-~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~Al~~i  439 (666)
T PRK00133        361 RIDDIDFNWEDFQQRVNSDLVGKLVNFASRAAGFINKRFDGKLP-DELADPELLEEFRAAAESIAEAYEAREFRKALREI  439 (666)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf             87677869999999986888876668999999999986599789-97458999999999999999999810699999999


Q ss_pred             HHHHHHHHHHHHHHCCCCC-----CCCH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC
Q ss_conf             9999999999986211000-----2217----999999999999997223438999999982899
Q gi|254780802|r  734 HELVNVISKPLMEIAKKKS-----NADR----ISTIRYILEKLIIMMSPMIPHLAEECWQLLGNA  789 (869)
Q Consensus       734 ~~f~n~ls~~y~~~~k~~~-----~~~~----~~~l~~vl~~l~~lLaPi~PhiaEEiw~~Lg~~  789 (869)
                      ++++...++|..+......     ...+    ..++.++++.+.+||+||||.+|++||++||-+
T Consensus       440 ~~l~~~~NkYi~~~~PW~L~K~d~~~~~l~~Vl~~~le~lr~laiLL~PfmP~~a~ki~~~Lg~~  504 (666)
T PRK00133        440 MALADRANKYVDDKEPWKLAKQEGEDAALQEVCSVGLNLFRALAIYLKPVLPELAERAEAFLNVE  504 (666)
T ss_pred             HHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC
T ss_conf             99999998887744876553685668999999999999999999972386737899999980989


No 25 
>cd00817 ValRS_core This is the catalytic core domain of valine amino-acyl tRNA synthetases (ValRS) . This enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.  ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00  E-value=0  Score=571.44  Aligned_cols=346  Identities=30%  Similarity=0.524  Sum_probs=260.3

Q ss_pred             CCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCC----------------C
Q ss_conf             838998077897898740047797789999997771898556768814020589999998099----------------9
Q gi|254780802|r   34 KKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNV----------------H   97 (869)
Q Consensus        34 ~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~----------------~   97 (869)
                      ++|+||+|||||||+|||||+++++++|+++||+||+|++|+|++|||+||||||.++++...                .
T Consensus         1 k~f~itTpipYaNG~~HiGHa~~~i~aDv~aRy~rm~G~~V~f~~G~DeHGlpie~~~ek~~~~~~~~~~~~~~~~f~~~   80 (363)
T cd00817           1 EPFVIDTPPPNVTGSLHIGHALTNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLEK   80 (363)
T ss_pred             CCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHCCHHHHHHH
T ss_conf             98599489998888613527898999999999998169977887845756689999999983605665000798999999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCHHHHHCCCC
Q ss_conf             99999999999999999819176646982147735999999999999988963412213321477676778989843853
Q gi|254780802|r   98 PKMWTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQVINGRG  177 (869)
Q Consensus        98 ~~~~~~~~i~~~k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~pV~wcp~~~t~la~~Ev~~g~~  177 (869)
                      |++++.++.+.++++|++||+++||++.++|+|+.|++++||.|.+|+++|+||++.+||+|+.                
T Consensus        81 ~~~~~~~~~~~~~~~~~~lg~~~D~~~~~rT~d~~h~~~vq~~f~~l~~~G~iY~~~~~v~~~v----------------  144 (363)
T cd00817          81 CWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSKAVQEAFVRLYEKGLIYRANRLVNWVI----------------  144 (363)
T ss_pred             HHHHHHHHHHHHHHHHHHHCHHCCCCCCEECCCHHHHHHHHHHHHHHHHCCCEECCCCEECCEE----------------
T ss_conf             9999999999999999983301165750343776799999999999998889763682457377----------------


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf             34564322334752334303444544321002255432222210001455767545355567777775136532001344
Q gi|254780802|r  178 WRSDAPVEQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIRWEIVSNTIDQIEEILVYTTRPET  257 (869)
Q Consensus       178 ~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~TtrPeT  257 (869)
                             |....++||++.++..+++++..+                                                 
T Consensus       145 -------e~~~~~~~f~~~~~~~~~l~~~~~-------------------------------------------------  168 (363)
T cd00817         145 -------EPLLKPQWFVKVKDLAKAALEAVK-------------------------------------------------  168 (363)
T ss_pred             -------EEEECCEEEEECHHHHHHHHHHHH-------------------------------------------------
T ss_conf             -------998776168987788999999996-------------------------------------------------


Q ss_pred             CCCCCEEEEECCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEEEEEECCCCCCCCC
Q ss_conf             43232003302443203454131458999886531111245554302553237861037777741577631123454533
Q gi|254780802|r  258 IFGASFIAIAVDHSISEKLSCDNTDIKEFCDEEKQKGTSLSVLDKTEKKGIYTGIHVKHPLNPNVVIPVYIANFVFMNYG  337 (869)
Q Consensus       258 l~g~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~P~~~~~~ipv~~~~~V~~~~G  337 (869)
                                                                               .+++  .    +           
T Consensus       169 ---------------------------------------------------------~~~~--~----~-----------  174 (363)
T cd00817         169 ---------------------------------------------------------EGDI--K----F-----------  174 (363)
T ss_pred             ---------------------------------------------------------CCCC--E----E-----------
T ss_conf             ---------------------------------------------------------2997--7----8-----------


Q ss_pred             CCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf             32221113467211012210354432101677655542221121012334458300013564665488899997404677
Q gi|254780802|r  338 TGAIFGCPFADQRDMDFAKKYGLPIIPIMKRSINHSQDIEEGKAFSGDGIMINSSFLDGMTNTEALQAVMSHLEKQNIKN  417 (869)
Q Consensus       338 TG~V~~~P~h~~~D~~~~~k~glpi~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~l~~~~~~~  417 (869)
                            .|.+                                                      .+..+..+++      
T Consensus       175 ------~P~~------------------------------------------------------~~~~~~~~l~------  188 (363)
T cd00817         175 ------VPER------------------------------------------------------MEKRYEDWLE------  188 (363)
T ss_pred             ------ECHH------------------------------------------------------HHHHHHHHHH------
T ss_conf             ------5789------------------------------------------------------9999999985------


Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf             52022211100011122112322222342233346846347420001110010002245421002456421101367644
Q gi|254780802|r  418 SPIGKRKINFRLRDWCISRQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTWKKIFCVKCGSEA  497 (869)
Q Consensus       418 ~~~~~~~~~~~l~DW~ISRqr~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~  497 (869)
                                .++||||||||+||+|||+|+|++|+....+..+...              .....  ....+..++...
T Consensus       189 ----------~l~Dw~ISR~~~WG~piP~~~~~~~~~~~~~~~~~~~--------------~~~~~--~~~~~~~~~~~~  242 (363)
T cd00817         189 ----------NIRDWCISRQLWWGHRIPAWYCEDCGHWVVAREEEEA--------------VDPAI--PEACCPCGSEEL  242 (363)
T ss_pred             ----------CCCCCCCCHHCCCCCCCCEEECCCCCCEEECCCHHHH--------------HHHHH--HCCCCCCCCCCC
T ss_conf             ----------1576533100013666661462789847706733641--------------11243--204788872113


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCC-CCCCCCCCCC
Q ss_conf             356432345666433322335556544101356641143344014555443320234555320134787-3223200222
Q gi|254780802|r  498 LRETDTMDTFVDSSWYYMRYMTPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIGY-IEIDEPFKRL  576 (869)
Q Consensus       498 ~r~~dvld~w~dS~~~~~~~~~~~~~~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~g~-~~~~~pf~~l  576 (869)
                      .|++||+|+||||++.++.....    +.+...++.++|+|+.+.|.|+  +     |||...+...+. +..+.||+++
T Consensus       243 ~~~~dv~dvWfds~~~~~~~~~~----~~~~~~~~~~~p~d~~~~GkDI--i-----rfW~~~~~~~~~~l~~~~P~~~v  311 (363)
T cd00817         243 EQDTDVLDTWFSSSLWPFSTLGW----PEETKDLKKFYPTSLLPTGHDI--I-----FFWVARMIMRGLELTGKLPFKEV  311 (363)
T ss_pred             CCCCCCCCHHHHHCCCCHHHHCC----CCCCCHHHHCCCCCEEEEEEHH--H-----HHHHHHHHHHHHHHCCCCCCCEE
T ss_conf             03677653044524772255089----7433145407876378762388--7-----46999999987662489886566


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             23553232243323587001306202210256777544110489706404742100000012222100123463356665
Q gi|254780802|r  577 FTQGMVVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLF  656 (869)
Q Consensus       577 ~~~G~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~  656 (869)
                      +.||++++                                         .+|+|||||+||||+|.+++++||||+||+|
T Consensus       312 ~~HG~vl~-----------------------------------------~~G~KMSKS~GNvv~p~~~l~~yg~D~lRy~  350 (363)
T cd00817         312 YIHGLVRD-----------------------------------------EDGRKMSKSLGNVIDPLDVIDGYGADALRFT  350 (363)
T ss_pred             EECCEEEC-----------------------------------------CCCCCCCCCCCCCCCHHHHHHHCCCHHHHHH
T ss_conf             87862899-----------------------------------------9988757889986698999987792799999


Q ss_pred             HHHCCCCCCCCCC
Q ss_conf             5301332111113
Q gi|254780802|r  657 VLSDSPPDRDIIW  669 (869)
Q Consensus       657 ~~~~~~~~~d~~~  669 (869)
                      +++++++++|.++
T Consensus       351 l~~~~~~~~D~~~  363 (363)
T cd00817         351 LASAASQGRDINL  363 (363)
T ss_pred             HHHHCCCCCCCCC
T ss_conf             9952998777898


No 26 
>cd00812 LeuRS_core This is the catalytic core domain of leucyl tRNA synthetase (LeuRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00  E-value=0  Score=535.05  Aligned_cols=347  Identities=47%  Similarity=0.868  Sum_probs=264.6

Q ss_pred             CEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCC------------------
Q ss_conf             38998077897898740047797789999997771898556768814020589999998099------------------
Q gi|254780802|r   35 KYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNV------------------   96 (869)
Q Consensus        35 kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~------------------   96 (869)
                      |||||.|+||+||+|||||+++++++||++||+||+|++|+|++|+|+||+||+.+|++.++                  
T Consensus         1 k~~ITta~PY~NG~~HiGH~~~~i~aDi~~Ry~Rm~G~~V~~~~G~DeHG~pI~~~A~~~g~~~~~~~~~~~~~~~~~~~   80 (376)
T cd00812           1 KFYILVMFPYPSGRLHVGHVRTYTIGDIIARYKRMKGYNVLFPMGFDAFGLPAENAADKIGREDEDTIEPYRDVGVPDEE   80 (376)
T ss_pred             CEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCHHHHH
T ss_conf             97998589888974546886989999999999995599704688456567899999999687477653011110001887


Q ss_pred             -----CHHHHHHHHHHHHHHHHHHCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCHHH
Q ss_conf             -----999999999999999999819176646982147735999999999999988963412213321477676778989
Q gi|254780802|r   97 -----HPKMWTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQ  171 (869)
Q Consensus        97 -----~~~~~~~~~i~~~k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~pV~wcp~~~t~la~~E  171 (869)
                           +|++++.++.+.++++|++||+++||+|.|+|+|+.+.++||++|.+|+++|+||++.++|+|||.|++.     
T Consensus        81 ~~~~~~p~~~~~~~~~~~~~~~~~lg~~~D~~~~~~T~~~~~~~~vq~~f~~L~~~G~iy~~~~~~~y~~~~~~~-----  155 (376)
T cd00812          81 IEKFADPKYWTEYFIAKMKEQLKRMGFSIDWRREFTTTDPEYYKFTQWQFLKLKEKGLIYKGEAPVNWCKLLDQW-----  155 (376)
T ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCCEECCCCCCCEE-----
T ss_conf             861279999999999999999998098737686643377789999999999999889889517555364677605-----


Q ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCHH-HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf             84385334564322334752334303-44454432100225543222221000145576754535556777777513653
Q gi|254780802|r  172 VINGRGWRSDAPVEQRSLPQWFFKIS-DLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIRWEIVSNTIDQIEEILV  250 (869)
Q Consensus       172 v~~g~~~~~~~~v~~~~~~~~~~~~~-~~~~~l~~~~~~l~~~p~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~  250 (869)
                                           |++.. ++.+++...++.+..                                      
T Consensus       156 ---------------------f~~~~~~~~~~~~~~~~~~~~--------------------------------------  176 (376)
T cd00812         156 ---------------------FLKYSTEWAERLLKDLEGLDT--------------------------------------  176 (376)
T ss_pred             ---------------------EECCCHHHHHHHHHHHHCCCC--------------------------------------
T ss_conf             ---------------------741667889998740420467--------------------------------------


Q ss_pred             EEECCCCCCCCCEEEEECCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEEEEEECC
Q ss_conf             20013444323200330244320345413145899988653111124555430255323786103777774157763112
Q gi|254780802|r  251 YTTRPETIFGASFIAIAVDHSISEKLSCDNTDIKEFCDEEKQKGTSLSVLDKTEKKGIYTGIHVKHPLNPNVVIPVYIAN  330 (869)
Q Consensus       251 ~TtrPeTl~g~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~P~~~~~~ipv~~~~  330 (869)
                                      .|+            .++..   ..      .          ..+.     +. +.        
T Consensus       177 ----------------~p~------------~~~~~---~~------~----------~~~~-----~~-~~--------  195 (376)
T cd00812         177 ----------------WPE------------EVKNM---QE------N----------WIGW-----LK-GW--------  195 (376)
T ss_pred             ----------------CCH------------HHHHH---HH------H----------HHHH-----CC-CC--------
T ss_conf             ----------------868------------89999---99------9----------8730-----24-65--------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHH
Q ss_conf             34545333222111346721101221035443210167765554222112101233445830001356466548889999
Q gi|254780802|r  331 FVFMNYGTGAIFGCPFADQRDMDFAKKYGLPIIPIMKRSINHSQDIEEGKAFSGDGIMINSSFLDGMTNTEALQAVMSHL  410 (869)
Q Consensus       331 ~V~~~~GTG~V~~~P~h~~~D~~~~~k~glpi~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~l  410 (869)
                                            ..                                                        
T Consensus       196 ----------------------~~--------------------------------------------------------  197 (376)
T cd00812         196 ----------------------AC--------------------------------------------------------  197 (376)
T ss_pred             ----------------------EE--------------------------------------------------------
T ss_conf             ----------------------25--------------------------------------------------------


Q ss_pred             HHHCCCCCCHHHHHHHHHCCCCCCCCCC----CCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf             7404677520222111000111221123----222223422333468463474200011100100022454210024564
Q gi|254780802|r  411 EKQNIKNSPIGKRKINFRLRDWCISRQR----SWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTWK  486 (869)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~l~DW~ISRqr----~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l~~~~~~~  486 (869)
                            ....+......+++||||||||    +||.|||++++++|+.+                               
T Consensus       198 ------~~~~~~~~~~~~l~dw~isr~~~~~~~wg~~ip~~~~~~~~~~-------------------------------  240 (376)
T cd00812         198 ------ARRYGLGTVLPWDRDWLIERLRDSTIYWGYYTPAHHCEKCGPV-------------------------------  240 (376)
T ss_pred             ------EEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEE-------------------------------
T ss_conf             ------4111115406555443413444566667700215975678641-------------------------------


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf             211013676443564323456664333223355565-4410135664114334401455544332023455532013478
Q gi|254780802|r  487 KIFCVKCGSEALRETDTMDTFVDSSWYYMRYMTPHA-KDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIG  565 (869)
Q Consensus       487 ~~~~~~~~~~~~r~~dvld~w~dS~~~~~~~~~~~~-~~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~g  565 (869)
                         +..++....++.+++|+||||.|.++.+..... ....+.+.+++|+|+|+++.|.|.+..|++|..+|+..|...+
T Consensus       241 ---~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~~GkDii~fH~~~~~~~~~~l~~~~  317 (376)
T cd00812         241 ---CPKCGKPAKRETDTMDEFFDSSWYYLRYLDPKNSEAPFDREEFEYWYPVDLYIGGKEHAVNHLLYSRFNHKALFDEG  317 (376)
T ss_pred             ---CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             ---46667555665446886577630146667843344766879998428860688133542013679999999998646


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCC
Q ss_conf             73223200222235532322433235870013062022102567775441104897064047421000000122221001
Q gi|254780802|r  566 YIEIDEPFKRLFTQGMVVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVI  645 (869)
Q Consensus       566 ~~~~~~pf~~l~~~G~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i  645 (869)
                      .   ..|+++++.||++.                                          .+|+|||||+||+|+|.++|
T Consensus       318 ~---~~~p~~v~~hG~l~------------------------------------------~~G~KMSKS~Gn~v~p~~~l  352 (376)
T cd00812         318 T---KEPPKGLRVQGMVL------------------------------------------LEGEKMSKSKGNVVTPDEAI  352 (376)
T ss_pred             C---CCCCCEEEECCCEE------------------------------------------CCCEECCCCCCCCCCHHHHH
T ss_conf             7---77982668757296------------------------------------------69966377899884989999


Q ss_pred             CCCCHHHHHHHHHHCCCCCCCCCC
Q ss_conf             234633566655301332111113
Q gi|254780802|r  646 KSYGADTARLFVLSDSPPDRDIIW  669 (869)
Q Consensus       646 ~~yGaD~lRl~~~~~~~~~~d~~~  669 (869)
                      ++||||++|+|||+.++.++|.+|
T Consensus       353 ~~yg~D~lR~~Ll~~~p~~~D~~F  376 (376)
T cd00812         353 KKYGADATRLYLLFAAPPESDANW  376 (376)
T ss_pred             HHCCCHHHHHHHHHCCCCCCCCCC
T ss_conf             885954999999944995568998


No 27 
>cd00818 IleRS_core This is the catalytic core domain of isoleucine amino-acyl tRNA synthetases (IleRS) . This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.  IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00  E-value=0  Score=530.42  Aligned_cols=322  Identities=31%  Similarity=0.560  Sum_probs=246.2

Q ss_pred             CCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH-CC----------------
Q ss_conf             8389980778978987400477977899999977718985567688140205899999980-99----------------
Q gi|254780802|r   34 KKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREH-NV----------------   96 (869)
Q Consensus        34 ~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~-~~----------------   96 (869)
                      |+|+|++||||+||.+||||+++++++|+++||+||+|++|+|++|+|+||+|||.+|++. +.                
T Consensus         1 p~~~~~~~pPYaNg~pHiGHa~~~i~aDv~aRy~Rl~G~~v~f~~GtDeHG~pIe~~a~k~~~~~~~~~~~~~~~~~f~~   80 (339)
T cd00818           1 PEFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFRA   80 (339)
T ss_pred             CCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHH
T ss_conf             95599589988578734558899999999999998069988778851440399999999964898730476559999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCHHHHHCCC
Q ss_conf             99999999999999999981917664698214773599999999999998896341221332147767677898984385
Q gi|254780802|r   97 HPKMWTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQVINGR  176 (869)
Q Consensus        97 ~~~~~~~~~i~~~k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~pV~wcp~~~t~la~~Ev~~g~  176 (869)
                      .|++++.++.+.++++|+|+|++.||++.|.|+++.|.+.++++|.+|+++|+||+|.+|++|+.               
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~T~~~~~~~~~~~~f~~l~~~G~iy~~~~~~~~p~---------------  145 (339)
T cd00818          81 KCREFALRYIDEQEETFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLYEKGLLYRGYKVVPWPL---------------  145 (339)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCHHCCCCCCEECCCHHHHHHHHHHHHHHHHCCCEECCCEEECCCC---------------
T ss_conf             99999999999999999983735147777121688999999999999998888626760536876---------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf             33456432233475233430344454432100225543222221000145576754535556777777513653200134
Q gi|254780802|r  177 GWRSDAPVEQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIRWEIVSNTIDQIEEILVYTTRPE  256 (869)
Q Consensus       177 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~TtrPe  256 (869)
                              ..+..++|||+++++.+.|++..+.                                               
T Consensus       146 --------~~~~~~~~F~~l~~~~~~ll~~~~~-----------------------------------------------  170 (339)
T cd00818         146 --------IYRATPQWFIRVEKLKDRLLEANDK-----------------------------------------------  170 (339)
T ss_pred             --------CCEECCCEEEECHHHHHHHHHHHHC-----------------------------------------------
T ss_conf             --------0058156799868999999987753-----------------------------------------------


Q ss_pred             CCCCCCEEEEECCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEEEEEECCCCCCCC
Q ss_conf             44323200330244320345413145899988653111124555430255323786103777774157763112345453
Q gi|254780802|r  257 TIFGASFIAIAVDHSISEKLSCDNTDIKEFCDEEKQKGTSLSVLDKTEKKGIYTGIHVKHPLNPNVVIPVYIANFVFMNY  336 (869)
Q Consensus       257 Tl~g~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~P~~~~~~ipv~~~~~V~~~~  336 (869)
                                                                                  +   +. +            
T Consensus       171 ------------------------------------------------------------~---~~-~------------  174 (339)
T cd00818         171 ------------------------------------------------------------V---NW-I------------  174 (339)
T ss_pred             ------------------------------------------------------------C---CE-E------------
T ss_conf             ------------------------------------------------------------8---73-7------------


Q ss_pred             CCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf             33222111346721101221035443210167765554222112101233445830001356466548889999740467
Q gi|254780802|r  337 GTGAIFGCPFADQRDMDFAKKYGLPIIPIMKRSINHSQDIEEGKAFSGDGIMINSSFLDGMTNTEALQAVMSHLEKQNIK  416 (869)
Q Consensus       337 GTG~V~~~P~h~~~D~~~~~k~glpi~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~l~~~~~~  416 (869)
                              |.+.       +                                 +             ..+..+++     
T Consensus       175 --------p~~~-------~---------------------------------~-------------~~l~~~~~-----  188 (339)
T cd00818         175 --------PEWV-------K---------------------------------E-------------GRFGNWLE-----  188 (339)
T ss_pred             --------CCHH-------H---------------------------------H-------------HHHHHHHH-----
T ss_conf             --------8610-------6---------------------------------6-------------49999971-----


Q ss_pred             CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf             75202221110001112211232222234223334684634742000111001000224542100245642110136764
Q gi|254780802|r  417 NSPIGKRKINFRLRDWCISRQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTWKKIFCVKCGSE  496 (869)
Q Consensus       417 ~~~~~~~~~~~~l~DW~ISRqr~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~  496 (869)
                                 .++||||||||+||+|||+|+|++|+.+.                                        
T Consensus       189 -----------~l~Dw~ISR~~~WGipvP~w~~~~~~~~~----------------------------------------  217 (339)
T cd00818         189 -----------NRRDWCISRQRYWGTPIPVWYSEDCGEVL----------------------------------------  217 (339)
T ss_pred             -----------CCCCCEEEECCCCCCCCCEEECCCCCCCC----------------------------------------
T ss_conf             -----------68565044026667534635648998321----------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             43564323456664333223355565441013566411433440145554433202345553201347873223200222
Q gi|254780802|r  497 ALRETDTMDTFVDSSWYYMRYMTPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIGYIEIDEPFKRL  576 (869)
Q Consensus       497 ~~r~~dvld~w~dS~~~~~~~~~~~~~~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~g~~~~~~pf~~l  576 (869)
                      ..|++||+|+||||+..++.....    +.+.+.+..++|+|+++.|+|+  +|.   .||..++...+ +....||+++
T Consensus       218 ~~~~~dv~yVWfDa~~~~~~~~~~----~~~~~~~~~~~p~~~~~~GkDi--~~~---~f~~~~~~~~~-~~~~~P~~~v  287 (339)
T cd00818         218 VRRVPDVLDVWFDSGSMPYAQLHY----PFENEDFEELFPADFILEGSDQ--TRG---WFYSLLLLSTA-LFGKAPYKNV  287 (339)
T ss_pred             CCCCCCHHHHHHHCCCCHHHHCCC----CCCCHHHHCCCCCEEEEECCCC--CCH---HHHHHHHHHHH-HCCCCCCCEE
T ss_conf             003650177776356248987289----8643134138766056606331--233---79999998788-5489985214


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             23553232243323587001306202210256777544110489706404742100000012222100123463356665
Q gi|254780802|r  577 FTQGMVVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLF  656 (869)
Q Consensus       577 ~~~G~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~  656 (869)
                      +.||+++.                                         .+|+|||||+||||+|.+++++||||+||+|
T Consensus       288 ~~hg~~l~-----------------------------------------~~G~KMSKS~GnvI~p~~~l~~y~~D~lRyy  326 (339)
T cd00818         288 IVHGFVLD-----------------------------------------EDGRKMSKSLGNVVDPQEVIDKYGADALRLW  326 (339)
T ss_pred             EECCEEEC-----------------------------------------CCCCCCCCCCCCCCCHHHHHHHCCCHHHHHH
T ss_conf             88984999-----------------------------------------9986627889987898999987694799999


Q ss_pred             HHHCCCCCCCCCC
Q ss_conf             5301332111113
Q gi|254780802|r  657 VLSDSPPDRDIIW  669 (869)
Q Consensus       657 ~~~~~~~~~d~~~  669 (869)
                      +++.+++++|.+|
T Consensus       327 l~~~~~~~~D~~F  339 (339)
T cd00818         327 VASSDVYAEDLRF  339 (339)
T ss_pred             HHHCCCCCCCCCC
T ss_conf             9916888889999


No 28 
>pfam09334 tRNA-synt_1g tRNA synthetases class I (M). This family includes methionyl tRNA synthetases.
Probab=100.00  E-value=0  Score=508.27  Aligned_cols=376  Identities=20%  Similarity=0.285  Sum_probs=253.7

Q ss_pred             EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             89980778978987400477977899999977718985567688140205899999980999999999999999999998
Q gi|254780802|r   36 YFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQLQS  115 (869)
Q Consensus        36 f~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~~~~  115 (869)
                      |+|+.||||+||.|||||+++++++|+++||+||+||+|+|++|+|+||+||+.+|++.+++|++++.++++.++++|++
T Consensus         1 ~~I~~ppP~~nG~lHiGHa~~~~~~Dvl~R~~r~~G~~V~~v~g~D~~g~~i~~ka~~~g~~~~e~~~~y~~~~~~~~~~   80 (388)
T pfam09334         1 FLITTALPYVNGPPHIGHLYTTIPADVYARYLRLRGYDVLFVTGTDEHGTKIELAAEKEGVTPQELVDRYHEEFKELFKK   80 (388)
T ss_pred             CEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             98937898888860022418899999999999956997071386485379999999984999999999999999999998


Q ss_pred             CCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             19176646982147735999999999999988963412213321477676778989843853345643223347523343
Q gi|254780802|r  116 IGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQVINGRGWRSDAPVEQRSLPQWFFK  195 (869)
Q Consensus       116 lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~pV~wcp~~~t~la~~Ev~~g~~~~~~~~v~~~~~~~~~~~  195 (869)
                      ||++.  ++.+.|+++.|.+.+++.|.+|+++|+||++.++|+|||+|+|.|+|.+|. |.|..|+.......       
T Consensus        81 lgi~~--D~~~~t~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~-g~cp~~~~~~~~~~-------  150 (388)
T pfam09334        81 FNISF--DDFIRTTSERHKELVQEFFLKLYEKGDIYEGEYEGWYCVSDERFLPDRYVE-GTCPYCGSEDARGD-------  150 (388)
T ss_pred             HCCCC--CCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCHHHHC-CCCCCCCCCCCCCC-------
T ss_conf             39967--878657984689999999875140681553241122366666666533307-54575575013664-------


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCHH
Q ss_conf             03444544321002255432222210001455767545355567777775136532001344432320033024432034
Q gi|254780802|r  196 ISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIRWEIVSNTIDQIEEILVYTTRPETIFGASFIAIAVDHSISEK  275 (869)
Q Consensus       196 ~~~~~~~l~~~~~~l~~~p~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~TtrPeTl~g~~~i~v~~~~~~~~~  275 (869)
                                                                       .+...          |.              
T Consensus       151 -------------------------------------------------~~e~~----------G~--------------  157 (388)
T pfam09334       151 -------------------------------------------------QCEVC----------GR--------------  157 (388)
T ss_pred             -------------------------------------------------HHHCC----------CC--------------
T ss_conf             -------------------------------------------------10023----------88--------------


Q ss_pred             HHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf             54131458999886531111245554302553237861037777741577631123454533322211134672110122
Q gi|254780802|r  276 LSCDNTDIKEFCDEEKQKGTSLSVLDKTEKKGIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIFGCPFADQRDMDFA  355 (869)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~P~~~~~~ipv~~~~~V~~~~GTG~V~~~P~h~~~D~~~~  355 (869)
                                          .++..            ...+|..              .-.|+                 
T Consensus       158 --------------------~~e~~------------~~~~~~~--------------~~~~~-----------------  174 (388)
T pfam09334       158 --------------------PLEPT------------ELINPRS--------------AISGS-----------------  174 (388)
T ss_pred             --------------------CCCHH------------HHCCCCC--------------CCCCC-----------------
T ss_conf             --------------------27867------------7417644--------------46799-----------------


Q ss_pred             HCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHH----HHHCCC
Q ss_conf             1035443210167765554222112101233445830001356466548889999740467752022211----100011
Q gi|254780802|r  356 KKYGLPIIPIMKRSINHSQDIEEGKAFSGDGIMINSSFLDGMTNTEALQAVMSHLEKQNIKNSPIGKRKI----NFRLRD  431 (869)
Q Consensus       356 ~k~glpi~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~l~~~~~~~~~~~~~~~----~~~l~D  431 (869)
                           ++.                         ......+.+...+..+.+.+++..........-++..    ...++|
T Consensus       175 -----~~~-------------------------~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~D  224 (388)
T pfam09334       175 -----TPE-------------------------LKEEEHYFFRLSKFQDKLLEWIKENPDEPPSNVNEVVLSWLKEGLKD  224 (388)
T ss_pred             -----CCE-------------------------EECCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf             -----754-------------------------43244123306889999999995499889889999999998668887


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             12211232222234223334684634742000111001000224542100245642110136764435643234566643
Q gi|254780802|r  432 WCISRQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTWKKIFCVKCGSEALRETDTMDTFVDSS  511 (869)
Q Consensus       432 W~ISRqr~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~dvld~w~dS~  511 (869)
                      ||||||++||+|+|-.  +                                                  ..++++|||+.
T Consensus       225 w~ISR~~~WG~~iP~~--~--------------------------------------------------~~~~~vW~da~  252 (388)
T pfam09334       225 LSITRDLDWGIPVPGD--P--------------------------------------------------GKVIYVWFDAL  252 (388)
T ss_pred             CCCCCCCCCCCCCCCC--C--------------------------------------------------CEEEEEECCCC
T ss_conf             6441247787504888--9--------------------------------------------------80687723565


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHCCCHH-----HHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             332233555654410135664114334-----401455544332023455532013478732232002222355323224
Q gi|254780802|r  512 WYYMRYMTPHAKDPINKELVRQWFPVD-----QYIGGIEHAVLHLLYARFFAHILKKIGYIEIDEPFKRLFTQGMVVHET  586 (869)
Q Consensus       512 ~~~~~~~~~~~~~~~~~e~~~~~~P~D-----~~i~g~d~~~~~~~~~r~~~~~l~~~g~~~~~~pf~~l~~~G~v~~~~  586 (869)
                      +.++......   ..+.+.++.|+|.+     +...|.|.+.-|   ..+|...+...+.    .+++.++.||++.   
T Consensus       253 ~~~~~~~~~~---~~~~~~~~~~w~~~~~~~~i~~~G~Di~~fh---~~~~~a~~~~~~~----~~~~~~~~~g~v~---  319 (388)
T pfam09334       253 IGYISATKYL---SGNPEKWKKFWADDPDTEIVHFIGKDIIRFH---AIYWPAMLMAAGL----PLPTQVFAHGWLT---  319 (388)
T ss_pred             CCCCCCCCCC---CCCHHHHHHHCCCCCCCEECCCCCCCCCCHH---HHHHHHHHHHCCC----CCCCEEEEEEEEE---
T ss_conf             5520002777---7781788864436776200010676414201---7899999983899----9886678757997---


Q ss_pred             CCCCCCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf             33235870013062022102567775441104897064047421000000122221001234633566655301332111
Q gi|254780802|r  587 YYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRD  666 (869)
Q Consensus       587 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~~~~~~~~~~d  666 (869)
                                                             .+|+|||||+||+|+|.+++++||||+|||||++.++.++|
T Consensus       320 ---------------------------------------~~G~KMSKSlGN~i~~~d~i~~ygaDalR~~L~~~~~~~~d  360 (388)
T pfam09334       320 ---------------------------------------VEGGKMSKSRGNVVDPDELLDRYGVDALRYYLAREAPEGKD  360 (388)
T ss_pred             ---------------------------------------ECCEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCC
T ss_conf             ---------------------------------------59944478699878889999887828999999953999899


Q ss_pred             CCCCCCCHHHHHH--HHHHHHHHHHHH
Q ss_conf             1134321011455--677889999976
Q gi|254780802|r  667 IIWSNKGVDSTYQ--FIQQIWRLIYNA  691 (869)
Q Consensus       667 ~~~s~~~i~~~~r--fl~kl~~l~~~~  691 (869)
                      ++||++.+...++  |++++||++...
T Consensus       361 ~~Fs~~~~~~~~n~~~~~kl~N~~~r~  387 (388)
T pfam09334       361 GDFSWEDFVERVNSELANDLGNLVNRT  387 (388)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             989999999998799888776577330


No 29 
>cd00668 Ile_Leu_Val_MetRS_core This is the catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.  Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=100.00  E-value=0  Score=508.33  Aligned_cols=324  Identities=37%  Similarity=0.721  Sum_probs=253.3

Q ss_pred             CEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCC----------CHHHHHHH
Q ss_conf             38998077897898740047797789999997771898556768814020589999998099----------99999999
Q gi|254780802|r   35 KYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNV----------HPKMWTYQ  104 (869)
Q Consensus        35 kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~----------~~~~~~~~  104 (869)
                      ||+|++|||||||+||+||+++++++|+++||+||+||+|+|++||||||+||+.+|++.+.          +|++++.+
T Consensus         1 ~~~i~~~~P~~nG~LHiGHar~~~~~Dv~~R~~r~~G~~V~~v~g~D~~G~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~   80 (334)
T cd00668           1 KFYITTPPPYVNGVLHLGHALTYTLKDIIARYKRMRGYNVLFPPGWDEHGLPIENKAEKEGGIEGKKEEFLEDPKEWVDK   80 (334)
T ss_pred             CEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf             98995599888886146675989999999999981699536068668656899999999687121057777539999999


Q ss_pred             HHHHHHHHHHHCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCHHHHHCCCCCCCCCCC
Q ss_conf             99999999998191766469821477359999999999999889634122133214776767789898438533456432
Q gi|254780802|r  105 NIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQVINGRGWRSDAPV  184 (869)
Q Consensus       105 ~i~~~k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~pV~wcp~~~t~la~~Ev~~g~~~~~~~~v  184 (869)
                      +++.++++|++||+++||+++|.|++|.|.++++|+|.+|+++|+||++.++|..|                        
T Consensus        81 ~~~~~~~~~~~lgi~~D~~~~~~T~~~~~~~~v~~~~~~L~~~G~iy~~~~~v~~~------------------------  136 (334)
T cd00668          81 YIEEFKEQFKRLGISFDWDRFYRTTDPEYYEAVQWIFLKLYEKGLIYRGERPVRLT------------------------  136 (334)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCC------------------------
T ss_conf             99999999999689768787611599999999999999999879989505667756------------------------


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEE
Q ss_conf             23347523343034445443210022554322222100014557675453555677777751365320013444323200
Q gi|254780802|r  185 EQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIRWEIVSNTIDQIEEILVYTTRPETIFGASFI  264 (869)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~TtrPeTl~g~~~i  264 (869)
                           .+|||+++.+++.+.+.+..+                                                      
T Consensus       137 -----~~~f~~~~~~~~~l~~~~~~~------------------------------------------------------  157 (334)
T cd00668         137 -----EQWFLKLSKLKDRLLEALEKN------------------------------------------------------  157 (334)
T ss_pred             -----CEEEEEHHHHHHHHHHHHHHC------------------------------------------------------
T ss_conf             -----547778899999999999848------------------------------------------------------


Q ss_pred             EEECCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf             33024432034541314589998865311112455543025532378610377777415776311234545333222111
Q gi|254780802|r  265 AIAVDHSISEKLSCDNTDIKEFCDEEKQKGTSLSVLDKTEKKGIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIFGC  344 (869)
Q Consensus       265 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~P~~~~~~ipv~~~~~V~~~~GTG~V~~~  344 (869)
                                                                          .        ++                 
T Consensus       158 ----------------------------------------------------~--------~~-----------------  160 (334)
T cd00668         158 ----------------------------------------------------E--------IW-----------------  160 (334)
T ss_pred             ----------------------------------------------------C--------CC-----------------
T ss_conf             ----------------------------------------------------9--------87-----------------


Q ss_pred             CCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf             34672110122103544321016776555422211210123344583000135646654888999974046775202221
Q gi|254780802|r  345 PFADQRDMDFAKKYGLPIIPIMKRSINHSQDIEEGKAFSGDGIMINSSFLDGMTNTEALQAVMSHLEKQNIKNSPIGKRK  424 (869)
Q Consensus       345 P~h~~~D~~~~~k~glpi~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~l~~~~~~~~~~~~~~  424 (869)
                      |                                                      +..++.+..++              
T Consensus       161 p------------------------------------------------------~~~~~~~~~~l--------------  172 (334)
T cd00668         161 P------------------------------------------------------ENVRNRFLNWL--------------  172 (334)
T ss_pred             C------------------------------------------------------HHHHHHHHHHH--------------
T ss_conf             7------------------------------------------------------89999999887--------------


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             11000111221123222223422333468463474200011100100022454210024564211013676443564323
Q gi|254780802|r  425 INFRLRDWCISRQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTWKKIFCVKCGSEALRETDTM  504 (869)
Q Consensus       425 ~~~~l~DW~ISRqr~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~dvl  504 (869)
                       ...++||||||||+||+|+|+|+|++|+..                                  +..++....++.+++
T Consensus       173 -~~~~~d~~isR~~~wG~~~P~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~  217 (334)
T cd00668         173 -ENGLRDWCISRQRYWGIPIPAWYCEDCGEV----------------------------------CPKCGKELKRETDVL  217 (334)
T ss_pred             -HCCCCCCEEEEECCCCCCCCEEECCCCCCC----------------------------------CCCCCCCCCCCCCCE
T ss_conf             -467877525733467875561332567755----------------------------------666531136876534


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             45666433322335556544101356641143344014555443320234555320134787322320022223553232
Q gi|254780802|r  505 DTFVDSSWYYMRYMTPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIGYIEIDEPFKRLFTQGMVVH  584 (869)
Q Consensus       505 d~w~dS~~~~~~~~~~~~~~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~g~~~~~~pf~~l~~~G~v~~  584 (869)
                      |+||||+|.++.....+.+... ...+..++|.|+..+|.|++..|..+.......+.      ...||+.+++||+++.
T Consensus       218 ~~Wfds~~~~~~~~~~~~~~~~-~~~~~~~~~~di~~~G~D~~~~h~~~~~a~~~a~~------~~~~~~~~~~~g~~~~  290 (334)
T cd00668         218 DVWFDSGIGYLSALGYPNEEEG-FEEFEYWYPADLHVIGKDIIRFHLIYWPAMLLALF------GKPPPKNVLVHGLVLD  290 (334)
T ss_pred             EEEECCCCCCCCCCCCCCCCCH-HHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCC------CCCCHHHEEECCCEEC
T ss_conf             4664175654322678643325-66876179816987156136329999999999844------9850877574201983


Q ss_pred             CCCCCCCCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf             24332358700130620221025677754411048970640474210000001222210012346335666553013321
Q gi|254780802|r  585 ETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPD  664 (869)
Q Consensus       585 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~~~~~~~~~  664 (869)
                                                               .+|+|||||+||+|++.+++++||||++|||+++.+|.+
T Consensus       291 -----------------------------------------~~G~KMSKS~GN~i~~~~~l~~~g~D~lR~~l~~~~~~~  329 (334)
T cd00668         291 -----------------------------------------EGGRKMSKSLGNVVDPLDAIEKYGADALRYYLLSAAPEG  329 (334)
T ss_pred             -----------------------------------------CCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCC
T ss_conf             -----------------------------------------899573886998889899998759489999999429988


Q ss_pred             CCCCC
Q ss_conf             11113
Q gi|254780802|r  665 RDIIW  669 (869)
Q Consensus       665 ~d~~~  669 (869)
                      +|.+|
T Consensus       330 ~d~~f  334 (334)
T cd00668         330 EDLNF  334 (334)
T ss_pred             CCCCC
T ss_conf             89998


No 30 
>TIGR00398 metG methionyl-tRNA synthetase; InterPro: IPR002304   The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases .    Methionyl-tRNA synthetase (6.1.1.10 from EC) is an alpha 2 dimer that belongs to class Ia. In some species (archaea, eubacteria and eukaryota) a coding sequence, similar to the C-term end of MetRS, is present as an independent gene which is a tRNA binding domain as a dimer. In eubacteria, MetRS can also be splitted in two sub-classes corresponding to the presence of one or two CXXC domain specific to zinc binding. The crystal structures of a number of methionyl-tRNA synthases are known , , .; GO: 0000166 nucleotide binding, 0004825 methionine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006431 methionyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=100.00  E-value=0  Score=492.09  Aligned_cols=488  Identities=22%  Similarity=0.331  Sum_probs=333.0

Q ss_pred             EEEEECCCCCCCCCCCCHHH-HHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCC-HHHHHHHHHHHHHHHH
Q ss_conf             89980778978987400477-977899999977718985567688140205899999980999-9999999999999999
Q gi|254780802|r   36 YFVLEMFPYPSGNIHMGHLR-NYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVH-PKMWTYQNIKVMRKQL  113 (869)
Q Consensus        36 f~i~~~pPy~nG~lHiGH~~-~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~-~~~~~~~~i~~~k~~~  113 (869)
                      ++||.|-|||||.+|+||++ |++++||++||+||+|++|+|..|.|+||+||+.+|++.|.+ |++++.++.+.+++++
T Consensus         1 ~liTtpl~Y~Ng~pHlGH~~st~~~AD~~~RY~~~~G~~v~f~cGTDEHG~kI~~~A~~~g~tqP~~~vd~~~~~f~~~~   80 (573)
T TIGR00398         1 ILITTPLPYANGKPHLGHAYSTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTQPKELVDKYHEEFKKLW   80 (573)
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf             91005776678711210366777899999999852897478985134468788886987089964899999999999999


Q ss_pred             HHCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCHHHHH----CCCCCCCCCCCCCCCC
Q ss_conf             981917664698214773599999999999998896341221332147767677898984----3853345643223347
Q gi|254780802|r  114 QSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQVI----NGRGWRSDAPVEQRSL  189 (869)
Q Consensus       114 ~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~pV~wcp~~~t~la~~Ev~----~g~~~~~~~~v~~~~~  189 (869)
                      +.++++.|  +--+|+|+...+.|+-.|.+|++||+||.+..--.|||.|++=++|-++.    +|.|..|+..-...+.
T Consensus        81 ~~lnI~fD--~F~RTTd~~H~~~v~~~f~~L~~nGyIY~~~~~g~YC~~c~~Fl~dr~~~~~yv~g~CP~c~~~~~~gd~  158 (573)
T TIGR00398        81 KWLNISFD--RFIRTTDEEHKEIVQKIFQKLLENGYIYEKEIKGLYCPECESFLPDRKLVDDYVEGTCPKCGSEDARGDH  158 (573)
T ss_pred             HHHCCCCC--CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf             87284567--6546768888999999999987537741100353234756653622320013346748868877777877


Q ss_pred             CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECC
Q ss_conf             52334303444544321002255432222210001455767545355567777775136532001344432320033024
Q gi|254780802|r  190 PQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIRWEIVSNTIDQIEEILVYTTRPETIFGASFIAIAVD  269 (869)
Q Consensus       190 ~~~~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~TtrPeTl~g~~~i~v~~~  269 (869)
                                                                              +.-+-.++-|--            
T Consensus       159 --------------------------------------------------------c~~Cg~~leP~~------------  170 (573)
T TIGR00398       159 --------------------------------------------------------CEVCGRHLEPFE------------  170 (573)
T ss_pred             --------------------------------------------------------CCCCCCCCCCCH------------
T ss_conf             --------------------------------------------------------554655368500------------


Q ss_pred             CCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             43203454131458999886531111245554302553237861037777741577631123454533322211134672
Q gi|254780802|r  270 HSISEKLSCDNTDIKEFCDEEKQKGTSLSVLDKTEKKGIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIFGCPFADQ  349 (869)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~P~~~~~~ipv~~~~~V~~~~GTG~V~~~P~h~~  349 (869)
                                                                  .++|   +-.+   .+.-                  
T Consensus       171 --------------------------------------------Li~P---~c~~---~~~~------------------  182 (573)
T TIGR00398       171 --------------------------------------------LINP---RCVI---CKNK------------------  182 (573)
T ss_pred             --------------------------------------------HCCC---CEEE---ECCE------------------
T ss_conf             --------------------------------------------1187---0255---4880------------------


Q ss_pred             CCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCH--HHHH---
Q ss_conf             11012210354432101677655542221121012334458300013564665488899997404677520--2221---
Q gi|254780802|r  350 RDMDFAKKYGLPIIPIMKRSINHSQDIEEGKAFSGDGIMINSSFLDGMTNTEALQAVMSHLEKQNIKNSPI--GKRK---  424 (869)
Q Consensus       350 ~D~~~~~k~glpi~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~l~~~~~~~~~~--~~~~---  424 (869)
                                    +++.+...+                    |   .....-.+.+.+++.+..-...+.  .++.   
T Consensus       183 --------------~~~~~~~hy--------------------F---f~L~~~~~~l~~~~~~~~~~~~~~~~~~n~~~~  225 (573)
T TIGR00398       183 --------------PELRDSEHY--------------------F---FRLSAFEKELEEWIKKNPESKSPASNVKNVAKQ  225 (573)
T ss_pred             --------------EEEECCCCC--------------------C---CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf             --------------025135452--------------------2---353688899999861488424218999999889


Q ss_pred             --HHHHCCCCCCCCCCC---CCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf             --110001112211232---222234223334684634742000111001000224542100245642110136764435
Q gi|254780802|r  425 --INFRLRDWCISRQRS---WGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTWKKIFCVKCGSEALR  499 (869)
Q Consensus       425 --~~~~l~DW~ISRqr~---WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r  499 (869)
                        +.-.|+||||||+..   ||+|+|-=..+                                                 
T Consensus       226 ~~~~~GL~D~~ItR~~~~lkWG~pvP~~~~p-------------------------------------------------  256 (573)
T TIGR00398       226 NWIKGGLKDLAITRDLVDLKWGIPVPNDGAP-------------------------------------------------  256 (573)
T ss_pred             HHHCCCCCCCEEECCCCCCCCCCCCCCCCCC-------------------------------------------------
T ss_conf             9850687430110364412115317898987-------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             64323456664333223355565441013566411433440145554433202345553201347873223200222235
Q gi|254780802|r  500 ETDTMDTFVDSSWYYMRYMTPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIGYIEIDEPFKRLFTQ  579 (869)
Q Consensus       500 ~~dvld~w~dS~~~~~~~~~~~~~~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~g~~~~~~pf~~l~~~  579 (869)
                       .-|+-||||.-+-|+.....-....-..+.+++||+.+-    .+.-++|+            +|-  -...|+.+|..
T Consensus       257 -~~~~YVW~DAl~gYiss~~~~~~~~~~~~~~~~~W~~~~----~~~~~~Hf------------IGK--DI~~FH~iyWP  317 (573)
T TIGR00398       257 -NKVVYVWFDALIGYISSLKALGIEKGLTEDWKKWWNNNS----EDAELIHF------------IGK--DIVRFHTIYWP  317 (573)
T ss_pred             -CCEEEEEECHHHHHHHHHHHCCCCCCCCHHHHHHCCCCC----CCCEEEEE------------ECC--CCCCHHHHHHH
T ss_conf             -967998720345699997521335687578998626888----65027888------------424--12020333445


Q ss_pred             CCCCCCCCCCCCCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCC-CCCC-CCHHHHHHHH
Q ss_conf             5323224332358700130620221025677754411048970640474210000001222210-0123-4633566655
Q gi|254780802|r  580 GMVVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMK-VIKS-YGADTARLFV  657 (869)
Q Consensus       580 G~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~-~i~~-yGaD~lRl~~  657 (869)
                      +|.+..+        .|+-.|..|              .. ++.+..+|+|||||+||||+|.+ +++. ||+|.+|+|+
T Consensus       318 a~L~~~~--------eN~~lP~q~--------------~~-hGyl~~eG~KMSKS~G~vv~~~~~~~~~~~g~D~lRYYl  374 (573)
T TIGR00398       318 AMLMGLG--------ENLPLPTQV--------------FA-HGYLTVEGQKMSKSLGNVVDPEDDLLARGYGADILRYYL  374 (573)
T ss_pred             HHHHHCC--------CHHHHHHHH--------------EE-EEEEEECCEEECCCCCCEECHHHHHHHCCCCHHHHHHHH
T ss_conf             8885112--------100212132--------------43-016884784432324753232178764478805788899


Q ss_pred             HHCCCCCCCCCCCCCCH---------HHHHHHHHHHHHHHHHHHCCCC-----------------CCCCHHHHHHHHHHH
Q ss_conf             30133211111343210---------1145567788999997630246-----------------678975699999999
Q gi|254780802|r  658 LSDSPPDRDIIWSNKGV---------DSTYQFIQQIWRLIYNAKDELQ-----------------TSSTKKDISLISKST  711 (869)
Q Consensus       658 ~~~~~~~~d~~~s~~~i---------~~~~rfl~kl~~l~~~~~~~~~-----------------~~~~~~D~~ils~~~  711 (869)
                      +...+.++|.+||++.+         ....||++|+..++....++.-                 +...+.|..++..++
T Consensus       375 ~~~~~~~~D~~F~~~~f~~r~N~~L~n~lGNl~nR~~~f~~k~f~g~~~~~~~~nfqfqeifqneP~l~~~~~~l~~~~~  454 (573)
T TIGR00398       375 LKEVPLGKDGDFSWEDFVERVNADLANDLGNLLNRTLGFIKKYFNGVLPSVDETNFQFQEIFQNEPKLTEEDKELLKKIN  454 (573)
T ss_pred             HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf             86424344765688999999768877655589999999998873562110101234566665037652235668999999


Q ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC------CCHHHHHHH---HHHHHHHHHCCCHHHHHHHH
Q ss_conf             999999999881688999999999999999999862110002------217999999---99999999722343899999
Q gi|254780802|r  712 KFLERIEENYQNLSFNKAVANIHELVNVISKPLMEIAKKKSN------ADRISTIRY---ILEKLIIMMSPMIPHLAEEC  782 (869)
Q Consensus       712 ~~i~~v~~~~e~~~f~~ai~~i~~f~n~ls~~y~~~~k~~~~------~~~~~~l~~---vl~~l~~lLaPi~PhiaEEi  782 (869)
                      .+.+.+.+++++++|++|+..|+.++...|++..+.......      ....+++..   +++.+..||.||||.+|+.|
T Consensus       455 ~~~~~~~~~~~~~~f~~Al~~~~~L~~~gNkyi~~~~PW~l~k~~~~~~~l~~~~~~~~e~~~~l~~Ll~P~~P~~~~k~  534 (573)
T TIGR00398       455 ETLEQIDKALESFEFRKALEEILKLADRGNKYIDDNEPWELAKQSEKLKELLAVCSLVAELIRVLSILLYPFMPKLSEKI  534 (573)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             99999999886203899999999999986147652388713257067999999999999999999998424102478999


Q ss_pred             HHHCCCC
Q ss_conf             9982899
Q gi|254780802|r  783 WQLLGNA  789 (869)
Q Consensus       783 w~~Lg~~  789 (869)
                      .+.||-+
T Consensus       535 ~~~~n~~  541 (573)
T TIGR00398       535 LKLLNFE  541 (573)
T ss_pred             HHHHCCC
T ss_conf             9983887


No 31 
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00  E-value=0  Score=488.28  Aligned_cols=488  Identities=23%  Similarity=0.341  Sum_probs=337.0

Q ss_pred             CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             88838998077897898740047797789999997771898556768814020589999998099999999999999999
Q gi|254780802|r   32 NKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRK  111 (869)
Q Consensus        32 ~~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~  111 (869)
                      ...+|+||.|.|||||.||+||+.+++.+||+|||+||+|++|+|..|.|.||+||+..|++.|++|++++.++.+.+++
T Consensus         3 ~~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~   82 (558)
T COG0143           3 MMKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKE   82 (558)
T ss_pred             CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             78738995589889998641367888789999999982697589995147877788999998599989999999999999


Q ss_pred             HHHHCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             99981917664698214773599999999999998896341221332147767677898984385334564322334752
Q gi|254780802|r  112 QLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQVINGRGWRSDAPVEQRSLPQ  191 (869)
Q Consensus       112 ~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~pV~wcp~~~t~la~~Ev~~g~~~~~~~~v~~~~~~~  191 (869)
                      .++.++++.|  +-.+|+++.+.+++|..|.+|+++|+||.+..++.|||+|++-+.|.+|+ |.|..|+....+.+   
T Consensus        83 ~~~~l~IsfD--~F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~-g~cp~cg~~~a~GD---  156 (558)
T COG0143          83 LFKALNISFD--NFIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVE-GTCPKCGGEDARGD---  156 (558)
T ss_pred             HHHHHCCCCC--EECCCCCHHHHHHHHHHHHHHHHCCCEECCCEEEEECCCCCCCCCCHHEE-CCCCCCCCCCCCCC---
T ss_conf             9998098543--00168977799999999999997898731443564735435645621020-55898675345764---


Q ss_pred             CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCC
Q ss_conf             33430344454432100225543222221000145576754535556777777513653200134443232003302443
Q gi|254780802|r  192 WFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIRWEIVSNTIDQIEEILVYTTRPETIFGASFIAIAVDHS  271 (869)
Q Consensus       192 ~~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~TtrPeTl~g~~~i~v~~~~~  271 (869)
                                                   ++                        +-+-.+.-|..              
T Consensus       157 -----------------------------~C------------------------e~Cg~~~~P~~--------------  169 (558)
T COG0143         157 -----------------------------QC------------------------ENCGRTLDPTE--------------  169 (558)
T ss_pred             -----------------------------HH------------------------HHCCCCCCCHH--------------
T ss_conf             -----------------------------34------------------------32267579212--------------


Q ss_pred             CCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             20345413145899988653111124555430255323786103777774157763112345453332221113467211
Q gi|254780802|r  272 ISEKLSCDNTDIKEFCDEEKQKGTSLSVLDKTEKKGIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIFGCPFADQRD  351 (869)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~P~~~~~~ipv~~~~~V~~~~GTG~V~~~P~h~~~D  351 (869)
                                                                .++|..      ++.+.-  |      +          
T Consensus       170 ------------------------------------------l~~p~~------~i~g~~--p------~----------  183 (558)
T COG0143         170 ------------------------------------------LINPVC------VISGAT--P------E----------  183 (558)
T ss_pred             ------------------------------------------CCCCEE------EEECCC--C------C----------
T ss_conf             ------------------------------------------179816------864797--6------4----------


Q ss_pred             CHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHH--HH---
Q ss_conf             0122103544321016776555422211210123344583000135646654888999974046775202221--11---
Q gi|254780802|r  352 MDFAKKYGLPIIPIMKRSINHSQDIEEGKAFSGDGIMINSSFLDGMTNTEALQAVMSHLEKQNIKNSPIGKRK--IN---  426 (869)
Q Consensus       352 ~~~~~k~glpi~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~l~~~~~~~~~~~~~~--~~---  426 (869)
                                    +.+.                    .+.+   +...+....+.+++++......|.+++.  .+   
T Consensus       184 --------------~r~~--------------------~hyF---f~L~~~~~~L~~~~~~~~~~~~p~~~~ne~~~~i~  226 (558)
T COG0143         184 --------------VREE--------------------EHYF---FRLSKFQDKLLEWYESNPDFIWPANRRNEVLNFLK  226 (558)
T ss_pred             --------------CCCC--------------------EEEE---EEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf             --------------3354--------------------0599---88798699999999739654588689999999997


Q ss_pred             HHCCCCCCCC-CCCCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             0001112211-232222234223334684634742000111001000224542100245642110136764435643234
Q gi|254780802|r  427 FRLRDWCISR-QRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTWKKIFCVKCGSEALRETDTMD  505 (869)
Q Consensus       427 ~~l~DW~ISR-qr~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~dvld  505 (869)
                      -.|+||+||| ...||+|+|-  .+  +                                                -++-
T Consensus       227 ~GL~d~~IsR~~~~WGipvP~--~p--~------------------------------------------------kv~Y  254 (558)
T COG0143         227 EGLKDLSITRTDLDWGIPVPG--DP--G------------------------------------------------KVIY  254 (558)
T ss_pred             CCCCCCCEECCCCCCCCCCCC--CC--C------------------------------------------------CEEE
T ss_conf             668664314589887725799--99--8------------------------------------------------7799


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHH----HHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             566643332233555654410135664114334----4014555443320234555320134787322320022223553
Q gi|254780802|r  506 TFVDSSWYYMRYMTPHAKDPINKELVRQWFPVD----QYIGGIEHAVLHLLYARFFAHILKKIGYIEIDEPFKRLFTQGM  581 (869)
Q Consensus       506 ~w~dS~~~~~~~~~~~~~~~~~~e~~~~~~P~D----~~i~g~d~~~~~~~~~r~~~~~l~~~g~~~~~~pf~~l~~~G~  581 (869)
                      ||||.-+-|+..+.-... ..+.+.+++|+|.|    +.+=|+|-+.-   ++-+|-..|+..+.-    ..+.++.|| 
T Consensus       255 VWfDAligYisa~~~~~~-~~~~~~~~~~W~~~~~e~vhfIGKDii~F---Hav~wPamL~~~~~~----lP~~i~ahg-  325 (558)
T COG0143         255 VWFDALIGYISALGELAE-IGDDEDFKKFWPADDTELVHFIGKDIIRF---HAVYWPAMLMAAGLP----LPTRIFAHG-  325 (558)
T ss_pred             EEECCHHHHHHHHCCHHC-CCCHHHHHHHCCCCCCEEEEEECCCCCCC---HHHHHHHHHHHCCCC----CCCEEEEEE-
T ss_conf             963448899999541210-58767898637788845999962456743---245789999738999----887798401-


Q ss_pred             CCCCCCCCCCCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf             23224332358700130620221025677754411048970640474210000001222210012346335666553013
Q gi|254780802|r  582 VVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDS  661 (869)
Q Consensus       582 v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~~~~~~  661 (869)
                                                               .+..+|+|||||+||+|+|.++++.||+|.+|+|++...
T Consensus       326 -----------------------------------------~l~~~G~KmSKSrG~~V~~~~~~~~~~~D~lRYyL~~~~  364 (558)
T COG0143         326 -----------------------------------------FLTLEGQKMSKSRGNVVDPDELLEQYGVDALRYYLAREL  364 (558)
T ss_pred             -----------------------------------------EEEECCCCCCCCCCCEEEHHHHHHHCCCHHHHHHHHHHC
T ss_conf             -----------------------------------------399779412442881871799998748238579888737


Q ss_pred             CCCCCCCCCCCCHH---------HHHHHHHHHHHHHHHHHCCCCCCC----CHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf             32111113432101---------145567788999997630246678----97569999999999999999988168899
Q gi|254780802|r  662 PPDRDIIWSNKGVD---------STYQFIQQIWRLIYNAKDELQTSS----TKKDISLISKSTKFLERIEENYQNLSFNK  728 (869)
Q Consensus       662 ~~~~d~~~s~~~i~---------~~~rfl~kl~~l~~~~~~~~~~~~----~~~D~~ils~~~~~i~~v~~~~e~~~f~~  728 (869)
                      |.++|.+||++.+.         ...++++|+..++....++..+..    ...|..++..+..+.+.+.++|++++|++
T Consensus       365 p~~~D~dFs~~~f~~rvN~dL~n~lgNl~~R~l~fi~k~~~g~vp~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~  444 (558)
T COG0143         365 PEGSDGDFSWEDFVERVNADLANKLGNLANRTLGFINKYFDGVVPAAGAPDLEEDEELLALAREALEAVAEAMEKYEFRK  444 (558)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             78888888999999999899887888999999999975259968865455534569999999999999999998625999


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCC----CCH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEECCC
Q ss_conf             9999999999999999862110002----217----99999999999999722343899999998289983551788
Q gi|254780802|r  729 AVANIHELVNVISKPLMEIAKKKSN----ADR----ISTIRYILEKLIIMMSPMIPHLAEECWQLLGNAGLVAQQKW  797 (869)
Q Consensus       729 ai~~i~~f~n~ls~~y~~~~k~~~~----~~~----~~~l~~vl~~l~~lLaPi~PhiaEEiw~~Lg~~~~i~~~~W  797 (869)
                      |+..+++++...++|..+.......    .++    ..+..++++.+..||+||||.+|+++|++||.+.......|
T Consensus       445 Al~~i~~l~~~~N~Yi~~~~PW~l~k~~~~~~~~~vl~~~~~~~r~la~ll~P~mP~~a~ki~~~L~~~~~~~~~~~  521 (558)
T COG0143         445 ALEEIMALASRANKYIDEQAPWKLAKEDKRERLATVLYLALELVRVLAILLYPFMPETAEKIWDQLGLEEDARNFTW  521 (558)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCHH
T ss_conf             99999999999988764289802320472999999999999999999998158686029999998288633210003


No 32 
>cd00814 MetRS_core This is the catalytic core domain of methionine tRNA synthetase (MetRS). This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and a anti-codon binding domain functions as a monomer. However, in some species, the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.  As a result of a deletion event, MetRS has a significantly shorter core domain insertion that IleRS, ValRS, and LeuR.  Consequently, the MetRS insertion lacks the editing function.
Probab=100.00  E-value=0  Score=351.01  Aligned_cols=132  Identities=24%  Similarity=0.333  Sum_probs=125.6

Q ss_pred             CEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             38998077897898740047797789999997771898556768814020589999998099999999999999999999
Q gi|254780802|r   35 KYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQLQ  114 (869)
Q Consensus        35 kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~~~  114 (869)
                      ||+|+.||||+||.||+||++++++.|+++||+||+||+|.|..|.|.||.+|+..|++.++++.++++++++.++++|+
T Consensus         1 ~~~v~~~~Ptv~g~lHiGHar~~v~~Dil~R~lr~~G~~V~~vt~~Dd~~~kIi~kA~~~g~~~~el~~~y~~~~~~~~~   80 (319)
T cd00814           1 KVLITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKELFK   80 (319)
T ss_pred             CEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf             98996899878898553306889999999999996599569968777870899999998399879999999999999999


Q ss_pred             HCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCC
Q ss_conf             819176646982147735999999999999988963412213321477676778
Q gi|254780802|r  115 SIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLA  168 (869)
Q Consensus       115 ~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~pV~wcp~~~t~la  168 (869)
                      +||+.  ++....|+++.+...++..|.+|.++|++|++...+.|||.|+..++
T Consensus        81 ~L~I~--~d~~~r~~~~~~~~~v~~~i~~L~~~G~~y~~~~~~~y~~~~~~~~~  132 (319)
T cd00814          81 WLNIS--FDYFGRTTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLP  132 (319)
T ss_pred             HCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCEEEECCCCCCCCC
T ss_conf             84998--78676678806899999999999978988884102636588764564


No 33 
>KOG0436 consensus
Probab=100.00  E-value=0  Score=335.43  Aligned_cols=471  Identities=22%  Similarity=0.302  Sum_probs=318.4

Q ss_pred             CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             88838998077897898740047797789999997771898556768814020589999998099999999999999999
Q gi|254780802|r   32 NKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRK  111 (869)
Q Consensus        32 ~~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~  111 (869)
                      +.+.|++|.|-=|+|..+|+||+++-.++|+++||||++|..|.|.-|.|-|||-|+.+|.-+|..|.+.....-+.+++
T Consensus        37 ~~~~~~lTTPifYvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatnG~~P~e~cDr~s~~f~q  116 (578)
T KOG0436          37 EGETFVLTTPIFYVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATNGRNPPELCDRISQSFRQ  116 (578)
T ss_pred             CCCEEEEECCEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             78505984551314788514579999999999999863588068603777544224336865599907888665199999


Q ss_pred             HHHHCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             99981917664698214773599999999999998896341221332147767677898984385334564322334752
Q gi|254780802|r  112 QLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQVINGRGWRSDAPVEQRSLPQ  191 (869)
Q Consensus       112 ~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~pV~wcp~~~t~la~~Ev~~g~~~~~~~~v~~~~~~~  191 (869)
                      .++..|+.++  +-.+|+||...+.||.....+..+|+||+|.|--.||-.|+|-..+.+|...-|.-            
T Consensus       117 L~k~~gi~yt--~FIRTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k~p~~~------------  182 (578)
T KOG0436         117 LWKDAGIAYT--KFIRTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVLKNPCPP------------  182 (578)
T ss_pred             HHHHHCCCHH--HEEECCCCHHHHHHHHHHHHHHHCCCEEEECCCCEEECCCCCCCCHHHHHCCCCCC------------
T ss_conf             9998296334--21224891089999999999986783652023516860530028788871388999------------


Q ss_pred             CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCC
Q ss_conf             33430344454432100225543222221000145576754535556777777513653200134443232003302443
Q gi|254780802|r  192 WFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIRWEIVSNTIDQIEEILVYTTRPETIFGASFIAIAVDHS  271 (869)
Q Consensus       192 ~~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~TtrPeTl~g~~~i~v~~~~~  271 (869)
                                                        |+....                        |+  |+..+|-. |..
T Consensus       183 ----------------------------------gk~vsm------------------------Es--g~~vv~~k-E~N  201 (578)
T KOG0436         183 ----------------------------------GKVVSM------------------------ES--GNPVVWRK-EDN  201 (578)
T ss_pred             ----------------------------------CCEEEE------------------------CC--CCCEEEEC-CCC
T ss_conf             ----------------------------------854540------------------------46--89426761-565


Q ss_pred             CCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             20345413145899988653111124555430255323786103777774157763112345453332221113467211
Q gi|254780802|r  272 ISEKLSCDNTDIKEFCDEEKQKGTSLSVLDKTEKKGIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIFGCPFADQRD  351 (869)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~P~~~~~~ipv~~~~~V~~~~GTG~V~~~P~h~~~D  351 (869)
                      |.-.+.....                     .     +.-...+||=            ||.|+         +      
T Consensus       202 Y~FrLSkfqk---------------------~-----l~d~lrkNP~------------fvqPs---------~------  228 (578)
T KOG0436         202 YFFRLSKFQK---------------------P-----LEDHLRKNPR------------FVQPS---------Y------  228 (578)
T ss_pred             EEEEHHHHHH---------------------H-----HHHHHHCCCC------------CCCCH---------H------
T ss_conf             0100875512---------------------8-----9999844997------------46760---------7------


Q ss_pred             CHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCC
Q ss_conf             01221035443210167765554222112101233445830001356466548889999740467752022211100011
Q gi|254780802|r  352 MDFAKKYGLPIIPIMKRSINHSQDIEEGKAFSGDGIMINSSFLDGMTNTEALQAVMSHLEKQNIKNSPIGKRKINFRLRD  431 (869)
Q Consensus       352 ~~~~~k~glpi~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~D  431 (869)
                                                                        ....+.++++..               |+|
T Consensus       229 --------------------------------------------------~~~qVl~~lktg---------------lpD  243 (578)
T KOG0436         229 --------------------------------------------------FHNQVLSWLKTG---------------LPD  243 (578)
T ss_pred             --------------------------------------------------HHHHHHHHHHCC---------------CCC
T ss_conf             --------------------------------------------------788999999737---------------986


Q ss_pred             CCCCC--CC-CCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             12211--23-2222234223334684634742000111001000224542100245642110136764435643234566
Q gi|254780802|r  432 WCISR--QR-SWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTWKKIFCVKCGSEALRETDTMDTFV  508 (869)
Q Consensus       432 W~ISR--qr-~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~dvld~w~  508 (869)
                      --|||  +| .||+|.|-   ++..                                                 ++-+||
T Consensus       244 lSISRpsarl~WGIPvP~---ddsQ-------------------------------------------------tIYVWf  271 (578)
T KOG0436         244 LSISRPSARLDWGIPVPG---DDSQ-------------------------------------------------TIYVWF  271 (578)
T ss_pred             CCCCCHHHHCCCCCCCCC---CCCC-------------------------------------------------EEEEEH
T ss_conf             532570330134888899---9862-------------------------------------------------698759


Q ss_pred             CCCCCCCCCC-CCCCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             6433322335-556544101356641143344014555443320234555320134787322320022223553232243
Q gi|254780802|r  509 DSSWYYMRYM-TPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIGYIEIDEPFKRLFTQGMVVHETY  587 (869)
Q Consensus       509 dS~~~~~~~~-~~~~~~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~g~~~~~~pf~~l~~~G~v~~~~~  587 (869)
                      |.-.-|+.-. .|..+. .-+..+..|||+...+-|+|-.--|   +-.|...|+..|.-    +-+.++.||+..    
T Consensus       272 DAL~nYiSvig~~~~~~-N~k~~ls~~wPat~HvIGKDIlrFH---avYWPafLmaAGlp----lP~~I~vHghwt----  339 (578)
T KOG0436         272 DALLNYISVIGYPNKQQ-NLKTALSFGWPATLHVIGKDILRFH---AVYWPAFLMAAGLP----LPKMIFVHGHWT----  339 (578)
T ss_pred             HHHHHHHHHHCCCCHHC-CCCCEEECCCCCEEEEHHHHHHHHH---HHHHHHHHHHCCCC----CCCEEEEEEEEE----
T ss_conf             98865788606882102-4000152378751232014456645---54518999866999----861798841265----


Q ss_pred             CCCCCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf             32358700130620221025677754411048970640474210000001222210012346335666553013321111
Q gi|254780802|r  588 YQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDI  667 (869)
Q Consensus       588 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~~~~~~~~~~d~  667 (869)
                                                            .+|.|||||+||||+|.+++++||+|++|+|++-.+.++.|-
T Consensus       340 --------------------------------------~ngmKMsKSLGNvvdP~~l~~kygvD~vRyflLr~~~l~~Dg  381 (578)
T KOG0436         340 --------------------------------------KNGMKMSKSLGNVVDPFELVQKYGVDAVRYFLLREGELGNDG  381 (578)
T ss_pred             --------------------------------------ECCEECCHHHCCCCCHHHHHHHHCCCCEEEEEEECCCCCCCC
T ss_conf             --------------------------------------422210212046468899998838441566755535207888


Q ss_pred             CCCCCCHHHHHH-HHHH-HHHHHHHHHC----------C-CCC--CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf             134321011455-6778-8999997630----------2-466--78975699999999999999999881688999999
Q gi|254780802|r  668 IWSNKGVDSTYQ-FIQQ-IWRLIYNAKD----------E-LQT--SSTKKDISLISKSTKFLERIEENYQNLSFNKAVAN  732 (869)
Q Consensus       668 ~~s~~~i~~~~r-fl~k-l~~l~~~~~~----------~-~~~--~~~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai~~  732 (869)
                      +|+++.+....+ -|.+ +-+|+.....          . +..  .....+..+.+.++++.+.+.++|++|++..|+.+
T Consensus       382 dy~eekl~k~~n~~La~~lG~LlnRc~gkkln~sn~e~~l~~~s~~v~ae~~~lv~~v~kl~ev~a~~~d~f~~~~ale~  461 (578)
T KOG0436         382 DYSEEKLIKIVNAHLANTLGNLLNRCLGKKLNISNCESTLVVDSPTVAAEGEPLVDTVEKLPEVAATNYDNFSLYSALEA  461 (578)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf             81299999999999999998998887521357001563002477425531452899999758999854033309999999


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCC----------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC-EEECCC
Q ss_conf             99999999999986211000221----------799999999999999722343899999998289983-551788
Q gi|254780802|r  733 IHELVNVISKPLMEIAKKKSNAD----------RISTIRYILEKLIIMMSPMIPHLAEECWQLLGNAGL-VAQQKW  797 (869)
Q Consensus       733 i~~f~n~ls~~y~~~~k~~~~~~----------~~~~l~~vl~~l~~lLaPi~PhiaEEiw~~Lg~~~~-i~~~~W  797 (869)
                      +....|..+.+...........+          ...+..++|+.+.+||.|++|-++.++..+||-... -++..|
T Consensus       462 V~si~n~~ntlvq~~aPWkl~~dsq~~~~~la~~~~~~le~lrv~~illqpv~Psls~~llsqlgvsk~qrsl~~~  537 (578)
T KOG0436         462 VLSIGNAGNTLVQQRAPWKLFKDSQVSAEELAKVLHIILEVLRVIGILLQPVAPSLSLRLLSQLGVSKDQRSLITW  537 (578)
T ss_pred             HHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHCCCCCC
T ss_conf             9999975315665068702111467368999999999999999999987235653679999870987433021010


No 34 
>KOG1247 consensus
Probab=100.00  E-value=5.4e-32  Score=237.28  Aligned_cols=490  Identities=16%  Similarity=0.208  Sum_probs=315.9

Q ss_pred             CCCCCCEEEEECCCCCCCCCCCCHHHHH-HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             7888838998077897898740047797-789999997771898556768814020589999998099999999999999
Q gi|254780802|r   30 GKNKKKYFVLEMFPYPSGNIHMGHLRNY-VIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKV  108 (869)
Q Consensus        30 ~~~~~kf~i~~~pPy~nG~lHiGH~~~~-t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~  108 (869)
                      ..|+-.-+|+.+-||.|..+|.|....- .-+||+|||.+.+|++.+|..|.|--|+.+|..|.|.+..|++.-+++.+.
T Consensus        10 ~~n~rnilitsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatetkaleeg~tP~elcdKyh~i   89 (567)
T KOG1247          10 APNERNILITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETKALEEGLTPQELCDKYHGI   89 (567)
T ss_pred             CCCCCCEEEECCCCEECCCCCCCCEEEEEEEHHHHCCCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHCCHH
T ss_conf             77756633512532021665336646677644230123667787447851566540466799987569878988722126


Q ss_pred             HHHHHHHCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCC
Q ss_conf             99999981917664698214773599999999999998896341221332147767677898984385334564322334
Q gi|254780802|r  109 MRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQVINGRGWRSDAPVEQRS  188 (869)
Q Consensus       109 ~k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~pV~wcp~~~t~la~~Ev~~g~~~~~~~~v~~~~  188 (869)
                      .+.-.+=+++.+|-..  +|+.+..-+..|-+|.+|+++|++-...--+.||++|++-|||..| +|+|..|++.-.+.+
T Consensus        90 hk~vy~Wf~IdfD~fg--rtTT~~qT~i~Q~iF~kl~~ng~~se~tv~qLyC~vc~~fladr~v-eg~cp~C~yd~ARGD  166 (567)
T KOG1247          90 HKVVYDWFKIDFDEFG--RTTTKTQTEICQDIFSKLYDNGYLSEQTVKQLYCEVCDTFLADRFV-EGKCPFCGYDDARGD  166 (567)
T ss_pred             HHHHHHHHCCCCCCCC--CCCCCCHHHHHHHHHHCHHHCCCCCCCEEEEEEEHHHCCCCCCHHH-HCCCCCCCCCCCCCH
T ss_conf             7888875156621037--6067113277898862521157711000115775211240340443-033788877653205


Q ss_pred             CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEC
Q ss_conf             75233430344454432100225543222221000145576754535556777777513653200134443232003302
Q gi|254780802|r  189 LPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIRWEIVSNTIDQIEEILVYTTRPETIFGASFIAIAV  268 (869)
Q Consensus       189 ~~~~~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~TtrPeTl~g~~~i~v~~  268 (869)
                                                      |++-.|+....                               +....|
T Consensus       167 --------------------------------qcd~cG~l~N~-------------------------------~el~~p  183 (567)
T KOG1247         167 --------------------------------QCDKCGKLVNA-------------------------------AELKIP  183 (567)
T ss_pred             --------------------------------HHHHHHHHCCH-------------------------------HHHCCC
T ss_conf             --------------------------------66666542378-------------------------------772385


Q ss_pred             CCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEEEEE-ECCCCCCCCCCCCCCCCCCC
Q ss_conf             44320345413145899988653111124555430255323786103777774157763-11234545333222111346
Q gi|254780802|r  269 DHSISEKLSCDNTDIKEFCDEEKQKGTSLSVLDKTEKKGIYTGIHVKHPLNPNVVIPVY-IANFVFMNYGTGAIFGCPFA  347 (869)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~P~~~~~~ipv~-~~~~V~~~~GTG~V~~~P~h  347 (869)
                                                                    ++-+-  .+-|++ ...|+               
T Consensus       184 ----------------------------------------------kc~ic--~~~p~~~~t~h~---------------  200 (567)
T KOG1247         184 ----------------------------------------------KCKIC--QAGPVVRQTQHL---------------  200 (567)
T ss_pred             ----------------------------------------------CHHEE--CCCCEEEEEEEE---------------
T ss_conf             ----------------------------------------------20100--267735541279---------------


Q ss_pred             CCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCH--HHHHH
Q ss_conf             7211012210354432101677655542221121012334458300013564665488899997404677520--22211
Q gi|254780802|r  348 DQRDMDFAKKYGLPIIPIMKRSINHSQDIEEGKAFSGDGIMINSSFLDGMTNTEALQAVMSHLEKQNIKNSPI--GKRKI  425 (869)
Q Consensus       348 ~~~D~~~~~k~glpi~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~l~~~~~~~~~~--~~~~~  425 (869)
                                                                      .++.......+-+++.+......|.  +...+
T Consensus       201 ------------------------------------------------Fl~L~kl~~~lee~~~~~~~~~~WS~Na~~it  232 (567)
T KOG1247         201 ------------------------------------------------FLSLDKLEPRLEEWLRRTLVEGDWSQNAQNIT  232 (567)
T ss_pred             ------------------------------------------------EEEHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
T ss_conf             ------------------------------------------------98757767899999973054577761167899


Q ss_pred             HHH----CCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             100----0111221123222223422333468463474200011100100022454210024564211013676443564
Q gi|254780802|r  426 NFR----LRDWCISRQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTWKKIFCVKCGSEALRET  501 (869)
Q Consensus       426 ~~~----l~DW~ISRqr~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~  501 (869)
                      +.+    ++.-||.|..-||+|+|.-.-                                                  +.
T Consensus       233 ~sWlk~gl~pRCiTRDLkWGtpVPle~f--------------------------------------------------k~  262 (567)
T KOG1247         233 RSWLKDGLKPRCITRDLKWGTPVPLEKF--------------------------------------------------KD  262 (567)
T ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCHHHH--------------------------------------------------CC
T ss_conf             9999746665200022556887674551--------------------------------------------------66


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             32345666433322335556544101356641143344014555443320234555320134787322320022223553
Q gi|254780802|r  502 DTMDTFVDSSWYYMRYMTPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIGYIEIDEPFKRLFTQGM  581 (869)
Q Consensus       502 dvld~w~dS~~~~~~~~~~~~~~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~g~~~~~~pf~~l~~~G~  581 (869)
                      .|+-+|||..+-|+..+.-.      .+.+++|+--      .++.-++    .|.       |  .-..||++++..++
T Consensus       263 KVfYVWFDA~IGYlsit~~y------t~ew~kWwkn------pE~v~Ly----qFm-------g--KDNVpFHtviFP~s  317 (567)
T KOG1247         263 KVFYVWFDAPIGYLSITKNY------TDEWEKWWKN------PENVELY----QFM-------G--KDNVPFHTVIFPCS  317 (567)
T ss_pred             CEEEEEECCCCEEEEEEHHH------HHHHHHHHCC------HHHHHHH----HHH-------C--CCCCCCEEEECCHH
T ss_conf             27999973751378850666------6789998469------7440398----874-------6--67776146641245


Q ss_pred             CCCCCCCCCCCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCCC-CCCHHHHHHHHHHC
Q ss_conf             23224332358700130620221025677754411048970640474210000001222210012-34633566655301
Q gi|254780802|r  582 VVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIK-SYGADTARLFVLSD  660 (869)
Q Consensus       582 v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~-~yGaD~lRl~~~~~  660 (869)
                      .++..        .||....|+..+               +.+..+..|-|||+|-.|=-.++.+ .-++|.-|+|+++.
T Consensus       318 ~lgt~--------en~t~v~~l~aT---------------eYLnyE~gKFSKSrgvGvFG~~aqd~gi~~~vWRyYLl~~  374 (567)
T KOG1247         318 QLGTE--------ENYTVVHHLSAT---------------EYLNYEDGKFSKSRGVGVFGNDAQDTGIPASVWRYYLLYI  374 (567)
T ss_pred             HHCCC--------CCCHHHEEECHH---------------HHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
T ss_conf             41677--------773321000154---------------4200246740145652220554335799888889887522


Q ss_pred             CCCCCCCCCCCCC---------HHHHHHHHHHHHHHHHHHHCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf             3321111134321---------01145567788999997630246678--975699999999999999999881688999
Q gi|254780802|r  661 SPPDRDIIWSNKG---------VDSTYQFIQQIWRLIYNAKDELQTSS--TKKDISLISKSTKFLERIEENYQNLSFNKA  729 (869)
Q Consensus       661 ~~~~~d~~~s~~~---------i~~~~rfl~kl~~l~~~~~~~~~~~~--~~~D~~ils~~~~~i~~v~~~~e~~~f~~a  729 (869)
                      -|-.+|..||++.         +.+..+|+||+..++..-.+...+..  +..|..+++.++....+..++||.-++++|
T Consensus       375 RPEssDs~Fsw~df~~k~nseLl~NLGNFvNR~l~fv~~~~~g~Vp~~~~~~~~~~~~~dv~~~~~~y~~~me~vklr~~  454 (567)
T KOG1247         375 RPESSDSAFSWDDFVLKVNSELLNNLGNFVNRVLKFVAAKYNGVVPEMELTSGDKKLLEDVNELLAKYVAAMEKVKLREA  454 (567)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             67666776758999987359999888889999999998760871663030687588999999999999999887789999


Q ss_pred             HHHHHHHHHHHHHHHHHHCC------CCCCC-CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEE
Q ss_conf             99999999999999986211------00022-1799999999999999722343899999998289983551
Q gi|254780802|r  730 VANIHELVNVISKPLMEIAK------KKSNA-DRISTIRYILEKLIIMMSPMIPHLAEECWQLLGNAGLVAQ  794 (869)
Q Consensus       730 i~~i~~f~n~ls~~y~~~~k------~~~~~-~~~~~l~~vl~~l~~lLaPi~PhiaEEiw~~Lg~~~~i~~  794 (869)
                      ++.+|+....-+.+..+...      ++..+ ....+-..++-.+..||+|+||-++.+|..+|+-+..+..
T Consensus       455 l~~~m~is~~GNqylQ~~~~~k~~~~~r~r~~~vi~~a~nii~lvs~ll~P~mP~~s~~I~kqlnlp~~~~~  526 (567)
T KOG1247         455 LKTAMEISRRGNQYLQENTDNKLYEESRQRAGTVIGLAANIIYLVSVLLYPYMPTTSAEILKQLNLPETLFP  526 (567)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCEEEEHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCC
T ss_conf             999999997520887414200010322000552643366899999998636566206999998498500179


No 35 
>pfam01406 tRNA-synt_1e tRNA synthetases class I (C) catalytic domain. This family includes only cysteinyl tRNA synthetases.
Probab=100.00  E-value=3.5e-33  Score=245.38  Aligned_cols=125  Identities=16%  Similarity=0.169  Sum_probs=109.5

Q ss_pred             CCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHH
Q ss_conf             03676788883899807789789874004779778999999777189855676881402058999999809999999999
Q gi|254780802|r   25 FKAENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQ  104 (869)
Q Consensus        25 fe~~~~~~~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~  104 (869)
                      |++ .++++-+||++-|-.|  +.+|||||+|++..|+++||+|++|++|.|..|.|-||-+|+.+|++.++.|++++.+
T Consensus         2 f~p-~~~~~v~~YicgPt~Y--~~pHIGHa~t~I~~Dvi~R~~r~~G~~V~fv~g~ddhgdKI~~~A~~~g~~p~e~~d~   78 (301)
T pfam01406         2 FVP-LHQGKVNMYVCGPTVY--DDSHIGHARSAVAFDVLRRYLQALGYDVQFVQNFTDIDDKIIKRAQQQGESFRELAAR   78 (301)
T ss_pred             CCC-CCCCEEEEEECCCCCC--CCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCHHHHHHH
T ss_conf             558-8799378997899068--9975223368999999999999749946999677863179999999809865379999


Q ss_pred             HHHHHHHHHHHCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCE
Q ss_conf             999999999981917664698214773599999999999998896341221
Q gi|254780802|r  105 NIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTA  155 (869)
Q Consensus       105 ~i~~~k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~  155 (869)
                      +.+.+++.+++|+++-+-.. -+|++  +.+.++..+.+|.++|.+|.+..
T Consensus        79 ~~~~F~~~~~~L~I~~~d~~-~rtTe--hi~~v~~~i~~L~~kG~~Y~~~~  126 (301)
T pfam01406        79 FITAYTKDMDALNVLPPDLE-PRVTE--HIDEIIEFIERLIKKGYAYVSDN  126 (301)
T ss_pred             HHHHHHHHHHHHCCCCCCCC-CCCCC--CHHHHHHHHHHHHHCCCEEECCC
T ss_conf             99999988998498289868-77543--57999999999997797687269


No 36 
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=99.96  E-value=2.2e-26  Score=198.87  Aligned_cols=125  Identities=22%  Similarity=0.233  Sum_probs=99.1

Q ss_pred             CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             88838998077897898740047797789999997771898556768814020589999998099999999999999999
Q gi|254780802|r   32 NKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRK  111 (869)
Q Consensus        32 ~~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~  111 (869)
                      ++-+.|+-  =|.+=+.+||||+|+|+..|++.||.|..||+|.|.+..----=.|...|.+.++.+.+++.++.+.+.+
T Consensus        22 ~~v~~Y~C--GPTVYd~~HiG~~r~~v~~D~l~R~l~~~g~~v~~v~NiTDidDKii~~a~~~~~~~~~~~~~~~~~f~~   99 (460)
T PRK00260         22 GKVKMYVC--GPTVYDYAHIGHARSFVVFDVLRRYLRYRGYKVTYVRNITDIDDKIIKRANEEGESIKELTERYIAAFHE   99 (460)
T ss_pred             CEEEEEEC--CCCCCCCCCHHCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             95889967--9848887320003089999999999996499349998237541999999998196999999999999999


Q ss_pred             HHHHCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCC
Q ss_conf             99981917664698214773599999999999998896341221332147
Q gi|254780802|r  112 QLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDP  161 (869)
Q Consensus       112 ~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~pV~wcp  161 (869)
                      ++++||+.--=.-+-.|   +|...+.-...+|.++|+.|....-|+++.
T Consensus       100 d~~~L~i~~p~~~~r~t---~~i~~~i~~i~~l~~~g~aY~~~~~vyFdv  146 (460)
T PRK00260        100 DMDALGVLRPDIEPRAT---EHIPEIIELIERLIEKGHAYEADGDVYFDV  146 (460)
T ss_pred             HHHHHCCCCCCCCCCCC---CCHHHHHHHHHHHHHCCCEEEECCEEEECC
T ss_conf             99994899985224301---479999999999985795288478799635


No 37 
>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.94  E-value=2.8e-26  Score=198.15  Aligned_cols=136  Identities=21%  Similarity=0.358  Sum_probs=114.0

Q ss_pred             CCCCCHHHH-HHHHHHHHHHHHHHHC-----CCC--------CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf             343210114-5567788999997630-----246--------67897569999999999999999988168899999999
Q gi|254780802|r  669 WSNKGVDST-YQFIQQIWRLIYNAKD-----ELQ--------TSSTKKDISLISKSTKFLERIEENYQNLSFNKAVANIH  734 (869)
Q Consensus       669 ~s~~~i~~~-~rfl~kl~~l~~~~~~-----~~~--------~~~~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai~~i~  734 (869)
                      |+++++.++ ++|++++||...+...     .+.        ......|+||++++++++++++++|++|+|+.|++.++
T Consensus         1 F~e~~v~e~~R~f~nklwNa~RF~~~~~~~~~~~~~~~~~~~~~~~~~D~WIls~l~~~~~~v~~~~~~y~f~~a~~~l~   80 (183)
T cd07961           1 FSEKGVREVVRKVLLPLWNAYRFFVTYANLDGFDPGKDDDAVASLNVLDRWILSRLNSLIKEVTEEMEAYDLYTAVRALL   80 (183)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             98889999983589999989999996221017995434556010558899999999999999999998011999999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCCC--------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC-----CCCEEECCCCCCC
Q ss_conf             999999999986211000221--------799999999999999722343899999998289-----9835517886659
Q gi|254780802|r  735 ELVNVISKPLMEIAKKKSNAD--------RISTIRYILEKLIIMMSPMIPHLAEECWQLLGN-----AGLVAQQKWPKLD  801 (869)
Q Consensus       735 ~f~n~ls~~y~~~~k~~~~~~--------~~~~l~~vl~~l~~lLaPi~PhiaEEiw~~Lg~-----~~~i~~~~WP~~d  801 (869)
                      +|+++||+||+++.|++.+++        ...||+++|+.+++||||||||+|||||+.|.+     .+|||+++||+++
T Consensus        81 ~F~~~l~~wYie~~K~rl~~~~~~~~~~~a~~~L~~vL~~~l~ll~P~~PFitEeiwq~l~~~~~~~~eSVhl~~~P~~~  160 (183)
T cd07961          81 EFIDELTNWYIRRNRKRFWGEEGDDDKLAAYATLYEVLLTLSRLMAPFTPFITEEIYQNLRRELGDAPESVHLLDWPEVD  160 (183)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCEECCCCCCCC
T ss_conf             99999989999998899970566388899999999999999997576402439999998602468988803200689988


Q ss_pred             HHH
Q ss_conf             678
Q gi|254780802|r  802 PIL  804 (869)
Q Consensus       802 ~~~  804 (869)
                      +..
T Consensus       161 ~~~  163 (183)
T cd07961         161 ESL  163 (183)
T ss_pred             CCC
T ss_conf             102


No 38 
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.91  E-value=3.4e-22  Score=170.09  Aligned_cols=122  Identities=20%  Similarity=0.208  Sum_probs=97.0

Q ss_pred             EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             89980778978987400477977899999977718985567688140205899999980999999999999999999998
Q gi|254780802|r   36 YFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQLQS  115 (869)
Q Consensus        36 f~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~~~~  115 (869)
                      .-+..==|++=...||||||+++.-|++.||.+..||.|.|.+-+--=-=.|...|.+.+..++++++++++.+.++|+.
T Consensus        23 V~mYvCGpTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDIDDKIi~rA~~~g~~~~ev~~~~i~~f~~D~~a  102 (464)
T COG0215          23 VKMYVCGPTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDIDDKIINRAREEGLSIREVAERYIAAFFEDMDA  102 (464)
T ss_pred             EEEEECCCCCCCCCCCCCCCCEEHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf             68996188257764456676520299999999982970799964666638999999982999999999999999999998


Q ss_pred             CCCE-EECCCCEECCCHHHHHHHHHHHHHHHHCCCEEEC-CEEEECCC
Q ss_conf             1917-6646982147735999999999999988963412-21332147
Q gi|254780802|r  116 IGLS-IDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRK-TAQVNWDP  161 (869)
Q Consensus       116 lG~~-~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg-~~pV~wcp  161 (869)
                      ||+. .|- .|-.|   +|..-+.....+|-+||+.|.. .--|+++.
T Consensus       103 L~v~~p~~-~PraT---e~I~~iI~~I~~Li~kG~AY~~~~G~VYFdv  146 (464)
T COG0215         103 LNVLPPDI-EPRAT---EHIDEIIEFIEKLIEKGYAYVADDGDVYFDV  146 (464)
T ss_pred             HCCCCCCC-CCCHH---HCHHHHHHHHHHHHHCCCEEEECCCCEEEEC
T ss_conf             29999865-57476---4799999999999977965884698289952


No 39 
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.90  E-value=3.4e-23  Score=176.95  Aligned_cols=132  Identities=19%  Similarity=0.395  Sum_probs=106.5

Q ss_pred             CCHHHHHHHHHHHHH---HHHHHHCCCCCC--------CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-HH
Q ss_conf             210114556778899---999763024667--------897569999999999999999988168899999999999-99
Q gi|254780802|r  672 KGVDSTYQFIQQIWR---LIYNAKDELQTS--------STKKDISLISKSTKFLERIEENYQNLSFNKAVANIHELV-NV  739 (869)
Q Consensus       672 ~~i~~~~rfl~kl~~---l~~~~~~~~~~~--------~~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai~~i~~f~-n~  739 (869)
                      +.+..+...++|+||   ++.++.+.+.+.        ....|+||++++++++++++++|++|+|+.|++.+++|+ ++
T Consensus         4 ~iL~~~~e~~rKiwNt~RF~l~nl~~~~~~~~~~~~~~l~~lD~wiLs~l~~~~~~v~~~~~~y~f~~~~~~l~~F~~~~   83 (180)
T cd07960           4 EILKQVAEAYRKIRNTFRFLLGNLNDFDPAKDAVPYEELLELDRYALHRLNELIKEVREAYENYEFHKVYQALNNFCTVD   83 (180)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
T ss_conf             99999999999999999999986379994334589222879899999999999999999998389999999999994021


Q ss_pred             HHHHHHHHCCCCCCCC---------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC---CCCEEECCCCCCCHH
Q ss_conf             9999986211000221---------799999999999999722343899999998289---983551788665967
Q gi|254780802|r  740 ISKPLMEIAKKKSNAD---------RISTIRYILEKLIIMMSPMIPHLAEECWQLLGN---AGLVAQQKWPKLDPI  803 (869)
Q Consensus       740 ls~~y~~~~k~~~~~~---------~~~~l~~vl~~l~~lLaPi~PhiaEEiw~~Lg~---~~~i~~~~WP~~d~~  803 (869)
                      ||+||++..|++.+++         .+.||+++++.++++||||+||+|||+|+.|++   .+||++++||++++.
T Consensus        84 ls~~Yle~~K~rly~~~~~~~~r~~~~~~L~~vl~~~l~llaPi~Pf~tEeiw~~l~~~~~~~Si~l~~~P~~~~~  159 (180)
T cd07960          84 LSAFYLDIIKDRLYCDAKDSLERRSAQTVLYHILDALLKLLAPILPFTAEEVWEHLPGEKKEESVFLEDWPELPEE  159 (180)
T ss_pred             CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCEEECCCCCCCCC
T ss_conf             0359999977976158888389999999999999998987440004539999987566899997571489999801


No 40 
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.90  E-value=1.1e-22  Score=173.34  Aligned_cols=112  Identities=34%  Similarity=0.694  Sum_probs=97.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHCCCC-----CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf             3432101145567788999997630246-----67897569999999999999999988168899999999999999999
Q gi|254780802|r  669 WSNKGVDSTYQFIQQIWRLIYNAKDELQ-----TSSTKKDISLISKSTKFLERIEENYQNLSFNKAVANIHELVNVISKP  743 (869)
Q Consensus       669 ~s~~~i~~~~rfl~kl~~l~~~~~~~~~-----~~~~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai~~i~~f~n~ls~~  743 (869)
                      ||+++|+|++||++|+||++....+...     .+.+..|+|+++++|+++++|++++|+|+||+|++.+|+|+|.+++.
T Consensus         1 Wse~gIeg~~rFl~KlW~l~~~~~~~~~~~~~~~~~~~~d~~i~~~l~~~i~~vt~~~e~~~fN~aia~l~ef~N~l~~~   80 (117)
T cd07958           1 WSDSGVEGAYRFLNRVWRLVTELAEALAAPAAAAELSEEDKELRRKLHKTIKKVTEDIERLRFNTAIAALMELVNALYKY   80 (117)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf             98006999999999999999988863134556544667449999999999999999998522059999999999999884


Q ss_pred             HHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC
Q ss_conf             9862110002217999999999999997223438999999982
Q gi|254780802|r  744 LMEIAKKKSNADRISTIRYILEKLIIMMSPMIPHLAEECWQLL  786 (869)
Q Consensus       744 y~~~~k~~~~~~~~~~l~~vl~~l~~lLaPi~PhiaEEiw~~L  786 (869)
                      ..      .......+++++++.+++|||||+||+|||||+.|
T Consensus        81 ~~------~~~~~~~~~~~~l~~ll~lL~P~~PHiaEElW~~L  117 (117)
T cd07958          81 KK------KDAQHAAVLREALETLVLLLAPFAPHIAEELWEEL  117 (117)
T ss_pred             HC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             61------44114999999999999998842479999998539


No 41 
>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases. This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA.
Probab=99.89  E-value=2e-22  Score=171.71  Aligned_cols=118  Identities=24%  Similarity=0.441  Sum_probs=101.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHC---CCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-H
Q ss_conf             3432101145567788999997630---246------67897569999999999999999988168899999999999-9
Q gi|254780802|r  669 WSNKGVDSTYQFIQQIWRLIYNAKD---ELQ------TSSTKKDISLISKSTKFLERIEENYQNLSFNKAVANIHELV-N  738 (869)
Q Consensus       669 ~s~~~i~~~~rfl~kl~~l~~~~~~---~~~------~~~~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai~~i~~f~-n  738 (869)
                      ||++++++++||++|+||.......   ...      ......|+||++++++++++|+++|++|+|++|++.+++|+ +
T Consensus         1 ~~e~~i~~~~rf~nKlwN~~rf~~~~~~~~~~~~~~~~~~~~~Dkwil~~l~~~~~~i~~~~~~~~f~~a~~~l~~F~~~   80 (135)
T cd07962           1 FDEKRVEGGRNFCNKLWNAARFVLMNLEDDDEPEEDPESLSLADRWILSRLNKTVEEVTEALENYRFSEAATALYEFFWN   80 (135)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             98999899999999999999999875453687546610077999999999999999999999865899999999999899


Q ss_pred             HHHHHHHHHCCCCCCCC-------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC
Q ss_conf             99999986211000221-------7999999999999997223438999999982
Q gi|254780802|r  739 VISKPLMEIAKKKSNAD-------RISTIRYILEKLIIMMSPMIPHLAEECWQLL  786 (869)
Q Consensus       739 ~ls~~y~~~~k~~~~~~-------~~~~l~~vl~~l~~lLaPi~PhiaEEiw~~L  786 (869)
                      +||++|+++.|++.+..       ...+|+++++.++++||||+||+|||||+.|
T Consensus        81 ~ls~~Yie~~K~rl~~~~~~~~~~~~~~l~~~l~~~l~llaP~~PfitEeiw~~l  135 (135)
T cd07962          81 DFCDWYLELVKPRLYGEDEEEKKAARATLYYVLETILRLLHPFMPFITEELWQRL  135 (135)
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             9989999997998729978999999999999999999999878799999998439


No 42 
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=99.88  E-value=1.3e-20  Score=159.19  Aligned_cols=116  Identities=15%  Similarity=0.093  Sum_probs=91.9

Q ss_pred             EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             89980778978987400477977899999977718985567688140205899999980999999999999999999998
Q gi|254780802|r   36 YFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQLQS  115 (869)
Q Consensus        36 f~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~~~~  115 (869)
                      --++.==|++-+..||||+|+|+.-|++.||.+..||+|.|.+..--=-=.|...|.+.++++.+.++++++.+.++|+.
T Consensus        10 V~mY~CGPTVYd~~HiGhaRt~v~fD~l~R~L~~~gy~V~~v~NiTDVDDKii~~A~~~g~~~~ela~~~~~~f~~d~~~   89 (384)
T PRK12418         10 ATMYVCGITPYDATHLGHAATYLAFDLVQRVWLDAGHDVHYVQNVTDVDDPLLERAARDGVDWRDLAAREIALFREDMAA   89 (384)
T ss_pred             EEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf             89996688688885423351689999999999980996499981050638999999985939999999999999999998


Q ss_pred             CCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECC
Q ss_conf             191766469821477359999999999999889634122
Q gi|254780802|r  116 IGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKT  154 (869)
Q Consensus       116 lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~  154 (869)
                      ||+.--=..   +---++..-+.-...+|.++|+.|+-.
T Consensus        90 Lnv~~p~~~---praTe~I~~ii~~I~~Li~~G~AY~~~  125 (384)
T PRK12418         90 LRVLPPRDY---VGAVESIPEVVELVEKLLASGAAYVVD  125 (384)
T ss_pred             CCCCCCCEE---CCCCCCHHHHHHHHHHHHHCCCEEECC
T ss_conf             299999500---321137999999999999679557756


No 43 
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=99.88  E-value=1.2e-20  Score=159.50  Aligned_cols=115  Identities=15%  Similarity=0.111  Sum_probs=89.5

Q ss_pred             EEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             98077897898740047797789999997771898556768814020589999998099999999999999999999819
Q gi|254780802|r   38 VLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQLQSIG  117 (869)
Q Consensus        38 i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~~~~lG  117 (869)
                      +..==|.+-+..||||+|+|+.-|++.||.+.+||+|.|.+..--=-=.|...|.+.++...+.+.++++.+.++|++||
T Consensus        39 mYvCGpTVYd~~HiGhaR~~v~fD~l~R~L~~~G~~V~~v~NiTDiDDKii~~A~~~g~~~~ela~~y~~~f~~d~~~Ln  118 (411)
T TIGR03447        39 MYVCGITPYDATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAERDGVDWRELGTSQIDLFREDMEALR  118 (411)
T ss_pred             EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf             99658847888862234168999999999998398558996146542599999988298999999999999999999749


Q ss_pred             CEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCE
Q ss_conf             17664698214773599999999999998896341221
Q gi|254780802|r  118 LSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTA  155 (869)
Q Consensus       118 ~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~  155 (869)
                      +---=..+-.|   ++...+.-...+|-++|+.|...-
T Consensus       119 i~~p~~~praT---e~I~~ii~~I~~Li~kG~AY~~~~  153 (411)
T TIGR03447       119 VLPPRDYIGAV---ESIDEVIEMVEKLLAAGAAYEVEG  153 (411)
T ss_pred             CCCCCCCCCCC---CCHHHHHHHHHHHHHCCCEEEECC
T ss_conf             99998776743---479999999999986896798279


No 44 
>pfam08264 Anticodon_1 Anticodon-binding domain. This domain is found valyl and leucyl tRNA synthetases. It binds to the anticodon of the tRNA.
Probab=99.87  E-value=1.9e-21  Score=164.95  Aligned_cols=100  Identities=30%  Similarity=0.604  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-HHHHHHHHHHCCCCCCCC-------HHHHHHHHHHHHHHHHCCC
Q ss_conf             69999999999999999988168899999999999-999999986211000221-------7999999999999997223
Q gi|254780802|r  703 DISLISKSTKFLERIEENYQNLSFNKAVANIHELV-NVISKPLMEIAKKKSNAD-------RISTIRYILEKLIIMMSPM  774 (869)
Q Consensus       703 D~~ils~~~~~i~~v~~~~e~~~f~~ai~~i~~f~-n~ls~~y~~~~k~~~~~~-------~~~~l~~vl~~l~~lLaPi  774 (869)
                      |+|+++++++++++++++|++|+|++|++.+++|+ |+||+||++..|++.+++       +..+|+++++.++++||||
T Consensus         1 Dkwil~~l~~~i~~v~~~~e~~~f~~a~~~l~~f~~~~l~~~Yle~~K~~l~~~~~~~~~~~~~~l~~~l~~~l~ll~P~   80 (148)
T pfam08264         1 DRWILSRLNKLIKEVTEAYEKYRFNTAASALYEFFWNDLSDWYLELSKDRLYGEDPDESKRRATTLYEVLETLLRLLAPF   80 (148)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             98999999999999999998079999999999999999989999974052147880677779999999999999998331


Q ss_pred             HHHHHHHHHHHCCCCCCEEECCCCCCCH
Q ss_conf             4389999999828998355178866596
Q gi|254780802|r  775 IPHLAEECWQLLGNAGLVAQQKWPKLDP  802 (869)
Q Consensus       775 ~PhiaEEiw~~Lg~~~~i~~~~WP~~d~  802 (869)
                      |||+|||+|+.++..+||+.++||++++
T Consensus        81 ~PfitEeiw~~~~~~~si~~~~wP~~~~  108 (148)
T pfam08264        81 MPFITEELWQKLGLKGSIHLAPWPEADE  108 (148)
T ss_pred             HHHHHHHHHHHCCCCCEEECCCCCCCCC
T ss_conf             0888999998679998163049999990


No 45 
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.81  E-value=9e-19  Score=146.65  Aligned_cols=114  Identities=23%  Similarity=0.335  Sum_probs=97.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHHHHHH
Q ss_conf             34321011455677889999976302466--789756999999999999999998816889999999-999999999998
Q gi|254780802|r  669 WSNKGVDSTYQFIQQIWRLIYNAKDELQT--SSTKKDISLISKSTKFLERIEENYQNLSFNKAVANI-HELVNVISKPLM  745 (869)
Q Consensus       669 ~s~~~i~~~~rfl~kl~~l~~~~~~~~~~--~~~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai~~i-~~f~n~ls~~y~  745 (869)
                      |+++.+.++...|.++++++....+...+  +.+..|+|+++++++++++++++||+|+|++|++.+ +++.+++ ++|.
T Consensus         1 f~~~~a~~~~~~L~~~~~~~~e~~~~~~~~~~~~~~Dkw~ls~l~~~i~~~~~a~e~~~fr~a~~~~~~~l~~~~-~~Y~   79 (117)
T cd07959           1 FREEEANSAILRLERFYELAEELIETEGELEELTFIDRWLLSRLNRLIKETTEAYENMQFREALKEGLYELQNDL-DWYR   79 (117)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_conf             918789999999999999999998625778889776899999999999999999998788789999999999999-9999


Q ss_pred             HHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC
Q ss_conf             62110002217999999999999997223438999999982
Q gi|254780802|r  746 EIAKKKSNADRISTIRYILEKLIIMMSPMIPHLAEECWQLL  786 (869)
Q Consensus       746 ~~~k~~~~~~~~~~l~~vl~~l~~lLaPi~PhiaEEiw~~L  786 (869)
                      +..+.+   .+..+|+++++.+++|||||+||+|||||+.|
T Consensus        80 ~~~~~~---~~~~~l~~~l~~~~~lLaP~~PhiaEEiW~~l  117 (117)
T cd07959          80 ERGGAG---MNKDLLRRFIEVWTRLLAPFAPHLAEEIWHEL  117 (117)
T ss_pred             HHHCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             984554---14999999999999998473348699998639


No 46 
>KOG2007 consensus
Probab=99.79  E-value=8e-17  Score=133.26  Aligned_cols=129  Identities=21%  Similarity=0.218  Sum_probs=99.1

Q ss_pred             CCCEEEECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC--
Q ss_conf             897064047421000000122221001234633566655301332111113432101145567788999997630246--
Q gi|254780802|r  619 DNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDIIWSNKGVDSTYQFIQQIWRLIYNAKDELQ--  696 (869)
Q Consensus       619 ~~~~~~~~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~~~~~~~~~~d~~~s~~~i~~~~rfl~kl~~l~~~~~~~~~--  696 (869)
                      -|++.+.-+|+|||||++|+|+..+++++|.++.||++++. +..-+.+++|++.+..+..+.+.+-|+++.+.....  
T Consensus       294 lHtGhL~i~g~KMSKSLkNFiTIke~Lk~~sp~qLRl~fl~-~~wr~~ldYs~s~m~~a~q~e~~~~~ff~~~~al~~~~  372 (586)
T KOG2007         294 LHTGHLTINGEKMSKSLKNFITIKEALKKYSPRQLRLAFLL-HQWRSPLDYSDSTMEQALQLEKSLNNFFLDVKALLRGA  372 (586)
T ss_pred             EECCEEEECCCHHHHHHCCCEEHHHHHHHCCHHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             87573665111043332041439999976398999999998-77567678438899999999999999999999998254


Q ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             ---6789756999999999999999998-816889999999999999999998621
Q gi|254780802|r  697 ---TSSTKKDISLISKSTKFLERIEENY-QNLSFNKAVANIHELVNVISKPLMEIA  748 (869)
Q Consensus       697 ---~~~~~~D~~ils~~~~~i~~v~~~~-e~~~f~~ai~~i~~f~n~ls~~y~~~~  748 (869)
                         ......+..++..+..+...|..++ ++|+...++..+-++++..+.+..+..
T Consensus       373 ~~~~~~~~~e~~l~~~~~~t~~~vh~al~d~~dT~~v~~~~~~lvs~~N~~i~~~~  428 (586)
T KOG2007         373 KPFEKLSEKEAELLEDFGKTQTAVHAALCDNFDTPRVMEAIRELVSQGNAYIRESG  428 (586)
T ss_pred             CHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             20210385899999860037899999987424518899999998734338888731


No 47 
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains. This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway.
Probab=99.65  E-value=2.5e-15  Score=122.99  Aligned_cols=104  Identities=17%  Similarity=0.326  Sum_probs=88.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHCCC---CC-----CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf             3210114556778899999763024---66-----789756999999999999999998816889999999999999999
Q gi|254780802|r  671 NKGVDSTYQFIQQIWRLIYNAKDEL---QT-----SSTKKDISLISKSTKFLERIEENYQNLSFNKAVANIHELVNVISK  742 (869)
Q Consensus       671 ~~~i~~~~rfl~kl~~l~~~~~~~~---~~-----~~~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai~~i~~f~n~ls~  742 (869)
                      ++.++++++|++|+||...+.....   .+     .....|+||+++++.++++++++|++|+|++|++.|++|+... +
T Consensus         1 eerve~~r~F~nKLWNa~rF~~~~~~~~~~~~~~~~l~~~DrWIls~l~~~i~~v~~~~e~y~f~~a~~~l~~F~w~~-d   79 (117)
T cd07375           1 EERLKQARAFLNRLYRLLSFFRKALGGTQPKWDNELLEEADRELLARLQEFIKRTTNALEALDPTTAVQELFKFTNEL-N   79 (117)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-H
T ss_conf             999999999998999999999856887888656322776279999999899999999999278999999999999936-9


Q ss_pred             HHHHHCCCCCCC-----CHHHHHHHHHHHHHHHHCCCH
Q ss_conf             998621100022-----179999999999999972234
Q gi|254780802|r  743 PLMEIAKKKSNA-----DRISTIRYILEKLIIMMSPMI  775 (869)
Q Consensus       743 ~y~~~~k~~~~~-----~~~~~l~~vl~~l~~lLaPi~  775 (869)
                      ||++.+|++...     ..+++|++++..+++|||||+
T Consensus        80 wYie~~K~r~~~e~~~~~~~~~L~~vl~~~lkLlhPFt  117 (117)
T cd07375          80 WYLDELKPALQTEELREAVLAVLRAALVVLTKLLAPFT  117 (117)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             99999656304827579999999999999999819999


No 48 
>TIGR00435 cysS cysteinyl-tRNA synthetase; InterPro: IPR002308   The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases .   Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=99.51  E-value=1e-13  Score=111.94  Aligned_cols=127  Identities=20%  Similarity=0.259  Sum_probs=96.5

Q ss_pred             CEECCCCEEEECCCCCCHHHCCCCCCCCCCCC-CCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHH---HHHHHHHHHHHH
Q ss_conf             11048970640474210000001222210012-34633566655301332111113432101145---567788999997
Q gi|254780802|r  615 FRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIK-SYGADTARLFVLSDSPPDRDIIWSNKGVDSTY---QFIQQIWRLIYN  690 (869)
Q Consensus       615 ~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~-~yGaD~lRl~~~~~~~~~~d~~~s~~~i~~~~---rfl~kl~~l~~~  690 (869)
                      -..-.|++.+..++||||||+||++...|+++ .|.+-+|||++++ +-+-.-++||++.++.+.   +-+++|.+.+..
T Consensus       398 ~~yW~H~G~~~id~eKMSKSLgNF~~v~D~L~q~~d~~~lR~~~l~-~HYr~pLdf~e~~l~~aksfe~~~~~l~~~l~~  476 (660)
T TIGR00435       398 AKYWLHNGFLMIDNEKMSKSLGNFITVRDVLKQNYDPEVLRYLLLS-VHYRSPLDFSEELLEAAKSFENALERLYKALRN  476 (660)
T ss_pred             EEEEEECCEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH-HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8999851778976721651555688888687427689999999876-553145674788999998899999999999998


Q ss_pred             HHCCCCCCC------CH---HHHHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHH
Q ss_conf             630246678------97---56999999999999999998-816889999999999999999
Q gi|254780802|r  691 AKDELQTSS------TK---KDISLISKSTKFLERIEENY-QNLSFNKAVANIHELVNVISK  742 (869)
Q Consensus       691 ~~~~~~~~~------~~---~D~~ils~~~~~i~~v~~~~-e~~~f~~ai~~i~~f~n~ls~  742 (869)
                      ....+.+..      .+   ........+...-.+|..+| ++|.+..|++.|.+++...++
T Consensus       477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Eseskvhsa~~dDlN~a~Al~vL~el~~~~N~  538 (660)
T TIGR00435       477 LDTDLAYSKEFGENKDPKNVDEKEFEAAFEESESKVHSAMDDDLNTANALAVLFELAKSINK  538 (660)
T ss_pred             HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
T ss_conf             75310342223424356642256578664320357788875057806899999999998400


No 49 
>cd00802 class_I_aaRS_core Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.39  E-value=3.1e-13  Score=108.67  Aligned_cols=73  Identities=34%  Similarity=0.621  Sum_probs=69.8

Q ss_pred             EEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             998077897898740047797789999997771898556768814020589999998099999999999999999999
Q gi|254780802|r   37 FVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQLQ  114 (869)
Q Consensus        37 ~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~~~  114 (869)
                      +++.++|||||.||+||+++.++.|+++||+     +|.|+.|+|+||+|++..+.+.+..|+++++++++.++++++
T Consensus         1 ~i~~~~p~ptG~lHiGh~~~~~~~~~~ar~~-----~~~~~~~idd~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~   73 (142)
T cd00802           1 VITRPGPYPTGPLHIGHARTALLNDVLARYG-----NVLFILGIDDTGLPIEDKAEKEGKLPKEEVEENIEEIKEDLK   73 (142)
T ss_pred             CEECCCCCCCCCCCHHHHHHHHHHHHHHHHC-----CCEEEEEECCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHCE
T ss_conf             9141488989964188999999999999981-----998999865799200116788444889999999999998652


No 50 
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases. This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA.
Probab=99.36  E-value=2.5e-11  Score=95.64  Aligned_cols=117  Identities=22%  Similarity=0.311  Sum_probs=91.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             43210114556778899999763024667---897569999999999999999988168899999999999999999986
Q gi|254780802|r  670 SNKGVDSTYQFIQQIWRLIYNAKDELQTS---STKKDISLISKSTKFLERIEENYQNLSFNKAVANIHELVNVISKPLME  746 (869)
Q Consensus       670 s~~~i~~~~rfl~kl~~l~~~~~~~~~~~---~~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai~~i~~f~n~ls~~y~~  746 (869)
                      +.+.+....++++|+.+++....+...+.   ..+.|.+++++++.+++++.++|++++|++|++.++++++..++|..+
T Consensus         2 N~~L~~~~GNLv~Rv~~~~~k~~~~~i~~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~al~~i~~l~~~~N~y~~~   81 (129)
T cd07957           2 NSELANNLGNLVNRTLNMASKYFGGVVPEFGGLTEEDEELLEEAEELLEEVAEAMEELEFRKALEEIMELARAANKYIDE   81 (129)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             88888799779999999999827997999877764139999999999999999998524999999999999999999996


Q ss_pred             HCCCCC-----CCCHHHHHH---HHHHHHHHHHCCCHHHHHHHHHHHC
Q ss_conf             211000-----221799999---9999999997223438999999982
Q gi|254780802|r  747 IAKKKS-----NADRISTIR---YILEKLIIMMSPMIPHLAEECWQLL  786 (869)
Q Consensus       747 ~~k~~~-----~~~~~~~l~---~vl~~l~~lLaPi~PhiaEEiw~~L  786 (869)
                      ....+.     ......+++   ++++.+.++|+||||++|+++|++|
T Consensus        82 ~~PW~l~K~~~~~~~~~vl~~~l~~~~~l~ilL~P~mP~~s~~i~~~L  129 (129)
T cd07957          82 TAPWKLAKEEDPERLATVLYVLLELLRILAILLSPFMPETAEKILDQL  129 (129)
T ss_pred             CCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHC
T ss_conf             587988823029999999999999999999999757018999999719


No 51 
>TIGR00395 leuS_arch leucyl-tRNA synthetase; InterPro: IPR004493   The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases .    Leucyl tRNA synthetase (6.1.1.4 from EC) is an alpha monomer that belongs to class Ia. There are two different families of leucyl-tRNA synthetases. This family includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases.; GO: 0000166 nucleotide binding, 0004823 leucine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006429 leucyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=99.18  E-value=4.4e-12  Score=100.77  Aligned_cols=179  Identities=19%  Similarity=0.305  Sum_probs=115.7

Q ss_pred             CCHHHHHHHHHHHHHHHCCCCCCHHH--HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCC
Q ss_conf             56466548889999740467752022--2111000111221123222223422333468463474200011100100022
Q gi|254780802|r  397 MTNTEALQAVMSHLEKQNIKNSPIGK--RKINFRLRDWCISRQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTL  474 (869)
Q Consensus       397 ~~~~~~~~~i~~~l~~~~~~~~~~~~--~~~~~~l~DW~ISRqr~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~  474 (869)
                      .+.+.=++.+.++|+++.+-......  +....+|+||..||.+--||.|| |                     |..|++
T Consensus       555 Ys~~~WK~~a~~CLegM~~ip~~~k~~F~~~idWL~dwAc~Rr~GLGTrlP-w---------------------de~wli  612 (1109)
T TIGR00395       555 YSDESWKELAHECLEGMRIIPEEVKEAFEEKIDWLKDWACARRKGLGTRLP-W---------------------DEKWLI  612 (1109)
T ss_pred             CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCC-C---------------------CCCEEE
T ss_conf             451568999998743373276888888877666423630461246777787-5---------------------675477


Q ss_pred             CCCCCCHHHHHHHHHHCC-------CCCC---CCCCCCCC-CCCCCCCCCCCCCCCC-----CCCCCCH-----HHHHHH
Q ss_conf             454210024564211013-------6764---43564323-4566643332233555-----6544101-----356641
Q gi|254780802|r  475 PGNPLENHPTWKKIFCVK-------CGSE---ALRETDTM-DTFVDSSWYYMRYMTP-----HAKDPIN-----KELVRQ  533 (869)
Q Consensus       475 ~~~~l~~~~~~~~~~~~~-------~~~~---~~r~~dvl-d~w~dS~~~~~~~~~~-----~~~~~~~-----~e~~~~  533 (869)
                        ++|++++.|+..|+.-       .|.+   +--..|-| |.+||-  -+++-...     .+..|.+     ++.|+|
T Consensus       613 --ESLsDSTIY~aYYtiA~~l~~~~~g~EiGPlGisaD~mt~E~fDy--ifl~~gdV~K~Ak~t~ip~~~~~~lR~eF~Y  688 (1109)
T TIGR00395       613 --ESLSDSTIYMAYYTIAKYLNKDDLGNEIGPLGISADQMTDEFFDY--IFLGKGDVDKVAKNTNIPLELIEKLREEFEY  688 (1109)
T ss_pred             --ECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCHHHHHH--HHCCCCCHHHHHHHHCCCHHHHHHHHHHCCE
T ss_conf             --127623256789999999852145776455544420057445224--3238871567765407888899875543410


Q ss_pred             CCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHCCC
Q ss_conf             14334401455544332023455532013478732232002222355323224332358700130620221025
Q gi|254780802|r  534 WFPVDQYIGGIEHAVLHLLYARFFAHILKKIGYIEIDEPFKRLFTQGMVVHETYYQLEGIKKKYLKPDEVILRN  607 (869)
Q Consensus       534 ~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~g~~~~~~pf~~l~~~G~v~~~~~~~~~~~~~~~~~p~~~~~~~  607 (869)
                      |||+|++++|+|.+-+||.++=|.|..++.-.    ..| +.+...|++.- .+.+||+|.|+.+...+++..+
T Consensus       689 ~YPlD~r~SgKDLi~NHLtFyiF~HvAiFP~~----~WP-rGi~vnG~~~L-eg~KmSkSkGn~l~l~~~vekf  756 (1109)
T TIGR00395       689 WYPLDWRISGKDLIPNHLTFYIFHHVAIFPEK----FWP-RGIVVNGYVLL-EGKKMSKSKGNVLTLKEAVEKF  756 (1109)
T ss_pred             ECCCCCCCCCCCCCHHHHHHHHHHEEEECCCC----CCC-CEEEEEEEEEE-ECCCCCCCCCCCHHHHHHHHHH
T ss_conf             05601002431010346776644002424879----897-61799757887-1734054547622388999872


No 52 
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.05  E-value=1.7e-08  Score=76.22  Aligned_cols=122  Identities=20%  Similarity=0.258  Sum_probs=88.0

Q ss_pred             CCCCCCHHHCCCCCCCCCCCCCCC----------------------HHHHHHHHHHCCCCCCCCCCCCCCHHHHHH----
Q ss_conf             474210000001222210012346----------------------335666553013321111134321011455----
Q gi|254780802|r  626 GPLEKMSKSKKNVIDPMKVIKSYG----------------------ADTARLFVLSDSPPDRDIIWSNKGVDSTYQ----  679 (869)
Q Consensus       626 ~~g~KMSKSkGNvi~p~~~i~~yG----------------------aD~lRl~~~~~~~~~~d~~~s~~~i~~~~r----  679 (869)
                      .+|.||||..||+|+++++++.-|                      .|++||++++ ..+..++.|+++.+...-+    
T Consensus       379 ~~g~kmStR~G~~vtl~dllde~~era~~~~~~~~~~~~~iA~~vgi~Avry~~l~-~~~~~~~~Fd~d~~lsfegNt~p  457 (577)
T COG0018         379 GEGVKMSTRAGNVVTLDDLLDEAGERAPEEMEEKEEKNEEIAEVVGIDAVRYADLS-RSRDKDYVFDWDKALSFEGNTAP  457 (577)
T ss_pred             CCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCEEEHHHHHHCCCCCCH
T ss_conf             87763422488657899999999887666765432115777777524067899886-28999947539999744599721


Q ss_pred             HH----HHHHHHHHHHHCC-CCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             67----7889999976302-466-------78975699999999999999999881688999999999999999999862
Q gi|254780802|r  680 FI----QQIWRLIYNAKDE-LQT-------SSTKKDISLISKSTKFLERIEENYQNLSFNKAVANIHELVNVISKPLMEI  747 (869)
Q Consensus       680 fl----~kl~~l~~~~~~~-~~~-------~~~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai~~i~~f~n~ls~~y~~~  747 (869)
                      ++    -|+.+++..+.+. ...       -.....+.++..+.++-.-+.++.++++-+..+.-++++...|++||-..
T Consensus       458 YvQYA~ARi~SIlrka~e~~~~~~~~~~~~l~~~~E~~L~~~L~~fp~vl~~aa~~~~Ph~la~YL~~LA~~Fn~fY~~~  537 (577)
T COG0018         458 YVQYAHARICSILRKAGEDELDLSTEADALLTELEERELVKKLLEFPEVLEEAAEELEPHRLANYLYDLAGSFNSFYNAC  537 (577)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf             59999999999998544434553322210106827999999999849999999985695599999999999999998508


Q ss_pred             C
Q ss_conf             1
Q gi|254780802|r  748 A  748 (869)
Q Consensus       748 ~  748 (869)
                      .
T Consensus       538 ~  538 (577)
T COG0018         538 P  538 (577)
T ss_pred             C
T ss_conf             7


No 53 
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=98.97  E-value=5.9e-08  Score=72.51  Aligned_cols=120  Identities=23%  Similarity=0.272  Sum_probs=88.6

Q ss_pred             CCCCCCHHHCCCCCCCCCCCCC----------------------CCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH----
Q ss_conf             4742100000012222100123----------------------46335666553013321111134321011455----
Q gi|254780802|r  626 GPLEKMSKSKKNVIDPMKVIKS----------------------YGADTARLFVLSDSPPDRDIIWSNKGVDSTYQ----  679 (869)
Q Consensus       626 ~~g~KMSKSkGNvi~p~~~i~~----------------------yGaD~lRl~~~~~~~~~~d~~~s~~~i~~~~r----  679 (869)
                      .+|.|||+.+||+|.++|++++                      -|.|++||++++ .++..++.|+.+.+...-.    
T Consensus       373 ~~~~kMStR~G~~v~L~dlldea~~~a~~~~~~~~e~~~~ia~~Vg~~Airy~~L~-~~~~~~~~Fd~d~~l~~~g~t~~  451 (570)
T PRK01611        373 GEGVKMSTRAGNVVTLDDLLDEAVERARELVEESEEEKEEIAKAVGIDAVRYFDLS-RSRDSDYDFDLDLALSFEGNNPP  451 (570)
T ss_pred             CCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCHHHHHHHHHC-CCCCCCCEECHHHHHHHCCCCCH
T ss_conf             86764424678745899999999999998763377678899976341040264440-68888822268998632389825


Q ss_pred             HHH----HHHHHHHHHHCCCCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             677----889999976302466-------7897569999999999999999988168899999999999999999986
Q gi|254780802|r  680 FIQ----QIWRLIYNAKDELQT-------SSTKKDISLISKSTKFLERIEENYQNLSFNKAVANIHELVNVISKPLME  746 (869)
Q Consensus       680 fl~----kl~~l~~~~~~~~~~-------~~~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai~~i~~f~n~ls~~y~~  746 (869)
                      +++    |+.+++..+......       -..+..+.++..+.++-.-+..+.++++-+..+.-++++...|++||-.
T Consensus       452 YiQYa~AR~~SIlrK~~~~~~~~~~~~~~l~~~~E~~Li~~l~~fp~vv~~a~~~~~Ph~l~~YL~~La~~Fn~fY~~  529 (570)
T PRK01611        452 YVQYAHARICSILRKAAEEGLAAAADLSLLTEEEELELIKKLAEFPEVVESAAEELEPHRIANYLYELAGAFHSFYNA  529 (570)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf             788999999999986312345443433346998999999999887999999999688189999999999999999851


No 54 
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=98.87  E-value=4.9e-08  Score=73.02  Aligned_cols=120  Identities=17%  Similarity=0.160  Sum_probs=84.1

Q ss_pred             CCCCCCHHHCCCCCCCCCCCCC-------------------------CCHHHHHHHHHHCCCCCCCCCCCCCCHHHH---
Q ss_conf             4742100000012222100123-------------------------463356665530133211111343210114---
Q gi|254780802|r  626 GPLEKMSKSKKNVIDPMKVIKS-------------------------YGADTARLFVLSDSPPDRDIIWSNKGVDST---  677 (869)
Q Consensus       626 ~~g~KMSKSkGNvi~p~~~i~~-------------------------yGaD~lRl~~~~~~~~~~d~~~s~~~i~~~---  677 (869)
                      .+|+||||.+||+|.+++++++                         -|+|++||++++ ..+.+++.|+.+.+...   
T Consensus       367 ~~g~kMStR~G~~v~l~dll~e~~~~a~~~~~~r~~~~~~~~~ia~~VG~~Airy~~L~-~~~~~~~~FD~d~~~~~~~~  445 (562)
T PRK12451        367 KDGKKMSTRKGRVILLEEVLEEAIELAKQNIEEKNPNLKQKEEVAKQVGVGAVIFHDLK-NERMHNIEFSLENMLKFEGE  445 (562)
T ss_pred             CCCCCEEECCCCEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHH-CCCCCCCCCCHHHHHHCCCC
T ss_conf             48863020578756899999999999999987527771328999998531130134443-16787776789999742578


Q ss_pred             -HHHHH----HHHHHHHHHHCCCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             -55677----889999976302466----7897569999999999999999988168899999999999999999986
Q gi|254780802|r  678 -YQFIQ----QIWRLIYNAKDELQT----SSTKKDISLISKSTKFLERIEENYQNLSFNKAVANIHELVNVISKPLME  746 (869)
Q Consensus       678 -~rfl~----kl~~l~~~~~~~~~~----~~~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai~~i~~f~n~ls~~y~~  746 (869)
                       .-+++    |+-+++.........    ...+..+.++..+.+.-.-+..+.++++-+..+.-++++...|++||-.
T Consensus       446 ~~PYiQYAhARi~SIlrk~~~~~~~~~~~l~~~~e~~Li~~L~~fp~vv~~aa~~~~Ph~l~~Yl~~LA~~Fh~fY~~  523 (562)
T PRK12451        446 TGPYVQYTHARACSILRKESVEFETCTFALKDDHSWSVVKLLNKFPQVIEAAFNKNEPSVISKYVLDVAQSFNKYYGN  523 (562)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf             873699999999999974457755433446997999999999988999999998499379999999999999999806


No 55 
>cd00672 CysRS_core This is the catalytic core domain of cysteinyl tRNA synthetase (CysRS).  This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=98.81  E-value=8.3e-10  Score=85.18  Aligned_cols=87  Identities=20%  Similarity=0.195  Sum_probs=74.6

Q ss_pred             CCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf             83899807789789874004779778999999777189855676881402058999999809999999999999999999
Q gi|254780802|r   34 KKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQL  113 (869)
Q Consensus        34 ~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~~  113 (869)
                      .+--+..==|.+-+.+|+||+|+++.-|++.||.+-.||+|.|.+-.--=+=.|...|.+.++...+.++++++.+.+++
T Consensus        19 ~~V~~Y~CGPTVYd~~HiGhaR~~v~~D~l~R~L~~~gy~V~~V~NITDIDDKII~~A~~~~~~~~ela~~y~~~f~~d~   98 (213)
T cd00672          19 GLVRMYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAREEGLSIKEVAEYYTAEFFEDM   98 (213)
T ss_pred             CEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             97889978996889987653425768999999999639935899972675189999999839999999999999999999


Q ss_pred             HHCCCEE
Q ss_conf             9819176
Q gi|254780802|r  114 QSIGLSI  120 (869)
Q Consensus       114 ~~lG~~~  120 (869)
                      ++||+--
T Consensus        99 ~~Lni~~  105 (213)
T cd00672          99 KALNVLP  105 (213)
T ss_pred             HHHCCCC
T ss_conf             9828999


No 56 
>pfam00750 tRNA-synt_1d tRNA synthetases class I (R). Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only arginyl tRNA synthetase.
Probab=98.78  E-value=7.4e-08  Score=71.83  Aligned_cols=59  Identities=32%  Similarity=0.474  Sum_probs=50.4

Q ss_pred             CCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             88389980778978987400477977899999977718985567688140205899999
Q gi|254780802|r   33 KKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAA   91 (869)
Q Consensus        33 ~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~   91 (869)
                      +++..|-..=|+|+|+|||||+||-++.|.++|-.+-.||+|....=..-.|..+-..+
T Consensus        18 ~kkI~vE~~S~Np~kplHvGHlR~aiiGdslarll~~~G~~V~r~~yvnD~G~Qi~~l~   76 (345)
T pfam00750        18 NKKVVVEFSSPNPAKPIHVGHLRSTIIGDALSRLLEFLGYDVVRENYVGDWGTQFGMLI   76 (345)
T ss_pred             CCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHH
T ss_conf             98899985389999885041015279999999999987995989987686489999999


No 57 
>cd00672 CysRS_core This is the catalytic core domain of cysteinyl tRNA synthetase (CysRS).  This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=98.73  E-value=4.3e-08  Score=73.41  Aligned_cols=49  Identities=33%  Similarity=0.293  Sum_probs=40.8

Q ss_pred             CEEEECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             70640474210000001222210012346335666553013321111134
Q gi|254780802|r  621 SKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDIIWS  670 (869)
Q Consensus       621 ~~~~~~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~~~~~~~~~~d~~~s  670 (869)
                      ++.+..+|+|||||+||++++.+++++|+++++|+++++ +..-+.++||
T Consensus       165 ~g~l~~~g~KMSKSlgN~~~i~dll~~~~~~~~R~~lls-~hYR~~l~fs  213 (213)
T cd00672         165 TGHLTIDGEKMSKSLGNFITVRDALKKYDPEVLRLALLS-SHYRSPLDYS  213 (213)
T ss_pred             HHHHHHCCCEECCCCCCEEEHHHHHHCCCHHHHHHHHHH-CCCCCCCCCC
T ss_conf             457872756403457875269999843999999999982-7378987899


No 58 
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=98.64  E-value=4.7e-07  Score=66.30  Aligned_cols=119  Identities=22%  Similarity=0.327  Sum_probs=81.1

Q ss_pred             CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH-------------------
Q ss_conf             8883899807789789874004779778999999777189855676881402058999999-------------------
Q gi|254780802|r   32 NKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAR-------------------   92 (869)
Q Consensus        32 ~~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~-------------------   92 (869)
                      .+++..|-..=|+|+|+|||||+||-++.|.++|-.+..||+|....=-.-.|..+...+.                   
T Consensus       116 ~~~kv~VEf~S~Np~kplHvGH~R~aiiGdslaril~~~G~~V~r~~yvnD~G~Qi~~l~~~~~~~~~~~~~~~~l~~~Y  195 (570)
T PRK01611        116 KGKKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLAASLELEEAAAKGLSDLERRY  195 (570)
T ss_pred             CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf             99779998448999998623358878999999999998399079999978742799999999999604888706679999


Q ss_pred             ----------------------HHCCCHH------HHHHHHHHHHHHHHHHCCCEEECCCCEECCCHHHHH--HHHHHHH
Q ss_conf             ----------------------8099999------999999999999999819176646982147735999--9999999
Q gi|254780802|r   93 ----------------------EHNVHPK------MWTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYH--CQQLLFL  142 (869)
Q Consensus        93 ----------------------e~~~~~~------~~~~~~i~~~k~~~~~lG~~~DW~r~y~T~d~~y~~--~v~w~f~  142 (869)
                                            +...++.      ......++.+++.+++||+.+|-    ...+-.++.  .+..++.
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~~~~~l~~~~~~l~~l~I~fD~----~~~Es~~~~~~~i~~v~~  271 (570)
T PRK01611        196 REAKKEPDEDPEEYAGEYIVKLAAPGDEELEELWRKAVDISLDEIKEDLDRLGVKFDV----FFSESSLYNDGKVEEVVE  271 (570)
T ss_pred             HHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC----CCCHHHHHHCCCHHHHHH
T ss_conf             9985034658545578999998717988899999999999999999999974876442----126688985774499999


Q ss_pred             HHHHCCCEEECC
Q ss_conf             999889634122
Q gi|254780802|r  143 DFMKHNVIVRKT  154 (869)
Q Consensus       143 ~L~~kGliyrg~  154 (869)
                      .|.++|++|+..
T Consensus       272 ~L~~~~~~~e~d  283 (570)
T PRK01611        272 DLKEKGLLYESD  283 (570)
T ss_pred             HHHHCCCEEECC
T ss_conf             998679589318


No 59 
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=98.61  E-value=1e-06  Score=63.98  Aligned_cols=121  Identities=16%  Similarity=0.234  Sum_probs=84.6

Q ss_pred             CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH-------------------
Q ss_conf             8883899807789789874004779778999999777189855676881402058999999-------------------
Q gi|254780802|r   32 NKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAR-------------------   92 (869)
Q Consensus        32 ~~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~-------------------   92 (869)
                      .+++..+=.-=|+|||+|||||+|+-++.|.++|-.+-.||+|..-.=-.-.|..|-..+.                   
T Consensus       111 ~~k~v~vEfvSaNPtgpLHVGH~R~aiiGdsLariL~~~G~~V~reyYinD~G~Qi~~l~~~~~~~~~~~~~~~~~~~~l  190 (562)
T PRK12451        111 CEKTVVIDYSSPNIAKPFSMGHLRSTMIGNSLKHIAEKCGYEVVGINYIGDWGTQFGKLITAYKKWGNEAVVKEDPIREL  190 (562)
T ss_pred             CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCHHHH
T ss_conf             99879998528999988624224627999999999998698599999747730899999999998544011246757899


Q ss_pred             --------H---H----------------CCCHH------HHHHHHHHHHHHHHHHCCCEEECCCCEECCCHHHHHHHHH
Q ss_conf             --------8---0----------------99999------9999999999999998191766469821477359999999
Q gi|254780802|r   93 --------E---H----------------NVHPK------MWTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQL  139 (869)
Q Consensus        93 --------e---~----------------~~~~~------~~~~~~i~~~k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w  139 (869)
                              +   .                ..++.      ......++.+++.+++||+.+|-   | ..+-.|...+..
T Consensus       191 ~~~y~~~~~~~~~~~~~~~~~~~~~~~le~~d~~~~~~~~~~~~~~l~~~~~~l~~l~v~fD~---~-~~Es~~~~~~~~  266 (562)
T PRK12451        191 FKLYVQFHEEVKDDEELEEEGRAWFKKLEEGDEEAVELWNWFRHESLKEFSRIYELLGVEFTN---F-QGEAFYNNLMED  266 (562)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE---E-ECHHHHHHHHHH
T ss_conf             999999998650480068999999998766899999999999999999999999992972014---5-232445124789


Q ss_pred             HHHHHHHCCCEEECCEE
Q ss_conf             99999988963412213
Q gi|254780802|r  140 LFLDFMKHNVIVRKTAQ  156 (869)
Q Consensus       140 ~f~~L~~kGliyrg~~p  156 (869)
                      .+..|.++|++|+..--
T Consensus       267 ~i~~L~~~g~~~e~dGA  283 (562)
T PRK12451        267 FIGILEEHDLLEESEGA  283 (562)
T ss_pred             HHHHHHHCCCEEECCCC
T ss_conf             99999977978947997


No 60 
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=98.47  E-value=1.3e-06  Score=63.18  Aligned_cols=63  Identities=22%  Similarity=0.262  Sum_probs=47.2

Q ss_pred             EEECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC--CCHHHHHHHHHHHH
Q ss_conf             6404742100000012222100123463356665530133211111343--21011455677889
Q gi|254780802|r  623 VVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDIIWSN--KGVDSTYQFIQQIW  685 (869)
Q Consensus       623 ~~~~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~~~~~~~~~~d~~~s~--~~i~~~~rfl~kl~  685 (869)
                      ++.++|+|||||+||+|++.|.++-+..+++.+|+.....+.+.+.|+.  +.+.++.+++++.+
T Consensus       278 fLd~~G~KmSsSkGngit~~ewL~~~~PEsl~rfm~~~pkpaK~l~fd~ipk~~DEY~~~~~~y~  342 (513)
T PRK00750        278 FLDGKGQKISKSKGNGISIEDWLEYAPPESLARFMYARPKPAKRLYFDVIPKLVDEYDKFLRKYA  342 (513)
T ss_pred             EECCCCCEECCCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf             98379866305689723899999755999999999718898840156566677899999998851


No 61 
>TIGR00456 argS arginyl-tRNA synthetase; InterPro: IPR001278   The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases .   Arginyl-tRNA synthetase (6.1.1.19 from EC) has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available . ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=98.42  E-value=6.3e-06  Score=58.56  Aligned_cols=204  Identities=21%  Similarity=0.232  Sum_probs=132.9

Q ss_pred             HHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHCCCCCCCCCCCEEC
Q ss_conf             40145554433202345553201347873223200222235532322433235870013062022102567775441104
Q gi|254780802|r  539 QYIGGIEHAVLHLLYARFFAHILKKIGYIEIDEPFKRLFTQGMVVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLS  618 (869)
Q Consensus       539 ~~i~g~d~~~~~~~~~r~~~~~l~~~g~~~~~~pf~~l~~~G~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  618 (869)
                      +++-|+||. +|+  .|++ .++..+|++.-. +-=..+..||+....|.+|+-..|+.+..+.+..             
T Consensus       353 i~V~gsdh~-~h~--~q~~-~~~e~LG~~~~~-~~L~~~~f~~v~~~~GKkmkTR~G~~i~ld~ll~-------------  414 (600)
T TIGR00456       353 IYVWGSDHK-LHI--AQVF-AILEKLGYLSKK-KELEHLEFGMVPLGSGKKMKTRRGNVISLDNLLD-------------  414 (600)
T ss_pred             EEEEECCHH-HHH--HHHH-HHHHHCCCCCCC-CCEEEEEEEEEECCCCCCCCCCCCCCEEHHHHHH-------------
T ss_conf             987405188-899--9999-999971653788-6168998764325788854345566022344689-------------


Q ss_pred             CCCEEEECCCCCCHHHCCCCCCCC-----------CCCCCCCHHHHHHHHHHCCCCCCCCCCCCC-CHH-----------
Q ss_conf             897064047421000000122221-----------001234633566655301332111113432-101-----------
Q gi|254780802|r  619 DNSKVVIGPLEKMSKSKKNVIDPM-----------KVIKSYGADTARLFVLSDSPPDRDIIWSNK-GVD-----------  675 (869)
Q Consensus       619 ~~~~~~~~~g~KMSKSkGNvi~p~-----------~~i~~yGaD~lRl~~~~~~~~~~d~~~s~~-~i~-----------  675 (869)
                                 ||||.-+|+|.-+           ++++.=|.||+|+++++ ..++.|+.|+++ .+.           
T Consensus       415 -----------e~~~RA~~~~~~~~~~~~~~e~~e~~a~~vG~gAvry~~l~-~~~~~~~~Fd~d~~~L~f~~n~~pY~Q  482 (600)
T TIGR00456       415 -----------EASKRAGNVITKRNTDLEQDEAEEKVADAVGIGAVRYADLS-KNRETHYVFDWDTAMLSFEGNTAPYIQ  482 (600)
T ss_pred             -----------HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH-HCCCCCCEEECCCHHHCCCCCCCCHHH
T ss_conf             -----------99999999996110135222037899999736799999997-278988155012011115788743258


Q ss_pred             HHHHHHHHHHH-HHHHHHC----CCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC-
Q ss_conf             14556778899-9997630----246678-9756999999999999999998816889999999999999999998621-
Q gi|254780802|r  676 STYQFIQQIWR-LIYNAKD----ELQTSS-TKKDISLISKSTKFLERIEENYQNLSFNKAVANIHELVNVISKPLMEIA-  748 (869)
Q Consensus       676 ~~~rfl~kl~~-l~~~~~~----~~~~~~-~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai~~i~~f~n~ls~~y~~~~-  748 (869)
                      -++-+++.+.+ -......    ...... .+..+.|+..+.++-.-|.++.+..+.+..++-+|++...|++||-..- 
T Consensus       483 YAhaR~~Silr~~~~~~~~~~~~~~~~~~~~~~E~~L~~~L~~fp~~~~~~~~~~~p~~l~~Yly~LA~~F~sfY~~~~v  562 (600)
T TIGR00456       483 YAHARICSILRKKAEIDGEKLIADDFLLLKEEKEKELLKLLLQFPEVIEEAAEEREPHVLTNYLYELAKLFSSFYKACPV  562 (600)
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             88999999876310233134553200036888899999998564899999998547188899999997764236641778


Q ss_pred             -CCC---CCCCHHH---HHHHHHHHHHHHHC
Q ss_conf             -100---0221799---99999999999972
Q gi|254780802|r  749 -KKK---SNADRIS---TIRYILEKLIIMMS  772 (869)
Q Consensus       749 -k~~---~~~~~~~---~l~~vl~~l~~lLa  772 (869)
                       ...   ....|+.   ..+.+|+..+.||-
T Consensus       563 ~~~~~~~~~~~RL~L~~~~~~~L~n~L~LLG  593 (600)
T TIGR00456       563 LDAENEELAKARLALLKATRQTLKNGLELLG  593 (600)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             8986266899999999999999999887608


No 62 
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.39  E-value=6.4e-06  Score=58.51  Aligned_cols=151  Identities=20%  Similarity=0.296  Sum_probs=101.3

Q ss_pred             CHHHHHHHHHHHHHHCCCCCCCCCCCC-CCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH
Q ss_conf             689998999999998598036767888-8389980778978987400477977899999977718985567688140205
Q gi|254780802|r    7 SPQETDSIWQSAWYDSNIFKAENGKNK-KKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGM   85 (869)
Q Consensus         7 ~~~~iE~kwq~~W~~~~~fe~~~~~~~-~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~Gl   85 (869)
                      ++....+..++...+.+-|-...+.++ ++..|-.-=|+|+|+|||||+||-++.|+++|-.+..||+|....=..-.|.
T Consensus        89 ~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSaNptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~G~  168 (577)
T COG0018          89 SPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSANPTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDWGT  168 (577)
T ss_pred             CHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHH
T ss_conf             88999999999997333556744368998799987479999985233235368899999999983997667866785799


Q ss_pred             HHHHHH--------------------------------HH-HCC---------------CH-----HHHHHHHHHHHHHH
Q ss_conf             899999--------------------------------98-099---------------99-----99999999999999
Q gi|254780802|r   86 PAENAA--------------------------------RE-HNV---------------HP-----KMWTYQNIKVMRKQ  112 (869)
Q Consensus        86 Pie~~~--------------------------------~e-~~~---------------~~-----~~~~~~~i~~~k~~  112 (869)
                      -+...+                                .+ ...               ++     +..+...+..+++.
T Consensus       169 Q~~~l~~~~~~~~~e~~~~~~~~~~~lg~~y~~i~~~~~~~~~~~~~~~~~~~~k~e~~d~~~~lw~~~v~~~l~~~k~~  248 (577)
T COG0018         169 QIGMLALSYEKRGREALGLTPEPDGYLGEYYVKIAKDLEEDPGNDEEEAREEVEKLESGDEEAELWRKFVDLSLEGIKET  248 (577)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999554101377772068899999999999748461267889999988647757899999999999999999


Q ss_pred             HHHCCCEEECCCCEECCCHHHH-HHHHHHHHHHHHCCCEEE--CCEEEECC
Q ss_conf             9981917664698214773599-999999999998896341--22133214
Q gi|254780802|r  113 LQSIGLSIDWSKDFATCDVDYY-HCQQLLFLDFMKHNVIVR--KTAQVNWD  160 (869)
Q Consensus       113 ~~~lG~~~DW~r~y~T~d~~y~-~~v~w~f~~L~~kGliyr--g~~pV~wc  160 (869)
                      +.+||+.+|   .|......|+ ..+.-+...|.++|++|+  |..+|.|.
T Consensus       249 l~~l~V~fD---~~~~E~e~~~~~~~~~vv~~L~~~~~~~e~~GA~~vdl~  296 (577)
T COG0018         249 LDRLGVKFD---VYDSEGESFYNGKVEKVVEDLEEKGLLYEDDGALVVDLL  296 (577)
T ss_pred             HHHHCCCCE---EEECCCHHHHCCCHHHHHHHHHHCCCEEEECCEEEEEHH
T ss_conf             999295300---132342655266499999999866977600995898643


No 63 
>cd00671 ArgRS_core This is the catalytic core domain of Arginyl tRNA synthetase (ArgRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The other subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found  primarily in archaea and a few bacteria,  lacks both the KMSKS motif and the HIGH loop lysine.
Probab=98.39  E-value=2.9e-06  Score=60.93  Aligned_cols=54  Identities=33%  Similarity=0.535  Sum_probs=46.3

Q ss_pred             EEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             980778978987400477977899999977718985567688140205899999
Q gi|254780802|r   38 VLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAA   91 (869)
Q Consensus        38 i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~   91 (869)
                      |-..=|+|+|+|||||+||-++.|.++|-.+-.|++|....=..-.|+.+-..+
T Consensus         4 vEf~S~Np~kplHvGHlR~aiiGdslaril~~~G~~V~r~~yvnD~G~Qi~~l~   57 (267)
T cd00671           4 VEFVSANPTGPLHVGHLRNAIIGDSLARILEFAGYDVTREYYINDWGRQIGLLI   57 (267)
T ss_pred             EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHH
T ss_conf             885589999985031036389999999999987995889885078609999999


No 64 
>KOG0437 consensus
Probab=98.34  E-value=9.3e-08  Score=71.14  Aligned_cols=150  Identities=16%  Similarity=0.260  Sum_probs=87.1

Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCC---------
Q ss_conf             21110001112211232222234223334684634742000111001000224542100245642110136---------
Q gi|254780802|r  423 RKINFRLRDWCISRQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTWKKIFCVKC---------  493 (869)
Q Consensus       423 ~~~~~~l~DW~ISRqr~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l~~~~~~~~~~~~~~---------  493 (869)
                      +.+..+|..|..||.---|+.|| |                     |..|++  +.|++...|+..+...+         
T Consensus       559 E~tLdWL~~wacsRsyGLGTrlP-W---------------------D~qyLv--ESLSDSTIYmAyYTvaHll~~d~~g~  614 (1080)
T KOG0437         559 EDTLDWLGQWACSRSYGLGTRLP-W---------------------DEQYLV--ESLSDSTIYMAYYTVAHLLHRDLYGK  614 (1080)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCC-C---------------------CHHHHH--HHCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             88889987510120116777788-7---------------------678887--76031289999999999987764067


Q ss_pred             -CCCCCCCCCCCCCCCCCCCCCCCCCCC--------CCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf             -764435643234566643332233555--------65441013566411433440145554433202345553201347
Q gi|254780802|r  494 -GSEALRETDTMDTFVDSSWYYMRYMTP--------HAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKI  564 (869)
Q Consensus       494 -~~~~~r~~dvld~w~dS~~~~~~~~~~--------~~~~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~  564 (869)
                       .+++--.+   |+.-|..|-+.....+        ......-++.|++|||.|++++|.|..-+|+.|.-+.|-.|...
T Consensus       615 ~~~plgi~~---~QMtdeVwdYvF~~~~~~k~t~i~~e~L~~lr~eF~Y~YPiDlrvsGKDLi~NHLtfflynHvAl~~~  691 (1080)
T KOG0437         615 VEGPLGIKP---DQMTDEVWDYVFLNEPYPKNTAIPEEALSNLRREFEYFYPIDLRVSGKDLIPNHLTFFLYNHVALFPE  691 (1080)
T ss_pred             CCCCCCCCH---HHCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEEHHHHCCC
T ss_conf             766577894---65478988786506998767784099999999763100301344234213523136755400231540


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHC
Q ss_conf             87322320022223553232243323587001306202210
Q gi|254780802|r  565 GYIEIDEPFKRLFTQGMVVHETYYQLEGIKKKYLKPDEVIL  605 (869)
Q Consensus       565 g~~~~~~pf~~l~~~G~v~~~~~~~~~~~~~~~~~p~~~~~  605 (869)
                      .    ..| +.+..+|+.+- ..-+||++.||+......+-
T Consensus       692 k----~WP-kgiraNGHLmL-NsEKMSKSTGNfmTL~qaie  726 (1080)
T KOG0437         692 K----KWP-KGIRANGHLML-NSEKMSKSTGNFMTLEQAIE  726 (1080)
T ss_pred             C----CCC-CCCCCCCEEEE-CCHHCCCCCCCEEEHHHHHH
T ss_conf             0----286-53111766773-31220545677245999898


No 65 
>cd00674 LysRS_core_class_I This is the catalytic core domain of lysyl tRNA synthetase (LysRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=98.31  E-value=3.3e-07  Score=67.39  Aligned_cols=50  Identities=40%  Similarity=0.642  Sum_probs=42.0

Q ss_pred             CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             888389980778978987400477977899999977718985567688140
Q gi|254780802|r   32 NKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDA   82 (869)
Q Consensus        32 ~~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~   82 (869)
                      +++.+.+-.| -.|||.+|||+.+-.+..|+++|-.|-+|+.|.+.+.||-
T Consensus        17 ~k~~~v~~tG-~~PSG~~HIGn~rEv~~~~~V~ral~~~g~~~~~i~~~DD   66 (354)
T cd00674          17 GKEKYVVASG-ISPSGLIHIGNFREVVTADAVRRALRDLGFEVRLIYSWDD   66 (354)
T ss_pred             CCCCEEEECC-CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEC
T ss_conf             8985899478-7999886320550178899999999975996799998405


No 66 
>TIGR00456 argS arginyl-tRNA synthetase; InterPro: IPR001278   The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases .   Arginyl-tRNA synthetase (6.1.1.19 from EC) has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available . ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=98.29  E-value=1.8e-06  Score=62.29  Aligned_cols=66  Identities=30%  Similarity=0.520  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             989999999985980367678888389980778978987400477977899999977718985567
Q gi|254780802|r   11 TDSIWQSAWYDSNIFKAENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLH   76 (869)
Q Consensus        11 iE~kwq~~W~~~~~fe~~~~~~~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~   76 (869)
                      +|.=+|.-=.+.+.|=..+-.+.+|-+|=.-=|+|||+||+||+||=+++|+++|=.++.||+|..
T Consensus        95 ~~~l~~~~~~~~e~yG~~~~~~~~ki~~EfsSaNp~gplH~GHlR~aiIGD~L~r~l~~~G~~V~r  160 (600)
T TIGR00456        95 LENLIQKILEQKEKYGSKKLKESKKIIIEFSSANPAGPLHIGHLRNAIIGDSLARILEFLGYDVIR  160 (600)
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf             999988785012024676657870799987658889761100002577788999999875970798


No 67 
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.15  E-value=6.8e-08  Score=72.08  Aligned_cols=102  Identities=19%  Similarity=0.138  Sum_probs=59.7

Q ss_pred             EEEEEECCCCCCCCCEEEEECCCCCCHHHHHCCHHH--HHHH-HHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEE
Q ss_conf             653200134443232003302443203454131458--9998-8653111124555430255323786103777774157
Q gi|254780802|r  248 ILVYTTRPETIFGASFIAIAVDHSISEKLSCDNTDI--KEFC-DEEKQKGTSLSVLDKTEKKGIYTGIHVKHPLNPNVVI  324 (869)
Q Consensus       248 l~~~TtrPeTl~g~~~i~v~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~~~~~P~~~~~~i  324 (869)
                      ....|.+|||++|.++.||.++..+......++...  ..-+ .....+....+.+ ....+..|+|..+.+|.+     
T Consensus       208 ~~l~~~wPE~Vk~mq~nWIg~s~g~~v~f~~~~~~~~~~~~vfttr~dt~~gvt~~-~~a~~h~lv~~~~~~~~~-----  281 (814)
T COG0495         208 DKLATLWPETVKGMQRNWIGPSEGYEVAFVVDGEEEIVSIEVFTTRPDTLFGVTYV-VLAPEHPLVGKLVTNPQT-----  281 (814)
T ss_pred             HHHCCCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCEEEEECCCCCCCCEEEE-EEECCCHHHHHHHCCCCC-----
T ss_conf             65424795669989872707888758998517764410024466357311674899-970786678987418651-----


Q ss_pred             EEEECCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             76311234545333222111346721101221
Q gi|254780802|r  325 PVYIANFVFMNYGTGAIFGCPFADQRDMDFAK  356 (869)
Q Consensus       325 pv~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~  356 (869)
                       +.+++||++..|||+|+++|+|.+.|+....
T Consensus       282 -~~~a~fv~~~~~~~~~~~~~~~~~k~gv~~g  312 (814)
T COG0495         282 -PLVAEFVDECKGTGVVESVPAHAEKDGVFLG  312 (814)
T ss_pred             -HHHHHHHHHHCCCCCEEEEECCCCCCCEECC
T ss_conf             -6699999886178715630456877631136


No 68 
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=98.11  E-value=2.2e-05  Score=54.87  Aligned_cols=98  Identities=20%  Similarity=0.299  Sum_probs=67.0

Q ss_pred             CCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf             83899807789789874004779778999999777189855676881402058999999809999999999999999999
Q gi|254780802|r   34 KKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQL  113 (869)
Q Consensus        34 ~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~~  113 (869)
                      +.-++|==||.|||.||+|||++-.+-..+||-  ..|+-+|+   ||-|--..+           .-..++.+.+.+++
T Consensus        98 ~gkV~tRFaP~P~G~LHiGhar~al~N~~~Ak~--~~G~~iLR---~eDTdp~~~-----------r~~~e~~~~I~~dl  161 (566)
T PRK04156         98 KGKVVMRFAPNPSGPLHLGHARAAILNDEYAKR--YGGKFILR---FEDTDPRTK-----------RPDPEAYDMIREDL  161 (566)
T ss_pred             CCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEE---ECCCCCCCC-----------CCCHHHHHHHHHHH
T ss_conf             883899528699987618999999996999998--09989999---658883325-----------56378999999999


Q ss_pred             HHCCCEEECCCCEECCC--HHHHHHHHHHHHHHHHCCCEEEC
Q ss_conf             98191766469821477--35999999999999988963412
Q gi|254780802|r  114 QSIGLSIDWSKDFATCD--VDYYHCQQLLFLDFMKHNVIVRK  153 (869)
Q Consensus       114 ~~lG~~~DW~r~y~T~d--~~y~~~v~w~f~~L~~kGliyrg  153 (869)
                      +=||+  +|+.+|.+.|  ..|++.    -.+|-++|+.|.-
T Consensus       162 ~WLG~--~~de~~~qSdr~~~y~~~----a~~Li~~G~AY~c  197 (566)
T PRK04156        162 KWLGV--KPDEVVIQSDRLEIYYEY----ARKLIEMGGAYVC  197 (566)
T ss_pred             HHHCC--CCCCCEEHHHHHHHHHHH----HHHHHHCCCEEEC
T ss_conf             98299--978016657619999999----9999987992777


No 69 
>pfam01921 tRNA-synt_1f tRNA synthetases class I (K). This family includes only lysyl tRNA synthetases from prokaryotes.
Probab=98.04  E-value=4.2e-06  Score=59.80  Aligned_cols=49  Identities=29%  Similarity=0.306  Sum_probs=40.3

Q ss_pred             CCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             88389980778978987400477977899999977718985567688140
Q gi|254780802|r   33 KKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDA   82 (869)
Q Consensus        33 ~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~   82 (869)
                      +.++.+-.| -.|||.+|||+++--+..|+++|..|.+|++|.+...||-
T Consensus        18 ~~~~v~~tG-~~PSG~~HIGnfrEv~~~~~V~~al~~~g~~~~~i~~~DD   66 (355)
T pfam01921        18 KGEILVETG-IGPSGLPHIGNFREVLRTDAVRRALRKRGFETRLIYFSDD   66 (355)
T ss_pred             CCCEEEECC-CCCCCCCEEECCCHHHHHHHHHHHHHHCCCCEEEEEEECC
T ss_conf             985899526-6899886421560179999999999974987699998215


No 70 
>cd00807 Gln_GluRS_non_core Glutaminyl-tRNA synthetase (GlnRS) and non-descriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Gln or Glu, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-descriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=98.01  E-value=1.4e-05  Score=56.23  Aligned_cols=90  Identities=20%  Similarity=0.242  Sum_probs=67.1

Q ss_pred             EEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             98077897898740047797789999997771898556768814020589999998099999999999999999999819
Q gi|254780802|r   38 VLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQLQSIG  117 (869)
Q Consensus        38 i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~~~~lG  117 (869)
                      +|==+|-|||.||+||+++-.+--.+||-  ..|+=+|+.=-.                +|.....++.+.+.++++-||
T Consensus         3 ~tRFAPsPtG~lHiG~artal~n~l~Ar~--~~G~~iLRiEDT----------------D~~r~~~e~~~~I~~~L~wLG   64 (238)
T cd00807           3 VTRFPPEPNGYLHIGHAKAAILNFEYAKR--YGGKLILRFDDT----------------NPKKEDEEAYDSILEDLEWLG   64 (238)
T ss_pred             EEECCCCCCCCCCHHHHHHHHHHHHHHHH--HCCEEEEEECCC----------------CCCCCCCHHHHHHHHHHHHHC
T ss_conf             69608898986438999999999999998--299699986778----------------987676168999999999848


Q ss_pred             CEEECCCCEECCCH--HHHHHHHHHHHHHHHCCCEE
Q ss_conf             17664698214773--59999999999999889634
Q gi|254780802|r  118 LSIDWSKDFATCDV--DYYHCQQLLFLDFMKHNVIV  151 (869)
Q Consensus       118 ~~~DW~r~y~T~d~--~y~~~v~w~f~~L~~kGliy  151 (869)
                      +  +|+.+|...+-  .|++.    ..+|.++|+.|
T Consensus        65 l--~~De~~~QS~r~~~y~~~----a~~Li~~G~AY   94 (238)
T cd00807          65 I--KPDEITYASDYFDLYYEY----AEKLIKMGKAY   94 (238)
T ss_pred             C--CCCCCEECCCCHHHHHHH----HHHHHHCCCCC
T ss_conf             9--999315636679999999----99999879987


No 71 
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=97.92  E-value=0.00015  Score=49.12  Aligned_cols=58  Identities=24%  Similarity=0.232  Sum_probs=42.0

Q ss_pred             CCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCC-----HHHHHHHHHHH
Q ss_conf             474210000001222210012346335666553013321111134321-----01145567788
Q gi|254780802|r  626 GPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDIIWSNKG-----VDSTYQFIQQI  684 (869)
Q Consensus       626 ~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~~~~~~~~~~d~~~s~~~-----i~~~~rfl~kl  684 (869)
                      .+++|||||+||+|+++|+++-+-...|||++ +...|.+.++|+-+.     +..+.|+.+..
T Consensus       273 kg~~~mSsSkG~~i~~~dwlev~~pE~lry~~-~r~kP~r~~~~d~~~~il~lvDEydr~e~~Y  335 (521)
T COG1384         273 KGGGKMSSSKGNVISLSDWLEVAPPEVLRYLI-ARTKPNRHIDFDFDLGILKLVDEYDRLERIY  335 (521)
T ss_pred             CCCCCCCCCCCCEECHHHHHHHCCHHHEEEEE-EECCCCCCEECCCCCCHHHHHHHHHHHHHHH
T ss_conf             48866556878578599998753984733235-4058874433178877447789999999987


No 72 
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=97.79  E-value=5.7e-05  Score=52.01  Aligned_cols=93  Identities=22%  Similarity=0.355  Sum_probs=65.4

Q ss_pred             EEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             99807789789874004779778999999777189855676881402058999999809999999999999999999981
Q gi|254780802|r   37 FVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQLQSI  116 (869)
Q Consensus        37 ~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~~~~l  116 (869)
                      +.+==+|-|||.||+|||++-.+--.+||-+  .|+-+|+.=-.                +|..-..++.+.+.++++=|
T Consensus        10 v~tRFAPsPtG~LHiG~artAl~n~~~Ar~~--~G~fiLRiEDT----------------D~~R~~~e~~~~I~~~L~WL   71 (472)
T COG0008          10 VRTRFAPSPTGYLHIGHARTALLNYLYARKY--GGKFILRIEDT----------------DPERETPEAEDAILEDLEWL   71 (472)
T ss_pred             EEEEECCCCCCCCCHHHHHHHHHHHHHHHHH--CCEEEEEECCC----------------CCCCCCHHHHHHHHHHHHHC
T ss_conf             4897795999854268899999979999983--99799996479----------------98878878999999999866


Q ss_pred             CCEEECCC-CEECCC--HHHHHHHHHHHHHHHHCCCEEEC
Q ss_conf             91766469-821477--35999999999999988963412
Q gi|254780802|r  117 GLSIDWSK-DFATCD--VDYYHCQQLLFLDFMKHNVIVRK  153 (869)
Q Consensus       117 G~~~DW~r-~y~T~d--~~y~~~v~w~f~~L~~kGliyrg  153 (869)
                      |+  +|+. +|...+  ..|++.    -.+|.++|+.|.-
T Consensus        72 Gl--~wde~~~~QS~r~~~Y~~~----~~~Li~~G~AY~c  105 (472)
T COG0008          72 GL--DWDEGPYYQSERFDIYYEY----AEKLIEKGKAYVC  105 (472)
T ss_pred             CC--CCCCCEEEHHHHHHHHHHH----HHHHHHCCCEEEE
T ss_conf             88--8897614364239999999----9999987996886


No 73 
>pfam00749 tRNA-synt_1c tRNA synthetases class I (E and Q), catalytic domain. Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only glutamyl and glutaminyl tRNA synthetases. In some organisms, a single glutamyl-tRNA synthetase aminoacylates both tRNA(Glu) and tRNA(Gln).
Probab=97.78  E-value=7.6e-05  Score=51.17  Aligned_cols=92  Identities=17%  Similarity=0.318  Sum_probs=62.9

Q ss_pred             EECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             80778978987400477977899999977718985567688140205899999980999999999999999999998191
Q gi|254780802|r   39 LEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQLQSIGL  118 (869)
Q Consensus        39 ~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~~~~lG~  118 (869)
                      +==.|-|||.||+||++|-.+.-.+||-  ..|.=+|+.=-.|                +.-...++.+.+.++++-||+
T Consensus         4 tRFAPSPTG~lHiG~~rtAl~n~l~Ar~--~~G~fiLRIEDtD----------------~~R~~~e~~~~I~~dL~wLGl   65 (314)
T pfam00749         4 TRFAPSPTGYLHIGHARTALFNYLFAKN--YNGKFILRFDDTD----------------PEREKPEYEESILEDLKWLGI   65 (314)
T ss_pred             EECCCCCCCCCCHHHHHHHHHHHHHHHH--HCCEEEEEECCCC----------------CCCCCHHHHHHHHHHHHHHCC
T ss_conf             9728898986448999999999999998--0998999968789----------------886876899999999999537


Q ss_pred             EEECCC-CEECCCHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf             766469-8214773599999999999998896341
Q gi|254780802|r  119 SIDWSK-DFATCDVDYYHCQQLLFLDFMKHNVIVR  152 (869)
Q Consensus       119 ~~DW~r-~y~T~d~~y~~~v~w~f~~L~~kGliyr  152 (869)
                      .  |+. +|.-.+-  ...=.-...+|.++|++|.
T Consensus        66 ~--wDe~~~~QS~r--~~~Y~~~~~~L~~~g~aY~   96 (314)
T pfam00749        66 K--WDEKPYYQSDR--FDIYYKYAEELIEKGLAYV   96 (314)
T ss_pred             C--CCCCCEEHHCC--HHHHHHHHHHHHHCCCCCC
T ss_conf             8--99883552020--9999999999997499522


No 74 
>cd00418 GlxRS_core Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers.  Archaea, cellular organelles, and some bacteria lack GlnRS.  In these cases, the "non-descriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The descriminating form of GluRS differs from GlnRS and the non-descriminating form of GluRS in their C-terminal anti-codon binding domains.
Probab=97.75  E-value=6.3e-05  Score=51.74  Aligned_cols=86  Identities=20%  Similarity=0.391  Sum_probs=60.7

Q ss_pred             EECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             80778978987400477977899999977718985567688140205899999980999999999999999999998191
Q gi|254780802|r   39 LEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQLQSIGL  118 (869)
Q Consensus        39 ~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~~~~lG~  118 (869)
                      |==+|-|||.||+||+++-.+--.+||-  ..|.-+|+.=                ..+|.....++.+.+.++++-||+
T Consensus         4 tRFAPsPtG~LHiG~ar~al~n~~~Ak~--~~G~~~LRie----------------DTD~~r~~~e~~~~I~~dL~wLGl   65 (223)
T cd00418           4 TRFAPSPTGYLHIGHARAALLNYLYAKK--YGGKFILRFD----------------DTDPEREVEEAEDSILEDLKWLGI   65 (223)
T ss_pred             EEECCCCCCCCCHHHHHHHHHHHHHHHH--HCCEEEEEEC----------------CCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             8708898985428999999999999998--5998999723----------------688640188899999999999189


Q ss_pred             EEECCC-CEECCC--HHHHHHHHHHHHHHHHCC
Q ss_conf             766469-821477--359999999999999889
Q gi|254780802|r  119 SIDWSK-DFATCD--VDYYHCQQLLFLDFMKHN  148 (869)
Q Consensus       119 ~~DW~r-~y~T~d--~~y~~~v~w~f~~L~~kG  148 (869)
                        +|+. ++.+.+  +.|++.    ..+|.++|
T Consensus        66 --~~d~~~~~QS~r~~~y~~~----~~~Li~~G   92 (223)
T cd00418          66 --KWDEGPYYQSDRFDIYYEY----AEKLIEEG   92 (223)
T ss_pred             --CCCCCEEEHHHHHHHHHHH----HHHHHHCC
T ss_conf             --9998685387589999999----99997569


No 75 
>pfam01921 tRNA-synt_1f tRNA synthetases class I (K). This family includes only lysyl tRNA synthetases from prokaryotes.
Probab=97.74  E-value=0.00014  Score=49.33  Aligned_cols=51  Identities=18%  Similarity=0.150  Sum_probs=40.4

Q ss_pred             EEECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCH
Q ss_conf             6404742100000012222100123463356665530133211111343210
Q gi|254780802|r  623 VVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDIIWSNKGV  674 (869)
Q Consensus       623 ~~~~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~~~~~~~~~~d~~~s~~~i  674 (869)
                      +++.+|+|||||+||++++.++++-+...+|||++ ....+.+.++++-+.|
T Consensus       271 ~~~kgg~KmSsSkGn~is~~e~L~~~~pE~Lr~l~-~~~~P~~a~~l~fd~i  321 (355)
T pfam01921       271 ILLKGGGKMSSSKGNGITIEEWLEYAPPESLRFLM-FRVKPKKAKRLDFDVI  321 (355)
T ss_pred             EEECCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHH-CCCCCCCCEEECCCHH
T ss_conf             99669971046889876999999866999999998-0428884512073044


No 76 
>TIGR00463 gltX_arch glutamyl-tRNA synthetase; InterPro: IPR004526   The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases .    Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of E. coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure . ; GO: 0000166 nucleotide binding, 0004818 glutamate-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006424 glutamyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=97.72  E-value=1.1e-05  Score=56.84  Aligned_cols=110  Identities=21%  Similarity=0.268  Sum_probs=72.8

Q ss_pred             CEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHH--HHHHHHHHHHHHH
Q ss_conf             38998077897898740047797789999997771898556768814020589999998099999--9999999999999
Q gi|254780802|r   35 KYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPK--MWTYQNIKVMRKQ  112 (869)
Q Consensus        35 kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~--~~~~~~i~~~k~~  112 (869)
                      --+++==+|.|||+||||||+.-++=+-+||-.  .|+-.++-=                ..+|+  .-..++-+.+.++
T Consensus       100 G~VV~RFaPnPsGpLhiGhArAa~lN~~fa~~Y--~GklIlR~d----------------DTdP~tkr~~~Eayd~i~eD  161 (600)
T TIGR00463       100 GEVVMRFAPNPSGPLHIGHARAAILNQYFAKKY--EGKLILRFD----------------DTDPRTKRVKPEAYDMILED  161 (600)
T ss_pred             CCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHC--CCCEEEEEE----------------CCCCCCCCCCHHHHHHHHHH
T ss_conf             735773185454587523354223204668541--881799975----------------58788788872466524877


Q ss_pred             HHHCCCEEECCCCEECCC--HHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCHHHHHCCC
Q ss_conf             998191766469821477--3599999999999998896341221332147767677898984385
Q gi|254780802|r  113 LQSIGLSIDWSKDFATCD--VDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQVINGR  176 (869)
Q Consensus       113 ~~~lG~~~DW~r~y~T~d--~~y~~~v~w~f~~L~~kGliyrg~~pV~wcp~~~t~la~~Ev~~g~  176 (869)
                      ++=||+-.|  +--...|  +.||+-         -..||.+|..   ||+.|.|==--..+..|+
T Consensus       162 LdwLG~k~D--ev~y~Sdr~~~yYdY---------~~kLIe~G~A---Y~C~c~~Eefre~r~~G~  213 (600)
T TIGR00463       162 LDWLGVKGD--EVVYQSDRIEIYYDY---------ARKLIEMGKA---YVCDCSPEEFRELRNKGV  213 (600)
T ss_pred             HHHCCCCEE--EEEEEECCHHHHHHH---------HHHHHHCCCC---EECCCCCHHHHHHHCCCC
T ss_conf             875284200--689830530156899---------9999866983---432798446888633888


No 77 
>cd00674 LysRS_core_class_I This is the catalytic core domain of lysyl tRNA synthetase (LysRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=97.71  E-value=0.00014  Score=49.31  Aligned_cols=48  Identities=25%  Similarity=0.297  Sum_probs=40.3

Q ss_pred             EEECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCC-CCCCCCCCC
Q ss_conf             6404742100000012222100123463356665530133-211111343
Q gi|254780802|r  623 VVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSP-PDRDIIWSN  671 (869)
Q Consensus       623 ~~~~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~~~~~~~-~~~d~~~s~  671 (869)
                      +.+.+|+|||||+||+++++++++-+...+|||+++ ..| +...+.|+.
T Consensus       268 ~~~kgg~KmSsSkGn~it~~e~L~~~~pE~lr~l~~-~~p~~~k~i~fD~  316 (354)
T cd00674         268 IGLKGGGKMSSSKGNVITPRDWLEVAPPESLRFLYA-RRKNPAKHIGFDL  316 (354)
T ss_pred             EEECCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHH-HCCCCCCCCCCCC
T ss_conf             990699872246786128999997659999999986-0998553224675


No 78 
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=97.66  E-value=0.00024  Score=47.72  Aligned_cols=96  Identities=18%  Similarity=0.342  Sum_probs=65.7

Q ss_pred             CCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             88389980778978987400477977899999977718985567688140205899999980999999999999999999
Q gi|254780802|r   33 KKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQ  112 (869)
Q Consensus        33 ~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~  112 (869)
                      +..-++|==||-|||.||+|||..-.+-.-+|+-  ..|+-.|   =||-|-             |..-..++++.++++
T Consensus        26 ~~gkVvtRFpPePnG~LHiGHaka~~lN~~~a~~--y~G~~~L---RfDDTN-------------P~~e~~e~~~~I~~d   87 (556)
T PRK05347         26 KHTKVHTRFPPEPNGYLHIGHAKSICLNFGLAQD--YGGKCNL---RFDDTN-------------PEKEDQEYVDSIKED   87 (556)
T ss_pred             CCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEE---EECCCC-------------CCCCCHHHHHHHHHH
T ss_conf             7683998049899987618888999866999997--0998999---835899-------------874548999999999


Q ss_pred             HHHCCCEEECCCC-EECCC--HHHHHHHHHHHHHHHHCCCEEE
Q ss_conf             9981917664698-21477--3599999999999998896341
Q gi|254780802|r  113 LQSIGLSIDWSKD-FATCD--VDYYHCQQLLFLDFMKHNVIVR  152 (869)
Q Consensus       113 ~~~lG~~~DW~r~-y~T~d--~~y~~~v~w~f~~L~~kGliyr  152 (869)
                      ++-||+.  |... +.|.|  ..|++.    -.+|-++|+.|-
T Consensus        88 ~~wLg~~--~~~~i~~~Sd~f~~~y~~----a~~LI~~g~AYv  124 (556)
T PRK05347         88 VRWLGFD--WGGELRYASDYFDQLYEY----AVELIKKGKAYV  124 (556)
T ss_pred             HHHCCCC--CCCEEEEEHHHHHHHHHH----HHHHHHCCCCEE
T ss_conf             9874998--898278813429999999----999986488135


No 79 
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=97.61  E-value=9.7e-05  Score=50.45  Aligned_cols=92  Identities=18%  Similarity=0.244  Sum_probs=60.4

Q ss_pred             EEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             98077897898740047797789999997771898556768814020589999998099999999999999999999819
Q gi|254780802|r   38 VLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQLQSIG  117 (869)
Q Consensus        38 i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~~~~lG  117 (869)
                      ++==.|.|||.||+||++|-..--.+||-+  .|.=+|+.==.|                +.-...++.+.+.++++-||
T Consensus         6 v~RFAPSPTG~LHlG~~rtAl~n~l~Ar~~--~G~~iLRIEDtD----------------~~R~~~~~~~~Il~~L~wlG   67 (299)
T PRK05710          6 VGRFAPSPSGPLHFGSLVSALLSYLDARAQ--GGRWLVRIEDID----------------PPREVPGAAAAILADLEWLG   67 (299)
T ss_pred             CEEECCCCCCCCCHHHHHHHHHHHHHHHHH--CCEEEEEECCCC----------------CCCCCHHHHHHHHHHHHHHC
T ss_conf             571796999853289999999999999982--998999867789----------------76587689999999999956


Q ss_pred             CEEECCCC-EECCCHHHHHHHHHHHHHHHHCCCEE
Q ss_conf             17664698-21477359999999999999889634
Q gi|254780802|r  118 LSIDWSKD-FATCDVDYYHCQQLLFLDFMKHNVIV  151 (869)
Q Consensus       118 ~~~DW~r~-y~T~d~~y~~~v~w~f~~L~~kGliy  151 (869)
                      +.  |+.+ +.-.+  ....=+..+.+|.++|++|
T Consensus        68 l~--wD~~~~~QS~--R~~~Y~~~~~~L~~~g~aY   98 (299)
T PRK05710         68 LH--WDGPVRRQSE--RHDAYRAALDRLAAAGLVY   98 (299)
T ss_pred             CC--CCCCCHHHHH--HHHHHHHHHHHHHHCCCCE
T ss_conf             88--8874048885--8999999999999769902


No 80 
>PRK12410 glutamyl-tRNA synthetase; Provisional
Probab=97.57  E-value=0.00028  Score=47.31  Aligned_cols=87  Identities=17%  Similarity=0.235  Sum_probs=62.2

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf             78978987400477977899999977718985567688140205899999980999999999999999999998191766
Q gi|254780802|r   42 FPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQLQSIGLSID  121 (869)
Q Consensus        42 pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~~~~lG~~~D  121 (869)
                      -|-|||.||+||++|-..-=.+||=  ..|.=+|+.=-.|                ..-.+..+.+.+.++++-+|+  +
T Consensus         5 APSPTG~lHiG~~rtAl~n~l~Ar~--~~G~fiLRIEDtD----------------~~R~~~~~~~~i~~~L~wlGl--~   64 (433)
T PRK12410          5 APSPTGDMHIGNLRAAIFNYIVAKQ--QNEDFIIRIEDTD----------------KERNIEGKDKEILEILNLFGI--S   64 (433)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEECCCC----------------CCCCCHHHHHHHHHHHHHCCC--C
T ss_conf             9797996427899999999999985--5998999878789----------------998986999999999998599--9


Q ss_pred             CCCCEECCC--HHHHHHHHHHHHHHHHCCCEEE
Q ss_conf             469821477--3599999999999998896341
Q gi|254780802|r  122 WSKDFATCD--VDYYHCQQLLFLDFMKHNVIVR  152 (869)
Q Consensus       122 W~r~y~T~d--~~y~~~v~w~f~~L~~kGliyr  152 (869)
                      |+.+|.-.+  ..|.    ....+|.++|.+|+
T Consensus        65 wDe~~~QS~R~~~Y~----~~~~~L~~~g~aY~   93 (433)
T PRK12410         65 WDKLVYQSENLKFHR----QMAEKLLSEKKAFA   93 (433)
T ss_pred             CCCCEECCCCHHHHH----HHHHHHHHCCCEEE
T ss_conf             998831257899999----99999998099689


No 81 
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=97.56  E-value=0.00057  Score=45.16  Aligned_cols=89  Identities=20%  Similarity=0.220  Sum_probs=66.2

Q ss_pred             EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCC--------CCHHHHHHHHHH-C----------
Q ss_conf             89980778978987400477977899999977718-985567688140--------205899999980-9----------
Q gi|254780802|r   36 YFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRAS-GYSVLHPMGWDA--------FGMPAENAAREH-N----------   95 (869)
Q Consensus        36 f~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~-G~~Vl~~~G~d~--------~GlPie~~~~e~-~----------   95 (869)
                      .++...==-|||.+|||+.+--+..|+++|=.|-+ |+.|.+...||-        .++|-....+++ +          
T Consensus        30 ~vv~~tG~~pSG~~HiG~~~Ev~~~~~V~~al~~~~g~~~~~i~~~Dd~D~lRkvp~~~p~~e~~~~~lg~Pl~~iPdP~  109 (513)
T PRK00750         30 EVLFETGYGPSGLPHIGTFGEVARTTMVRRALRDLTGIKTRLIYFSDDMDGLRKVPDNVPNQEMLAEHLGKPLTSVPDPF  109 (513)
T ss_pred             EEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCC
T ss_conf             39993686899886230452266699999999984599668999851776543468899984999987499664079988


Q ss_pred             CCHHHHHHHHHHHHHHHHHHCCCEEECCC
Q ss_conf             99999999999999999998191766469
Q gi|254780802|r   96 VHPKMWTYQNIKVMRKQLQSIGLSIDWSK  124 (869)
Q Consensus        96 ~~~~~~~~~~i~~~k~~~~~lG~~~DW~r  124 (869)
                      -.+..|++++...+.+.+.++|+-.++-+
T Consensus       110 g~~~Sya~h~~~~~~~~l~~~gi~~e~~s  138 (513)
T PRK00750        110 GTHESYAEHNNARLREFLDKFGFEYEFIS  138 (513)
T ss_pred             CCCCCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             87576999999999999998398339976


No 82 
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=97.48  E-value=0.00039  Score=46.33  Aligned_cols=89  Identities=18%  Similarity=0.184  Sum_probs=61.9

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf             78978987400477977899999977718985567688140205899999980999999999999999999998191766
Q gi|254780802|r   42 FPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQLQSIGLSID  121 (869)
Q Consensus        42 pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~~~~lG~~~D  121 (869)
                      -|-|||.||+||+||-..--.+||-  ..|.=+|+.=-.|                ..-.+..+.+.+.++++-+|+  |
T Consensus         8 APSPTG~lHiG~~rtAl~n~l~Ar~--~~G~fiLRIEDtD----------------~~R~~~~~~~~i~~~L~WlGl--~   67 (461)
T PRK12558          8 APSPTGYIHIGNARTALFNWLFARA--HGGKFILRYDDTD----------------VERSKQEYADAIADDLRWLGL--D   67 (461)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEECCCC----------------CCCCCHHHHHHHHHHHHHCCC--C
T ss_conf             9898985327899999999999996--1998999877689----------------876887999999999998799--9


Q ss_pred             CCCCEECCCHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf             4698214773599999999999998896341
Q gi|254780802|r  122 WSKDFATCDVDYYHCQQLLFLDFMKHNVIVR  152 (869)
Q Consensus       122 W~r~y~T~d~~y~~~v~w~f~~L~~kGliyr  152 (869)
                      |+-+|.-..-  ...=+....+|.++|+.|+
T Consensus        68 wDe~~~QS~r--~~~Y~~~~~~L~~~g~aY~   96 (461)
T PRK12558         68 PDRVEYQSKR--FDRYAEAAEKLKAAGLLYA   96 (461)
T ss_pred             CCCCCHHHCC--HHHHHHHHHHHHHCCCCEE
T ss_conf             9987416439--9999999999998699365


No 83 
>TIGR00435 cysS cysteinyl-tRNA synthetase; InterPro: IPR002308   The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases .   Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=97.15  E-value=0.00011  Score=50.02  Aligned_cols=109  Identities=19%  Similarity=0.208  Sum_probs=64.3

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHH-HCCCCCCCCCCC-CC---CCHH------HHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             789789874004779778999999777-189855676881-40---2058------999999809999999999999999
Q gi|254780802|r   42 FPYPSGNIHMGHLRNYVIGDVVARFMR-ASGYSVLHPMGW-DA---FGMP------AENAAREHNVHPKMWTYQNIKVMR  110 (869)
Q Consensus        42 pPy~nG~lHiGH~~~~t~~Dv~aRy~r-m~G~~Vl~~~G~-d~---~GlP------ie~~~~e~~~~~~~~~~~~i~~~k  110 (869)
                      =|++=...|||||||++.=|++.||.| ..||.|-|+.=+ |.   +|==      |-..|.+++.......+..     
T Consensus        29 GpTVYd~~HiGhaR~~i~fD~~~R~L~d~~GY~V~yV~NiTDIGhltGdlddGDDKIIk~A~~~~~~~~~~kend-----  103 (660)
T TIGR00435        29 GPTVYDYAHIGHARTAIVFDVLRRYLEDYLGYEVQYVQNITDIGHLTGDLDDGDDKIIKRAREEGETVEEVKEND-----  103 (660)
T ss_pred             CCHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHCC-----
T ss_conf             731762103034663025788899998875886788864312000016777750489999875156478874012-----


Q ss_pred             HHHHHCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCHHHH
Q ss_conf             99998191766469821477359999999999999889634122133214776767789898
Q gi|254780802|r  111 KQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQV  172 (869)
Q Consensus       111 ~~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~pV~wcp~~~t~la~~Ev  172 (869)
                                   ..|.   ..-..-|.-++-+--.|....+|...- =--..+|=||+++.
T Consensus       104 -------------tkfn---atvvdkvktalfqyinknftiqGseik-tieefetWlsnadt  148 (660)
T TIGR00435       104 -------------TKFN---ATVVDKVKTALFQYINKNFTIQGSEIK-TIEEFETWLSNADT  148 (660)
T ss_pred             -------------CHHH---HHHHHHHHHHHHHHHHHCCEECCCHHH-HHHHHHHHHHCCCC
T ss_conf             -------------2000---256778899999987520011252000-36777776520331


No 84 
>pfam00750 tRNA-synt_1d tRNA synthetases class I (R). Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only arginyl tRNA synthetase.
Probab=97.10  E-value=0.00018  Score=48.67  Aligned_cols=46  Identities=30%  Similarity=0.343  Sum_probs=36.9

Q ss_pred             EECCCCCCHHHCCCCCCCCCCCCC--------------------------CCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             404742100000012222100123--------------------------46335666553013321111134
Q gi|254780802|r  624 VIGPLEKMSKSKKNVIDPMKVIKS--------------------------YGADTARLFVLSDSPPDRDIIWS  670 (869)
Q Consensus       624 ~~~~g~KMSKSkGNvi~p~~~i~~--------------------------yGaD~lRl~~~~~~~~~~d~~~s  670 (869)
                      +..+|+|||+.+||+|++++++++                          -|.+|+||++++ ..+.+++.|+
T Consensus       273 ~~~dgkkMStR~G~~v~l~dLl~ea~~~a~~~~~~~~~~~~~~~~~ia~~Vgi~Airy~~L~-~~~~k~i~FD  344 (345)
T pfam00750       273 LGKDGKRMSTRAGNVVTLDDLLDEALERAMDIKEKNRDLTADELEAVATAIGVDAARYADLS-SNRDTDYIFD  344 (345)
T ss_pred             ECCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCCCC
T ss_conf             76899616778877578999999999999999973668987789999987707676599986-5889898358


No 85 
>cd00802 class_I_aaRS_core Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.06  E-value=0.00026  Score=47.52  Aligned_cols=63  Identities=21%  Similarity=0.354  Sum_probs=38.1

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             23456664333223355565441013566411433440145554433202345553201347873223200222235532
Q gi|254780802|r  503 TMDTFVDSSWYYMRYMTPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIGYIEIDEPFKRLFTQGMV  582 (869)
Q Consensus       503 vld~w~dS~~~~~~~~~~~~~~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~g~~~~~~pf~~l~~~G~v  582 (869)
                      .+..|+|+++.++.....            ..+|+|+++.|.||.. |..+.+.....+..      ..|+..++.+|++
T Consensus        71 ~~~y~~~~~~~~~~~~~~------------~~~~~~~~~~G~D~~~-~~~~~~~~~~~l~~------~~~~~~~~~~~~l  131 (142)
T cd00802          71 DLKYWFDSAADDLLLLGY------------PFYPVDLVLGGKDQIP-HLELTRDLLKALGG------KFPPPEVLHHGLL  131 (142)
T ss_pred             HCEECCCEEECHHHHCCC------------CCCCCCEEEECCCCCC-CCHHHHHHHHHHCC------CCCCCCEEEEEEE
T ss_conf             652634016434875466------------7887657886621014-76999999998377------8899867863114


Q ss_pred             CC
Q ss_conf             32
Q gi|254780802|r  583 VH  584 (869)
Q Consensus       583 ~~  584 (869)
                      .+
T Consensus       132 ~~  133 (142)
T cd00802         132 LG  133 (142)
T ss_pred             EC
T ss_conf             88


No 86 
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=96.86  E-value=0.0039  Score=39.48  Aligned_cols=89  Identities=19%  Similarity=0.295  Sum_probs=61.1

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf             78978987400477977899999977718985567688140205899999980999999999999999999998191766
Q gi|254780802|r   42 FPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQLQSIGLSID  121 (869)
Q Consensus        42 pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~~~~lG~~~D  121 (869)
                      -|-|||.||+|++||-..-=.+||  ...|.=+|+.=-.|.                .-.+..+.+.+.+.++-+|+  +
T Consensus         8 APSPtG~lH~G~~rtal~n~l~a~--~~~g~f~lRieDtD~----------------~R~~~~~~~~i~~~l~wlgi--~   67 (467)
T PRK01406          8 APSPTGYLHVGGARTALFNWLFAR--HHGGKFILRIEDTDL----------------ERSTPEAVDAILDGLKWLGL--D   67 (467)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHH--HHCCEEEEEECCCCC----------------CCCCHHHHHHHHHHHHHCCC--C
T ss_conf             899998422478999999999999--729969999687998----------------87877999999999998799--9


Q ss_pred             CCC-CEECCCHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf             469-8214773599999999999998896341
Q gi|254780802|r  122 WSK-DFATCDVDYYHCQQLLFLDFMKHNVIVR  152 (869)
Q Consensus       122 W~r-~y~T~d~~y~~~v~w~f~~L~~kGliyr  152 (869)
                      |+- +|.-.+.-  ..=+-...+|.++|++|+
T Consensus        68 ~de~p~~QS~r~--~~y~~~~~~L~~~g~aY~   97 (467)
T PRK01406         68 WDEGPYRQSERF--DRYKEVAEQLLEKGKAYY   97 (467)
T ss_pred             CCCCCEEHHCCH--HHHHHHHHHHHHCCCCEE
T ss_conf             998886174489--999999999998499864


No 87 
>cd00808 GluRS_core Descriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The descriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer, that attaches Glu to the appropriate tRNA.  Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=96.77  E-value=0.0011  Score=43.26  Aligned_cols=63  Identities=19%  Similarity=0.301  Sum_probs=45.9

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEE
Q ss_conf             77897898740047797789999997771898556768814020589999998099999999999999999999819176
Q gi|254780802|r   41 MFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQLQSIGLSI  120 (869)
Q Consensus        41 ~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~~~~lG~~~  120 (869)
                      =+|-|||.||+||+++-.+--.+||-  ..|.-+|+.==.                ++..-..++++.++++++-||+..
T Consensus         6 FAPsPtG~LHiG~~rtal~n~l~Ar~--~~G~f~LRieDt----------------D~~R~~~e~~~~I~~dL~wLGl~w   67 (239)
T cd00808           6 FAPSPTGYLHIGGARTALFNYLFAKK--HGGKFILRIEDT----------------DQERSVEEAEEAILEDLKWLGIDW   67 (239)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHH--HCCEEEEEECCC----------------CCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf             08898985338999999999999998--199899984568----------------988787699999999999818887


Q ss_pred             E
Q ss_conf             6
Q gi|254780802|r  121 D  121 (869)
Q Consensus       121 D  121 (869)
                      |
T Consensus        68 D   68 (239)
T cd00808          68 D   68 (239)
T ss_pred             C
T ss_conf             7


No 88 
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=96.77  E-value=0.0064  Score=37.95  Aligned_cols=89  Identities=21%  Similarity=0.335  Sum_probs=68.1

Q ss_pred             CCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC--------HHHHHHHHHH-----------
Q ss_conf             838998077897898740047797789999997771898556768814020--------5899999980-----------
Q gi|254780802|r   34 KKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFG--------MPAENAAREH-----------   94 (869)
Q Consensus        34 ~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~G--------lPie~~~~e~-----------   94 (869)
                      +++.|-. =-.|||.+|||.++--...|+++|-.|-+|+.|.+..=||-.-        +|-....+++           
T Consensus        19 ~~~~v~t-GisPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP   97 (521)
T COG1384          19 DEYVVAT-GISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDP   97 (521)
T ss_pred             CCEEEEC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCC
T ss_conf             8689834-768988732142898989999999999748865799981487510127999998689998709964348997


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHCCCEEECC
Q ss_conf             99999999999999999999819176646
Q gi|254780802|r   95 NVHPKMWTYQNIKVMRKQLQSIGLSIDWS  123 (869)
Q Consensus        95 ~~~~~~~~~~~i~~~k~~~~~lG~~~DW~  123 (869)
                      .-.|..|++.+...+.+.+.++|+-..+-
T Consensus        98 ~G~~~Sya~hf~~~f~~~l~~~Gi~~E~~  126 (521)
T COG1384          98 FGCCDSYAEHFLRPFEEFLDEFGIEVEFV  126 (521)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             66533599999999999998649864998


No 89 
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=96.68  E-value=0.0063  Score=38.00  Aligned_cols=29  Identities=24%  Similarity=0.155  Sum_probs=20.5

Q ss_pred             CCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             4742100000012222100123463356665530
Q gi|254780802|r  626 GPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLS  659 (869)
Q Consensus       626 ~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~~~~  659 (869)
                      .+|+|||||.||+|++.+     ..+.+|=-++.
T Consensus       198 lDGrKMSKSy~NtI~Lf~-----~~k~l~K~I~~  226 (436)
T PRK12284        198 LDGRKMSKSYDNTIPLFS-----PREELKKAIFR  226 (436)
T ss_pred             CCCCCCCCCCCCCCCCCC-----CHHHHHHHHHC
T ss_conf             998705578898064878-----96999998505


No 90 
>TIGR00440 glnS glutaminyl-tRNA synthetase; InterPro: IPR004514   The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases .   Glutaminyl-tRNA synthetase (6.1.1.18 from EC) is a class Ic synthetase and shows several similarities with glutamyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. Glutaminyl-tRNA synthetase is a relatively rare synthetase, found in the cytosolic compartment of eukaryotes, in Escherichia coli and a number of other Gram-negative bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln.; GO: 0000166 nucleotide binding, 0004819 glutamine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006425 glutaminyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=96.47  E-value=0.0033  Score=39.90  Aligned_cols=106  Identities=18%  Similarity=0.336  Sum_probs=64.3

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEE
Q ss_conf             77897898740047797789999997771898556768814020589999998099999999999999999999819176
Q gi|254780802|r   41 MFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQLQSIGLSI  120 (869)
Q Consensus        41 ~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~~~~lG~~~  120 (869)
                      =||=|||-|||||+-+..+-==+|+++  +|..-|   =||-             ..|..-+-++++.+|++..=||+-.
T Consensus         5 FPPEPNGYLHIGHaK~I~~NFG~Ak~y--~G~C~L---RFDD-------------TNP~KE~~EY~eSIK~~V~WLGFkw   66 (564)
T TIGR00440         5 FPPEPNGYLHIGHAKSICLNFGLAKEY--KGTCNL---RFDD-------------TNPVKEDVEYVESIKRDVEWLGFKW   66 (564)
T ss_pred             CCCCCCCCEEHHHHHHHHHHCCCCCCC--CCCEEE---ECCC-------------CCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf             885578730010243134420320201--763644---2167-------------8886466017888752222225124


Q ss_pred             ECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCHHHHHCCCCCC
Q ss_conf             64698214773599999999999998896341221332147767677898984385334
Q gi|254780802|r  121 DWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQVINGRGWR  179 (869)
Q Consensus       121 DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~pV~wcp~~~t~la~~Ev~~g~~~~  179 (869)
                      .|.-.|..   +|....-..=..|-++|+.|     |--|       +-.|+..++|..
T Consensus        67 ~g~~~YsS---DYFD~Ly~~A~~LI~~G~AY-----V~~~-------t~e~i~~~RG~~  110 (564)
T TIGR00440        67 EGKIRYSS---DYFDELYRYAVELIKKGLAY-----VDEL-------TPEEIREYRGTL  110 (564)
T ss_pred             CCCEEECH---HHHHHHHHHHHHHHHCCCEE-----EECC-------CHHHHHHCCCCC
T ss_conf             77313330---46889999999998679606-----7537-------878986327602


No 91 
>cd02156 nt_trans nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=96.39  E-value=0.0013  Score=42.79  Aligned_cols=73  Identities=25%  Similarity=0.405  Sum_probs=60.2

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEE
Q ss_conf             77897898740047797789999997771898556768814020589999998099999999999999999999819176
Q gi|254780802|r   41 MFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQLQSIGLSI  120 (869)
Q Consensus        41 ~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~~~~lG~~~  120 (869)
                      ..|+++|++|+||.+.....+.++|      +++.+...+++++.|......    .+.....+.++.++..++.+|+..
T Consensus         2 ~~~g~fd~~H~GH~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~r~~~~~~~~~~~~~~~   71 (147)
T cd02156           2 LAPGPFDPLHLGHLRLIERADELAR------YGGDELIVIDDTDPPIKKLKG----KPLESLEERLEMLREALKDLGVVL   71 (147)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHH------HCCCCEEEEECCCCCHHHCCC----CCCCCHHHHHHHHHHHCCCEEEEE
T ss_conf             8986048767899999999999999------769928999789991453378----767689999999998288814998


Q ss_pred             ECC
Q ss_conf             646
Q gi|254780802|r  121 DWS  123 (869)
Q Consensus       121 DW~  123 (869)
                      ||.
T Consensus        72 ~~~   74 (147)
T cd02156          72 DFD   74 (147)
T ss_pred             ECC
T ss_conf             577


No 92 
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=96.35  E-value=0.079  Score=30.49  Aligned_cols=27  Identities=33%  Similarity=0.241  Sum_probs=18.5

Q ss_pred             CCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             47421000000122221001234633566655
Q gi|254780802|r  626 GPLEKMSKSKKNVIDPMKVIKSYGADTARLFV  657 (869)
Q Consensus       626 ~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~~  657 (869)
                      .+|+|||||.+|.|.+.+-     .|.+|--+
T Consensus       197 ldgkKMSKS~~n~I~L~D~-----~d~I~kKI  223 (328)
T PRK12556        197 LDGRKMSKSYGNVIPLFAE-----QEKLRKLI  223 (328)
T ss_pred             CCCCCCCCCCCCCCCCCCC-----HHHHHHHH
T ss_conf             9987655687881347689-----99999999


No 93 
>TIGR00392 ileS isoleucyl-tRNA synthetase; InterPro: IPR002301   The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases .    Isoleucyl-tRNA synthetase (6.1.1.5 from EC) is an alpha monomer that belongs to class Ia. The enzyme, isoleucyl-transfer RNA synthetase, activates not only the cognate substrate L-isoleucine but also the minimally distinct L-valine in the first, aminoacylation step. Then, in a second, "editing" step, the synthetase itself rapidly hydrolyzes only the valylated products ,  as shown from the crystal structures. ; GO: 0000166 nucleotide binding, 0004822 isoleucine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006428 isoleucyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=96.34  E-value=0.0055  Score=38.42  Aligned_cols=53  Identities=11%  Similarity=0.166  Sum_probs=36.4

Q ss_pred             HHHHHHHCCCEEECCC-CEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEE---CCC
Q ss_conf             9999998191766469-8214773599999999999998896341221332---147
Q gi|254780802|r  109 MRKQLQSIGLSIDWSK-DFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVN---WDP  161 (869)
Q Consensus       109 ~k~~~~~lG~~~DW~r-~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~pV~---wcp  161 (869)
                      .+++.+.=+--+=.+- ||.|-.+.+=.+.-.+++.+.-+=-..+|+++.+   |++
T Consensus        28 ~~~~~~~~~~F~lhDGPPYAnG~iHlGHalNKilKDii~Ryk~m~G~~v~~~pGWDt   84 (938)
T TIGR00392        28 VKKRNKDKPEFVLHDGPPYANGAIHLGHALNKILKDIILRYKTMQGYNVTYKPGWDT   84 (938)
T ss_pred             HHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCC
T ss_conf             998508998358744858767997402556667611232101122500320478665


No 94 
>PRK00574 gltX glutamyl-tRNA synthetase; Reviewed
Probab=96.34  E-value=0.014  Score=35.63  Aligned_cols=90  Identities=16%  Similarity=0.194  Sum_probs=63.0

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf             78978987400477977899999977718985567688140205899999980999999999999999999998191766
Q gi|254780802|r   42 FPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQLQSIGLSID  121 (869)
Q Consensus        42 pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~~~~lG~~~D  121 (869)
                      -|-|||.||+|.+||-..-=.+||=+  .|.=+|+.=-.|.                .-.+.++++.+.+.|+-+|+-.|
T Consensus        10 APSPTG~lHiG~~rtAl~n~l~Ar~~--~G~fiLRIEDTD~----------------~R~~~~~~~~I~~~L~wlgl~~D   71 (489)
T PRK00574         10 APSPTGYLHIGNARTALFNYLFAKHN--NGKFILRIEDTDQ----------------ERNVEGGEESQLENLKWLGIDWD   71 (489)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEECCCCC----------------CCCCHHHHHHHHHHHHHCCCCCC
T ss_conf             98999842247899999999999964--9989998677898----------------77876999999999998798887


Q ss_pred             CC-------CCEECCC--HHHHHHHHHHHHHHHHCCCEEEC
Q ss_conf             46-------9821477--35999999999999988963412
Q gi|254780802|r  122 WS-------KDFATCD--VDYYHCQQLLFLDFMKHNVIVRK  153 (869)
Q Consensus       122 W~-------r~y~T~d--~~y~~~v~w~f~~L~~kGliyrg  153 (869)
                      =.       -||.-..  ..|.+    ...+|.++|..|+-
T Consensus        72 E~p~~~g~~gPY~QS~R~~~Y~~----~a~~Ll~~G~AY~C  108 (489)
T PRK00574         72 EGPDKGGEYGPYRQSERLDIYQK----YADQLLEEGKAYYC  108 (489)
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHH----HHHHHHHCCCCEEC
T ss_conf             78777888888351268999999----99999974997452


No 95 
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Probab=96.08  E-value=0.11  Score=29.59  Aligned_cols=101  Identities=15%  Similarity=0.186  Sum_probs=67.3

Q ss_pred             CCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH----HH----HHHHHHHHHHHCCCC--------CCCCHHHHHHHHH
Q ss_conf             2346335666553013321111134321011455----67----788999997630246--------6789756999999
Q gi|254780802|r  646 KSYGADTARLFVLSDSPPDRDIIWSNKGVDSTYQ----FI----QQIWRLIYNAKDELQ--------TSSTKKDISLISK  709 (869)
Q Consensus       646 ~~yGaD~lRl~~~~~~~~~~d~~~s~~~i~~~~r----fl----~kl~~l~~~~~~~~~--------~~~~~~D~~ils~  709 (869)
                      ++=|.|++|+++++ .....++.|+.+.+.....    ++    -|+-+++..+.....        ....+.++.++..
T Consensus         1 e~Ig~~Airy~~L~-~~~~~~~~FD~d~~~~~~gnt~~YiQYa~aR~~SIl~k~~~~~~~~~~~~~~~l~~~~e~~Li~~   79 (156)
T cd07956           1 EEVGVGAVKYQDLS-NKRIKDYTFDWERMLSFEGDTGPYLQYAHARLCSILRKAGETIEAEADADLSLLPEPDERDLILL   79 (156)
T ss_pred             CCCCHHHHHHHHHH-CCCCCCCEECHHHHHCCCCCCCEEHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCHHHHHHHHH
T ss_conf             96423578889986-38999845529998623689851124899999999997245453322254200499899999999


Q ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999881688999999999999999999862
Q gi|254780802|r  710 STKFLERIEENYQNLSFNKAVANIHELVNVISKPLMEI  747 (869)
Q Consensus       710 ~~~~i~~v~~~~e~~~f~~ai~~i~~f~n~ls~~y~~~  747 (869)
                      +.+.-.-+.++.++++-+..+.-++++...|+++|-..
T Consensus        80 l~~fp~vl~~a~~~~~P~~l~~YL~~La~~F~~fY~~~  117 (156)
T cd07956          80 LAKFPEVVKNAAETLEPHTIATYLFDLAHAFSKFYNAC  117 (156)
T ss_pred             HHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf             96572899999997070699999999999999999749


No 96 
>KOG4426 consensus
Probab=95.96  E-value=0.12  Score=29.21  Aligned_cols=46  Identities=15%  Similarity=0.122  Sum_probs=29.9

Q ss_pred             HHHHHH-HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             699999-9999999999998816889999999999999999998621
Q gi|254780802|r  703 DISLIS-KSTKFLERIEENYQNLSFNKAVANIHELVNVISKPLMEIA  748 (869)
Q Consensus       703 D~~ils-~~~~~i~~v~~~~e~~~f~~ai~~i~~f~n~ls~~y~~~~  748 (869)
                      +.|-+. .+-++..-+.++.++.-.+.-+.-+|++...|..+|....
T Consensus       567 ~E~kLg~~lLkf~e~v~~~~~~L~lh~lC~y~y~l~t~Ft~FY~~Cy  613 (656)
T KOG4426         567 KEWKLGKHLLKFAEIVEKALDSLFLHVLCDYLYELATLFTEFYDSCY  613 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCE
T ss_conf             78899999985899999999988799999999999999999851207


No 97 
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=95.88  E-value=0.13  Score=29.00  Aligned_cols=28  Identities=29%  Similarity=0.194  Sum_probs=20.1

Q ss_pred             CCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             742100000012222100123463356665530
Q gi|254780802|r  627 PLEKMSKSKKNVIDPMKVIKSYGADTARLFVLS  659 (869)
Q Consensus       627 ~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~~~~  659 (869)
                      +|+|||||.+|.|.+.+     ..|.+|=-++.
T Consensus       261 DGkKMSKS~~n~I~L~D-----~~~~I~KKI~k  288 (398)
T PRK12283        261 DGQKMSKSYGNTIGLRE-----DPETVTKKIRT  288 (398)
T ss_pred             CCCCCCCCCCCEEECCC-----CHHHHHHHHHH
T ss_conf             98645799999755528-----99999999974


No 98 
>KOG1147 consensus
Probab=95.82  E-value=0.069  Score=30.89  Aligned_cols=109  Identities=19%  Similarity=0.267  Sum_probs=72.0

Q ss_pred             EEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             99807789789874004779778999999777189855676881402058999999809999999999999999999981
Q gi|254780802|r   37 FVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQLQSI  116 (869)
Q Consensus        37 ~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~~~~l  116 (869)
                      +++-=||=|||-||||||..-.+--.+|  ++-+|+   -.+-||-|             .|..-.++|.+.+.+++.-|
T Consensus       201 Vv~RFPPEpSGyLHIGHAKAALLNqYfa--~~~~G~---LIvRFDDT-------------NPaKE~~eFe~~IleDl~~L  262 (712)
T KOG1147         201 VVTRFPPEPSGYLHIGHAKAALLNQYFA--QAYQGK---LIVRFDDT-------------NPAKENEEFEDVILEDLSLL  262 (712)
T ss_pred             EEEECCCCCCCEEEHHHHHHHHHHHHHH--HHCCCE---EEEEECCC-------------CCCHHHHHHHHHHHHHHHHH
T ss_conf             5785698977602411679999999999--852862---99982699-------------92021678999998778870


Q ss_pred             CCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCHHHHHCC
Q ss_conf             91766469821477359999999999999889634122133214776767789898438
Q gi|254780802|r  117 GLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQVING  175 (869)
Q Consensus       117 G~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~pV~wcp~~~t~la~~Ev~~g  175 (869)
                      |+--|    -.|..-+|..-+.---.+|.+.|..|-...|.        --.-+|+++|
T Consensus       263 gIkpd----~~TyTSDyF~~i~dycv~likeGKAYvDDTp~--------E~Mr~ER~~g  309 (712)
T KOG1147         263 GIKPD----RVTYTSDYFDEIMDYCVKLIKEGKAYVDDTPT--------EQMRDEREQG  309 (712)
T ss_pred             CCCCC----EEEECHHHHHHHHHHHHHHHHCCCCCCCCCCH--------HHHHHHHHCC
T ss_conf             85764----44531355999999999998637431369968--------9999887605


No 99 
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=95.61  E-value=0.16  Score=28.30  Aligned_cols=25  Identities=44%  Similarity=0.355  Sum_probs=17.0

Q ss_pred             CCCHHHCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             210000001222210012346335666553
Q gi|254780802|r  629 EKMSKSKKNVIDPMKVIKSYGADTARLFVL  658 (869)
Q Consensus       629 ~KMSKSkGNvi~p~~~i~~yGaD~lRl~~~  658 (869)
                      .|||||.||.|.+.|     ..|.+|-=+.
T Consensus       195 ~KMSKS~~n~I~L~D-----~~~~I~kKI~  219 (333)
T PRK12282        195 AKMSKSLGNAIYLSD-----SADTIKKKVM  219 (333)
T ss_pred             CCCCCCCCCCEECCC-----CHHHHHHHHH
T ss_conf             010599999621448-----9999999988


No 100
>KOG1148 consensus
Probab=95.50  E-value=0.083  Score=30.35  Aligned_cols=96  Identities=21%  Similarity=0.301  Sum_probs=46.7

Q ss_pred             EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             89980778978987400477977899999977718985567688140205899999980999999999999999999998
Q gi|254780802|r   36 YFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQLQS  115 (869)
Q Consensus        36 f~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~~~~  115 (869)
                      -+.|-=||=|||-||||||-..-+-==+|++  +.|..-|   -||-|             .|..-.+++...+++...=
T Consensus       248 kV~TRFPPEPNG~LHIGHaKAInvNFgyAk~--~~G~cyL---RfDDT-------------NPEkEee~yf~sI~e~V~W  309 (764)
T KOG1148         248 KVVTRFPPEPNGILHIGHAKAINVNFGYAKA--HGGVCYL---RFDDT-------------NPEKEEEEYFESIKEMVAW  309 (764)
T ss_pred             EEEEECCCCCCCEEEECCHHHEEECHHHHHH--HCCEEEE---ECCCC-------------CCCHHHHHHHHHHHHHHHH
T ss_conf             6677179898856563213430101244665--0976899---62789-------------8203368999999999987


Q ss_pred             CCCEEECCCCEECCCHHHHHHHHHHHHHHHHCC--CEEECCEEEECC
Q ss_conf             191766469821477359999999999999889--634122133214
Q gi|254780802|r  116 IGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHN--VIVRKTAQVNWD  160 (869)
Q Consensus       116 lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kG--liyrg~~pV~wc  160 (869)
                      ||+    .---.|..-+|       |.+||+.+  ||.||...|-.|
T Consensus       310 LG~----~P~kvTysSDy-------FdqLy~~av~LIrkG~AYVcHq  345 (764)
T KOG1148         310 LGF----EPYKVTYSSDY-------FDQLYELAVELIRKGKAYVCHQ  345 (764)
T ss_pred             HCC----CCEEEECCHHH-------HHHHHHHHHHHHHCCCEEEEEC
T ss_conf             187----85044124167-------9999999999986686467735


No 101
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.38  E-value=0.016  Score=35.23  Aligned_cols=45  Identities=16%  Similarity=0.320  Sum_probs=35.2

Q ss_pred             HHHCCCCHHHHHHHHHHHHHHH-----------CCCCCCHHHHHHHHHCC-CCCCCC
Q ss_conf             0001356466548889999740-----------46775202221110001-112211
Q gi|254780802|r  392 SFLDGMTNTEALQAVMSHLEKQ-----------NIKNSPIGKRKINFRLR-DWCISR  436 (869)
Q Consensus       392 ~~~~g~~~~~~~~~i~~~l~~~-----------~~~~~~~~~~~~~~~l~-DW~ISR  436 (869)
                      ..+.|+.+.+|-+.|++.|.+.           .++++|+.+..+.||.. .|+||-
T Consensus       366 ~~~~G~~v~dAn~~Ii~~Lk~~g~Ll~~e~i~HsYPhcWR~ktPlIyRAt~QWFi~v  422 (933)
T COG0060         366 PKYEGLFVKDANKKIIEDLKEKGNLLKSEKIEHSYPHCWRTKTPLIYRATPQWFVSV  422 (933)
T ss_pred             HHHCCCEECCCCHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCEEEEEECCHHEEEH
T ss_conf             321782400078999999986795315335775798666789806985052033678


No 102
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=94.48  E-value=0.034  Score=32.98  Aligned_cols=19  Identities=21%  Similarity=0.312  Sum_probs=15.9

Q ss_pred             CCCCCCCEEECCCHHHCCC
Q ss_conf             2358700130620221025
Q gi|254780802|r  589 QLEGIKKKYLKPDEVILRN  607 (869)
Q Consensus       589 ~~~~~~~~~~~p~~~~~~~  607 (869)
                      +||||.||.+.|.+++-..
T Consensus       594 KMSKS~GNvidP~~vi~~y  612 (1042)
T PRK06039        594 KMSKSLGNYVDPFEVFDKY  612 (1042)
T ss_pred             ECCCCCCCCCCHHHHHHHC
T ss_conf             8033678868979998860


No 103
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=93.79  E-value=0.24  Score=27.14  Aligned_cols=17  Identities=35%  Similarity=0.096  Sum_probs=12.8

Q ss_pred             CCCCHHH-CCCCCCCCCC
Q ss_conf             4210000-0012222100
Q gi|254780802|r  628 LEKMSKS-KKNVIDPMKV  644 (869)
Q Consensus       628 g~KMSKS-kGNvi~p~~~  644 (869)
                      ..||||| .+|.|.+.|-
T Consensus       218 ~~KMSkS~~~~~I~l~D~  235 (333)
T PRK08560        218 EIKMSKSKPGSAIFVHDS  235 (333)
T ss_pred             CCCCCCCCCCCCEEECCC
T ss_conf             886788999994741589


No 104
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=93.43  E-value=0.034  Score=32.96  Aligned_cols=19  Identities=42%  Similarity=0.076  Sum_probs=15.9

Q ss_pred             ECCC-CCCHHHCCCCCCCCC
Q ss_conf             0474-210000001222210
Q gi|254780802|r  625 IGPL-EKMSKSKKNVIDPMK  643 (869)
Q Consensus       625 ~~~g-~KMSKSkGNvi~p~~  643 (869)
                      ..+| +|||||.||.|++++
T Consensus       224 ~~dG~~KmgKS~gnaIwLd~  243 (405)
T PRK13354        224 GLDGTEKMSKSLGNYIGLDE  243 (405)
T ss_pred             CCCCCCCCCCCCCCCEECCC
T ss_conf             88775532501278631479


No 105
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=93.40  E-value=0.53  Score=24.81  Aligned_cols=27  Identities=33%  Similarity=0.379  Sum_probs=18.1

Q ss_pred             CCCCCHHHCCC---CCCCCCCCCCCCHHHHHHHHH
Q ss_conf             74210000001---222210012346335666553
Q gi|254780802|r  627 PLEKMSKSKKN---VIDPMKVIKSYGADTARLFVL  658 (869)
Q Consensus       627 ~g~KMSKSkGN---vi~p~~~i~~yGaD~lRl~~~  658 (869)
                      +++|||||.+|   .|.+.+     ..|.+|--+.
T Consensus       189 ~~~KMSKS~~n~~s~I~l~d-----~~~~i~kKi~  218 (325)
T PRK00927        189 PTKKMSKSDGNDNSTINLLD-----DPKTIAKKIK  218 (325)
T ss_pred             CCCCCCCCCCCCCCEEECCC-----CHHHHHHHHH
T ss_conf             55101446799765565138-----9999999988


No 106
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=92.86  E-value=0.42  Score=25.54  Aligned_cols=78  Identities=18%  Similarity=0.232  Sum_probs=41.8

Q ss_pred             CCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH---HHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             88389980778978987400477977899999977718985567688140205---899999980999999999999999
Q gi|254780802|r   33 KKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGM---PAENAAREHNVHPKMWTYQNIKVM  109 (869)
Q Consensus        33 ~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~Gl---Pie~~~~e~~~~~~~~~~~~i~~~  109 (869)
                      .++.-+..|+=-+..+||+||+....    ..|.....|++|.+..| +.||+   |-- ...+...-..+-+.++.+.+
T Consensus        35 ~~~l~vy~GfDPTa~sLHlGhlv~l~----~L~~fq~~Gh~~i~liG-g~T~~IGDPSg-k~~~R~~l~~e~i~~N~~~~  108 (405)
T PRK13354         35 GKPLTLKLGLDPTAPDIHIGHLVVLR----KLKQFQDAGHRAVILIG-DFTGKIGDPTG-KSKERKLLTDEQVQHNADTY  108 (405)
T ss_pred             CCCEEEEEEECCCCCCCHHHHHHHHH----HHHHHHHCCCCEEEEEC-CCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHH
T ss_conf             88438999546998852076499999----99999986994799967-86542569999-85456676799999999999


Q ss_pred             HHHHHHC
Q ss_conf             9999981
Q gi|254780802|r  110 RKQLQSI  116 (869)
Q Consensus       110 k~~~~~l  116 (869)
                      ++|+.++
T Consensus       109 ~~q~~~~  115 (405)
T PRK13354        109 TEQIFKL  115 (405)
T ss_pred             HHHHHHH
T ss_conf             9999986


No 107
>KOG1195 consensus
Probab=92.82  E-value=0.64  Score=24.25  Aligned_cols=109  Identities=17%  Similarity=0.147  Sum_probs=66.1

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHH----HHHHH----HHHHHHHHHHCCCCCCC--------CHH
Q ss_conf             222100123463356665530133211111343210114----55677----88999997630246678--------975
Q gi|254780802|r  639 IDPMKVIKSYGADTARLFVLSDSPPDRDIIWSNKGVDST----YQFIQ----QIWRLIYNAKDELQTSS--------TKK  702 (869)
Q Consensus       639 i~p~~~i~~yGaD~lRl~~~~~~~~~~d~~~s~~~i~~~----~rfl~----kl~~l~~~~~~~~~~~~--------~~~  702 (869)
                      -.|+++.+.-|+-|+.+-. +.+....+..|+++++-..    .-+|+    |+-.+.....+...+..        ..+
T Consensus       404 ~~~~~vad~lg~sAviv~d-~k~rr~s~yeF~w~~~~~~~gdtg~yLQY~HsRL~Slerk~~~~~~~~l~~~d~~~l~ep  482 (567)
T KOG1195         404 ANPDEVADRLGLSAVIVQD-FKGRRISNYEFSWNRVLSFEGDTGPYLQYTHSRLRSLERKFSDVTLDDLDEIDFSLLTEP  482 (567)
T ss_pred             CCHHHHHHHHHHHHHHHHH-HHHHHCCCCEEEHHHHHEECCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHCCCH
T ss_conf             8878999887457787999-888750563677003002168844788887878999998625667044410216651773


Q ss_pred             H-HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             6-999999999999999998816889999999999999999998621
Q gi|254780802|r  703 D-ISLISKSTKFLERIEENYQNLSFNKAVANIHELVNVISKPLMEIA  748 (869)
Q Consensus       703 D-~~ils~~~~~i~~v~~~~e~~~f~~ai~~i~~f~n~ls~~y~~~~  748 (869)
                      + ..++..+.++-+-+..++|.++-...+.-+..+++..|..|..+.
T Consensus       483 ~~~~Lv~~L~~fp~vve~s~e~lE~~~lV~YL~~La~a~s~~yk~l~  529 (567)
T KOG1195         483 DALLLVRLLLQFPEVVEKSMEQLEPCTLVTYLFKLAHAVSSAYKILW  529 (567)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEE
T ss_conf             69999999850089999999762434379999999999986776101


No 108
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=92.75  E-value=0.063  Score=31.16  Aligned_cols=46  Identities=28%  Similarity=0.264  Sum_probs=19.4

Q ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCC
Q ss_conf             110001112211232222234223334684634742000111001000224542
Q gi|254780802|r  425 INFRLRDWCISRQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNP  478 (869)
Q Consensus       425 ~~~~l~DW~ISRqr~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~  478 (869)
                      +...|.+..+....|+....|+ +| +||...      .+.++.|+||..++++
T Consensus       355 i~~~L~~~g~~~~~y~~~~~~v-~~-R~g~~~------v~~~~~dQWFi~~~~~  400 (888)
T PRK12300        355 ITEDLIESGIAEIMYEFSEKPV-YC-RCGTEC------VVKVVKDQWFIDYSNP  400 (888)
T ss_pred             HHHHHHHCCCCCEEECCCCCCC-CC-CCCCEE------EEECCCCCCCCCCCCH
T ss_conf             9999997799740303577886-78-999867------6341687641047876


No 109
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=92.61  E-value=0.11  Score=29.56  Aligned_cols=18  Identities=17%  Similarity=0.447  Sum_probs=13.9

Q ss_pred             CCCCCCCEEECCCHHHCC
Q ss_conf             235870013062022102
Q gi|254780802|r  589 QLEGIKKKYLKPDEVILR  606 (869)
Q Consensus       589 ~~~~~~~~~~~p~~~~~~  606 (869)
                      +||||.||.+.|.+++-.
T Consensus       538 KMSKS~GNvi~p~eii~~  555 (809)
T PRK13208        538 KMSKSKGNVVDPEELLEK  555 (809)
T ss_pred             CCCCCCCCCCCHHHHHHH
T ss_conf             347778896897898653


No 110
>cd00805 TyrRS_core Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer, which attaches Tyr to the appropriate tRNA.  TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=92.48  E-value=0.056  Score=31.54  Aligned_cols=15  Identities=47%  Similarity=0.171  Sum_probs=12.2

Q ss_pred             CCCCCCHHHCCCCCC
Q ss_conf             474210000001222
Q gi|254780802|r  626 GPLEKMSKSKKNVID  640 (869)
Q Consensus       626 ~~g~KMSKSkGNvi~  640 (869)
                      .+|+|||||.||.+.
T Consensus       190 ~dG~KMSKS~~N~i~  204 (268)
T cd00805         190 LDGGKMSKSEGNAIW  204 (268)
T ss_pred             CCCCCCCCCCCCCCC
T ss_conf             998744678999501


No 111
>cd00805 TyrRS_core Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer, which attaches Tyr to the appropriate tRNA.  TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=92.31  E-value=0.42  Score=25.50  Aligned_cols=76  Identities=25%  Similarity=0.360  Sum_probs=40.8

Q ss_pred             CCC-CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCC-CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf             789-8740047797789999997771898556768-8140-205899999980999999999999999999998191766
Q gi|254780802|r   45 PSG-NIHMGHLRNYVIGDVVARFMRASGYSVLHPM-GWDA-FGMPAENAAREHNVHPKMWTYQNIKVMRKQLQSIGLSID  121 (869)
Q Consensus        45 ~nG-~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~-G~d~-~GlPie~~~~e~~~~~~~~~~~~i~~~k~~~~~lG~~~D  121 (869)
                      ||| .||+||.+... +  ..+.+ ..|+++.+-. +||. .|-|-... .+......+....+.+.+..++..+|.+.|
T Consensus         9 PTG~~lHLGhyv~~~-~--~~~~q-~~g~~~~~~IaD~hAli~dp~~~~-~~r~~~~~e~i~~~~~~~~~~~~~~~~~~~   83 (268)
T cd00805           9 PTAPSLHLGHLVPLM-K--LRDFQ-QAGHEVIVLIGDATAMIGDPSGKS-EERKLLTEEEILENAKYIKKQIKAILKFIP   83 (268)
T ss_pred             CCCCCCCHHHHHHHH-H--HHHHH-HCCCCEEEEEECCEEECCCCCCCC-HHHCCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             999972499999999-9--99998-789958999954201405897650-222146199999988738999988525899


Q ss_pred             CCCC
Q ss_conf             4698
Q gi|254780802|r  122 WSKD  125 (869)
Q Consensus       122 W~r~  125 (869)
                      =.+.
T Consensus        84 ~~~~   87 (268)
T cd00805          84 PEKL   87 (268)
T ss_pred             CCCE
T ss_conf             8746


No 112
>KOG0434 consensus
Probab=91.32  E-value=0.15  Score=28.62  Aligned_cols=102  Identities=24%  Similarity=0.419  Sum_probs=69.7

Q ss_pred             CCCCEECCCHHH------HHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCHHHH-----------------------
Q ss_conf             469821477359------999999999999889634122133214776767789898-----------------------
Q gi|254780802|r  122 WSKDFATCDVDY------YHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQV-----------------------  172 (869)
Q Consensus       122 W~r~y~T~d~~y------~~~v~w~f~~L~~kGliyrg~~pV~wcp~~~t~la~~Ev-----------------------  172 (869)
                      -...|.|.|..-      -.|-.--|.-+..+|.|-++..|+  ||.+.+.+=-.||                       
T Consensus       309 l~d~yVt~~sGTGiVH~AP~FGe~Dy~~c~~~giI~~d~~~~--cpVDe~G~~Tsev~dfaG~YVKDaDK~Ii~~lk~~g  386 (1070)
T KOG0434         309 LSDDYVTEDSGTGIVHQAPAFGEEDYRACVANGIIRKDSLPP--CPVDESGLFTSEVTDFAGQYVKDADKLIIRSLKASG  386 (1070)
T ss_pred             ECCCCEECCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHCC
T ss_conf             615727427886136507765705489999739513778788--861667763100542255242214399999998527


Q ss_pred             ----------HCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC-CCCCC
Q ss_conf             ----------438533456432233475233430344454432100225543222221-00014
Q gi|254780802|r  173 ----------INGRGWRSDAPVEQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIM-QKNWI  225 (869)
Q Consensus       173 ----------~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~l~~~p~~v~~~-~~~~i  225 (869)
                                .++.|||++.|...+..|.||.+.+..-+.++.-....-.-|..++.- -.||+
T Consensus       387 ~lv~~~~i~HsYPFCWRSDTPLiYraVPsWFVrVk~~v~~ll~nn~~t~WVP~~ikeKRF~NWL  450 (1070)
T KOG0434         387 RLVKASQITHSYPFCWRSDTPLIYRAVPSWFVRVKNIVDQLLRNNMKTHWVPQNIKEKRFANWL  450 (1070)
T ss_pred             CEEEEEEEEECCCCEECCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf             4665565664467335589707876342765119977999985155443477055677888887


No 113
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=91.03  E-value=0.27  Score=26.79  Aligned_cols=18  Identities=17%  Similarity=0.342  Sum_probs=11.4

Q ss_pred             CCCCCCCEEECCCHHHCC
Q ss_conf             235870013062022102
Q gi|254780802|r  589 QLEGIKKKYLKPDEVILR  606 (869)
Q Consensus       589 ~~~~~~~~~~~p~~~~~~  606 (869)
                      +||||.||.+.|.+++..
T Consensus       636 KMSKS~GNvvdP~~ii~~  653 (966)
T PRK13804        636 KMSKSLGNVVDPQDVIKQ  653 (966)
T ss_pred             CCCCCCCCCCCHHHHHHH
T ss_conf             887878898998999987


No 114
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=91.00  E-value=0.1  Score=29.67  Aligned_cols=17  Identities=41%  Similarity=0.266  Sum_probs=13.1

Q ss_pred             CC-CCCHHHCCC-CCCCCC
Q ss_conf             74-210000001-222210
Q gi|254780802|r  627 PL-EKMSKSKKN-VIDPMK  643 (869)
Q Consensus       627 ~g-~KMSKSkGN-vi~p~~  643 (869)
                      .| .|||||.+| +|.+.|
T Consensus       194 ~g~~KMSkS~~ns~I~L~D  212 (314)
T COG0180         194 DGPGKMSKSDPNSAIFLLD  212 (314)
T ss_pred             CCCCCCCCCCCCCEEECCC
T ss_conf             9998666669998245049


No 115
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=90.57  E-value=0.42  Score=25.52  Aligned_cols=17  Identities=41%  Similarity=0.108  Sum_probs=13.9

Q ss_pred             CC-CCCHHHCCCCCCCCC
Q ss_conf             74-210000001222210
Q gi|254780802|r  627 PL-EKMSKSKKNVIDPMK  643 (869)
Q Consensus       627 ~g-~KMSKSkGNvi~p~~  643 (869)
                      +| +|||||.||.|++++
T Consensus       222 dG~K~gsKS~gnaIwLd~  239 (402)
T PRK05912        222 DGVKKMSKSLGNYIWLDE  239 (402)
T ss_pred             CCCCCCCCCCCCCEECCC
T ss_conf             768435667998701789


No 116
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=90.56  E-value=0.36  Score=25.95  Aligned_cols=17  Identities=18%  Similarity=0.292  Sum_probs=11.3

Q ss_pred             CCCCCCCEEECCCHHHC
Q ss_conf             23587001306202210
Q gi|254780802|r  589 QLEGIKKKYLKPDEVIL  605 (869)
Q Consensus       589 ~~~~~~~~~~~p~~~~~  605 (869)
                      +||+|.||.+.|.+++-
T Consensus       522 KMSKS~GNvidP~~vi~  538 (877)
T PRK05729        522 KMSKSKGNVIDPLDLID  538 (877)
T ss_pred             CCCCCCCCCCCHHHHHH
T ss_conf             78787889899899998


No 117
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=89.88  E-value=1.3  Score=22.24  Aligned_cols=15  Identities=40%  Similarity=0.211  Sum_probs=10.5

Q ss_pred             CCCCCHHHCCC-CCCC
Q ss_conf             74210000001-2222
Q gi|254780802|r  627 PLEKMSKSKKN-VIDP  641 (869)
Q Consensus       627 ~g~KMSKSkGN-vi~p  641 (869)
                      .|.|||.|.+| .|.+
T Consensus       250 ~G~KMSsS~p~saI~l  265 (369)
T PRK12285        250 TGGKMSSSKPESAIYL  265 (369)
T ss_pred             CCCCCCCCCCCCEEEE
T ss_conf             8898768999853685


No 118
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=89.19  E-value=0.2  Score=27.68  Aligned_cols=104  Identities=22%  Similarity=0.288  Sum_probs=51.3

Q ss_pred             CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCC-CCHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             888389980778978987400477977899999977718985567688-140-205899999980999999999999999
Q gi|254780802|r   32 NKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMG-WDA-FGMPAENAAREHNVHPKMWTYQNIKVM  109 (869)
Q Consensus        32 ~~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G-~d~-~GlPie~~~~e~~~~~~~~~~~~i~~~  109 (869)
                      .++++.+..|.= |||.||+||..+. ++  +.++|.+ |++|.|..| ||. .+.|         .++. -..+....+
T Consensus        27 ~~~~~rv~~G~~-PTG~lHLGh~v~~-~k--~~~lQd~-g~~~~~~IaD~hA~i~~~---------~~~~-~~r~~~~~~   91 (333)
T PRK08560         27 SGEEPKAYIGFE-PSGFIHLGHLVTM-NK--LADLQKA-GFKVTVLLADWHAWLNDK---------GDLE-EIRKVAEYN   91 (333)
T ss_pred             CCCCCEEEECCC-CCCCCHHHHHHHH-HH--HHHHHHC-CCCEEEEECCCEEECCCC---------CCHH-HHHHHHHHH
T ss_conf             699988996617-8984538999999-99--9999977-991899961322333899---------9999-999999999


Q ss_pred             HHHHHHCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCE
Q ss_conf             99999819176646982147735999999999999988963
Q gi|254780802|r  110 RKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVI  150 (869)
Q Consensus       110 k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGli  150 (869)
                      ..++..+|+--|=..-|.-.+.....--+|.+..|-.++-+
T Consensus        92 ~~~~~A~GlDp~k~~i~~qS~~~~~~e~~~~~~~l~~~~tl  132 (333)
T PRK08560         92 KKVFEALGLDPDKTEFVLGSEFQLDPEYWLLVLKLAKNTTL  132 (333)
T ss_pred             HHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCH
T ss_conf             99999707896423999898624675699999998064739


No 119
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=88.96  E-value=0.45  Score=25.33  Aligned_cols=15  Identities=27%  Similarity=0.421  Sum_probs=6.8

Q ss_pred             CCCCCCEEECCCHHH
Q ss_conf             358700130620221
Q gi|254780802|r  590 LEGIKKKYLKPDEVI  604 (869)
Q Consensus       590 ~~~~~~~~~~p~~~~  604 (869)
                      ||||.||.+.|.+++
T Consensus       526 MSKS~GNvIDP~d~I  540 (877)
T COG0525         526 MSKSKGNVIDPLDVI  540 (877)
T ss_pred             CCCCCCCCCCHHHHH
T ss_conf             755578858979999


No 120
>TIGR00422 valS valyl-tRNA synthetase; InterPro: IPR002303   The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases .   Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=88.09  E-value=0.43  Score=25.42  Aligned_cols=65  Identities=11%  Similarity=0.148  Sum_probs=35.1

Q ss_pred             CCCCCCCCCCCCCCCCCC--------CCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCHHHHHCCH
Q ss_conf             543222221000145576--------7545355567777775136532001344432320033024432034541314
Q gi|254780802|r  212 EWPEKVKIMQKNWIGRSE--------GMEIRWEIVSNTIDQIEEILVYTTRPETIFGASFIAIAVDHSISEKLSCDNT  281 (869)
Q Consensus       212 ~~p~~v~~~~~~~i~~~~--------~~~~~~~~~~~~~~~~~~l~~~TtrPeTl~g~~~i~v~~~~~~~~~~~~~~~  281 (869)
                      ..||++.+-++..+++.+        |-.|..|++....     -+|+.-.=+.=||-.+|-|.|-|+...+..+.+-
T Consensus       232 TRPETm~gDtAvaVhP~DeRYYk~L~GK~v~~PL~~r~i-----piiaDe~VD~EFGTG~VKvTPAHD~ND~~~g~RH  304 (970)
T TIGR00422       232 TRPETMFGDTAVAVHPEDERYYKHLIGKKVILPLTGRKI-----PIIADEYVDMEFGTGAVKVTPAHDFNDYEVGKRH  304 (970)
T ss_pred             CCCHHHHHCEEEEECCCCCHHHHHHCCCEEEECCCCCEE-----EEECCCCCCCCCCCCEEEEECCCCCCCHHHCCEE
T ss_conf             672256428288767897045785549889724567684-----3761775462417512776087497760013412


No 121
>pfam00579 tRNA-synt_1b tRNA synthetases class I (W and Y).
Probab=87.53  E-value=0.59  Score=24.49  Aligned_cols=18  Identities=39%  Similarity=0.121  Sum_probs=13.2

Q ss_pred             CC-CCCHHHCCC-CCCCCCC
Q ss_conf             74-210000001-2222100
Q gi|254780802|r  627 PL-EKMSKSKKN-VIDPMKV  644 (869)
Q Consensus       627 ~g-~KMSKSkGN-vi~p~~~  644 (869)
                      +| +|||||.+| .|.+.+-
T Consensus       193 ~G~~KMSKS~~nsaI~L~d~  212 (291)
T pfam00579       193 DGGKKMSKSAGNSAIFLDDE  212 (291)
T ss_pred             CCCCCCCCCCCCCEEECCCC
T ss_conf             78766367899972666798


No 122
>cd00806 TrpRS_core Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer, which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=87.18  E-value=1.9  Score=21.06  Aligned_cols=20  Identities=25%  Similarity=0.155  Sum_probs=12.6

Q ss_pred             CHHHHCCCCCCCCCCCHHHHH
Q ss_conf             334401455544332023455
Q gi|254780802|r  536 PVDQYIGGIEHAVLHLLYARF  556 (869)
Q Consensus       536 P~D~~i~g~d~~~~~~~~~r~  556 (869)
                      -+|+...|.||. -|+-.+|-
T Consensus       138 ~~d~vp~G~DQ~-~h~~laRd  157 (282)
T cd00806         138 QADLVPVGEDQD-PHLELTRD  157 (282)
T ss_pred             CCCCCCCCHHHH-HHHHHHHH
T ss_conf             565052220479-99999999


No 123
>cd00395 Tyr_Trp_RS_core Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=86.77  E-value=1.1  Score=22.77  Aligned_cols=26  Identities=27%  Similarity=0.285  Sum_probs=16.1

Q ss_pred             CCCHHHCCCCCC-CCCCCCCCCHHHHHHHHHH
Q ss_conf             210000001222-2100123463356665530
Q gi|254780802|r  629 EKMSKSKKNVID-PMKVIKSYGADTARLFVLS  659 (869)
Q Consensus       629 ~KMSKSkGNvi~-p~~~i~~yGaD~lRl~~~~  659 (869)
                      +|||||.||.+- +.+     .++.++=.++.
T Consensus       186 ~KMSKS~~ns~i~l~D-----sp~~i~~KI~~  212 (274)
T cd00395         186 KKMSKSDGNAIIFLLD-----SPEEIYKKIMK  212 (274)
T ss_pred             CCCCCCCCCCEEECCC-----CHHHHHHHHEE
T ss_conf             6745789984465469-----99999998722


No 124
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=86.48  E-value=0.74  Score=23.83  Aligned_cols=14  Identities=29%  Similarity=0.209  Sum_probs=11.1

Q ss_pred             CCCCCCHHHCCCCC
Q ss_conf             47421000000122
Q gi|254780802|r  626 GPLEKMSKSKKNVI  639 (869)
Q Consensus       626 ~~g~KMSKSkGNvi  639 (869)
                      .+|.|||||.||.+
T Consensus       220 ldG~KmgKs~~~a~  233 (401)
T COG0162         220 LDGKKMGKSEGGAV  233 (401)
T ss_pred             CCCCCCCCCCCCCE
T ss_conf             98881566677867


No 125
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=86.44  E-value=1.5  Score=21.75  Aligned_cols=21  Identities=14%  Similarity=0.252  Sum_probs=14.6

Q ss_pred             HCCCHHHHCCCCCCCCCCCHH
Q ss_conf             114334401455544332023
Q gi|254780802|r  533 QWFPVDQYIGGIEHAVLHLLY  553 (869)
Q Consensus       533 ~~~P~D~~i~g~d~~~~~~~~  553 (869)
                      ..+-+|.-.+|.||--+|++-
T Consensus       223 ~~L~vDi~~gGmDQRKi~mLA  243 (399)
T PTZ00126        223 FFLGADICQLGMDQRKVNMLA  243 (399)
T ss_pred             HHCCCCEEECCHHHHHHHHHH
T ss_conf             305676443360199999999


No 126
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=85.32  E-value=0.29  Score=26.66  Aligned_cols=41  Identities=29%  Similarity=0.402  Sum_probs=17.6

Q ss_pred             CCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             77898984385334564322334752334303444544321
Q gi|254780802|r  166 VLANEQVINGRGWRSDAPVEQRSLPQWFFKISDLSQELLDS  206 (869)
Q Consensus       166 ~la~~Ev~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  206 (869)
                      .++-.++.+..|+.|+...+.++...+||+++++.+.|.+.
T Consensus       164 ~~~P~~l~~p~~~i~g~~p~~r~~~hyFf~L~~~~~~L~~~  204 (558)
T COG0143         164 TLDPTELINPVCVISGATPEVREEEHYFFRLSKFQDKLLEW  204 (558)
T ss_pred             CCCCHHCCCCEEEEECCCCCCCCCEEEEEEHHHHHHHHHHH
T ss_conf             57921217981686479764335405998879869999999


No 127
>TIGR00464 gltX_bact glutamyl-tRNA synthetase; InterPro: IPR004527   The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases .    Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of E. coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure . ; GO: 0000166 nucleotide binding, 0004818 glutamate-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006424 glutamyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=84.22  E-value=0.46  Score=25.28  Aligned_cols=92  Identities=18%  Similarity=0.225  Sum_probs=49.3

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEC
Q ss_conf             89789874004779778999999777189855676881402058999999809999999999999999999981917664
Q gi|254780802|r   43 PYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQLQSIGLSIDW  122 (869)
Q Consensus        43 Py~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~~~~lG~~~DW  122 (869)
                      |-|||.||||-+||=+-==.+||-  ..|.=+|+.==.                +-.-...+..+.+.+.|+=||+..|=
T Consensus         8 PSPTG~LHiGg~RTAlFNyLfAr~--~~G~F~lRiEDT----------------D~eR~~~e~~~~i~e~LkWlGi~wDE   69 (513)
T TIGR00464         8 PSPTGYLHIGGARTALFNYLFARH--TGGKFILRIEDT----------------DLERNIEEAEESILEGLKWLGISWDE   69 (513)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHH--CCCCEEEEEEEC----------------CCCCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf             888754353368999999999986--389379987536----------------71007244689999888745867466


Q ss_pred             CCCEECCC--HHHHH---HHH-HHHHHHHHCCCEEEC
Q ss_conf             69821477--35999---999-999999988963412
Q gi|254780802|r  123 SKDFATCD--VDYYH---CQQ-LLFLDFMKHNVIVRK  153 (869)
Q Consensus       123 ~r~y~T~d--~~y~~---~v~-w~f~~L~~kGliyrg  153 (869)
                      + .+.--+  |-|..   .+- ....+|-++|+.||=
T Consensus        70 s-~~~gG~Y~Py~QS~R~~~Y~~~~~~Ll~~g~AYrC  105 (513)
T TIGR00464        70 S-VYVGGNYGPYYQSQRLDIYKKYIKELLEEGLAYRC  105 (513)
T ss_pred             C-CCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf             7-56898630111013678999999999745993442


No 128
>TIGR00467 lysS_arch lysyl-tRNA synthetase; InterPro: IPR002904   The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases .   Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and some eubacteria . Moreover in some eubacteria there is a gene X, which is similar to a part of lysyl-tRNA synthetase from class II. Lysyl-tRNA synthetase is duplicated in some species with, for example in E. coli, as a constitutive gene (lysS) and an induced one (lysU). A refined crystal structures shows that the active site of lysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding .; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=81.29  E-value=3.3  Score=19.36  Aligned_cols=63  Identities=16%  Similarity=0.244  Sum_probs=45.6

Q ss_pred             CCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCC-CCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             742100000012222100123463356665530133-211111343210114556778899999
Q gi|254780802|r  627 PLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSP-PDRDIIWSNKGVDSTYQFIQQIWRLIY  689 (869)
Q Consensus       627 ~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~~~~~~~-~~~d~~~s~~~i~~~~rfl~kl~~l~~  689 (869)
                      .|-+||.|+|.++...++++-+..+.+|+-++...| ....+.|+...+...+..+.++-++..
T Consensus       279 ~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~d~~~~~d~~~~~d~~~~~~~  342 (539)
T TIGR00467       279 KGGPLSSSKGDVLPVKDWLEVYPPEILRFLLLRTKPNTEKHIDFDLGKIPDLGDDYDKLEDFYY  342 (539)
T ss_pred             CCCCCCCCCCCEEEHHHHHHHCCHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHHH
T ss_conf             2332323456323233454421435755545311677521220240232356777777777762


No 129
>TIGR00233 trpS tryptophanyl-tRNA synthetase; InterPro: IPR002306   The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases .    Tryptophanyl-tRNA synthetase (6.1.1.2 from EC) is an alpha2 dimer that belongs to class Ib. The crystal structure of tryptophanyl-tRNA synthetase is known .; GO: 0000166 nucleotide binding, 0004830 tryptophan-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006436 tryptophanyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=71.18  E-value=2.4  Score=20.33  Aligned_cols=16  Identities=44%  Similarity=0.316  Sum_probs=12.6

Q ss_pred             CCCCHHHCCC---CCCCCC
Q ss_conf             4210000001---222210
Q gi|254780802|r  628 LEKMSKSKKN---VIDPMK  643 (869)
Q Consensus       628 g~KMSKSkGN---vi~p~~  643 (869)
                      -+|||||.=|   +|.+.|
T Consensus       221 ~kKMSkS~p~~~~~IfL~D  239 (366)
T TIGR00233       221 KKKMSKSDPNQNSAIFLTD  239 (366)
T ss_pred             CCCCCCCCCCCCCEECCCC
T ss_conf             5355556788882020798


No 130
>TIGR02220 phg_TIGR02220 phage conserved hypothetical protein, C-terminal domain; InterPro: IPR011741   This entry represents the conserved C-terminal domain of a family of proteins found exclusively in bacteriophage and in bacterial prophage regions. The functions of this domain and the proteins containing it are unknown..
Probab=63.82  E-value=3.3  Score=19.39  Aligned_cols=36  Identities=22%  Similarity=0.481  Sum_probs=21.5

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf             43222221000145576754535556777777513653200134443232
Q gi|254780802|r  213 WPEKVKIMQKNWIGRSEGMEIRWEIVSNTIDQIEEILVYTTRPETIFGAS  262 (869)
Q Consensus       213 ~p~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~TtrPeTl~g~~  262 (869)
                      .-..|-.+...|+|...+         +..+...||     ||+||||+.
T Consensus        40 FK~VID~k~~~W~Gt~~~---------nG~~~e~YL-----RP~TLFg~K   75 (83)
T TIGR02220        40 FKKVIDNKVSEWLGTEFR---------NGKKAEKYL-----RPKTLFGNK   75 (83)
T ss_pred             CCCHHHHHHHHHCCCCCC---------CCCCHHHCC-----CCCCCCCCC
T ss_conf             312011210434275345---------784411347-----863335788


No 131
>pfam01927 DUF82 Protein of unknown function DUF82. This prokaryotic protein family has no known function. The protein contains four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=62.71  E-value=4.5  Score=18.43  Aligned_cols=89  Identities=12%  Similarity=0.188  Sum_probs=43.9

Q ss_pred             HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCEECCCHHHHHHHHHHHH
Q ss_conf             99977718985567688140205899999980999999999999999999998191766469821477359999999999
Q gi|254780802|r   63 VARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFL  142 (869)
Q Consensus        63 ~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~  142 (869)
                      +|||.||.||++++..+.+-  --+...|.+.+-   .......+-.++....-++.+      .+.+      ...|+.
T Consensus        12 LAr~LR~lG~Dt~~~~~~~D--~~l~~~A~~E~R---ilLTrD~~L~~r~~~~~~~ll------~~~~------~~~Ql~   74 (146)
T pfam01927        12 LARWLRLLGYDTLYDNDFED--DELLAIAAKEGR---ILLTRDRGLLKRRLLTGGVLV------RSLD------PEEQLR   74 (146)
T ss_pred             HHHHHHHCCCCEEECCCCCH--HHHHHHHHHCCC---EEEECCHHHHHHCCCCCEEEE------CCCC------HHHHHH
T ss_conf             99999986988701599985--999999866498---999678899973323784997------8999------999999


Q ss_pred             HHHHC-CCEEECCEEEECCCCCCCCCC
Q ss_conf             99988-963412213321477676778
Q gi|254780802|r  143 DFMKH-NVIVRKTAQVNWDPVEQTVLA  168 (869)
Q Consensus       143 ~L~~k-Gliyrg~~pV~wcp~~~t~la  168 (869)
                      .+.+. |+-..-...-.=||.|+.+|-
T Consensus        75 ev~~~~~l~~~~~~~~sRC~~CN~~L~  101 (146)
T pfam01927        75 EVIERFGLKLSLKPEFSRCLKCNGPLE  101 (146)
T ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCCCE
T ss_conf             999966997433777785656798995


No 132
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=62.28  E-value=9  Score=16.38  Aligned_cols=18  Identities=11%  Similarity=0.335  Sum_probs=7.7

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999988
Q gi|254780802|r  705 SLISKSTKFLERIEENYQ  722 (869)
Q Consensus       705 ~ils~~~~~i~~v~~~~e  722 (869)
                      .||.+..+.-.....++|
T Consensus       443 ~~l~eaak~~~eL~~Ale  460 (477)
T CHL00040        443 EIIREAAKWSPELAAACE  460 (477)
T ss_pred             HHHHHHHHHCHHHHHHHH
T ss_conf             999999842989999999


No 133
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit; InterPro: IPR004486 This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.; GO: 0006730 one-carbon compound metabolic process.
Probab=61.66  E-value=9.3  Score=16.30  Aligned_cols=11  Identities=45%  Similarity=0.939  Sum_probs=4.1

Q ss_pred             CCCCCCCCCCC
Q ss_conf             13321111134
Q gi|254780802|r  660 DSPPDRDIIWS  670 (869)
Q Consensus       660 ~~~~~~d~~~s  670 (869)
                      .+|.++|..|-
T Consensus       331 ~~PieedteWG  341 (401)
T TIGR00381       331 DSPIEEDTEWG  341 (401)
T ss_pred             CCCCCCCCCCC
T ss_conf             67866678888


No 134
>pfam01314 AFOR_C Aldehyde ferredoxin oxidoreductase, domains 2 & 3. Aldehyde ferredoxin oxidoreductase (AOR) catalyses the reversible oxidation of aldehydes to their corresponding carboxylic acids with their accompanying reduction of the redox protein ferredoxin. This family is composed of two structural domains that bind the tungsten cofactor via DXXGL(C/D) motifs. In addition to maintaining specific binding interactions with the cofactor, another role for domains 2 and 3 may be to regulate substrate access to AOR.
Probab=57.04  E-value=11  Score=15.78  Aligned_cols=12  Identities=0%  Similarity=-0.067  Sum_probs=4.7

Q ss_pred             CCCCCCHHHHHH
Q ss_conf             134321011455
Q gi|254780802|r  668 IWSNKGVDSTYQ  679 (869)
Q Consensus       668 ~~s~~~i~~~~r  679 (869)
                      +++.+.+..+..
T Consensus       297 ~~t~eel~~~ge  308 (382)
T pfam01314       297 DYTPEELLKAGE  308 (382)
T ss_pred             CCCHHHHHHHHH
T ss_conf             899999999999


No 135
>COG5270 PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis]
Probab=55.95  E-value=3.9  Score=18.91  Aligned_cols=26  Identities=15%  Similarity=0.100  Sum_probs=21.2

Q ss_pred             HHCCCEEECCEEEECCCCCCCCCCHH
Q ss_conf             98896341221332147767677898
Q gi|254780802|r  145 MKHNVIVRKTAQVNWDPVEQTVLANE  170 (869)
Q Consensus       145 ~~kGliyrg~~pV~wcp~~~t~la~~  170 (869)
                      .+++-.+-|..|++||-.|+-|+-..
T Consensus         2 ~kk~~~~~gk~~iyWCe~cNlPl~~~   27 (202)
T COG5270           2 RKKMPVVLGKFPIYWCEKCNLPLLGR   27 (202)
T ss_pred             CCCCCEEECCCCEEEHHHCCCCCCCC
T ss_conf             75553030543064132288743555


No 136
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase; InterPro: IPR011981    This enzyme catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. 4-hydroxyphenylacetate arises from the degradation of tyrosine. The substrate, 3,4-dihydroxyphenylacetate (homoprotocatechuate) arises from the action of a hydroxylase on 4-hydroxyphenylacetate. The aromatic ring is opened by this dioxygenase exo to the 3,4-diol resulting in 2-hydroxy-5-carboxymethylmuconate semialdehyde..
Probab=55.26  E-value=4  Score=18.78  Aligned_cols=22  Identities=14%  Similarity=0.308  Sum_probs=9.3

Q ss_pred             HCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             1314589998865311112455
Q gi|254780802|r  278 CDNTDIKEFCDEEKQKGTSLSV  299 (869)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~  299 (869)
                      ....++.++.+..+..|...+.
T Consensus        69 ~~~Edld~l~~~~~~~G~~~~~   90 (312)
T TIGR02295        69 SKEEDLDKLADFFQELGLPVRL   90 (312)
T ss_pred             CCCHHHHHHHHHHHHCCCEEEE
T ss_conf             8805689999999957975889


No 137
>cd07963 Anticodon_Ia_Cys Anticodon-binding domain of cysteinyl tRNA synthetases. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA.
Probab=54.50  E-value=12  Score=15.51  Aligned_cols=64  Identities=13%  Similarity=0.239  Sum_probs=42.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHH
Q ss_conf             321011455677889999976302466789756999999999999999998-8168899999999999999999
Q gi|254780802|r  671 NKGVDSTYQFIQQIWRLIYNAKDELQTSSTKKDISLISKSTKFLERIEENY-QNLSFNKAVANIHELVNVISKP  743 (869)
Q Consensus       671 ~~~i~~~~rfl~kl~~l~~~~~~~~~~~~~~~D~~ils~~~~~i~~v~~~~-e~~~f~~ai~~i~~f~n~ls~~  743 (869)
                      ++.+..+.+-|.|+|+.+....... .. ...+       ....++...+| +.|....|++.+++++..+++.
T Consensus         1 de~L~~Ak~~Ldrly~~l~~~~~~~-~~-~~~~-------~~~~~~F~~Am~DDlNTp~Ala~lf~~vk~iN~~   65 (156)
T cd07963           1 DDNLEDARAALERLYTALRGVPPTT-VD-IDWG-------EPFAERFIAAMDDDFNTPEALAVLFELAREINRL   65 (156)
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCC-CC-CCHH-------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf             9359999999999999985778554-56-4001-------6899999999876348799999999999999986


No 138
>KOG1149 consensus
Probab=51.91  E-value=12  Score=15.46  Aligned_cols=21  Identities=19%  Similarity=0.605  Sum_probs=11.6

Q ss_pred             HHHHHHHHCCCHHHHHHHHHH
Q ss_conf             999999972234389999999
Q gi|254780802|r  764 LEKLIIMMSPMIPHLAEECWQ  784 (869)
Q Consensus       764 l~~l~~lLaPi~PhiaEEiw~  784 (869)
                      +..++.+|.|++--+..+.|+
T Consensus       439 ia~l~~~l~~~~~~~~~~e~n  459 (524)
T KOG1149         439 IAHLLKILNPSALELEQDEWN  459 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
T ss_conf             999986552666665389999


No 139
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=51.13  E-value=5.3  Score=17.96  Aligned_cols=16  Identities=13%  Similarity=-0.012  Sum_probs=13.3

Q ss_pred             EEECCEEEECCCCCCC
Q ss_conf             3412213321477676
Q gi|254780802|r  150 IVRKTAQVNWDPVEQT  165 (869)
Q Consensus       150 iyrg~~pV~wcp~~~t  165 (869)
                      -|+...|..|||-|+.
T Consensus         8 dy~~~~~~~WCpGCG~   23 (286)
T PRK11866          8 DYAVKRPPIWCPGCGN   23 (286)
T ss_pred             HCCCCCCCCCCCCCCC
T ss_conf             8088999866899971


No 140
>KOG3361 consensus
Probab=50.11  E-value=6.4  Score=17.40  Aligned_cols=19  Identities=32%  Similarity=0.422  Sum_probs=15.5

Q ss_pred             CCCCCCCCCCCCCCCCCCCC
Q ss_conf             23454533322211134672
Q gi|254780802|r  330 NFVFMNYGTGAIFGCPFADQ  349 (869)
Q Consensus       330 ~~V~~~~GTG~V~~~P~h~~  349 (869)
                      +--+++.|||+| .||++|.
T Consensus        47 dK~dpnVGtGlV-GAPACGD   65 (157)
T KOG3361          47 DKNDPNVGTGLV-GAPACGD   65 (157)
T ss_pred             CCCCCCCCCCCC-CCCCCCC
T ss_conf             789997655553-5765220


No 141
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric; InterPro: IPR006004    One pathway for the assimilation of ammonia and glutamate biosynthesis involves homotetrameric glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate .  2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. .
Probab=48.95  E-value=6.2  Score=17.50  Aligned_cols=27  Identities=15%  Similarity=0.155  Sum_probs=16.5

Q ss_pred             HCCCCHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf             013564665488899997404677520
Q gi|254780802|r  394 LDGMTNTEALQAVMSHLEKQNIKNSPI  420 (869)
Q Consensus       394 ~~g~~~~~~~~~i~~~l~~~~~~~~~~  420 (869)
                      ..++...-|+++=++++++.+++..+.
T Consensus       315 RrtRedmtAr~EEi~ha~eEGVkfhfl  341 (462)
T TIGR01316       315 RRTREDMTAREEEIKHAEEEGVKFHFL  341 (462)
T ss_pred             ECCCCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf             547775136699999885389289987


No 142
>PRK13794 hypothetical protein; Provisional
Probab=47.87  E-value=12  Score=15.45  Aligned_cols=33  Identities=6%  Similarity=0.048  Sum_probs=23.8

Q ss_pred             CEEECCEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCC
Q ss_conf             63412213321477676778989843853345643223
Q gi|254780802|r  149 VIVRKTAQVNWDPVEQTVLANEQVINGRGWRSDAPVEQ  186 (869)
Q Consensus       149 liyrg~~pV~wcp~~~t~la~~Ev~~g~~~~~~~~v~~  186 (869)
                      ..|-|+-.++||..|+.||-..     .|..|+.+...
T Consensus         2 ~~~lgk~~l~WC~~CNvPll~~-----~C~~CG~~~~~   34 (473)
T PRK13794          2 KTYLGKIHLKWCDNCNTPVLDK-----KCAICGSETRE   34 (473)
T ss_pred             CCEEEEEEEEECCCCCCCCCCC-----CHHHCCCCCEE
T ss_conf             6456016888847789711457-----00121787049


No 143
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase; InterPro: IPR010121   Pyruvate phosphate dikinase (PPDK, or pyruvate orthophosphate dikinase) is found in plants, bacteria and archaea. The amino acid sequence identity between bacterial and plant enzymes is high, and they are similar in sequence to other PEP-utilizing enzymes. PPDK catalyses the reversible conversion of ATP and pyruvate to AMP and PEP (phosphoenolpyruvate). In bacteria such as Clostridium symbiosum, PPDK uses Mg2+ and NH4+ ions as cofactors . The enzyme has three domains: the N- and C-terminal domains each have an active site centre that catalyses a different step in the reaction, and the middle domain has a carrier histidine residue that moves between the two active centres.   In plants, PPDK is localised predominantly in chloroplast stroma where it catalyses the rate-limiting step in the C4 photosynthetic pathway, namely the synthesis of PEP, which acts as the primary CO2 acceptor in C4 photosynthesis . PPDK activity in C4 plants is strictly regulated by light, its activity decreasing in darkness. This response is regulated by phosphorylation and dephosphorylation of the enzyme using ADP; such regulation is not seen in the bacterial form of the enzyme. PPDK is also found in C3 plants, but it is not known to have a photosynthetic role .; GO: 0050242 pyruvate phosphate dikinase activity.
Probab=47.63  E-value=15  Score=14.79  Aligned_cols=37  Identities=5%  Similarity=-0.001  Sum_probs=25.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHC-CHHHHHHHCCCCCEEE
Q ss_conf             679980888899999999974-7888998469982599
Q gi|254780802|r  821 RACITVSMNTDDDFIKKTVLE-LNVIKNILQGKSPKKI  857 (869)
Q Consensus       821 r~~i~v~~~~~~~~i~~~~~~-~~~i~~~l~~k~~~k~  857 (869)
                      .-.|.|+.-.++++++.+-.. ++.|.+.+..+.-.++
T Consensus       747 ~pEIMIPLv~~~~EL~~l~~~v~~~v~~~v~~~~g~~~  784 (920)
T TIGR01828       747 HPEIMIPLVGEKNELKILKELVIEEVAAEVFKEYGVTL  784 (920)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEE
T ss_conf             55214555787789999999999999999986367230


No 144
>PRK13795 hypothetical protein; Provisional
Probab=46.51  E-value=11  Score=15.72  Aligned_cols=33  Identities=9%  Similarity=-0.043  Sum_probs=23.8

Q ss_pred             CCEEECCEEEECCCCCCCCCCHHHHHCCCCCCCCCCCC
Q ss_conf             96341221332147767677898984385334564322
Q gi|254780802|r  148 NVIVRKTAQVNWDPVEQTVLANEQVINGRGWRSDAPVE  185 (869)
Q Consensus       148 Gliyrg~~pV~wcp~~~t~la~~Ev~~g~~~~~~~~v~  185 (869)
                      +-+|-|+..++||+.|+.||-..     .|..|+.+..
T Consensus         3 ~p~~lgk~~l~WC~~CNvPll~~-----~C~~cg~~~~   35 (630)
T PRK13795          3 RPVYLGKMYIYWCEKCNLPLLGK-----RCGACGCEGF   35 (630)
T ss_pred             CCEEEEEEEEEECCCCCCEECCC-----CCCCCCCCCE
T ss_conf             85265016999858889732157-----5522268824


No 145
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=46.27  E-value=7.2  Score=17.04  Aligned_cols=17  Identities=12%  Similarity=0.169  Sum_probs=14.1

Q ss_pred             CEEECCEEEECCCCCCC
Q ss_conf             63412213321477676
Q gi|254780802|r  149 VIVRKTAQVNWDPVEQT  165 (869)
Q Consensus       149 liyrg~~pV~wcp~~~t  165 (869)
                      +.|++..++.|||-|+.
T Consensus         4 ~dr~~~~~~~WCPGCG~   20 (284)
T PRK11869          4 FDRPGSIDIAWCPGCGN   20 (284)
T ss_pred             CCCCCCCCCCCCCCCCC
T ss_conf             43678998757899975


No 146
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha subunit, Gram-positive type; InterPro: IPR006308   These are the polypeptide chains of DNA polymerase III. Full-length homologs of this protein are restricted to the Gram-positive lineages, including the Mycoplasmas. This protein is designated alpha chain and given the gene symbol polC, but is not a full-length homolog of other polC genes. The N-terminal region of about 200 amino acids is rich in low-complexity sequence and poorly alignable. ; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0005737 cytoplasm.
Probab=46.03  E-value=16  Score=14.63  Aligned_cols=69  Identities=23%  Similarity=0.335  Sum_probs=31.4

Q ss_pred             CCCCEECCCCCCCEEEEEE-ECCCC-CCCCCCC---CCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             3786103777774157763-11234-5453332---22111346721101221035443210167765554222
Q gi|254780802|r  309 YTGIHVKHPLNPNVVIPVY-IANFV-FMNYGTG---AIFGCPFADQRDMDFAKKYGLPIIPIMKRSINHSQDIE  377 (869)
Q Consensus       309 ~~G~~~~~P~~~~~~ipv~-~~~~V-~~~~GTG---~V~~~P~h~~~D~~~~~k~glpi~~v~~~~~~~~~~~~  377 (869)
                      ++|+.-.|||.|+..=|== -.+|+ |...|.|   ....||-||....-..-=++||+--=++-.|+.-.|++
T Consensus       705 l~gITEVNPL~PHY~Cp~Cky~Ef~~D~~~~~GfDLp~K~CP~Cgak~pl~kDG~~IPFETFLGF~GDKVPDID  778 (1264)
T TIGR01405       705 LTGITEVNPLPPHYLCPNCKYSEFVTDGSVGSGFDLPDKDCPKCGAKAPLKKDGQDIPFETFLGFKGDKVPDID  778 (1264)
T ss_pred             HCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             21661157576875087873553003787788776857888888877763457369985001677888468644


No 147
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=39.80  E-value=20  Score=14.00  Aligned_cols=15  Identities=13%  Similarity=-0.146  Sum_probs=6.2

Q ss_pred             ECCCCCCCCCCHHHH
Q ss_conf             214776767789898
Q gi|254780802|r  158 NWDPVEQTVLANEQV  172 (869)
Q Consensus       158 ~wcp~~~t~la~~Ev  172 (869)
                      +.||.|+.-.+..|+
T Consensus       100 Y~C~~C~~ryt~~eA  114 (147)
T smart00531      100 YKCPNCQSKYTFLEA  114 (147)
T ss_pred             EECCCCCCEECHHHH
T ss_conf             889999978629999


No 148
>pfam04405 ScdA_N Domain of Unknown function (DUF542). This domain is always found in conjunction with the HHE domain (pfam03794) at the N-terminus.
Probab=36.87  E-value=22  Score=13.69  Aligned_cols=47  Identities=21%  Similarity=0.223  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCCCH-HHHHHHHHHCCCHHHHH
Q ss_conf             977899999977718985567688140205-89999998099999999
Q gi|254780802|r   56 NYVIGDVVARFMRASGYSVLHPMGWDAFGM-PAENAAREHNVHPKMWT  102 (869)
Q Consensus        56 ~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~Gl-Pie~~~~e~~~~~~~~~  102 (869)
                      +.|+.|+++++-+-..-==-|..-|=|+|- |++.++.++++++....
T Consensus         2 ~~tvgeiv~~~p~~a~vF~~~gIDFCCgG~~~L~eA~~~~~ld~~~vl   49 (56)
T pfam04405         2 NQTVGEIVAEDPRAARVFRKYGIDFCCGGKVSLAEACKEKGLDPEEVL   49 (56)
T ss_pred             CCCHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCHHHHH
T ss_conf             771999999794799999994966568998069999988298999999


No 149
>TIGR00357 TIGR00357 methionine-R-sulfoxide reductase; InterPro: IPR002579   Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine . It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set , .   The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represents MsrB, the crystal structure of which has been determined to 1.8A . The overall structure shows no resemblance to the structures of MsrA (IPR002569 from INTERPRO) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. Unlike the MsrA domain, the MsrB domain activates the cysteine or selenocysteine nucleophile through a unique Cys-Arg-Asp/Glu catalytic triad. The collapse of the reaction intermediate most likely results in the formation of a sulphenic or selenenic acid moiety. Regeneration of the active site occurs through a series of thiol-disulphide exchange steps involving another active site Cys residue and thioredoxin.   In a number of pathogenic bacteria, including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis, a thioredoxin domain is fused to the N-terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains. ; GO: 0008113 peptide-methionine-(S)-S-oxide reductase activity.
Probab=34.22  E-value=11  Score=15.66  Aligned_cols=21  Identities=29%  Similarity=0.657  Sum_probs=11.6

Q ss_pred             HCCCCCCCCCCCCCCCCCCCC--CCCC
Q ss_conf             013676443564323456664--3332
Q gi|254780802|r  490 CVKCGSEALRETDTMDTFVDS--SWYY  514 (869)
Q Consensus       490 ~~~~~~~~~r~~dvld~w~dS--~~~~  514 (869)
                      |..||.++....|-+    ||  ||+.
T Consensus        43 di~~g~PLF~S~dKF----dSGcGWPS   65 (135)
T TIGR00357        43 DITCGEPLFSSEDKF----DSGCGWPS   65 (135)
T ss_pred             EECCCCCCCCCCCCC----CCCCCCCC
T ss_conf             621688853643753----58787965


No 150
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=33.49  E-value=20  Score=14.02  Aligned_cols=19  Identities=32%  Similarity=0.541  Sum_probs=15.3

Q ss_pred             HHHHHHHCCCCCCCCC-CCC
Q ss_conf             9997771898556768-814
Q gi|254780802|r   63 VARFMRASGYSVLHPM-GWD   81 (869)
Q Consensus        63 ~aRy~rm~G~~Vl~~~-G~d   81 (869)
                      +||+.||.||++.|.- ..|
T Consensus        18 LARwLRllGydt~~~~~~~d   37 (165)
T COG1656          18 LARWLRLLGYDTVYSSNESD   37 (165)
T ss_pred             HHHHHHHCCCCEEEECCCCC
T ss_conf             99999980884254236783


No 151
>pfam07223 DUF1421 Protein of unknown function (DUF1421). This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function.
Probab=31.82  E-value=19  Score=14.19  Aligned_cols=40  Identities=15%  Similarity=0.102  Sum_probs=31.9

Q ss_pred             HHHCCCCCCCCCCCCC-----CCHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             0000012222100123-----463356665530133211111343
Q gi|254780802|r  632 SKSKKNVIDPMKVIKS-----YGADTARLFVLSDSPPDRDIIWSN  671 (869)
Q Consensus       632 SKSkGNvi~p~~~i~~-----yGaD~lRl~~~~~~~~~~d~~~s~  671 (869)
                      |-+-||-+..+|+|||     |.-|-+|-.+.-..+-++.++||.
T Consensus       313 s~~s~nr~P~ddvieKva~MGF~rDqVratvrrltEnGQ~VDlN~  357 (359)
T pfam07223       313 SPQSGNRVPIDDVVEKVATMGFPRDQVRATVRRLTENGQPVDLNV  357 (359)
T ss_pred             CCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             876667774478898877538738899999999865786332102


No 152
>pfam06172 Cupin_5 Cupin superfamily (DUF985). Family of uncharacterized proteins found in bacteria and eukaryotes that belongs to the Cupin superfamily.
Probab=29.76  E-value=29  Score=12.92  Aligned_cols=30  Identities=20%  Similarity=0.153  Sum_probs=19.4

Q ss_pred             EECCCCCCCCCCCCC--CCCCCCCCCCCHHHH
Q ss_conf             311234545333222--111346721101221
Q gi|254780802|r  327 YIANFVFMNYGTGAI--FGCPFADQRDMDFAK  356 (869)
Q Consensus       327 ~~~~~V~~~~GTG~V--~~~P~h~~~D~~~~~  356 (869)
                      +-+..+.+..+-++|  +.+|+++..||++++
T Consensus       108 w~aa~l~~~~~~~Lvsc~VaPGF~f~Dfela~  139 (139)
T pfam06172       108 WFASRLESLGGFSLVGCTVAPGFDFEDFELAE  139 (139)
T ss_pred             EEEEEECCCCCCEEEEEEECCCCCCCCCCCCC
T ss_conf             99878879998199997734979676589369


No 153
>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II; InterPro: IPR011914    RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in some other genome. Domain I (IPR011913 from INTERPRO) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .; GO: 0016773 phosphotransferase activity alcohol group as acceptor, 0016779 nucleotidyltransferase activity, 0005975 carbohydrate metabolic process.
Probab=29.74  E-value=18  Score=14.27  Aligned_cols=15  Identities=20%  Similarity=0.616  Sum_probs=6.4

Q ss_pred             HHHCCCCHHHHHHHH
Q ss_conf             000135646654888
Q gi|254780802|r  392 SFLDGMTNTEALQAV  406 (869)
Q Consensus       392 ~~~~g~~~~~~~~~i  406 (869)
                      .+.+|.+.+...++|
T Consensus       128 ~f~~g~STT~ii~ki  142 (144)
T TIGR02199       128 PFVEGRSTTAIIEKI  142 (144)
T ss_pred             EEECCCCCHHHHHHH
T ss_conf             521798407899998


No 154
>pfam02744 GalP_UDP_tr_C Galactose-1-phosphate uridyl transferase, C-terminal domain. SCOP reports fold duplication with N-terminal domain. Both involved in Zn and Fe binding.
Probab=28.86  E-value=30  Score=12.82  Aligned_cols=11  Identities=18%  Similarity=0.320  Sum_probs=5.8

Q ss_pred             CCCCCCCCCCC
Q ss_conf             21113467211
Q gi|254780802|r  341 IFGCPFADQRD  351 (869)
Q Consensus       341 V~~~P~h~~~D  351 (869)
                      +|++|..+.+.
T Consensus       100 ~HqaP~~~~~~  110 (168)
T pfam02744       100 IHQAPLNAEEL  110 (168)
T ss_pred             HHCCCCCCCCC
T ss_conf             53178986655


No 155
>pfam11931 DUF3449 Domain of unknown function (DUF3449). This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 181 to 207 amino acids in length. This domain has two conserved sequence motifs: PIP and CEICG.
Probab=28.66  E-value=17  Score=14.47  Aligned_cols=14  Identities=14%  Similarity=0.290  Sum_probs=8.6

Q ss_pred             CCHHHCCCCCCCCC
Q ss_conf             10000001222210
Q gi|254780802|r  630 KMSKSKKNVIDPMK  643 (869)
Q Consensus       630 KMSKSkGNvi~p~~  643 (869)
                      -|--|.|||++-..
T Consensus       165 E~ED~eGNVm~~k~  178 (187)
T pfam11931       165 EVEDEEGNVMSKKT  178 (187)
T ss_pred             EEECCCCCCCCHHH
T ss_conf             65537788755988


No 156
>COG4905 Predicted membrane protein [Function unknown]
Probab=28.55  E-value=24  Score=13.52  Aligned_cols=28  Identities=11%  Similarity=0.176  Sum_probs=21.6

Q ss_pred             HHHHHH----HHHHHHCCCEEECCEEEECCCC
Q ss_conf             999999----9999988963412213321477
Q gi|254780802|r  135 HCQQLL----FLDFMKHNVIVRKTAQVNWDPV  162 (869)
Q Consensus       135 ~~v~w~----f~~L~~kGliyrg~~pV~wcp~  162 (869)
                      .++-|+    |+...+|.+++||.-.-+|||.
T Consensus        14 SfiGWvwEt~fcS~~dkk~V~RGFL~GpyCPi   45 (243)
T COG4905          14 SFIGWVWETIFCSVNDKKIVNRGFLTGPYCPI   45 (243)
T ss_pred             HHHHHHHHHHHEEECCCEEEEECCCCCCCCCC
T ss_conf             99999999862430431267501225677761


No 157
>pfam05527 DUF758 Domain of unknown function (DUF758). Family of eukaryotic proteins with unknown function, which are induced by tumour necrosis factor.
Probab=28.44  E-value=30  Score=12.77  Aligned_cols=75  Identities=16%  Similarity=0.096  Sum_probs=31.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf             111134321011455677889999976302466789756999999999999999998816889999999999999
Q gi|254780802|r  665 RDIIWSNKGVDSTYQFIQQIWRLIYNAKDELQTSSTKKDISLISKSTKFLERIEENYQNLSFNKAVANIHELVNV  739 (869)
Q Consensus       665 ~d~~~s~~~i~~~~rfl~kl~~l~~~~~~~~~~~~~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai~~i~~f~n~  739 (869)
                      +.-.|+.+.+.-+.+|-+++-+++.-+....+.+.+..-..+...++.+-..+.+..+..-..+....|....|.
T Consensus        75 Rn~qf~~eEl~~~~~fr~K~~~~amt~iSFyeVdfTfD~~~L~~~L~ecr~~L~~lV~~HLT~KS~~RI~~VF~~  149 (186)
T pfam05527        75 RNNQFSPEELALAERFRKKLHQLAMTAISFYEVDFTFDRNVLSKLLTECRDLLHQLVQRHLTPKSHGRINHVFNH  149 (186)
T ss_pred             HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf             337899999999999999999888998523310100219999999999999999999975776357789999870


No 158
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=25.60  E-value=34  Score=12.44  Aligned_cols=20  Identities=25%  Similarity=0.781  Sum_probs=11.3

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             221123222223422333468463
Q gi|254780802|r  433 CISRQRSWGCPIPVIHCQKCGIVE  456 (869)
Q Consensus       433 ~ISRqr~WG~piPv~~~~~~~~~~  456 (869)
                      ++.|.-|+    |...|.+||.+.
T Consensus       426 flnRRGys----~~l~C~~Cg~v~  445 (730)
T COG1198         426 FLNRRGYA----PLLLCRDCGYIA  445 (730)
T ss_pred             EECCCCCC----CEEECCCCCCCC
T ss_conf             97167765----400425689802


No 159
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=25.52  E-value=31  Score=12.71  Aligned_cols=16  Identities=13%  Similarity=0.596  Sum_probs=9.5

Q ss_pred             HHHCCCCCCCCCCCCC
Q ss_conf             1101367644356432
Q gi|254780802|r  488 IFCVKCGSEALRETDT  503 (869)
Q Consensus       488 ~~~~~~~~~~~r~~dv  503 (869)
                      .|||.|.+++..-++|
T Consensus       342 ayCPHCDGPLF~gK~V  357 (520)
T COG3634         342 AYCPHCDGPLFKGKRV  357 (520)
T ss_pred             EECCCCCCCCCCCCEE
T ss_conf             6688899865179647


No 160
>KOG2623 consensus
Probab=25.43  E-value=27  Score=13.11  Aligned_cols=39  Identities=23%  Similarity=0.200  Sum_probs=23.5

Q ss_pred             ECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf             0474210000001222210012346335666553013321111
Q gi|254780802|r  625 IGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDI  667 (869)
Q Consensus       625 ~~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~~~~~~~~~~d~  667 (869)
                      ...|+|.-||-||.|+++--+    -++.-+|--+.+-+++|+
T Consensus       268 sstG~KlGKSaGnAvWLdp~~----tspy~lYQfF~~~pDd~v  306 (467)
T KOG2623         268 SSTGAKLGKSAGNAVWLDPSK----TSPYHLYQFFASLPDDDV  306 (467)
T ss_pred             CCCCHHHCCCCCCEEEECCCC----CCCHHHHHHHHHCCHHHH
T ss_conf             575113234778628846766----881799999985864679


No 161
>KOG1359 consensus
Probab=25.35  E-value=34  Score=12.41  Aligned_cols=61  Identities=21%  Similarity=0.392  Sum_probs=41.1

Q ss_pred             CCCHH----------HHHHHHHHHCCCCCCEEECCCCCCCHHHHHCCCCEEEEEECCEEEEEEECCCCCCHHHHHHHHHC
Q ss_conf             22343----------89999999828998355178866596786037714989973816679980888899999999974
Q gi|254780802|r  772 SPMIP----------HLAEECWQLLGNAGLVAQQKWPKLDPILEVNTDIILPIQVNGKKRACITVSMNTDDDFIKKTVLE  841 (869)
Q Consensus       772 aPi~P----------hiaEEiw~~Lg~~~~i~~~~WP~~d~~~~~~~~~~~~iqingk~r~~i~v~~~~~~~~i~~~~~~  841 (869)
                      +||+|          ..+.|+   |...-.|.--++|.+.               .||-|-++.++..-+++.|++++.+
T Consensus       344 hPI~pv~lGda~lA~~~ad~l---Lk~Gi~Vigfs~PvVP---------------~gkariRVqiSAaHt~edid~~i~A  405 (417)
T KOG1359         344 HPICPVMLGDARLASKMADEL---LKRGIYVIGFSYPVVP---------------KGKARIRVQISAAHTEEDIDRLIEA  405 (417)
T ss_pred             CCCCCEECCCHHHHHHHHHHH---HHCCCEEEEECCCCCC---------------CCCEEEEEEEEHHCCHHHHHHHHHH
T ss_conf             874232316388888889999---8557169862587678---------------8844799997010478889999999


Q ss_pred             CHHHHHHHC
Q ss_conf             788899846
Q gi|254780802|r  842 LNVIKNILQ  850 (869)
Q Consensus       842 ~~~i~~~l~  850 (869)
                      ...+.+.++
T Consensus       406 f~~vgr~~~  414 (417)
T KOG1359         406 FSEVGRFLN  414 (417)
T ss_pred             HHHHHHHHC
T ss_conf             999887523


No 162
>TIGR02889 spore_YpeB germination protein YpeB; InterPro: IPR014239   Proteins in this entry include the sporulation protein YpeB from Bacillus subtilis. YpeB and the putative spore-cortex-lytic enzyme SleB are required for normal germination. These proteins appear to be restricted to endospore-forming species in the Firmicutes lineage of bacteria, and have been found in all such species to date except Clostridium perfringens. The matching phenotypes of mutants in SleB (called a lytic transglycosylase) and YpeB suggests that YpeB is necessary for SleB to function..
Probab=25.35  E-value=34  Score=12.40  Aligned_cols=17  Identities=24%  Similarity=0.270  Sum_probs=9.4

Q ss_pred             CCHHHHHHHHHHHHHHH
Q ss_conf             56466548889999740
Q gi|254780802|r  397 MTNTEALQAVMSHLEKQ  413 (869)
Q Consensus       397 ~~~~~~~~~i~~~l~~~  413 (869)
                      ++..||.+.+.+.+-+.
T Consensus       238 iS~~EA~~~~~~~~g~~  254 (465)
T TIGR02889       238 ISKEEAKQIARDFLGDN  254 (465)
T ss_pred             HHHHHHHHHHHHHCCCC
T ss_conf             21899999999854745


No 163
>TIGR00018 panC pantoate--beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis . Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway .; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process.
Probab=24.93  E-value=22  Score=13.71  Aligned_cols=21  Identities=19%  Similarity=0.316  Sum_probs=13.6

Q ss_pred             CCCEEECCCCCCCHHHHHCCC
Q ss_conf             983551788665967860377
Q gi|254780802|r  789 AGLVAQQKWPKLDPILEVNTD  809 (869)
Q Consensus       789 ~~~i~~~~WP~~d~~~~~~~~  809 (869)
                      -+.|.+.++|+++|.-++..+
T Consensus       257 ~DY~~l~~~~~L~p~~~~~~~  277 (310)
T TIGR00018       257 VDYVELVDADTLEPVSEIEPT  277 (310)
T ss_pred             EEEEEECCCCCCCCCCCCCCC
T ss_conf             657874278766752133677


No 164
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=24.84  E-value=27  Score=13.09  Aligned_cols=30  Identities=13%  Similarity=0.110  Sum_probs=17.3

Q ss_pred             HHHHHHCCCEEECCEEEECCCCCCCCCCHHH
Q ss_conf             9999988963412213321477676778989
Q gi|254780802|r  141 FLDFMKHNVIVRKTAQVNWDPVEQTVLANEQ  171 (869)
Q Consensus       141 f~~L~~kGliyrg~~pV~wcp~~~t~la~~E  171 (869)
                      |....++|++.-..+ .+|||+|++.-..-+
T Consensus         9 F~~~~~~~~~lV~Fy-apWC~~Ck~~~P~w~   38 (104)
T cd03000           9 FKDVRKEDIWLVDFY-APWCGHCKKLEPVWN   38 (104)
T ss_pred             HHHHHCCCEEEEEEE-CCCCHHHHHCCHHHH
T ss_conf             878846992999998-998987982318999


No 165
>TIGR02652 TIGR02652 conserved hypothetical protein TIGR02652; InterPro: IPR013472    These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N-terminus..
Probab=24.84  E-value=33  Score=12.56  Aligned_cols=18  Identities=11%  Similarity=0.076  Sum_probs=11.5

Q ss_pred             ECCCCCCCCCCHHHHHCC
Q ss_conf             214776767789898438
Q gi|254780802|r  158 NWDPVEQTVLANEQVING  175 (869)
Q Consensus       158 ~wcp~~~t~la~~Ev~~g  175 (869)
                      .=||+|++.++-.-+.|-
T Consensus        11 I~CPHCRQ~i~ALTLTDt   28 (172)
T TIGR02652        11 IRCPHCRQIIAALTLTDT   28 (172)
T ss_pred             CCCCCCCCCHHHHHHHHH
T ss_conf             558854340023343234


No 166
>TIGR01011 rpsB_bact ribosomal protein S2; InterPro: IPR005706   Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits.    Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , .    This family describes the bacterial, mitochondrial and chloroplast forms of ribosomal protein S2.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015935 small ribosomal subunit.
Probab=24.56  E-value=33  Score=12.52  Aligned_cols=12  Identities=42%  Similarity=0.504  Sum_probs=5.9

Q ss_pred             HHHHCCCCCCCC
Q ss_conf             344014555443
Q gi|254780802|r  537 VDQYIGGIEHAV  548 (869)
Q Consensus       537 ~D~~i~g~d~~~  548 (869)
                      +|+.|-|.|+++
T Consensus       196 vD~~IPgNDDai  207 (227)
T TIGR01011       196 VDYPIPGNDDAI  207 (227)
T ss_pred             CCCCCCCCCCHH
T ss_conf             650257973058


No 167
>cd00736 bacteriophage_lambda_lysozyme The lysozyme from bacteriophage lambda hydrolyses the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetylglucosamine (GlcNAc), as do other lysozymes.  But unlike other lysozymes, bacteriophage lambda does not produce a reducing end upon cleavage of the peptidoglycan but rather uses the 6-OH of the same MurNAc residue to produce a 1,6-anhydromuramic acid terminal residue and is therefore a lytic transglycosylase. An identical 1,6-anhydro bond is formed in bacterial peptidoglycans by the action of the lytic transglycosylases of E. coli. However, they differ structurally.
Probab=24.41  E-value=36  Score=12.29  Aligned_cols=60  Identities=13%  Similarity=0.181  Sum_probs=37.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf             21011455677889999976302466789756999999999999999998816889999999
Q gi|254780802|r  672 KGVDSTYQFIQQIWRLIYNAKDELQTSSTKKDISLISKSTKFLERIEENYQNLSFNKAVANI  733 (869)
Q Consensus       672 ~~i~~~~rfl~kl~~l~~~~~~~~~~~~~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai~~i  733 (869)
                      ....+-|+||.++|.-......-.+..+...|+..+..+.+.  .+-..+++=++.+|++.+
T Consensus        61 StAAGrYQfl~~TW~~~~~~l~l~dF~P~~QD~~Al~li~~r--gal~~i~~G~~~~ai~kl  120 (151)
T cd00736          61 STAAGRYQFLSRTWDAYAKQYGLYDFSPESQDLVAYQLIRER--GALPDILAGRIEQAIAKL  120 (151)
T ss_pred             CCHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHC--CCHHHHHCCCHHHHHHHH
T ss_conf             623300032598999999864999999278999999999972--866878766899999984


No 168
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family; InterPro: IPR011911   Glutaredoxins , , , also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system .    Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond . It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond.   Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed  that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro.    This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon . Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system..
Probab=23.73  E-value=19  Score=14.15  Aligned_cols=10  Identities=20%  Similarity=0.408  Sum_probs=7.2

Q ss_pred             EEEECCCCCC
Q ss_conf             1332147767
Q gi|254780802|r  155 AQVNWDPVEQ  164 (869)
Q Consensus       155 ~pV~wcp~~~  164 (869)
                      +.++|||-|+
T Consensus         5 Yt~~~Cp~C~   14 (79)
T TIGR02196         5 YTTPWCPPCK   14 (79)
T ss_pred             EEECCCCCHH
T ss_conf             7408982078


No 169
>pfam12621 DUF3779 Phosphate metabolism protein. This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with pfam02714. There are two completely conserved residues (W and D) that may be functionally important. This family is likely to be involved in phosphate metabolism however there is little accompanying literature to confirm this.
Probab=23.19  E-value=38  Score=12.13  Aligned_cols=24  Identities=17%  Similarity=0.374  Sum_probs=20.1

Q ss_pred             EECCEEEECCCCCCCCCCHHHHHC
Q ss_conf             412213321477676778989843
Q gi|254780802|r  151 VRKTAQVNWDPVEQTVLANEQVIN  174 (869)
Q Consensus       151 yrg~~pV~wcp~~~t~la~~Ev~~  174 (869)
                      .++..|+.|.|++.-.+|..||+.
T Consensus        41 v~~~~P~lWIPrD~~GvS~~ei~~   64 (95)
T pfam12621        41 VTAPPPLLWIPRDPMGLSRQEIEH   64 (95)
T ss_pred             CCCCCCEEEEECCCCCCCHHHHHH
T ss_conf             268998588546977758999999


No 170
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=22.96  E-value=21  Score=13.88  Aligned_cols=19  Identities=5%  Similarity=-0.144  Sum_probs=13.8

Q ss_pred             CEEECCEEEECCCCCCCCC
Q ss_conf             6341221332147767677
Q gi|254780802|r  149 VIVRKTAQVNWDPVEQTVL  167 (869)
Q Consensus       149 liyrg~~pV~wcp~~~t~l  167 (869)
                      ++...+-|-.|||-|+.-.
T Consensus         8 ylr~~~~P~~wCpGCG~g~   26 (281)
T PRK09628          8 YLRVDKMPTLWCWGCGDGV   26 (281)
T ss_pred             HHCCCCCCCCCCCCCCCHH
T ss_conf             8335689988788997689


No 171
>smart00836 DALR_1 DALR anticodon binding domain. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids PUBMED:10447505.
Probab=22.76  E-value=38  Score=12.08  Aligned_cols=48  Identities=13%  Similarity=0.211  Sum_probs=40.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             975699999999999999999881688999999999999999999862
Q gi|254780802|r  700 TKKDISLISKSTKFLERIEENYQNLSFNKAVANIHELVNVISKPLMEI  747 (869)
Q Consensus       700 ~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai~~i~~f~n~ls~~y~~~  747 (869)
                      .+.++.++..+.+.-.-+..+.++++.+..+.-++++.+.|+++|-..
T Consensus        35 ~~~E~~Li~~l~~f~~vl~~a~~~~~P~~l~~Yl~~La~~f~~fY~~~   82 (122)
T smart00836       35 EPEELALLRLLARFPEVLEAAAETLEPHRLANYLYDLASAFHSFYNKC   82 (122)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf             999999999999778999999997695899999999999999998438


No 172
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=22.49  E-value=29  Score=12.89  Aligned_cols=18  Identities=11%  Similarity=0.124  Sum_probs=10.9

Q ss_pred             EECCEEEECCCCCCCCCC
Q ss_conf             412213321477676778
Q gi|254780802|r  151 VRKTAQVNWDPVEQTVLA  168 (869)
Q Consensus       151 yrg~~pV~wcp~~~t~la  168 (869)
                      |+....+.|||-|+.-.-
T Consensus        10 ~~~~~~~~wCPGCG~~~i   27 (280)
T PRK11867         10 FLRDQEPRWCPGCGDGAI   27 (280)
T ss_pred             HCCCCCCCCCCCCCCHHH
T ss_conf             467999716899954999


No 173
>KOG0614 consensus
Probab=22.49  E-value=39  Score=12.04  Aligned_cols=22  Identities=23%  Similarity=0.218  Sum_probs=14.7

Q ss_pred             EEEEEECCCCCCCCCEEEEECC
Q ss_conf             6532001344432320033024
Q gi|254780802|r  248 ILVYTTRPETIFGASFIAIAVD  269 (869)
Q Consensus       248 l~~~TtrPeTl~g~~~i~v~~~  269 (869)
                      -+..|-.|+|+||--++..|..
T Consensus       213 ~ll~~m~~gtvFGELAILynct  234 (732)
T KOG0614         213 KLLGKMGAGTVFGELAILYNCT  234 (732)
T ss_pred             EEEECCCCCHHHHHHHHHHCCC
T ss_conf             6663147721456789985784


No 174
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=22.46  E-value=30  Score=12.81  Aligned_cols=23  Identities=26%  Similarity=0.335  Sum_probs=11.6

Q ss_pred             HHHHHHCCCHHHHHHHHHHHCCC
Q ss_conf             99999722343899999998289
Q gi|254780802|r  766 KLIIMMSPMIPHLAEECWQLLGN  788 (869)
Q Consensus       766 ~l~~lLaPi~PhiaEEiw~~Lg~  788 (869)
                      .+..||||..-.+--|+-+.|++
T Consensus       364 DlfMM~hP~sV~vlkei~~tl~~  386 (403)
T COG2069         364 DLFMMMHPTSVAVLKEIGETLTG  386 (403)
T ss_pred             CHHHHHCHHHHHHHHHHHHHHHC
T ss_conf             05542178899999999998725


No 175
>KOG2713 consensus
Probab=22.19  E-value=39  Score=12.00  Aligned_cols=12  Identities=58%  Similarity=0.639  Sum_probs=8.9

Q ss_pred             CCCCCHHHCCCC
Q ss_conf             742100000012
Q gi|254780802|r  627 PLEKMSKSKKNV  638 (869)
Q Consensus       627 ~g~KMSKSkGNv  638 (869)
                      ..+|||||-+|-
T Consensus       208 pekKMSKSd~n~  219 (347)
T KOG2713         208 PEKKMSKSDPNP  219 (347)
T ss_pred             HHHHCCCCCCCC
T ss_conf             355414579997


No 176
>TIGR02902 spore_lonB ATP-dependent protease LonB; InterPro: IPR014251   This entry represents LonB, a paralog of the ATP-dependent protease La (LonA, IPR004815 from INTERPRO). LonB proteins are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ) and are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore during sporulation, under control of sigmaF . The lonB gene, despite being located immediately upstream of lonA, was shown to be monocistronic. LonB appears to be involved in the post-translation control of sigmaH, but lonB mutation did not produce an obvious sporulation defect under the conditions tested . Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and these are excluded from this entry. .
Probab=22.14  E-value=37  Score=12.20  Aligned_cols=35  Identities=23%  Similarity=0.450  Sum_probs=18.5

Q ss_pred             CCCCCCCCCCCCCCCCCCCCC-HHHHHHHCCCHHHHCCCC
Q ss_conf             566643332233555654410-135664114334401455
Q gi|254780802|r  506 TFVDSSWYYMRYMTPHAKDPI-NKELVRQWFPVDQYIGGI  544 (869)
Q Consensus       506 ~w~dS~~~~~~~~~~~~~~~~-~~e~~~~~~P~D~~i~g~  544 (869)
                      +++||..|...    ..+-|. =+|.|+.=|||||++=|.
T Consensus       204 VFLdSAYY~s~----~pniP~hI~dIFqnGlPADFRLiGA  239 (532)
T TIGR02902       204 VFLDSAYYSSE----DPNIPSHIRDIFQNGLPADFRLIGA  239 (532)
T ss_pred             CHHHCCCCCCC----CCCCCHHHHHHHCCCCCCCEECCCC
T ss_conf             00001235877----7865427899720678734012133


No 177
>TIGR01127 ilvA_1Cterm threonine dehydratase; InterPro: IPR005789    Serine and threonine dehydratases ,  are functionally and structurally related pyridoxal-phosphate dependent enzymes. L-serine dehydratase () and D-serine dehydratase () catalyze the dehydratation of L-serine (respectively D-serine) into ammonia and pyruvate. Threonine dehydratase () (TDH) catalyzes the dehydratation of threonine into alpha-ketobutarate and ammonia. In Escherichia coli and other microorganisms, two classes of TDH are known to exist. One is involved in the biosynthesis of isoleucine, the other in hydroxamino acid catabolism. Threonine synthase () is also a pyridoxal-phosphate enzyme, it catalyzes the transformation of homoserine-phosphate into threonine. It has been shown  that threonine synthase is distantly related to the serine/threonine dehydratases. In all these enzymes, the pyridoxal-phosphate group is attached to a lysine residue.    A form of threonine dehydratase with two copies of the C-terminal domain  is described by . This model describes a phylogenetically distinct which branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any  domain. Many members of this model are found in species with other isoleucine biosynthetic enzymes.; GO: 0004794 L-threonine ammonia-lyase activity.
Probab=21.56  E-value=33  Score=12.50  Aligned_cols=64  Identities=16%  Similarity=0.187  Sum_probs=27.8

Q ss_pred             CCCCCCEEEEECCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHH-HHHHCCCCCCCCCEECCCCCCCEEE
Q ss_conf             4432320033024432034541314589998865311112455-5430255323786103777774157
Q gi|254780802|r  257 TIFGASFIAIAVDHSISEKLSCDNTDIKEFCDEEKQKGTSLSV-LDKTEKKGIYTGIHVKHPLNPNVVI  324 (869)
Q Consensus       257 Tl~g~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~G~~~~~P~~~~~~i  324 (869)
                      -.||..+..|.|+..-..++.+....    -++.-..|..+.. ....+.-..-.|..+.|||++++++
T Consensus        68 ~~~Gi~a~IVMPE~aP~~Kv~AT~~y----GAEViL~G~~~DEA~~~A~~~~~~~g~~fvHpF~D~~vm  132 (381)
T TIGR01127        68 KVFGIKAKIVMPEYAPLSKVKATKSY----GAEVILHGADYDEAYALAEELAEEEGRVFVHPFDDEYVM  132 (381)
T ss_pred             HHCCCCCEEECCCCCHHHHHHHHHHC----CCEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCCCEEE
T ss_conf             76187746878876735789997626----961898088707899999999986098787405887786


No 178
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA; InterPro: IPR014072   The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases..
Probab=21.21  E-value=41  Score=11.87  Aligned_cols=16  Identities=13%  Similarity=0.167  Sum_probs=6.7

Q ss_pred             CCCCCCEEEEECCCCC
Q ss_conf             4432320033024432
Q gi|254780802|r  257 TIFGASFIAIAVDHSI  272 (869)
Q Consensus       257 Tl~g~~~i~v~~~~~~  272 (869)
                      +-|++.-|=+++|.|+
T Consensus        56 ~~F~~~~Ve~~ANsPF   71 (176)
T TIGR02699        56 EDFDDLRVEINANSPF   71 (176)
T ss_pred             HHCCCEEEEECCCCCC
T ss_conf             3106405870786781


No 179
>pfam05746 DALR_1 DALR anticodon binding domain. This all alpha helical domain is the anticodon binding domain in Arginyl and glycyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids.
Probab=20.65  E-value=42  Score=11.79  Aligned_cols=48  Identities=15%  Similarity=0.203  Sum_probs=41.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             975699999999999999999881688999999999999999999862
Q gi|254780802|r  700 TKKDISLISKSTKFLERIEENYQNLSFNKAVANIHELVNVISKPLMEI  747 (869)
Q Consensus       700 ~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai~~i~~f~n~ls~~y~~~  747 (869)
                      .+.++.++..+.+.-.-+.++.++++-+..+.-++++.+.++++|-..
T Consensus        31 ~~~E~~Li~~l~~f~~~l~~a~~~~~P~~l~~Yl~~La~~f~~fY~~~   78 (117)
T pfam05746        31 EEEEKELLKALLQFPEVVEEAAEELEPHRLANYLYDLASAFHSFYNNC   78 (117)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             999999999880529999999986686999999999999999999719


No 180
>TIGR01393 lepA GTP-binding protein LepA; InterPro: IPR006297   LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function of the proteins in this family are unknown. ; GO: 0005525 GTP binding.
Probab=20.33  E-value=43  Score=11.75  Aligned_cols=57  Identities=25%  Similarity=0.306  Sum_probs=34.8

Q ss_pred             HHHCCCCCCCCCCCCCCCCCCCCCCHHHC-------CCCCCCCCCHHHCCCCHHHHHHHHHHHHH
Q ss_conf             22103544321016776555422211210-------12334458300013564665488899997
Q gi|254780802|r  354 FAKKYGLPIIPIMKRSINHSQDIEEGKAF-------SGDGIMINSSFLDGMTNTEALQAVMSHLE  411 (869)
Q Consensus       354 ~~~k~glpi~~v~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~i~~~l~  411 (869)
                      ++-+++|+|+||+++=.-++.+++.-...       .....+.-|.. .|.-.++.+++|++.+-
T Consensus       118 lAlE~dLeIIPViNKIDLP~Adpe~v~~eIe~~iGld~~~ai~~SAK-tG~Gi~e~LEaIv~~vP  181 (598)
T TIGR01393       118 LALENDLEIIPVINKIDLPSADPERVKKEIEEVIGLDASEAILASAK-TGIGIEEILEAIVKRVP  181 (598)
T ss_pred             HHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEC-CCCCHHHHHHHHHHCCC
T ss_conf             87561875847782536888885899998765418896430387503-67888999889710181


Done!