RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780802|ref|YP_003065215.1| leucyl-tRNA synthetase
[Candidatus Liberibacter asiaticus str. psy62]
(869 letters)
>gnl|CDD|30841 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 814
Score = 890 bits (2300), Expect = 0.0
Identities = 366/874 (41%), Positives = 518/874 (59%), Gaps = 70/874 (8%)
Query: 4 RSYSPQETDSIWQSAWYDSNIFKA-ENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDV 62
Y+P+E + WQ W ++ +F+A E+ +K++VL MFPYPSG +H+GH+RNY IGDV
Sbjct: 3 SRYNPREIEEKWQKRWEEAKVFEADEDSDKPEKFYVLVMFPYPSGALHVGHVRNYTIGDV 62
Query: 63 VARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQLQSIGLSIDW 122
+AR+ R GY+VLHPMGWDAFG+PAENAA + P WTY NI M+KQL+S+G SIDW
Sbjct: 63 IARYKRMQGYNVLHPMGWDAFGLPAENAAIKIGTDPAKWTYYNIAYMKKQLKSLGFSIDW 122
Query: 123 SKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQVINGRGWRSDA 182
++FATCD +YY Q FL + + RK A VNW PV+ TVLANEQVI+G WR
Sbjct: 123 RREFATCDPEYYKWIQWQFLKLYEKGLAYRKEAPVNWCPVDGTVLANEQVIDGGCWRCGE 182
Query: 183 PVEQRSLPQWFFKISDLSQELLDSIETL-SEWPEKVKIMQKNWIGRSEGMEIRWEIVSNT 241
PVE + L QWFFKI+D + ELLD ++ L + WPE VK MQ+NWIG SEG E+ + +
Sbjct: 183 PVEIKELTQWFFKITDYADELLDDLDKLATLWPETVKGMQRNWIGPSEGYEVAFVVDGE- 241
Query: 242 IDQIEEILVYTTRPETIFGASFIAIAVDHSISEKLSCDNT--DIKEFCDEEKQKGTSLSV 299
++I I V+TTRP+T+FG +++ +A +H + KL + + EF DE K G SV
Sbjct: 242 -EEIVSIEVFTTRPDTLFGVTYVVLAPEHPLVGKLVTNPQTPLVAEFVDECKGTGVVESV 300
Query: 300 LDKTEKKGIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIFGCPFADQRDMDFAKKYG 359
EK G++ G + +P+N IPV+IAN+V M YGTGA+ G P D+RD++FA KY
Sbjct: 301 PAHAEKDGVFLGGYAINPVNGE-KIPVWIANYVLMEYGTGAVMGVPAHDERDLEFATKYK 359
Query: 360 LPIIPIMKRSINHSQDIEEGKAFSGDGIMINSSFLDGMTNTEALQAVMSHLEKQNIKNSP 419
LPI ++ K + G+G++INS LDG+ EA + L K+
Sbjct: 360 LPIKKVIMPE-----GTVGKKVYEGEGVLINSGGLDGLDYEEAKVKIRCGLVKRG----- 409
Query: 420 IGKRKINFRLRDWCISRQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPL 479
+G+ +N+RLRDW SRQR WG PIP+IHC+ CG+V +P++ LPV+LPE + G+PL
Sbjct: 410 LGQWFVNYRLRDWLKSRQRYWGEPIPIIHCEDCGVVPVPEDWLPVKLPERVRGLGTGSPL 469
Query: 480 ENHPTWKKIFCVKCGSEALRETDTMDTFVDSSWYYMRYMTPHAKD--PINKELVRQWFPV 537
W S A RETDTMDTF+DSSWYY+R+ P P ++E W+PV
Sbjct: 470 PWDEEWVIESLPD--STAYRETDTMDTFIDSSWYYLRFFDPIFLGELPFDREEFNYWYPV 527
Query: 538 DQYIGGIEHAVLHLLYARFFAHILKKIGYIEIDEPFKRLFTQGMVVHETYYQLEGIKKKY 597
D YIGGIEHAVLHLLY RFF L G + DEPFK+L TQGMV+ E
Sbjct: 528 DLYIGGIEHAVLHLLYFRFFHKALFDEGLVPKDEPFKKLITQGMVLGEE----------- 576
Query: 598 LKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFV 657
EKMSKSK NV+DP + ++ YGADT RL++
Sbjct: 577 ------------------------------GEKMSKSKGNVVDPEEAVEKYGADTVRLYI 606
Query: 658 LSDSPPDRDIIWSNKGVDSTYQFIQQIWRLIYNAKDELQTSSTKKDI-SLISKSTKFLER 716
+ +PP++D+ WS GV+ +F+Q++W L+ ++L TK+ + +++
Sbjct: 607 MFAAPPEQDLEWSESGVEGARRFLQRVWNLVKEHLEKLVEELTKEQGKEDRWLLHRTIKK 666
Query: 717 IEENY-QNLSFNKAVANIHELVNVISKPLMEIAKKKSNADRISTIRYILEKLIIMMSPMI 775
+ E++ +FN A+A + EL+N + K L + +R LE + +++P
Sbjct: 667 VTEDFEARQTFNTAIAALMELLNALRKYL------RRTEGDRKVLREALETWVRLLAPFA 720
Query: 776 PHLAEECWQLLGNAGLVAQQKWPKLDPILEVNTDIILPIQVNGKKRACITVSMNTDDDFI 835
PH+AEE W+ LGN G V+ WP+ D V ++ + +QVNGK RA V+ + D++ +
Sbjct: 721 PHIAEELWEELGNEGFVSNAPWPEPDEEALVEDEVEIVVQVNGKVRAREVVAADADEEKV 780
Query: 836 KKTVLELNVIKNILQGKSPKKIIIISKRIVNIVV 869
K+ L ++ LQGK+ KK+I + + VNIV
Sbjct: 781 KEIALADEEVQKFLQGKTIKKVIAVPGKPVNIVE 814
>gnl|CDD|35656 KOG0435, KOG0435, KOG0435, Leucyl-tRNA synthetase [Translation,
ribosomal structure and biogenesis].
Length = 876
Score = 754 bits (1948), Expect = 0.0
Identities = 349/887 (39%), Positives = 495/887 (55%), Gaps = 67/887 (7%)
Query: 3 TRSYSPQETDSIWQSAWYDSNIFKAENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDV 62
+ + + W+ D F ++ K+KKKY +L MFPYPSG +H+GH+R Y I D+
Sbjct: 27 KKEIAIAMIEKHWKQYLKDGFPFSKDSDKSKKKY-ILSMFPYPSGALHIGHVRVYTISDI 85
Query: 63 VARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQLQSIGLSIDW 122
+ARF R GY+V+HPMGWDAFG+PAENAA E VHP WT NI M++QL+S+G+S DW
Sbjct: 86 LARFYRMKGYNVIHPMGWDAFGLPAENAAIERGVHPASWTINNIAKMKQQLKSLGISFDW 145
Query: 123 SKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQV-INGRGWRSD 181
++ +TC+ DYY Q +FL + + + A+VNWDPV++TVLANEQV +G WRS
Sbjct: 146 DREISTCEPDYYKWTQWIFLKLFEKGLAYQAEAEVNWDPVDKTVLANEQVDADGCSWRSG 205
Query: 182 APVEQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIRWEIVSNT 241
A VE++ L QWF K + ++ LLD +ETL EWPE VK MQ+NWIGR +G E+ + ++ +
Sbjct: 206 AKVEKKKLRQWFIKTTAYAKRLLDGLETLPEWPE-VKDMQRNWIGRCDGAELMFPLLDDG 264
Query: 242 IDQIEEILVYTTRPETIFGASFIAIAVDHSISEKLSCDNTDIKEFCDEEKQKGTSLSVLD 301
E + VYTTRPET+FGASF+ +A HS+ +K S +KEF +
Sbjct: 265 -SNDEILTVYTTRPETLFGASFLVLAPSHSLLDKDS----SLKEFLSK-----------S 308
Query: 302 KTEKKGIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIFGCPFADQRDMDFAKKYGLP 361
+KG+ K+P+ IPV +A++V YGTGA+ G P DQRD + A+K G+
Sbjct: 309 DLPQKGVQLPCQAKNPVTGR-AIPVVVADYVLDPYGTGAVMGAPGHDQRDKELAQKIGIK 367
Query: 362 IIPIMKRSINHSQDIEEGKAFSGDG-IMINSSFLDGMTNTEALQAVMSHLEKQNIKNSPI 420
I I F+ G +F + A + E++ +
Sbjct: 368 WI------------ICIEVIFTNFGKKNEQKAFTNLDIRQNAALKLFQFAERKG-----V 410
Query: 421 GKRKINFRLRDWCISRQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLE 480
G ++++L+DW ISRQR WG PIP++HC CG V +P+ +LPV LPE DFT G PL
Sbjct: 411 GGYVVSYKLKDWLISRQRYWGTPIPIVHCDDCGAVPVPESELPVTLPELNDFTPKGPPLS 470
Query: 481 NHPTWKKIFCVKCGSEALRETDTMDTFVDSSWYYMRYMTPHAKD-PINKELVRQWFPVDQ 539
W + C +CG A RETDTMDTFVDSSWYY+RY+ P + P +K ++ PVD
Sbjct: 471 KADEWVNVDCPRCGEPAKRETDTMDTFVDSSWYYLRYLDPKNPEEPFDKAKAKKNMPVDV 530
Query: 540 YIGGIEHAVLHLLYARFFAHILKKIGYIEIDEPFKRLFTQGMVVHETYYQLEGIKKKYLK 599
YIGG EHAVLHLLYARF A LK IG + EPF +L TQGMV +T+ E KYL
Sbjct: 531 YIGGKEHAVLHLLYARFIAKFLKDIGVVSTAEPFTKLITQGMVRGKTFRTKE--SGKYLG 588
Query: 600 PDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLS 659
P+EV N F L ++ +VV+ EKMSKSK N +DP V+ YG DT RL++L
Sbjct: 589 PEEVQQVNDHQNK--FVLKNDKEVVVVTYEKMSKSKHNGVDPADVVLEYGVDTTRLYILF 646
Query: 660 DSPPDRDIIWSNKGVDSTYQFIQQIWRLIYNAKDELQTSSTKK-----------DISLIS 708
+PP I W+ + +++Q+IW L+ K L
Sbjct: 647 AAPPRDPINWNESAIPGIKRWLQRIWALVSQILQARDDGKAKDLKKLTDGFDAETRKLKE 706
Query: 709 KSTKFLERIEENYQNL-SFNKAVANIHELVNVISKPLMEIAKKKSNADRISTIRYILEKL 767
F++++ E+Y+ L S N A++++ L N + K L K LE L
Sbjct: 707 TYNFFIKQVTEHYEVLFSLNTAISDMMGLTNALKKAL------KIVLVHSPEFERALEAL 760
Query: 768 IIMMSPMIPHLAEECWQLLGNAG-LVAQQKWPKLDPILEVNTDIILPIQVNGKKRACITV 826
+IM++P PH+A E W L N V+ KWP++DP + +++ P+Q+NGK R I V
Sbjct: 761 VIMLAPFAPHVASELWSALANDLSWVSDVKWPEVDPDYLIEFEVL-PVQINGKVRGKIEV 819
Query: 827 SMNTDDDFIKK---TVLELNVIKNILQGKSPKKIIIISKR-IVNIVV 869
++ + L+ + L+GK KK + +R I+N ++
Sbjct: 820 DRRILEEMMDDALEFALQTEDGRRYLKGKKIKKSFYVPRRKIINFIL 866
>gnl|CDD|30871 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 877
Score = 296 bits (758), Expect = 2e-80
Identities = 201/892 (22%), Positives = 328/892 (36%), Gaps = 270/892 (30%)
Query: 5 SYSPQETDSIWQSAWYDSNIFKAENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVA 64
+Y P+E + W W +S FK + ++K + + P +G++HMGH NY + D++A
Sbjct: 4 TYDPKEIEEKWYKKWEESGYFKPDPNEDKPPFSIDTPPPNVTGSLHMGHALNYTLQDILA 63
Query: 65 RFMRASGYSVLHPMGWDAFGMPAENA----AREHNVHP------------KMWTYQNIKV 108
R+ R GY+VL P G D G+ + + W ++
Sbjct: 64 RYKRMRGYNVLWPPGTDHAGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEESGGT 123
Query: 109 MRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLA 168
+R+QL+ +G+S+DWS++ T D Q F+ + +I R VNW P +T +
Sbjct: 124 IREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLYEKGLIYRGERLVNWCPKCRTAI- 182
Query: 169 NEQVINGRGWRSDAPVEQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRS 228
SD VE + +
Sbjct: 183 -----------SDIEVEYKEVEGKL----------------------------------- 196
Query: 229 EGMEIRWEIVSNTIDQIEEILVYTTRPETIFGASFIAIAVDHSISEKLSCDNTDIKEFCD 288
+ I D ++V TTRPET+ G + A+AV D
Sbjct: 197 ------YYIKYPLADGDGYLVVATTRPETLLGDT--AVAVHP-----------------D 231
Query: 289 EEKQKGTSLSVLDKTEKKGIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIFGCPFAD 348
+E+ K G V PL IP+ +V +GTGA+ P D
Sbjct: 232 DERYKH--------------LVGKEVILPL-VGREIPIIADEYVDPEFGTGAVKITPAHD 276
Query: 349 QRDMDFAKKYGLPIIPIMKRSINHSQDIEEGKAFSGDGIMINSSF--LDGMTNTEALQAV 406
D + K++ LP+I I+ DG + + G+ EA + +
Sbjct: 277 FNDYEVGKRHNLPLINIIDE----------------DGRINEEAAGEFAGLDRFEARKKI 320
Query: 407 MSHLEKQN-------------------------------IKNSPIGKR--------KINF 427
+ LE+Q +K + K+ KI F
Sbjct: 321 VEDLEEQGLLVKIEPHKHSVGHCERCGTPIEPLLSKQWFVKVLELAKKALEAVKDGKIKF 380
Query: 428 --------------RLRDWCISRQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFT 473
+RDWCISRQ WG IPV +C++CG V + +E PED
Sbjct: 381 VPERMEKRYEDWMENIRDWCISRQLWWGHRIPVWYCKECGNVVVAEE-----EPEDP--- 432
Query: 474 LPGNPLENHPTWKKIFCVKCGSEALRETDTMDTFVDSSWYYMRYMTPHA--KDPINKELV 531
C K E ++ D +DT+ SS + P + P +
Sbjct: 433 -----------AAAEKCPKEELE--QDEDVLDTWFSSS------LWPFSTLGWPEETPDL 473
Query: 532 RQWFPVDQYIGGIEHAVLHLLYAR--FFAHILKKIGYIEIDEPFKRLFTQGMVVHETYYQ 589
++++P D + G H ++ AR L + PFK ++ G+V
Sbjct: 474 KKFYPTDLLVTG--HDIIFFWVARMIMRGLHLTG------EVPFKDVYIHGLV------- 518
Query: 590 LEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYG 649
R+ +G KMSKSK NVIDP+ VI YG
Sbjct: 519 ----------------RDEQG------------------RKMSKSKGNVIDPLDVIDKYG 544
Query: 650 ADTARLFVLSDSPPDRDIIWSNKGVDSTYQFIQQIW---RLIYNAKDELQTSSTKKDIS- 705
AD R + S + P RDI + K V+ F+ ++W R + D+L
Sbjct: 545 ADALRFTLASLASPGRDINFDEKRVEGYRNFLNKLWNATRFVLMNLDDLGPDDLDLLALS 604
Query: 706 -----LISKSTKFLERIEENYQNLSFNKAVANIHELV-NVISKPLMEIAKKKSNADR--- 756
++S+ + ++ + E N F++A ++E + N +E+AK +
Sbjct: 605 LADRWILSRLNETVKEVTEALDNYRFDEAARALYEFIWNDFCDWYLELAKPRLYGGEEEK 664
Query: 757 ---ISTIRYILEKLIIMMSPMIPHLAEECWQLLGNAGLVAQQKWPKLDPILE 805
+T+ Y+L+ L+ ++ P +P + EE WQ L + WP++D L
Sbjct: 665 RAARATLYYVLDTLLRLLHPFMPFITEEIWQKLPGTESIHLASWPEVDEELI 716
>gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA
synthetases. Leucyl tRNA synthetase (LeuRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. In Aquifex
aeolicus, the gene encoding LeuRS is split in two, just
before the KMSKS motif. Consequently, LeuRS is a
heterodimer, which likely superimposes with the LeuRS
monomer found in most other organisms. LeuRS has an
insertion in the core domain, which is subject to both
deletions and rearrangements and thus differs between
prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This
editing region hydrolyzes mischarged cognate tRNAs and
thus prevents the incorporation of chemically similar
amino acids.
Length = 314
Score = 244 bits (625), Expect = 9e-65
Identities = 90/216 (41%), Positives = 125/216 (57%), Gaps = 35/216 (16%)
Query: 35 KYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREH 94
K+++L MFPYPSG +H+GH+R Y IGD++AR+ R GY+VL PMG+DAFG+PAENAA +
Sbjct: 1 KFYILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKI 60
Query: 95 NVHPKMWTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKT 154
P+ WT NIK M++QL+ +G S DW ++F TCD +YY Q LFL + + +K
Sbjct: 61 GRDPEDWTEYNIKKMKEQLKRMGFSYDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYKKE 120
Query: 155 AQVNWDPVEQTVLANEQVINGRGWRSDAPVEQRSLPQWFFKIS--DLSQELLDSIETLSE 212
A VNW + L QWF K S + ++LL +E L
Sbjct: 121 APVNWC--------------------------KLLDQWFLKYSETEWKEKLLKDLEKLDG 154
Query: 213 WPEKVKIMQKNWIG----RSEGMEIRWEIVSNTIDQ 244
WPE+V+ MQ+NWIG R G I W +T++
Sbjct: 155 WPEEVRAMQENWIGCSRQRYWGTPIPWT---DTMES 187
Score = 163 bits (415), Expect = 2e-40
Identities = 67/176 (38%), Positives = 82/176 (46%), Gaps = 50/176 (28%)
Query: 501 TDTMDTFVDSSWYYMRYMTPHAKDPI-------NKELVRQWFPVDQYIGGIEHAVLHLLY 553
TDTM++ DS+WYY RY H + ++E W+PVD YIGG EHA HLLY
Sbjct: 182 TDTMESLSDSTWYYARYTDAHNLEQPYEGDLEFDREEFEYWYPVDIYIGGKEHAPNHLLY 241
Query: 554 ARFFAHILKKIGYIEIDEPFKRLFTQGMVVHETYYQLEGIKKKYLKPDEVILRNIEGENC 613
+RF L G + DEP K L QGMV+ E
Sbjct: 242 SRFNHKALFDEGLV-TDEPPKGLIVQGMVLLEG--------------------------- 273
Query: 614 AFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDIIW 669
EKMSKSK NV+ P + IK YGAD ARL++L +PPD D W
Sbjct: 274 ---------------EKMSKSKGNVVTPDEAIKKYGADAARLYILFAAPPDADFDW 314
>gnl|CDD|30409 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 933
Score = 229 bits (585), Expect = 3e-60
Identities = 189/916 (20%), Positives = 331/916 (36%), Gaps = 235/916 (25%)
Query: 5 SYSPQETDSIWQSAWYDSNIF---KAENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGD 61
+ + + W +++I+ + E K K K+ + + PY +GNIH+GH N ++ D
Sbjct: 17 RANLPKKEPKILKFWEENDIYEKIREERNKGKPKFVLHDGPPYANGNIHIGHALNKILKD 76
Query: 62 VVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKM----------------WTYQN 105
++ R+ GY V + GWD G+P E + K + +
Sbjct: 77 IIVRYKTMQGYDVPYVPGWDCHGLPIELKVEKKLGIGKKDIESFGVEEFREKCREFALEQ 136
Query: 106 IKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQT 165
+ ++Q + +G+ DW + T D Y F + + ++ R V W P +T
Sbjct: 137 VDEQKEQFKRLGVWGDWENPYKTMDPSYEESVWWAFKELYEKGLLYRGYKPVPWSPRCET 196
Query: 166 VLANEQVINGRGWRSDAPVEQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWI 225
LA +V E+ +
Sbjct: 197 ALAEAEV---------------------------------------EYGDVK-------- 209
Query: 226 GRSEGMEIRWEIVSNTIDQIEEILVYTTRPETIFGASFIAIAVDHSISEKLSCDNTDI-- 283
+ +++ + +D+ ++++TT P T+ + +AIAV + L N +
Sbjct: 210 --DPSIYVKFPVKDEGLDENAYLVIWTTTPWTL--PANLAIAVHPDLDYVLVEVNGEKLI 265
Query: 284 --KEFCDE--EKQKGTSLSVLDKTEKKGIYTGIHVKHPLN---PNVVIPVYIANFVFMNY 336
K + +K VL +T K G+ +HP + PV + + V ++
Sbjct: 266 LAKALVESVAKKAGVEDYEVL-ETFKGSELEGLRYEHPFYDFVYDRAFPVILGDHVTLDD 324
Query: 337 GTGAIFGCPFADQRDMDFAKKYGL--PIIPIMKRSINHSQDIEEGKAFSGDGIMINSSFL 394
GTG + P + D + KKYGL + P+ EE + G +
Sbjct: 325 GTGLVHTAPGHGEEDYEVGKKYGLLEVLNPVDDNGRY----TEEAPKYEGLFVK------ 374
Query: 395 DGMTNTEALQAVMSHLEKQN-------IKNS---------PIGKR--------------- 423
+A + ++ L+++ I++S P+ R
Sbjct: 375 ------DANKKIIEDLKEKGNLLKSEKIEHSYPHCWRTKTPLIYRATPQWFVSVDKLRDK 428
Query: 424 ------KINF-------RL-------RDWCISRQRSWGCPIPVIHCQKCGIVELPKEDL- 462
K+N+ R DWCISRQR WG PIPV +C++ G + + E+L
Sbjct: 429 MLKEINKVNWVPDWGKNRFGNMVENRPDWCISRQRYWGVPIPVWYCKETGEILVITEELE 488
Query: 463 --PVQLPEDLDFTLPGNPLENHPTWKKIFCVKCGSEALRETDTMDTFVDSSWYYMRYMTP 520
QL E+ P + C + G E R D +D + DS TP
Sbjct: 489 ELVGQLVEEKGIDDWHRPDIDELLPP---CPEDGKEYRRVPDVLDVWFDSG------STP 539
Query: 521 HAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIGYIEIDE-PFKRLFTQ 579
+A + L D Y+ G + R + + P+K + T
Sbjct: 540 YAVLHPRENLKFPALFADFYLEGSDQT-------RGWFYSSLLTSTALFGRAPYKNVLTH 592
Query: 580 GMVVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVI 639
G V+ E +G KMSKS NV+
Sbjct: 593 GFVLDE-----------------------KGR------------------KMSKSLGNVV 611
Query: 640 DPMKVIKSYGADTARLFVLSDSPPDRDIIWSNKGVDSTYQFIQQIWR-----LIYNAKDE 694
DP VI YGAD RL+V S S D+ +S++ + + ++I L +
Sbjct: 612 DPQDVIDKYGADILRLWVAS-SDYWEDLRFSDEILKQVREVYRKIRNTYRFLLGNLDDFD 670
Query: 695 LQTSSTKK------DISLISKSTKFLERIEENYQNLSFNKAVANIHELVNV--------I 740
+ + D ++S+ ++ + E Y+N F+K V + V+ I
Sbjct: 671 PKKDAVLPEELRELDRWILSRLNSLVKEVREAYENYDFHKVVRALMNFVSEDLSNWYLDI 730
Query: 741 SKPLMEIAKKKSNADR--ISTIRYILEKLIIMMSPMIPHLAEECWQLLGNAGL---VAQQ 795
K + S R +T+ +IL+ L+ +++P++P AEE WQ L V +
Sbjct: 731 IKDRLYTEAADSPDRRAAQTTLYHILKALVRLLAPILPFTAEEIWQNLPGERKEESVHLE 790
Query: 796 KWPKLDPILEVNTDII 811
WP++D L +
Sbjct: 791 DWPEVDEELIDVEAAL 806
>gnl|CDD|143905 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L, M and V).
Other tRNA synthetase sub-families are too dissimilar to
be included.
Length = 606
Score = 181 bits (461), Expect = 9e-46
Identities = 148/734 (20%), Positives = 245/734 (33%), Gaps = 207/734 (28%)
Query: 15 WQSAWYDSNIFKA--ENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGY 72
W + FK ENGK K + + + P +G +H+GH N + D+V R+ R G+
Sbjct: 2 IYQFWDEQGYFKKSLENGKGKPSFTIHDGPPNATGLLHIGHALNKTLKDIVIRYKRMQGF 61
Query: 73 SVLHPMGWDAFGMPAEN------AAREHNVHPKM-----------WTYQNIKVMRKQLQS 115
VL GWD G+P E + K+ W + +R Q +
Sbjct: 62 DVLWVPGWDHHGLPTEQKVEKKLGIKGKKDRHKLGREKFREKCREWKMEYADEIRSQFKR 121
Query: 116 IGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQVING 175
+G+S DW +++ T D +F+ +I R VNW P T L
Sbjct: 122 LGVSGDWDREYFTLDPGLEAAVWRVFVRLHDKGLIYRGKKPVNWSPALNTAL-------- 173
Query: 176 RGWRSDAPVEQRSL--PQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEI 233
S+A VE + + P L D
Sbjct: 174 ----SEAEVEYKDVKGPSIHVAF-----PLADGKGA------------------------ 200
Query: 234 RWEIVSNTIDQIEEILVYTTRPETIFGASFIAIAVDHSISEKLSCDNTDI--KEFCDEEK 291
++++TT P T+ G + +A+ + + + I +
Sbjct: 201 -------------SLVIWTTTPWTLPGNTAVAVNPEFNYVKIRVTGEYYILAEALLKSLY 247
Query: 292 QKGTSLSVLDKTEKKGIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIFGCPFADQRD 351
+K + + + G HP IP+ ++V M +GTGA+ P + D
Sbjct: 248 KKKKEDGEILEDFRGKELIGKKYIHPFVNRE-IPIIADDYVDMEFGTGAVHIAPAHGEDD 306
Query: 352 MDFAKKYGLPIIPIMKRSINHSQDIEEGKAFSGDGIMINS-SFLDGMTNTEALQAVMSHL 410
+ K++ L I + DG G+ +A + ++ L
Sbjct: 307 YEVGKRHNLEFINPVDD----------------DGTYNEEAPEFQGLKRFKARKKIVELL 350
Query: 411 EKQN-------------------------------IKNSPIGK------RKINF------ 427
++ ++ + + K+ F
Sbjct: 351 TEKGLLLKIEPIEHSYPHCWRSGTPIIYRATPQWFVRMKNLAEAALKAVEKVQFVPKWGE 410
Query: 428 --------RLRDWCISRQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPL 479
++DWCISRQR WG PIP + + G V + + G
Sbjct: 411 KRYGNWLENIQDWCISRQRWWGHPIPAWYSKDTGEVYVRGSLKELVAGR---EEEEGIEA 467
Query: 480 ENHPTWKKIFCVKCGSEAL-RETDTMDTFVDS-SWYYMRYMTPHAKDPINKELVRQWFPV 537
H K + G+ L ++ D +DT+ S SW + T E +++FP
Sbjct: 468 WLHRDAKDLL--GKGAGTLEQDEDVLDTWFSSGSWP---FSTLGYPFTNTPEF-KRFFPA 521
Query: 538 DQYIGGIEHAVLHLLYARFFAHILKKIG-YIEIDEPFKRLFTQGMVVHETYYQLEGIKKK 596
D + G + R + + + +G + P+K + G+V E +G
Sbjct: 522 DMLLEGSDQ-------TRGWFYRMIVLGTALTGSAPYKNVLVHGLVRDE-----QG---- 565
Query: 597 YLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLF 656
KMSKS NVIDP+ VI YGAD RL+
Sbjct: 566 --------------------------------RKMSKSLGNVIDPLDVIDKYGADALRLW 593
Query: 657 VLSDSPPDRDIIWS 670
+ S S RDI +S
Sbjct: 594 LAS-SDYGRDINFS 606
>gnl|CDD|35654 KOG0433, KOG0433, KOG0433, Isoleucyl-tRNA synthetase [Translation,
ribosomal structure and biogenesis].
Length = 937
Score = 178 bits (452), Expect = 6e-45
Identities = 180/885 (20%), Positives = 302/885 (34%), Gaps = 202/885 (22%)
Query: 19 WYDSNIFKAENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPM 78
I ++ ++ F L+ +GN+H+GH N ++ D++ R + A G S L+
Sbjct: 43 IQPPEILSSQLSDQQRVEFELKDA---NGNLHLGHALNKILKDIINRILLAQGKSALYVP 99
Query: 79 GWDAFGMPAE-------NAAREHNVHP-------KMWTYQNIKVMRKQLQSIGLSIDWSK 124
GWD G+P E E + P +++ + IK + + G++ DW
Sbjct: 100 GWDCHGLPIESTKALSSLTESEGSRTPLEIRAKARIFADEAIKKQMEAFRRWGVTADWEN 159
Query: 125 DFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQVINGRGWRSDAPV 184
+ T Y Q +F + ++ R V W P +T LA ++ +
Sbjct: 160 PYVTKSPSYEAAQLDIFAKLYEKGLVYRSFKPVYWSPSSRTALAESEL--------EYND 211
Query: 185 EQRSLPQWF-FKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIRWEIVSNTID 243
+S +F FK+ + S + I
Sbjct: 212 NHQSTSAYFRFKLINFSSSAH--------------------------------SEDSKIP 239
Query: 244 QIEEILVYTTRPETIFGASFIAIAVDHSISEKL-SCDNTDIKEFC--------DEEKQKG 294
QI LV+TT P T+ S AI+V+ +I L DN F + EK
Sbjct: 240 QIY-ALVWTTTPWTL--PSNNAISVNSAIQYSLVQFDNNPTSTFYLVASKLLEEFEKSSD 296
Query: 295 TSLSVLDKTEKKGIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIFGCPFADQRDMDF 354
++ T K G KHPL+ + +P+ V GTG + P D
Sbjct: 297 RKCKIV-GTVKGANLIGRRYKHPLHNELGLPILEGPHVTDTVGTGLVHTAPAHGFEDYLV 355
Query: 355 AKKYGLPIIPIMK---RSINHSQDIEEGKAFSGDGIMINSSFLDGM-------------- 397
A GL + + + +GK G+G I L+
Sbjct: 356 AISKGLRVESFVDSRGCYTREAGHDLDGKEVLGEGQKIVLRLLNHDIVHVSKYVHSYPYD 415
Query: 398 ----------------TNTEALQ-AVMSHLEKQNI--KNSPIGKRKINFRLRDWCISRQR 438
+ E ++ L+ + +S + +++ WCISRQR
Sbjct: 416 WRTKKPVIIRASEQWFIDVEEIKKRASMALDDVKVAPGDSDLRLKQLVTTRPSWCISRQR 475
Query: 439 SWGCPIPVIHCQKCGIVELPKEDLPVQLP----EDLDFTLPGNPLENHPTWKKIFCVKCG 494
WG PIP ++ + G E D + E P +
Sbjct: 476 VWGVPIPALYDKNGGSYLSNSLIEWHAKLTREQEGSDVWWEIDVEELLPEEEVREIPDIA 535
Query: 495 SEALRETDTMDTFVDS--SWYYMRYMTPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLL 552
SE + TD MD + DS SW + + ++ D Y+ G++
Sbjct: 536 SEYKKGTDIMDVWFDSGSSWSAVL---DNEREH----------VADVYLEGVDQ-----F 577
Query: 553 YARFFAHILKKIGYIEIDEPFKRLFTQGMVVHETYYQLEGIKKKYLKPDEVILRNIEGEN 612
F + +L + P+K++ G + E
Sbjct: 578 RGWFQSSLLTSVAVQNK-APYKKVIVHGFTLDENGN------------------------ 612
Query: 613 CAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIK------SYGADTARLFVLSDSPPDRD 666
KMSKS NV+DP V +YGAD R +V + S +
Sbjct: 613 -----------------KMSKSLGNVVDPTMVTDGSLKQPAYGADGLRFWV-AGSENTGE 654
Query: 667 IIWSNK---GVDSTYQFIQQIWRLIYNAKDELQTSSTK--------KDISLISKSTKFLE 715
K VD + +R + + K D ++ + ++
Sbjct: 655 SKIGPKILDQVDEKLIKFRNTFRFLLGNLQDFDGKQVKFPLKDLRYIDQYMLQQLDAIVK 714
Query: 716 RIEENYQNLSFNKAVANIHELVNV-ISKPLMEIAKKKSNADRIS---------TIRYILE 765
RI E Y + F K V ++ + + +S +I K + D++ T+ ++L
Sbjct: 715 RIIELYNDYKFRKVVNDLQQFLQRNLSAFYFDIVKDRLYCDKVGSESRRSAQTTLHHLLH 774
Query: 766 KLIIMMSPMIPHLAEECWQLL-GNAGLVAQQKWPKLDPILEVNTD 809
L ++SP++PHLAEE WQ L G+ + + KW L L D
Sbjct: 775 NLAHIISPILPHLAEEVWQHLPGSHEKIFRLKWEDLHSGLLTPHD 819
>gnl|CDD|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA
synthetases. Valine amino-acyl tRNA synthetase (ValRS)
catalytic core domain. This enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. ValRS has an
insertion in the core domain, which is subject to both
deletions and rearrangements. This editing region
hydrolyzes mischarged cognate tRNAs and thus prevents
the incorporation of chemically similar amino acids.
Length = 382
Score = 140 bits (355), Expect = 1e-33
Identities = 57/201 (28%), Positives = 103/201 (51%), Gaps = 22/201 (10%)
Query: 43 PYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAA-REHNVHPKM- 100
P +G++HMGH N I D++AR+ R GY+VL P G D G+ + ++ + K
Sbjct: 10 PNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTR 69
Query: 101 --------------WTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMK 146
W ++ +R+QL+ +G S+DWS+++ T D Q F+ +
Sbjct: 70 HDLGREEFLEKCWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYE 129
Query: 147 HNVIVRKTAQVNWDPVEQTVLANEQVINGRGWRSDAPVEQRSLPQWFFKISDLSQELLDS 206
+I R VNW P +T +++ +V RS +E PQWF K+ DL+++ L++
Sbjct: 130 KGLIYRDNRLVNWCPKLRTAISDIEV----CSRSGDVIEPLLKPQWFVKVKDLAKKALEA 185
Query: 207 IETLS-EW-PEKVKIMQKNWI 225
++ ++ PE+++ +NW+
Sbjct: 186 VKEGDIKFVPERMEKRYENWL 206
Score = 98.9 bits (247), Expect = 6e-21
Identities = 65/246 (26%), Positives = 96/246 (39%), Gaps = 77/246 (31%)
Query: 429 LRDWCISRQRSWGCPIPVIHCQKCG-IVELPKEDLPVQLPEDLDFTLPGNPLENHPTWKK 487
+RDWCISRQ WG IP +C+ G V +ED +
Sbjct: 209 IRDWCISRQLWWGHRIPAWYCKDGGHWVVAREEDEAIDKAAPE----------------- 251
Query: 488 IFCVKCGSEAL-RETDTMDTFVDSSWYYMRYMTPHA--KDPINKELVRQWFPVDQYIGGI 544
CV CG E L ++ D +DT+ SS + P + P + +++++P + G
Sbjct: 252 -ACVPCGGEELKQDEDVLDTWFSSS------LWPFSTLGWPEETKDLKKFYPTSLLVTG- 303
Query: 545 EHAVLHLLYARFFAHILKKIGYIEIDE-PFKRLFTQGMVVHETYYQLEGIKKKYLKPDEV 603
H ++ AR I++ G + PFK ++ G+V
Sbjct: 304 -HDIIFFWVARM---IMR--GLKLTGKLPFKEVYLHGLV--------------------- 336
Query: 604 ILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPP 663
R+ +G KMSKS NVIDP+ VI YGAD R + S +
Sbjct: 337 --RDEDG------------------RKMSKSLGNVIDPLDVIDGYGADALRFTLASAATQ 376
Query: 664 DRDIIW 669
RDI
Sbjct: 377 GRDINL 382
>gnl|CDD|35653 KOG0432, KOG0432, KOG0432, Valyl-tRNA synthetase [Translation,
ribosomal structure and biogenesis].
Length = 995
Score = 139 bits (351), Expect = 3e-33
Identities = 181/888 (20%), Positives = 303/888 (34%), Gaps = 226/888 (25%)
Query: 2 ETRSYSPQETDSIWQSAWYDSNIFKAENGKNKKKYFVLEMFPYP--SGNIHMGHLRNYVI 59
+YSP +S W W FK E G N FV+ + P P +G++H+GH I
Sbjct: 42 LPAAYSPAYVESAWYKWWEKQGFFKPEYGPNPGGVFVIPL-PPPNVTGSLHIGHALTVAI 100
Query: 60 GDVVARFMRASGYSVLHPMGWDAFGMP----------AENAAREHNVH-----PKMWTYQ 104
D +AR+ R GY VL G D G+ E H++ ++W ++
Sbjct: 101 QDALARYNRMHGYQVLWVPGTDHAGIATQVVVEKQLAREGGKTRHDLGREEFLKEVWEWK 160
Query: 105 NIK--VMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPV 162
+ QL+ +G S+DW ++ T D F+ + +I R VNW P
Sbjct: 161 EEYGGRIYNQLKRLGASLDWDREAFTMDPKLSRAVTEAFVRLHEEGLIYRANRLVNWCPA 220
Query: 163 EQTVLANEQVINGRGWRSDAPVEQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQK 222
++ + SD VE +P ++ ++ + KV+
Sbjct: 221 LRSAI------------SDIEVESVEIPG-------------RTLLSVPGYDTKVEFGVL 255
Query: 223 NWIGRSEGMEIRWEIVSNTIDQIEEILVYTTRPETIFGASFIAIAVDHSISEKLSCDNTD 282
EEI+V TTRPETI G +A+ D + L
Sbjct: 256 Y------------SFAYPVEGSDEEIVVATTRPETILGDVAVAVHPDDDRYKHLH----- 298
Query: 283 IKEFCDEEKQKGTSLSVLDKTEKKGIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIF 342
G VKHP +P+ V M +GTGA+
Sbjct: 299 ----------------------------GKFVKHPFTGR-KLPIICDIAVDMEFGTGAVK 329
Query: 343 GCPFADQRDMDFAKKYGLPIIPIMKRSINHSQDIEEGKAFSGDGIMIN-SSFLDGMTNTE 401
P D D + K++ L I I + DG++ N GM E
Sbjct: 330 ITPAHDPNDYEVGKRHNLEFINIF----------------TDDGLLNNVCGEFKGMKRFE 373
Query: 402 ALQAVMSHLEKQN-------------------------------IKNSPIGKRKI----N 426
A + V+ L++ + + K+ + +
Sbjct: 374 AREKVVEKLKELGLYVGKENHPMVLPICSRSGDVIEPLLKPQWFVSCKEMAKKALKAVES 433
Query: 427 FRL------------------RDWCISRQRSWGCPIPVIHC--------QKCGIVELPKE 460
+L RDWCISRQ WG IP + +V +E
Sbjct: 434 GKLEILPEFHEKEWYRWLENIRDWCISRQLWWGHRIPAYFVNLSDGRAEEDYWVVARSEE 493
Query: 461 DLPVQLPEDLDFTLPGNPLENHPTWKKIFCVKCGSEALRETDTMDTFVDSS-WYYMRYMT 519
+ + + PG ++ D +DT+ S W +
Sbjct: 494 E---AREKAAEKFGPGKEFTLE----------------QDPDVLDTWFSSGLWPFSTLGW 534
Query: 520 PHA-KDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIGYIEIDEPFKRLFT 578
P KD N ++P+ G H +L AR LK G + PFK +
Sbjct: 535 PEETKDFKN------FYPLSLLETG--HDILFFWVARMVMLGLKLTGEL----PFKEVLL 582
Query: 579 QGMVVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNV 638
G+V ++ + P +VI I E +L + + P E K
Sbjct: 583 HGLVRDAHGRKMSKSLGNVIDPLDVI-DGISLEKLHAKLLSGN---LDPREVEKAKKGQK 638
Query: 639 IDPMKVIKSYGADTARLFVLSDSPPDRDIIWSNKGVDSTYQFIQQIWRL----------- 687
D I G D R + S + RDI V+ F ++W
Sbjct: 639 KDFPNGIPECGTDALRFALCSYTTQGRDINLDVLRVEGYRHFCNKLWNATRFALQRLGEN 698
Query: 688 -IYNAKDELQTSSTKKDISLISKSTKFLERIEENYQNLSFNKAVANIH-----ELVNV-- 739
+ + ++L + + D ++S+ + +E + E+ + +F+ A + ++ +L +V
Sbjct: 699 FVPSPTEDLSGNESLVDEWILSRLAEAVEEVNESLEARNFHLATSALYAFWLYDLCDVYL 758
Query: 740 -ISKPLMEIAKKKSNADRISTIRYILEKLIIMMSPMIPHLAEECWQLL 786
+KPL+ + + + L+ + ++ P +P + EE WQ L
Sbjct: 759 EATKPLLWGDSEALAYEARRVLYRCLDNGLRLLHPFMPFITEELWQRL 806
>gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of
isoleucyl, leucyl, valyl and methioninyl tRNA
synthetases. Catalytic core domain of isoleucyl,
leucyl, valyl and methioninyl tRNA synthetases. These
class I enzymes are all monomers. However, in some
species, MetRS functions as a homodimer, as a result of
an additional C-terminal domain. These enzymes
aminoacylate the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. Enzymes in
this subfamily share an insertion in the core domain,
which is subject to both deletions and rearrangements.
This editing region hydrolyzes mischarged cognate tRNAs
and thus prevents the incorporation of chemically
similar amino acids. MetRS has a significantly shorter
insertion, which lacks the editing function.
Length = 312
Score = 108 bits (271), Expect = 7e-24
Identities = 49/204 (24%), Positives = 82/204 (40%), Gaps = 42/204 (20%)
Query: 35 KYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAR-- 92
K++V PY +G++H+GH ++I D +AR+ R GY V GWD G+P E A
Sbjct: 1 KFYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERK 60
Query: 93 -----------EHNVHPKMWTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLF 141
E PK + + ++ + +G+S DWS ++ T + +Y +L+F
Sbjct: 61 GGRKKKTIWIEEFREDPKEFVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIF 120
Query: 142 LDFMKHNVIVRKTAQVNWDPVEQTVLANEQVINGRGWRSDAPVEQRSLPQWFFKISDLSQ 201
+ +I R R QWFF + +
Sbjct: 121 SRLYEKGLIYR-----------------------------GTHPVRITEQWFFDMPKFKE 151
Query: 202 ELLDSIETLSEWPEKVKIMQKNWI 225
+LL ++ PE VK + W+
Sbjct: 152 KLLKALRRGKIVPEHVKNRMEAWL 175
Score = 61.7 bits (150), Expect = 8e-10
Identities = 41/169 (24%), Positives = 58/169 (34%), Gaps = 51/169 (30%)
Query: 501 TDTMDTFVDSSWYYMRYMTPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHI 560
D D + DS + + P KE + +P D ++ G + F
Sbjct: 195 EDVFDVWFDSGIGPLGSL----GYPEEKEWFKDSYPADWHLIGKDILRGWA----NFWIT 246
Query: 561 LKKIGYIEIDEPFKRLFTQGMVVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDN 620
+ + EI P K L G V+ E G+
Sbjct: 247 MLVALFGEI--PPKNLLVHGFVLDE-----------------------GGQ--------- 272
Query: 621 SKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDIIW 669
KMSKSK NVIDP V++ YGAD R ++ S +P DI
Sbjct: 273 ---------KMSKSKGNVIDPSDVVEKYGADALRYYLTSLAPYGDDIRL 312
Score = 32.0 bits (73), Expect = 0.71
Identities = 12/17 (70%), Positives = 13/17 (76%)
Query: 429 LRDWCISRQRSWGCPIP 445
L DW ISRQR WG P+P
Sbjct: 178 LLDWAISRQRYWGTPLP 194
>gnl|CDD|153412 cd07958, Anticodon_Ia_Leu_BEm, Anticodon-binding domain of
bacterial and eukaryotic mitochondrial leucyl tRNA
synthetases. This domain is found in leucyl tRNA
synthetases (LeuRS), which belong to the class Ia
aminoacyl tRNA synthetases. It lies C-terminal to the
catalytic core domain. In contrast to other class Ia
enzymes, the anticodon is not used as an identity
element in LeuRS (with exceptions such as Saccharomyces
cerevisiae and some other eukaryotes). No
anticodon-binding site can be defined for this family,
which includes bacterial and eukaryotic mitochondrial
members, as well as LeuRS from the archaeal
Halobacteria. LeuRS catalyzes the transfer of leucine to
the 3'-end of its tRNA.
Length = 117
Score = 105 bits (265), Expect = 5e-23
Identities = 40/126 (31%), Positives = 67/126 (53%), Gaps = 17/126 (13%)
Query: 669 WSNKGVDSTYQFIQQIWRLIYNAKDELQTSSTKKDISLISKSTKFLER--------IEEN 720
WS+ GV+ Y+F+ ++WRL+ + L + ++S + K L R + E+
Sbjct: 1 WSDSGVEGAYRFLNRVWRLVTELAEALAAPAAAAELS---EEDKELRRKLHKTIKKVTED 57
Query: 721 YQNLSFNKAVANIHELVNVISKPLMEIAKKKSNADRISTIRYILEKLIIMMSPMIPHLAE 780
+ L FN A+A + ELVN + K KKK + +R LE L+++++P PH+AE
Sbjct: 58 IERLRFNTAIAALMELVNALYK-----YKKKDAQHA-AVLREALETLVLLLAPFAPHIAE 111
Query: 781 ECWQLL 786
E W+ L
Sbjct: 112 ELWEEL 117
>gnl|CDD|30492 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 558
Score = 101 bits (253), Expect = 8e-22
Identities = 53/227 (23%), Positives = 89/227 (39%), Gaps = 35/227 (15%)
Query: 31 KNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENA 90
K KK V PYP+G H+GHL Y+ DV AR++R GY V G D G E
Sbjct: 2 KMMKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELK 61
Query: 91 AREHNVHPKMWTYQNIKVMRKQLQSIGLSIDWSKDFA-TCDVDYYHCQQLLFLDFMKHNV 149
A + + P+ +N + ++ +++ +S D +F T ++ Q FL ++
Sbjct: 62 AEKEGITPQELVDKNHEEFKELFKALNISFD---NFIRTTSPEHKELVQEFFLKLYENGD 118
Query: 150 IVRKTAQVNWDPVEQTVLANEQV-----------------------------INGRGWRS 180
I + + + + L + V IN S
Sbjct: 119 IYLREYEGLYCVSCERFLPDRYVEGTCPKCGGEDARGDQCENCGRTLDPTELINPVCVIS 178
Query: 181 DAPVEQRSLPQWFFKISDLSQELLDSIETLSE--WPEKVKIMQKNWI 225
A E R +FF++S +LL+ E+ + WP + N++
Sbjct: 179 GATPEVREEEHYFFRLSKFQDKLLEWYESNPDFIWPANRRNEVLNFL 225
Score = 80.7 bits (199), Expect = 2e-15
Identities = 45/203 (22%), Positives = 82/203 (40%), Gaps = 21/203 (10%)
Query: 629 EKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDIIWSNKGVDSTYQ--------- 679
+KMSKS+ NV+DP ++++ YG D R ++ + P D +S +
Sbjct: 332 QKMSKSRGNVVDPDELLEQYGVDALRYYLARELPEGSDGDFSWEDFVERVNADLANKLGN 391
Query: 680 FIQQIWRLIYNAKD----ELQTSSTKKDISLISKSTKFLERIEENYQNLSFNKAVANIHE 735
+ I D ++D L++ + + LE + E + F KA+ I
Sbjct: 392 LANRTLGFINKYFDGVVPAAGAPDLEEDEELLALAREALEAVAEAMEKYEFRKALEEIMA 451
Query: 736 LVNVISKPLME----IAKKKSNADRISTIRY----ILEKLIIMMSPMIPHLAEECWQLLG 787
L + +K + E K+ +R++T+ Y ++ L I++ P +P AE+ W LG
Sbjct: 452 LASRANKYIDEQAPWKLAKEDKRERLATVLYLALELVRVLAILLYPFMPETAEKIWDQLG 511
Query: 788 NAGLVAQQKWPKLDPILEVNTDI 810
W L +
Sbjct: 512 LEEDARNFTWLGARQPLLPGHKL 534
Score = 32.6 bits (74), Expect = 0.52
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 6/47 (12%)
Query: 405 AVMSHLEKQNIKNSPIGKRK--INFR---LRDWCISRQR-SWGCPIP 445
++ E P +R +NF L+D I+R WG P+P
Sbjct: 200 KLLEWYESNPDFIWPANRRNEVLNFLKEGLKDLSITRTDLDWGIPVP 246
>gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA
synthetases. Methionine tRNA synthetase (MetRS)
catalytic core domain. This class I enzyme aminoacylates
the 2'-OH of the nucleotide at the 3' of the appropriate
tRNA. MetRS, which consists of the core domain and an
anti-codon binding domain, functions as a monomer.
However, in some species the anti-codon binding domain
is followed by an EMAP domain. In this case, MetRS
functions as a homodimer. The core domain is based on
the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding. As a result of a deletion event, MetRS has a
significantly shorter core domain insertion than IleRS,
ValRS, and LeuR. Consequently, the MetRS insertion
lacks the editing function.
Length = 319
Score = 88.7 bits (221), Expect = 6e-18
Identities = 46/194 (23%), Positives = 73/194 (37%), Gaps = 22/194 (11%)
Query: 35 KYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREH 94
K + PY +G H+GHL V+ DV AR+ R GY VL G D G E A E
Sbjct: 1 KVLITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEE 60
Query: 95 NVHPKMWTYQNIKVMRKQLQSIGLSIDWSKDFA-TCDVDYYHCQQLLFLDFMKHNVIVRK 153
V P+ + ++ + + + +S D F T + Q F ++ I
Sbjct: 61 GVTPQELCDKYHEIFKDLFKWLNISFD---YFIRTTSPRHKEIVQEFFKKLYENGYIYEG 117
Query: 154 TAQVNWDPVEQTVLANEQVINGRGWRSDAPVEQRSLPQWFFKISDLSQELLDSIET--LS 211
+ + + L E R +FF++S LL+ +E
Sbjct: 118 EYEGLYCVSCERFLP----------------EWREEEHYFFRLSKFQDRLLEWLEKNPDF 161
Query: 212 EWPEKVKIMQKNWI 225
WPE + +W+
Sbjct: 162 IWPENARNEVLSWL 175
Score = 49.8 bits (120), Expect = 3e-06
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 629 EKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRD 666
+KMSKS+ NV+DP +++ YGAD R ++L + P +D
Sbjct: 279 KKMSKSRGNVVDPDDLLERYGADALRYYLLRERPEGKD 316
Score = 32.5 bits (75), Expect = 0.49
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 6/47 (12%)
Query: 405 AVMSHLEKQNIKNSPIGKRKI---NFR--LRDWCISRQRS-WGCPIP 445
++ LEK P R + L+D I+R WG P+P
Sbjct: 150 RLLEWLEKNPDFIWPENARNEVLSWLKEGLKDLSITRDLFDWGIPVP 196
>gnl|CDD|173909 cd00818, IleRS_core, catalytic core domain of isoleucyl-tRNA
synthetases. Isoleucine amino-acyl tRNA synthetases
(IleRS) catalytic core domain . This class I enzyme is a
monomer which aminoacylates the 2'-OH of the nucleotide
at the 3' of the appropriate tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding. IleRS has an insertion in the core domain,
which is subject to both deletions and rearrangements.
This editing region hydrolyzes mischarged cognate tRNAs
and thus prevents the incorporation of chemically
similar amino acids.
Length = 338
Score = 87.7 bits (218), Expect = 1e-17
Identities = 47/217 (21%), Positives = 79/217 (36%), Gaps = 56/217 (25%)
Query: 34 KKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAE----- 88
++ + PY +G H GH N ++ D++ R+ GY V GWD G+P E
Sbjct: 1 PEFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEK 60
Query: 89 -------------------NAAREHNVHPKMWTYQNIKVMRKQLQSIGLSIDWSKDFATC 129
RE + + +Q Q +G+ +DW + T
Sbjct: 61 ELGISGKKDIEKMGIAEFNAKCREF-------ALRYVDEQEEQFQRLGVWVDWENPYKTM 113
Query: 130 DVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQVINGRGWRSDAPVEQRSL 189
D +Y +F + ++ R V W P+ R+
Sbjct: 114 DPEYMESVWWVFKQLHEKGLLYRGYKVVPW-----------------------PLIYRAT 150
Query: 190 PQWFFKISDLSQELLDSIETLSEW-PEKVKIMQKNWI 225
PQWF +++ + LL++ + W PE VK NW+
Sbjct: 151 PQWFIRVTKIKDRLLEANDK-VNWIPEWVKNRFGNWL 186
Score = 86.5 bits (215), Expect = 3e-17
Identities = 62/273 (22%), Positives = 85/273 (31%), Gaps = 107/273 (39%)
Query: 404 QAVMSHLEKQNIKNSPIGKRKINF--RLRDWCISRQRSWGCPIPVIHCQKCGIVELPKED 461
++ +K N + R N+ RDWCISRQR WG PIPV +C+ CG
Sbjct: 162 DRLLEANDKVNWIPEWVKNRFGNWLENRRDWCISRQRYWGTPIPVWYCEDCG-------- 213
Query: 462 LPVQLPEDLDFTLPGNPLENHPTWKKIFCVKCGSEALRETDTMDTFVDS--SWYYMRYMT 519
++ R D +D + DS Y
Sbjct: 214 -------------------------EVLVR-------RVPDVLDVWFDSGSMPYAQ---- 237
Query: 520 PHAKDPINKELVRQWFPVDQYIGGIEHA-----VLHLLYARFFAHILKKIGYIEIDEPFK 574
P E + FP D + G + L LL F P+K
Sbjct: 238 --LHYPFENEDFEELFPADFILEGSDQTRGWFYSLLLLSTALFGKA-----------PYK 284
Query: 575 RLFTQGMVVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKS 634
+ G V+ E +G KMSKS
Sbjct: 285 NVIVHGFVLDE-----------------------DGR------------------KMSKS 303
Query: 635 KKNVIDPMKVIKSYGADTARLFVLSDSPPDRDI 667
N +DP +V+ YGAD RL+V S D+
Sbjct: 304 LGNYVDPQEVVDKYGADALRLWVASSDVYAEDL 336
>gnl|CDD|35658 KOG0437, KOG0437, KOG0437, Leucyl-tRNA synthetase [Translation,
ribosomal structure and biogenesis].
Length = 1080
Score = 62.0 bits (150), Expect = 6e-10
Identities = 45/185 (24%), Positives = 82/185 (44%), Gaps = 12/185 (6%)
Query: 629 EKMSKSKKNVIDPMKVIKSYGADTAR--LFVLSDSPPDRDIIWS--NKGVDSTYQFIQQI 684
EKMSKS N + + I+ +GAD R L D D + + + N + Y +++ I
Sbjct: 709 EKMSKSTGNFMTLEQAIEKFGADGTRLALADAGDGVEDANFVEANANAAILRLYTYVEWI 768
Query: 685 WRLIYNAKDELQT--SSTKKDISLISKSTKFLERIEENYQNLSFNKAVAN-IHELVNVIS 741
+ N + L+T +ST D ++ + + E Y++ F A+ ++L
Sbjct: 769 EEMCEN-RSSLRTGPASTFADRVFENEMNALIAKTERAYEDTLFKDALKYGFYDLQAARD 827
Query: 742 KPLMEIAKKKSNADRISTIRYILEKLIIMMSPMIPHLAEECWQLLGNAGLVAQQKWPKLD 801
E+ + + D + R+I E ++++P+ PHLAE W+ + WP +
Sbjct: 828 M-YRELCGEGMHRDLV--FRFI-ETQTLLLAPICPHLAEYIWRTVLKKNFSVNVGWPFVS 883
Query: 802 PILEV 806
P E
Sbjct: 884 PPDEK 888
Score = 53.9 bits (129), Expect = 2e-07
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Query: 3 TRSYSPQETDSIWQSAWYDSNIFKA----ENGKNKKKYFVLEMFPYPSGNIHMGHLRNYV 58
R S E + +Q W +F+ E K+K K+FV +PY +G +H+GH +
Sbjct: 9 ARRDSLLEIEKKYQKKWDTEKVFEVDAPNELQKSKPKFFVTFPYPYMNGRLHLGHAFSLS 68
Query: 59 IGDVVARFMRASGYSVLHPMGWDAFGMP----AENAARE 93
+ + + R G +VL P G+ GMP A+ RE
Sbjct: 69 KVEFASGYERLQGKNVLFPFGFHCTGMPIKASADKLKRE 107
Score = 31.1 bits (70), Expect = 1.3
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 98 PKMWTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYH 135
PK W Y + + L+ GL IDW + F T DV+ Y+
Sbjct: 177 PKHWLYYFPPLCERDLKRFGLGIDWRRSFITTDVNPYY 214
>gnl|CDD|153414 cd07960, Anticodon_Ia_Ile_BEm, Anticodon-binding domain of
bacterial and eukaryotic mitochondrial isoleucyl tRNA
synthetases. This domain is found in isoleucyl tRNA
synthetases (IleRS), which belong to the class Ia
aminoacyl tRNA synthetases. It lies C-terminal to the
catalytic core domain, and recognizes and specifically
binds to the tRNA anticodon. This family includes
bacterial and eukaryotic mitochondrial members. IleRS
catalyzes the transfer of isoleucine to the 3'-end of
its tRNA.
Length = 180
Score = 61.4 bits (150), Expect = 1e-09
Identities = 25/111 (22%), Positives = 51/111 (45%), Gaps = 13/111 (11%)
Query: 707 ISKSTKFLERIEENYQNLSFNKAVANIHELVNVISKPL-MEIAK------KKSNADRIS- 758
+ + + ++ + E Y+N F+K ++ V ++I K K + +R S
Sbjct: 50 LHRLNELIKEVREAYENYEFHKVYQALNNFCTVDLSAFYLDIIKDRLYCDAKDSLERRSA 109
Query: 759 --TIRYILEKLIIMMSPMIPHLAEECWQLLGNAGL---VAQQKWPKLDPIL 804
+ +IL+ L+ +++P++P AEE W+ L V + WP+L
Sbjct: 110 QTVLYHILDALLKLLAPILPFTAEEVWEHLPGEKKEESVFLEDWPELPEEW 160
>gnl|CDD|35655 KOG0434, KOG0434, KOG0434, Isoleucyl-tRNA synthetase [Translation,
ribosomal structure and biogenesis].
Length = 1070
Score = 53.8 bits (129), Expect = 2e-07
Identities = 87/408 (21%), Positives = 143/408 (35%), Gaps = 123/408 (30%)
Query: 430 RDWCISRQRSWGCPIPV--------IHCQKCGIVELPKEDLPVQLPEDL------DFTLP 475
RDW ISR R WG PIP+ + C I EL E+L DL T+P
Sbjct: 454 RDWNISRNRYWGTPIPLWVSDDYEEVVCIG-SIKEL--EELSGVKITDLHRESIDHITIP 510
Query: 476 GNPLENHPTWKKIFCVKCGSEALRE-TDTMDTFVDSSWYYMRYMTPHAKDPI-NKELVRQ 533
K G L ++ D + +S M Y H P NKE +
Sbjct: 511 S---------------KKGKGVLHRVSEVFDCWFESG--SMPYAQRHY--PFENKEEFEE 551
Query: 534 WFPVDQYIGGIEHA-----VLHLLYARFFAHILKKIGYIEIDEPFKRLFTQGMVVHETYY 588
FP D G++ L +L F PFK + G+V+ E
Sbjct: 552 NFPADFIAEGLDQTRGWFYTLLVLSTALFGKP-----------PFKNVIVNGLVLAE--- 597
Query: 589 QLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSY 648
+G+ KMSK KN DP +I Y
Sbjct: 598 --------------------DGK------------------KMSKRLKNYPDPSLIINKY 619
Query: 649 GADTARLFVLSDSPPDR--DIIWSNKGVD-----------STYQF-IQQIWRL-----IY 689
GAD RL++++ SP R ++ + +GV ++Y+F +Q L
Sbjct: 620 GADALRLYLIN-SPVVRAENLKFKEEGVREVVKDVLLPWYNSYRFLVQNAALLKKETGKD 678
Query: 690 NAKDELQTSSTKKDISLISKSTKFLERIEENYQNLSFNKAVANIHELVNVISKPLMEIAK 749
D+ TSS D +++ + + + E V + + ++ ++ + +
Sbjct: 679 FVFDDSVTSSNVMDRWILASTQSLVGFVREEMDQYRLYTVVPRLLKFIDELTNWYIRFNR 738
Query: 750 KKSNADR--------ISTIRYILEKLIIMMSPMIPHLAEECWQLLGNA 789
++ + ++ + +L L+ +M+P P E +Q L
Sbjct: 739 RRLKGENGEHDCHNALNVLFEVLFTLVRVMAPFTPFFTEYIYQNLKKY 786
Score = 52.3 bits (125), Expect = 6e-07
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 8 PQETDSIWQSAWYDSNIFKA--ENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVAR 65
P+E + + + W + + F + K + K+ + P+ +G H GH+ I D+V R
Sbjct: 11 PKEEEKVLE-FWREIDAFHTSLKLSKGRPKFTFYDGPPFATGLPHYGHILASTIKDIVTR 69
Query: 66 FMRASGYSVLHPMGWDAFGMPAEN 89
+ +G+ V GWD G+P E
Sbjct: 70 YATQTGHHVERRFGWDTHGLPVEY 93
Score = 43.0 bits (101), Expect = 3e-04
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 178 WRSDAPVEQRSLPQWFFKISDLSQELLDSIETLSEW-PEKVKIMQ-KNWI 225
WRSD P+ R++P WF ++ ++ +LL + + W P+ +K + NW+
Sbjct: 402 WRSDTPLIYRAVPSWFVRVKNIVDQLLRNNM-KTHWVPQNIKEKRFANWL 450
>gnl|CDD|30564 COG0215, CysS, Cysteinyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 464
Score = 52.9 bits (127), Expect = 3e-07
Identities = 32/155 (20%), Positives = 67/155 (43%), Gaps = 8/155 (5%)
Query: 629 EKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDIIWSNKGVDSTYQFIQQIWRLI 688
EKMSKS N I ++K Y + RLF+LS S + +S + ++ + +++++ +
Sbjct: 267 EKMSKSLGNFITVRDLLKKYDPEVLRLFLLS-SHYRSPLDFSEELLEEAKKALERLYNAL 325
Query: 689 YNAKDELQTSSTKKDISLISKSTKFLERIEENYQNLSFNKAVANIHELVNVISKPLMEIA 748
+D + + +F E +++ + + KA+A + EL I++ L E
Sbjct: 326 RRLRDLAGDAELADLKEFEA---RFREALDD---DFNTPKALAVLFELAKEINRLLEEGK 379
Query: 749 KKKSN-ADRISTIRYILEKLIIMMSPMIPHLAEEC 782
+ + IL ++ + P +E
Sbjct: 380 SDAKAVLSALKALLAILGLKVLGLFPQSGAQEDES 414
Score = 43.3 bits (102), Expect = 3e-04
Identities = 19/76 (25%), Positives = 33/76 (43%)
Query: 43 PYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWT 102
P H+GH R YV+ DV+ R++R GY V + N ARE + +
Sbjct: 30 PTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDIDDKIINRAREEGLSIREVA 89
Query: 103 YQNIKVMRKQLQSIGL 118
+ I + + ++ +
Sbjct: 90 ERYIAAFFEDMDALNV 105
>gnl|CDD|153416 cd07962, Anticodon_Ia_Val, Anticodon-binding domain of valyl tRNA
synthetases. This domain is found in valyl tRNA
synthetases (ValRS), which belong to the class Ia
aminoacyl tRNA synthetases. It lies C-terminal to the
catalytic core domain, and recognizes and specifically
binds to the tRNA anticodon. ValRS catalyzes the
transfer of valine to the 3'-end of its tRNA.
Length = 135
Score = 51.4 bits (124), Expect = 9e-07
Identities = 27/127 (21%), Positives = 55/127 (43%), Gaps = 23/127 (18%)
Query: 680 FIQQIW---RLI------YNAKDELQTSSTKKDISLISKSTKFLERIEENYQNLSFNKAV 730
F ++W R + + +E S + D ++S+ K +E + E +N F++A
Sbjct: 12 FCNKLWNAARFVLMNLEDDDEPEEDPESLSLADRWILSRLNKTVEEVTEALENYRFSEAA 71
Query: 731 ANIHELV-NV-------ISKPLMEIAKKKSNADRISTIR---YILEKLIIMMSPMIPHLA 779
++E N + KP + ++ + Y+LE ++ ++ P +P +
Sbjct: 72 TALYEFFWNDFCDWYLELVKP---RLYGEDEEEKKAARATLYYVLETILRLLHPFMPFIT 128
Query: 780 EECWQLL 786
EE WQ L
Sbjct: 129 EELWQRL 135
>gnl|CDD|35657 KOG0436, KOG0436, KOG0436, Methionyl-tRNA synthetase [Translation,
ribosomal structure and biogenesis].
Length = 578
Score = 50.4 bits (120), Expect = 2e-06
Identities = 40/186 (21%), Positives = 67/186 (36%), Gaps = 31/186 (16%)
Query: 630 KMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDIIWSNKGVDSTYQFIQQIWR--- 686
KMSKS NV+DP ++++ YG D R F+L + D + + + +
Sbjct: 344 KMSKSLGNVVDPFELVQKYGVDAVRYFLLREGELGND---GDYSEEKLIKIVNAHLANTL 400
Query: 687 ------------LIYNAKDELQTSSTK---KDISLISKSTKFLERIEENYQNLSFNKAVA 731
I N + L S + L+ K E NY N S A+
Sbjct: 401 GNLLNRCLGKKLNISNCESTLVVDSPTVAAEGEPLVDTVEKLPEVAATNYDNFSLYSALE 460
Query: 732 NIHELVNVISKPLMEIAKKKSNADR----------ISTIRYILEKLIIMMSPMIPHLAEE 781
+ + N + + + A K D + I +L + I++ P+ P L+
Sbjct: 461 AVLSIGNAGNTLVQQRAPWKLFKDSQVSAEELAKVLHIILEVLRVIGILLQPVAPSLSLR 520
Query: 782 CWQLLG 787
LG
Sbjct: 521 LLSQLG 526
Score = 40.0 bits (93), Expect = 0.003
Identities = 20/88 (22%), Positives = 40/88 (45%)
Query: 34 KKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAARE 93
+ + + Y + H+GHL + ++ D +ARF R G V+ G D G+ + AA
Sbjct: 39 ETFVLTTPIFYVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAAT 98
Query: 94 HNVHPKMWTYQNIKVMRKQLQSIGLSID 121
+ +P + + R+ + G++
Sbjct: 99 NGRNPPELCDRISQSFRQLWKDAGIAYT 126
>gnl|CDD|30368 COG0018, ArgS, Arginyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 577
Score = 49.5 bits (118), Expect = 4e-06
Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Query: 30 GKNKKKYFVLEMF-PYPSGNIHMGHLRNYVIGDVVARFMRASGYSV 74
GK KK V+E P+G +H+GHLRN +IGD +AR + GY V
Sbjct: 114 GKGKK--VVIEYSSANPTGPLHIGHLRNAIIGDSLARILEFLGYDV 157
>gnl|CDD|185675 cd00671, ArgRS_core, catalytic core domain of arginyl-tRNA
synthetases. Arginyl tRNA synthetase (ArgRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate.
There are at least three subgroups of ArgRS. One type
contains both characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. The second
subtype lacks the KMSKS motif; however, it has a lysine
N-terminal to the HIGH motif, which serves as the
functional counterpart to the second lysine of the
KMSKS motif. A third group, which is found primarily
in archaea and a few bacteria, lacks both the KMSKS
motif and the HIGH loop lysine.
Length = 212
Score = 47.9 bits (115), Expect = 1e-05
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 43 PYPSGNIHMGHLRNYVIGDVVARFMRASGYSVL 75
P+G +H+GHLRN +IGD +AR + GY V
Sbjct: 9 ANPTGPLHVGHLRNAIIGDSLARILEFLGYDVT 41
>gnl|CDD|153413 cd07959, Anticodon_Ia_Leu_AEc, Anticodon-binding domain of archaeal
and eukaryotic cytoplasmic leucyl tRNA synthetases.
This domain is found in leucyl tRNA synthetases (LeuRS),
which belong to the class Ia aminoacyl tRNA synthetases.
It lies C-terminal to the catalytic core domain. In
contrast to other class Ia enzymes, the anticodon is not
used as an identity element in LeuRS (with exceptions
such as Saccharomyces cerevisiae and some other
eukaryotes). No anticodon-binding site can be defined
for this family, which includes archaeal and eukaryotic
cytoplasmic members. LeuRS catalyzes the transfer of
leucine to the 3'-end of its tRNA.
Length = 117
Score = 46.8 bits (112), Expect = 2e-05
Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 15/125 (12%)
Query: 669 WSNKGVDST-------YQFIQQIWRLIYNAKDELQTSSTKKDISLISKSTKFLERIEENY 721
+ + +S Y+ +++ + EL T D L+S+ + ++ E Y
Sbjct: 1 FREEEANSAILRLERFYELAEEL----IETEGEL-EELTFIDRWLLSRLNRLIKETTEAY 55
Query: 722 QNLSFNKAVANIHELVNVISKPLMEIAKKKSNADRISTIRYILEKLIIMMSPMIPHLAEE 781
+N+ F +A + E + + L ++ +R +E +++P PHLAEE
Sbjct: 56 ENMQFREA---LKEGLYELQNDLDWYRERGGAGMNKDLLRRFIEVWTRLLAPFAPHLAEE 112
Query: 782 CWQLL 786
W L
Sbjct: 113 IWHEL 117
>gnl|CDD|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino
acyl-tRNA synthetase. Class I amino acyl-tRNA
synthetase (aaRS) catalytic core domain. These enzymes
are mostly monomers which aminoacylate the 2'-OH of the
nucleotide at the 3' of the appropriate tRNA. The core
domain is based on the Rossman fold and is responsible
for the ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding.
Length = 143
Score = 45.5 bits (108), Expect = 5e-05
Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 4/105 (3%)
Query: 43 PYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWT 102
P+G +H+GHLR V D +A+ R GY V D G + A + + K +
Sbjct: 6 ITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKKGENAKAFV 65
Query: 103 YQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKH 147
+ I+ +++ + + DF + L D + H
Sbjct: 66 ERWIERIKEDV---EYMFLQAADFLL-LYETECDIHLGGSDQLGH 106
>gnl|CDD|153415 cd07961, Anticodon_Ia_Ile_ABEc, Anticodon-binding domain of
archaeal, bacterial, and eukaryotic cytoplasmic
isoleucyl tRNA synthetases. This domain is found in
isoleucyl tRNA synthetases (IleRS), which belong to the
class Ia aminoacyl tRNA synthetases. It lies C-terminal
to the catalytic core domain, and recognizes and
specifically binds to the tRNA anticodon. This family
includes bacterial, archaeal, and eukaryotic cytoplasmic
members. IleRS catalyzes the transfer of isoleucine to
the 3'-end of its tRNA.
Length = 183
Score = 43.7 bits (104), Expect = 2e-04
Identities = 29/156 (18%), Positives = 54/156 (34%), Gaps = 25/156 (16%)
Query: 667 IIWSNKGVDSTYQFIQQ---IWRLIYNAKDELQTSSTKKDISLISKSTKFLERIEENYQN 723
+ N Y+F + D+ S D ++S+ ++ + E +
Sbjct: 15 LPLWN-----AYRFFVTYANLDGFDPGKDDDAVASLNVLDRWILSRLNSLIKEVTEEMEA 69
Query: 724 LSFNKAVANIHELVNV-------ISKPLM---EIAKKKSNADRISTIRYILEKLIIMMSP 773
AV + E ++ ++ E K A +T+ +L L +M+P
Sbjct: 70 YDLYTAVRALLEFIDELTNWYIRRNRKRFWGEEGDDDKLAA--YATLYEVLLTLSRLMAP 127
Query: 774 MIPHLAEECWQLLGNAGLVAQ-----QKWPKLDPIL 804
P + EE +Q L A WP++D L
Sbjct: 128 FTPFITEEIYQNLRRELGDAPESVHLLDWPEVDESL 163
>gnl|CDD|173899 cd00672, CysRS_core, catalytic core domain of cysteinyl tRNA
synthetase. Cysteinyl tRNA synthetase (CysRS)
catalytic core domain. This class I enzyme is a monomer
which aminoacylates the 2'-OH of the nucleotide at the
3' of the appropriate tRNA. The core domain is based on
the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in
ATP binding.
Length = 213
Score = 43.0 bits (102), Expect = 4e-04
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 43 PYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPM 78
P H+GH R YV+ DV+ R++ GY V +
Sbjct: 28 PTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQ 63
Score = 36.8 bits (86), Expect = 0.023
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 629 EKMSKSKKNVIDPMKVIKSYGADTARLFVLS 659
EKMSKS N I +K Y + RL +LS
Sbjct: 173 EKMSKSLGNFITVRDALKKYDPEVLRLALLS 203
>gnl|CDD|144375 pfam00750, tRNA-synt_1d, tRNA synthetases class I (R). Other
tRNA synthetase sub-families are too dissimilar to be
included. This family includes only arginyl tRNA
synthetase.
Length = 345
Score = 42.8 bits (101), Expect = 4e-04
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 31 KNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVL 75
KK V P P+ IH+GHLR+ +IGD ++R + GY V+
Sbjct: 16 LENKKVVVEFSSPNPAKPIHVGHLRSTIIGDALSRLLEFLGYDVV 60
>gnl|CDD|153411 cd07957, Anticodon_Ia_Met, Anticodon-binding domain of methionyl
tRNA synthetases. This domain is found in methionyl
tRNA synthetases (MetRS), which belong to the class Ia
aminoacyl tRNA synthetases. It lies C-terminal to the
catalytic core domain, and recognizes and specifically
binds to the tRNA anticodon (CAU). MetRS catalyzes the
transfer of methionine to the 3'-end of its tRNA.
Length = 129
Score = 41.7 bits (99), Expect = 8e-04
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 16/102 (15%)
Query: 697 TSSTKKDISLISKSTKFLERIEENYQNLSFNKAVANIHELVNVI------SKP--LMEIA 748
T++D L+ ++ + LE + E + L F KA+ I EL + P L
Sbjct: 32 GGLTEEDEELLEEAEELLEEVAEAMEELEFRKALEEIMELARAANKYIDETAPWKL---- 87
Query: 749 KKKSNADRISTIRY----ILEKLIIMMSPMIPHLAEECWQLL 786
K+ + +R++T+ Y +L L I++SP +P AE+ L
Sbjct: 88 AKEEDPERLATVLYVLLELLRILAILLSPFMPETAEKILDQL 129
>gnl|CDD|110410 pfam01406, tRNA-synt_1e, tRNA synthetases class I (C) catalytic
domain. This family includes only cysteinyl tRNA
synthetases.
Length = 301
Score = 39.2 bits (92), Expect = 0.005
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 49 IHMGHLRNYVIGDVVARFMRASGYSV 74
H+GH R+ V DV+ R+++A GY V
Sbjct: 23 SHIGHARSAVAFDVLRRYLQALGYDV 48
Score = 31.5 bits (72), Expect = 1.1
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 629 EKMSKSKKNVIDPMKVIKSYGADTARLFVLS 659
EKMSKS N + V+K Y R F+LS
Sbjct: 252 EKMSKSLGNFLTIRDVLKRYDPRILRYFLLS 282
>gnl|CDD|39627 KOG4426, KOG4426, KOG4426, Arginyl-tRNA synthetase [Translation,
ribosomal structure and biogenesis].
Length = 656
Score = 38.8 bits (90), Expect = 0.007
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 33 KKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVL---HPMGWDA-FGM 85
K+ V P + +H+GHLR+ +IGD + R + SG VL H W FGM
Sbjct: 187 VKRVLVDFSSPNIAKEMHVGHLRSTIIGDSLCRLLEFSGVDVLRRNHVGDWGTQFGM 243
>gnl|CDD|173900 cd00674, LysRS_core_class_I, catalytic core domain of class I
lysyl tRNA synthetase. Class I lysyl tRNA synthetase
(LysRS) catalytic core domain. This class I enzyme is a
monomer which aminoacylates the 2'-OH of the nucleotide
at the 3' of the appropriate tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in
ATP binding. The class I LysRS is found only in archaea
and some bacteria and has evolved separately from class
II LysRS, as the two do not share structural or
sequence similarity.
Length = 353
Score = 38.5 bits (90), Expect = 0.008
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 31 KNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAF 83
+ K+ +V+ PSG+IH+G+ R + D+VAR +R G+ V WD +
Sbjct: 15 RKGKEKYVVASGISPSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDY 67
>gnl|CDD|37218 KOG2007, KOG2007, KOG2007, Cysteinyl-tRNA synthetase [Translation,
ribosomal structure and biogenesis].
Length = 586
Score = 37.7 bits (87), Expect = 0.013
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 629 EKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDIIWSNKGVDSTYQFIQQIWRLI 688
EKMSKS KN I + +K Y RL L + +S+ ++ Q + +
Sbjct: 304 EKMSKSLKNFITIKEALKKYSPRQLRLAFLLHQWRS-PLDYSDSTMEQALQLEKSLNNFF 362
Query: 689 YNAKDELQ 696
+ K L+
Sbjct: 363 LDVKALLR 370
Score = 30.7 bits (69), Expect = 1.7
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 50 HMGHLRNYVIGDVVARFMRAS-GYSVLHPMG 79
HMGH R+YV D++ R +R GY V M
Sbjct: 70 HMGHARSYVSFDILRRILRDYFGYDVTFVMN 100
>gnl|CDD|31574 COG1384, LysS, Lysyl-tRNA synthetase (class I) [Translation,
ribosomal structure and biogenesis].
Length = 521
Score = 35.2 bits (81), Expect = 0.080
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 45 PSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWD 81
PSG IH+G+ R + D V R +R G V D
Sbjct: 29 PSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISD 65
>gnl|CDD|36409 KOG1195, KOG1195, KOG1195, Arginyl-tRNA synthetase [Translation,
ribosomal structure and biogenesis].
Length = 567
Score = 34.9 bits (80), Expect = 0.11
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 10/80 (12%)
Query: 11 TDSIWQSAWYDSNIF-KAENGKNKKKYFVLEMFPYPSGNI----HMGHLRNYVIGDVVAR 65
S+ + K E G KK V+E + S NI H+GHLR+ +IG+ +A
Sbjct: 87 IKSVLPIIEEQREKYGKNELGSGKK--IVVE---FSSPNIAKPFHVGHLRSTIIGNFLAN 141
Query: 66 FMRASGYSVLHPMGWDAFGM 85
A G+ V +G
Sbjct: 142 LHEALGWEVTRVNYLGDWGK 161
>gnl|CDD|145212 pfam01921, tRNA-synt_1f, tRNA synthetases class I (K). This
family includes only lysyl tRNA synthetases from
prokaryotes.
Length = 355
Score = 34.1 bits (79), Expect = 0.18
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 8/58 (13%)
Query: 45 PSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAF--------GMPAENAAREH 94
PSG H+G+ R + D V R +R G+ D +P ++
Sbjct: 29 PSGLPHIGNFREVLRTDAVRRALRKRGFETRLIYFSDDMDGLRKVPDNVPNSEMLEKY 86
>gnl|CDD|36461 KOG1247, KOG1247, KOG1247, Methionyl-tRNA synthetase
[Translation, ribosomal structure and biogenesis].
Length = 567
Score = 33.0 bits (75), Expect = 0.40
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 32 NKKKYFVLEMFPYPSGNIHMGHLRNYVI-GDVVARFMRASGYSVLHPMGWDAFGMPAENA 90
N++ + PY + H+G++ V+ DV AR+ G + L+ G D +G E
Sbjct: 12 NERNILITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETK 71
Query: 91 AREHNVHPK 99
A E + P+
Sbjct: 72 ALEEGLTPQ 80
>gnl|CDD|32035 COG1850, RbcL, Ribulose 1,5-bisphosphate carboxylase, large subunit
[Carbohydrate transport and metabolism].
Length = 429
Score = 31.4 bits (71), Expect = 1.2
Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 23/72 (31%)
Query: 41 MFPYPSGNIHMGHLRNYVIGDVVARF-----MRASGYSVLHPMG-----------WDAF- 83
+FP SG IH G + ++V F ++A G HP G +A
Sbjct: 347 VFPVASGGIHPGM-----MPELVRIFGKDLVIQAGGGVHGHPDGPAAGARAVRQAIEAAV 401
Query: 84 -GMPAENAAREH 94
G+P A+ H
Sbjct: 402 EGIPLREYAKWH 413
>gnl|CDD|173977 cd08212, RuBisCO_large_I, Ribulose bisphosphate carboxylase large
chain, Form I. Ribulose bisphosphate carboxylase
(Rubisco) plays an important role in the Calvin
reductive pentose phosphate pathway. It catalyzes the
primary CO2 fixation step. Rubisco is activated by
carbamylation of an active site lysine, stabilized by a
divalent cation, which then catalyzes the proton
abstraction from the substrate ribulose 1,5 bisphosphate
(RuBP) and leads to the formation of two molecules of
3-phosphoglycerate. Members of the Rubisco family can be
divided into 4 subgroups, Form I-IV , which differ in
their taxonomic distribution and subunit composition.
Form I is the most abundant class, present in plants,
algae, and bacteria, and forms large complexes composed
of 8 large and 8 small subunits.
Length = 450
Score = 30.5 bits (69), Expect = 2.3
Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 7/55 (12%)
Query: 42 FPYPSGNIHMGH---LRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAARE 93
P SG IH+G L DVV +F G ++ HP G A G A A E
Sbjct: 352 MPVASGGIHVGQMHQLIEIFGDDVVLQF---GGGTIGHPWG-IAAGATANRVALE 402
>gnl|CDD|32470 COG2316, COG2316, Predicted hydrolase (HD superfamily) [General
function prediction only].
Length = 212
Score = 30.0 bits (67), Expect = 3.2
Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 12/84 (14%)
Query: 466 LPEDLDFTLPGNPLENHPTWKKIFCVKCGSEALRETDTMDTFVDSSWYYMRYMTPHAKDP 525
L D D+ L E H W G E LRE D + +D+ + Y +
Sbjct: 78 LLHDFDYELTQGDPEEHGLW--------GVEILREEDVSEEILDAIMGHAAYTGTPRETR 129
Query: 526 INKELVRQWFPVDQYIGGIEHAVL 549
+ + L F VD+ G I+ A L
Sbjct: 130 LEQAL----FAVDELTGLIQAAAL 149
>gnl|CDD|173971 cd08206, RuBisCO_large_I_II_III, Ribulose bisphosphate carboxylase
large chain, Form I,II,III. Ribulose bisphosphate
carboxylase (Rubisco) plays an important role in the
Calvin reductive pentose phosphate pathway. It catalyzes
the primary CO2 fixation step. Rubisco is activated by
carbamylation of an active site lysine, stabilized by a
divalent cation, which then catalyzes the proton
abstraction from the substrate ribulose 1,5 bisphosphate
(RuBP) and leads to the formation of two molecules of
3-phosphoglycerate. Members of the Rubisco family can be
divided into 4 subgroups, Form I-IV, which differ in
their taxonomic distribution and subunit composition.
Form I-III have Rubisco activity, while Form IV, also
called Rubico-like proteins (RLP), are missing critical
active site residues.
Length = 414
Score = 29.5 bits (67), Expect = 3.8
Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 19/70 (27%)
Query: 41 MFPYPSGNIHMGHLR---NYVIGDVVARFMRASGYSVLHPMG-----------WDAF--G 84
+FP SG +H G + + DV+ ++ G + HP G +A+ G
Sbjct: 338 VFPVASGGLHPGRMPALIEILGDDVI---LQFGGGTHGHPDGPAAGAKANRQALEAWVQG 394
Query: 85 MPAENAAREH 94
A+ H
Sbjct: 395 RILREYAKTH 404
>gnl|CDD|63887 cd03556, L-fucose_isomerase, L-fucose isomerase (FucIase); FucIase
converts L-fucose, an aldohexose, to its ketose form,
which prepares it for aldol cleavage (similar to the
isomerization of glucose during glycolysis). L-fucose
(or 6-deoxy-L-galactose) is found in blood group
determinants as well as in various oligo- and
polysaccharides, and glycosides in mammals, bacteria and
plants..
Length = 584
Score = 29.2 bits (65), Expect = 4.5
Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 11/89 (12%)
Query: 9 QETDSIWQSAWYDSNIFKAENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMR 68
+ TD W + W+ + G K Y V+ + G I GH+ +I +A +R
Sbjct: 487 KRTDPTWPTTWFAPRL--TGKGAFKDVYDVMNNWGANHGAITHGHIGADLI--TLASMLR 542
Query: 69 -------ASGYSVLHPMGWDAFGMPAENA 90
+ P W+AFGM E A
Sbjct: 543 IPVCMHNVPEEKIFRPNAWNAFGMDLEGA 571
>gnl|CDD|36092 KOG0874, KOG0874, KOG0874, Sphingolipid hydroxylase [Lipid
transport and metabolism].
Length = 287
Score = 28.8 bits (64), Expect = 6.8
Identities = 13/46 (28%), Positives = 20/46 (43%)
Query: 565 GYIEIDEPFKRLFTQGMVVHETYYQLEGIKKKYLKPDEVILRNIEG 610
GY +PF+ F H+ ++QL G K + +P I G
Sbjct: 216 GYWLPGDPFQMFFPNNAAYHDIHHQLYGTKYNFSQPFFTFWDRILG 261
>gnl|CDD|33087 COG3276, SelB, Selenocysteine-specific translation elongation
factor [Translation, ribosomal structure and
biogenesis].
Length = 447
Score = 28.8 bits (64), Expect = 7.0
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 567 IEIDEPFKRLFTQGMVVH--ETYYQLEGIKKKYLKPDEVILR--NIEGENCAFRLSDNSK 622
+EID FK+ QG VH + G K E+ L G+N L DNS
Sbjct: 268 LEIDPLFKKTLKQGQPVHIHVGLRSVTGRIVPLEKNAELNLVKPIALGDNDRLVLRDNSA 327
Query: 623 VV 624
V+
Sbjct: 328 VI 329
>gnl|CDD|36520 KOG1306, KOG1306, KOG1306, Ca2+/Na+ exchanger NCX1 and related
proteins [Inorganic ion transport and metabolism, Signal
transduction mechanisms].
Length = 596
Score = 28.8 bits (64), Expect = 7.4
Identities = 13/68 (19%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 189 LPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIRWEIVSNTIDQIEEI 248
LP F +S ++ + SIE ++ +V +++ G +R + + T+ + +
Sbjct: 35 LPYAFLGVSIIADRFMASIEVITSASREVIVIKPT--GEESTTYVR--VWNETVSNLTLM 90
Query: 249 LVYTTRPE 256
+ ++ PE
Sbjct: 91 ALGSSAPE 98
>gnl|CDD|30594 COG0245, IspF, 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
[Lipid metabolism].
Length = 159
Score = 28.6 bits (64), Expect = 7.6
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 7/63 (11%)
Query: 663 PDRDIIWSNKGVDSTYQFIQQIWRLIYNAKDELQTSSTKKDISLISKSTKFLERIEENYQ 722
PD D W KG DS +++ L+ E DI++I++ K E
Sbjct: 62 PDTDPRW--KGADSR-ILLKEAVELV----REKGYRIGNVDITIIAQRPKLGPYREAMRA 114
Query: 723 NLS 725
N++
Sbjct: 115 NIA 117
>gnl|CDD|31391 COG1198, PriA, Primosomal protein N' (replication factor Y) -
superfamily II helicase [DNA replication, recombination,
and repair].
Length = 730
Score = 28.4 bits (63), Expect = 9.4
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 11/60 (18%)
Query: 445 PVIHCQKCG-IVELPKEDLPVQLPEDLDFTLPGNPLE----NHPTWKKIFCVKCGSEALR 499
P++ C+ CG I E P D P+ L + L + C +CGSE LR
Sbjct: 434 PLLLCRDCGYIAECPNCDSPLTLHKA------TGQLRCHYCGYQEPIPQSCPECGSEHLR 487
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.320 0.136 0.415
Gapped
Lambda K H
0.267 0.0585 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 11,017,970
Number of extensions: 610940
Number of successful extensions: 1552
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1488
Number of HSP's successfully gapped: 109
Length of query: 869
Length of database: 6,263,737
Length adjustment: 102
Effective length of query: 767
Effective length of database: 4,059,619
Effective search space: 3113727773
Effective search space used: 3113727773
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.0 bits)