RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780802|ref|YP_003065215.1| leucyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] (869 letters) >gnl|CDD|30841 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]. Length = 814 Score = 890 bits (2300), Expect = 0.0 Identities = 366/874 (41%), Positives = 518/874 (59%), Gaps = 70/874 (8%) Query: 4 RSYSPQETDSIWQSAWYDSNIFKA-ENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDV 62 Y+P+E + WQ W ++ +F+A E+ +K++VL MFPYPSG +H+GH+RNY IGDV Sbjct: 3 SRYNPREIEEKWQKRWEEAKVFEADEDSDKPEKFYVLVMFPYPSGALHVGHVRNYTIGDV 62 Query: 63 VARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQLQSIGLSIDW 122 +AR+ R GY+VLHPMGWDAFG+PAENAA + P WTY NI M+KQL+S+G SIDW Sbjct: 63 IARYKRMQGYNVLHPMGWDAFGLPAENAAIKIGTDPAKWTYYNIAYMKKQLKSLGFSIDW 122 Query: 123 SKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQVINGRGWRSDA 182 ++FATCD +YY Q FL + + RK A VNW PV+ TVLANEQVI+G WR Sbjct: 123 RREFATCDPEYYKWIQWQFLKLYEKGLAYRKEAPVNWCPVDGTVLANEQVIDGGCWRCGE 182 Query: 183 PVEQRSLPQWFFKISDLSQELLDSIETL-SEWPEKVKIMQKNWIGRSEGMEIRWEIVSNT 241 PVE + L QWFFKI+D + ELLD ++ L + WPE VK MQ+NWIG SEG E+ + + Sbjct: 183 PVEIKELTQWFFKITDYADELLDDLDKLATLWPETVKGMQRNWIGPSEGYEVAFVVDGE- 241 Query: 242 IDQIEEILVYTTRPETIFGASFIAIAVDHSISEKLSCDNT--DIKEFCDEEKQKGTSLSV 299 ++I I V+TTRP+T+FG +++ +A +H + KL + + EF DE K G SV Sbjct: 242 -EEIVSIEVFTTRPDTLFGVTYVVLAPEHPLVGKLVTNPQTPLVAEFVDECKGTGVVESV 300 Query: 300 LDKTEKKGIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIFGCPFADQRDMDFAKKYG 359 EK G++ G + +P+N IPV+IAN+V M YGTGA+ G P D+RD++FA KY Sbjct: 301 PAHAEKDGVFLGGYAINPVNGE-KIPVWIANYVLMEYGTGAVMGVPAHDERDLEFATKYK 359 Query: 360 LPIIPIMKRSINHSQDIEEGKAFSGDGIMINSSFLDGMTNTEALQAVMSHLEKQNIKNSP 419 LPI ++ K + G+G++INS LDG+ EA + L K+ Sbjct: 360 LPIKKVIMPE-----GTVGKKVYEGEGVLINSGGLDGLDYEEAKVKIRCGLVKRG----- 409 Query: 420 IGKRKINFRLRDWCISRQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPL 479 +G+ +N+RLRDW SRQR WG PIP+IHC+ CG+V +P++ LPV+LPE + G+PL Sbjct: 410 LGQWFVNYRLRDWLKSRQRYWGEPIPIIHCEDCGVVPVPEDWLPVKLPERVRGLGTGSPL 469 Query: 480 ENHPTWKKIFCVKCGSEALRETDTMDTFVDSSWYYMRYMTPHAKD--PINKELVRQWFPV 537 W S A RETDTMDTF+DSSWYY+R+ P P ++E W+PV Sbjct: 470 PWDEEWVIESLPD--STAYRETDTMDTFIDSSWYYLRFFDPIFLGELPFDREEFNYWYPV 527 Query: 538 DQYIGGIEHAVLHLLYARFFAHILKKIGYIEIDEPFKRLFTQGMVVHETYYQLEGIKKKY 597 D YIGGIEHAVLHLLY RFF L G + DEPFK+L TQGMV+ E Sbjct: 528 DLYIGGIEHAVLHLLYFRFFHKALFDEGLVPKDEPFKKLITQGMVLGEE----------- 576 Query: 598 LKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFV 657 EKMSKSK NV+DP + ++ YGADT RL++ Sbjct: 577 ------------------------------GEKMSKSKGNVVDPEEAVEKYGADTVRLYI 606 Query: 658 LSDSPPDRDIIWSNKGVDSTYQFIQQIWRLIYNAKDELQTSSTKKDI-SLISKSTKFLER 716 + +PP++D+ WS GV+ +F+Q++W L+ ++L TK+ + +++ Sbjct: 607 MFAAPPEQDLEWSESGVEGARRFLQRVWNLVKEHLEKLVEELTKEQGKEDRWLLHRTIKK 666 Query: 717 IEENY-QNLSFNKAVANIHELVNVISKPLMEIAKKKSNADRISTIRYILEKLIIMMSPMI 775 + E++ +FN A+A + EL+N + K L + +R LE + +++P Sbjct: 667 VTEDFEARQTFNTAIAALMELLNALRKYL------RRTEGDRKVLREALETWVRLLAPFA 720 Query: 776 PHLAEECWQLLGNAGLVAQQKWPKLDPILEVNTDIILPIQVNGKKRACITVSMNTDDDFI 835 PH+AEE W+ LGN G V+ WP+ D V ++ + +QVNGK RA V+ + D++ + Sbjct: 721 PHIAEELWEELGNEGFVSNAPWPEPDEEALVEDEVEIVVQVNGKVRAREVVAADADEEKV 780 Query: 836 KKTVLELNVIKNILQGKSPKKIIIISKRIVNIVV 869 K+ L ++ LQGK+ KK+I + + VNIV Sbjct: 781 KEIALADEEVQKFLQGKTIKKVIAVPGKPVNIVE 814 >gnl|CDD|35656 KOG0435, KOG0435, KOG0435, Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]. Length = 876 Score = 754 bits (1948), Expect = 0.0 Identities = 349/887 (39%), Positives = 495/887 (55%), Gaps = 67/887 (7%) Query: 3 TRSYSPQETDSIWQSAWYDSNIFKAENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDV 62 + + + W+ D F ++ K+KKKY +L MFPYPSG +H+GH+R Y I D+ Sbjct: 27 KKEIAIAMIEKHWKQYLKDGFPFSKDSDKSKKKY-ILSMFPYPSGALHIGHVRVYTISDI 85 Query: 63 VARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQLQSIGLSIDW 122 +ARF R GY+V+HPMGWDAFG+PAENAA E VHP WT NI M++QL+S+G+S DW Sbjct: 86 LARFYRMKGYNVIHPMGWDAFGLPAENAAIERGVHPASWTINNIAKMKQQLKSLGISFDW 145 Query: 123 SKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQV-INGRGWRSD 181 ++ +TC+ DYY Q +FL + + + A+VNWDPV++TVLANEQV +G WRS Sbjct: 146 DREISTCEPDYYKWTQWIFLKLFEKGLAYQAEAEVNWDPVDKTVLANEQVDADGCSWRSG 205 Query: 182 APVEQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIRWEIVSNT 241 A VE++ L QWF K + ++ LLD +ETL EWPE VK MQ+NWIGR +G E+ + ++ + Sbjct: 206 AKVEKKKLRQWFIKTTAYAKRLLDGLETLPEWPE-VKDMQRNWIGRCDGAELMFPLLDDG 264 Query: 242 IDQIEEILVYTTRPETIFGASFIAIAVDHSISEKLSCDNTDIKEFCDEEKQKGTSLSVLD 301 E + VYTTRPET+FGASF+ +A HS+ +K S +KEF + Sbjct: 265 -SNDEILTVYTTRPETLFGASFLVLAPSHSLLDKDS----SLKEFLSK-----------S 308 Query: 302 KTEKKGIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIFGCPFADQRDMDFAKKYGLP 361 +KG+ K+P+ IPV +A++V YGTGA+ G P DQRD + A+K G+ Sbjct: 309 DLPQKGVQLPCQAKNPVTGR-AIPVVVADYVLDPYGTGAVMGAPGHDQRDKELAQKIGIK 367 Query: 362 IIPIMKRSINHSQDIEEGKAFSGDG-IMINSSFLDGMTNTEALQAVMSHLEKQNIKNSPI 420 I I F+ G +F + A + E++ + Sbjct: 368 WI------------ICIEVIFTNFGKKNEQKAFTNLDIRQNAALKLFQFAERKG-----V 410 Query: 421 GKRKINFRLRDWCISRQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLE 480 G ++++L+DW ISRQR WG PIP++HC CG V +P+ +LPV LPE DFT G PL Sbjct: 411 GGYVVSYKLKDWLISRQRYWGTPIPIVHCDDCGAVPVPESELPVTLPELNDFTPKGPPLS 470 Query: 481 NHPTWKKIFCVKCGSEALRETDTMDTFVDSSWYYMRYMTPHAKD-PINKELVRQWFPVDQ 539 W + C +CG A RETDTMDTFVDSSWYY+RY+ P + P +K ++ PVD Sbjct: 471 KADEWVNVDCPRCGEPAKRETDTMDTFVDSSWYYLRYLDPKNPEEPFDKAKAKKNMPVDV 530 Query: 540 YIGGIEHAVLHLLYARFFAHILKKIGYIEIDEPFKRLFTQGMVVHETYYQLEGIKKKYLK 599 YIGG EHAVLHLLYARF A LK IG + EPF +L TQGMV +T+ E KYL Sbjct: 531 YIGGKEHAVLHLLYARFIAKFLKDIGVVSTAEPFTKLITQGMVRGKTFRTKE--SGKYLG 588 Query: 600 PDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLS 659 P+EV N F L ++ +VV+ EKMSKSK N +DP V+ YG DT RL++L Sbjct: 589 PEEVQQVNDHQNK--FVLKNDKEVVVVTYEKMSKSKHNGVDPADVVLEYGVDTTRLYILF 646 Query: 660 DSPPDRDIIWSNKGVDSTYQFIQQIWRLIYNAKDELQTSSTKK-----------DISLIS 708 +PP I W+ + +++Q+IW L+ K L Sbjct: 647 AAPPRDPINWNESAIPGIKRWLQRIWALVSQILQARDDGKAKDLKKLTDGFDAETRKLKE 706 Query: 709 KSTKFLERIEENYQNL-SFNKAVANIHELVNVISKPLMEIAKKKSNADRISTIRYILEKL 767 F++++ E+Y+ L S N A++++ L N + K L K LE L Sbjct: 707 TYNFFIKQVTEHYEVLFSLNTAISDMMGLTNALKKAL------KIVLVHSPEFERALEAL 760 Query: 768 IIMMSPMIPHLAEECWQLLGNAG-LVAQQKWPKLDPILEVNTDIILPIQVNGKKRACITV 826 +IM++P PH+A E W L N V+ KWP++DP + +++ P+Q+NGK R I V Sbjct: 761 VIMLAPFAPHVASELWSALANDLSWVSDVKWPEVDPDYLIEFEVL-PVQINGKVRGKIEV 819 Query: 827 SMNTDDDFIKK---TVLELNVIKNILQGKSPKKIIIISKR-IVNIVV 869 ++ + L+ + L+GK KK + +R I+N ++ Sbjct: 820 DRRILEEMMDDALEFALQTEDGRRYLKGKKIKKSFYVPRRKIINFIL 866 >gnl|CDD|30871 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]. Length = 877 Score = 296 bits (758), Expect = 2e-80 Identities = 201/892 (22%), Positives = 328/892 (36%), Gaps = 270/892 (30%) Query: 5 SYSPQETDSIWQSAWYDSNIFKAENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVA 64 +Y P+E + W W +S FK + ++K + + P +G++HMGH NY + D++A Sbjct: 4 TYDPKEIEEKWYKKWEESGYFKPDPNEDKPPFSIDTPPPNVTGSLHMGHALNYTLQDILA 63 Query: 65 RFMRASGYSVLHPMGWDAFGMPAENA----AREHNVHP------------KMWTYQNIKV 108 R+ R GY+VL P G D G+ + + W ++ Sbjct: 64 RYKRMRGYNVLWPPGTDHAGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEESGGT 123 Query: 109 MRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLA 168 +R+QL+ +G+S+DWS++ T D Q F+ + +I R VNW P +T + Sbjct: 124 IREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLYEKGLIYRGERLVNWCPKCRTAI- 182 Query: 169 NEQVINGRGWRSDAPVEQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRS 228 SD VE + + Sbjct: 183 -----------SDIEVEYKEVEGKL----------------------------------- 196 Query: 229 EGMEIRWEIVSNTIDQIEEILVYTTRPETIFGASFIAIAVDHSISEKLSCDNTDIKEFCD 288 + I D ++V TTRPET+ G + A+AV D Sbjct: 197 ------YYIKYPLADGDGYLVVATTRPETLLGDT--AVAVHP-----------------D 231 Query: 289 EEKQKGTSLSVLDKTEKKGIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIFGCPFAD 348 +E+ K G V PL IP+ +V +GTGA+ P D Sbjct: 232 DERYKH--------------LVGKEVILPL-VGREIPIIADEYVDPEFGTGAVKITPAHD 276 Query: 349 QRDMDFAKKYGLPIIPIMKRSINHSQDIEEGKAFSGDGIMINSSF--LDGMTNTEALQAV 406 D + K++ LP+I I+ DG + + G+ EA + + Sbjct: 277 FNDYEVGKRHNLPLINIIDE----------------DGRINEEAAGEFAGLDRFEARKKI 320 Query: 407 MSHLEKQN-------------------------------IKNSPIGKR--------KINF 427 + LE+Q +K + K+ KI F Sbjct: 321 VEDLEEQGLLVKIEPHKHSVGHCERCGTPIEPLLSKQWFVKVLELAKKALEAVKDGKIKF 380 Query: 428 --------------RLRDWCISRQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFT 473 +RDWCISRQ WG IPV +C++CG V + +E PED Sbjct: 381 VPERMEKRYEDWMENIRDWCISRQLWWGHRIPVWYCKECGNVVVAEE-----EPEDP--- 432 Query: 474 LPGNPLENHPTWKKIFCVKCGSEALRETDTMDTFVDSSWYYMRYMTPHA--KDPINKELV 531 C K E ++ D +DT+ SS + P + P + Sbjct: 433 -----------AAAEKCPKEELE--QDEDVLDTWFSSS------LWPFSTLGWPEETPDL 473 Query: 532 RQWFPVDQYIGGIEHAVLHLLYAR--FFAHILKKIGYIEIDEPFKRLFTQGMVVHETYYQ 589 ++++P D + G H ++ AR L + PFK ++ G+V Sbjct: 474 KKFYPTDLLVTG--HDIIFFWVARMIMRGLHLTG------EVPFKDVYIHGLV------- 518 Query: 590 LEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYG 649 R+ +G KMSKSK NVIDP+ VI YG Sbjct: 519 ----------------RDEQG------------------RKMSKSKGNVIDPLDVIDKYG 544 Query: 650 ADTARLFVLSDSPPDRDIIWSNKGVDSTYQFIQQIW---RLIYNAKDELQTSSTKKDIS- 705 AD R + S + P RDI + K V+ F+ ++W R + D+L Sbjct: 545 ADALRFTLASLASPGRDINFDEKRVEGYRNFLNKLWNATRFVLMNLDDLGPDDLDLLALS 604 Query: 706 -----LISKSTKFLERIEENYQNLSFNKAVANIHELV-NVISKPLMEIAKKKSNADR--- 756 ++S+ + ++ + E N F++A ++E + N +E+AK + Sbjct: 605 LADRWILSRLNETVKEVTEALDNYRFDEAARALYEFIWNDFCDWYLELAKPRLYGGEEEK 664 Query: 757 ---ISTIRYILEKLIIMMSPMIPHLAEECWQLLGNAGLVAQQKWPKLDPILE 805 +T+ Y+L+ L+ ++ P +P + EE WQ L + WP++D L Sbjct: 665 RAARATLYYVLDTLLRLLHPFMPFITEEIWQKLPGTESIHLASWPEVDEELI 716 >gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. Length = 314 Score = 244 bits (625), Expect = 9e-65 Identities = 90/216 (41%), Positives = 125/216 (57%), Gaps = 35/216 (16%) Query: 35 KYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREH 94 K+++L MFPYPSG +H+GH+R Y IGD++AR+ R GY+VL PMG+DAFG+PAENAA + Sbjct: 1 KFYILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKI 60 Query: 95 NVHPKMWTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKT 154 P+ WT NIK M++QL+ +G S DW ++F TCD +YY Q LFL + + +K Sbjct: 61 GRDPEDWTEYNIKKMKEQLKRMGFSYDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYKKE 120 Query: 155 AQVNWDPVEQTVLANEQVINGRGWRSDAPVEQRSLPQWFFKIS--DLSQELLDSIETLSE 212 A VNW + L QWF K S + ++LL +E L Sbjct: 121 APVNWC--------------------------KLLDQWFLKYSETEWKEKLLKDLEKLDG 154 Query: 213 WPEKVKIMQKNWIG----RSEGMEIRWEIVSNTIDQ 244 WPE+V+ MQ+NWIG R G I W +T++ Sbjct: 155 WPEEVRAMQENWIGCSRQRYWGTPIPWT---DTMES 187 Score = 163 bits (415), Expect = 2e-40 Identities = 67/176 (38%), Positives = 82/176 (46%), Gaps = 50/176 (28%) Query: 501 TDTMDTFVDSSWYYMRYMTPHAKDPI-------NKELVRQWFPVDQYIGGIEHAVLHLLY 553 TDTM++ DS+WYY RY H + ++E W+PVD YIGG EHA HLLY Sbjct: 182 TDTMESLSDSTWYYARYTDAHNLEQPYEGDLEFDREEFEYWYPVDIYIGGKEHAPNHLLY 241 Query: 554 ARFFAHILKKIGYIEIDEPFKRLFTQGMVVHETYYQLEGIKKKYLKPDEVILRNIEGENC 613 +RF L G + DEP K L QGMV+ E Sbjct: 242 SRFNHKALFDEGLV-TDEPPKGLIVQGMVLLEG--------------------------- 273 Query: 614 AFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDIIW 669 EKMSKSK NV+ P + IK YGAD ARL++L +PPD D W Sbjct: 274 ---------------EKMSKSKGNVVTPDEAIKKYGADAARLYILFAAPPDADFDW 314 >gnl|CDD|30409 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]. Length = 933 Score = 229 bits (585), Expect = 3e-60 Identities = 189/916 (20%), Positives = 331/916 (36%), Gaps = 235/916 (25%) Query: 5 SYSPQETDSIWQSAWYDSNIF---KAENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGD 61 + + + W +++I+ + E K K K+ + + PY +GNIH+GH N ++ D Sbjct: 17 RANLPKKEPKILKFWEENDIYEKIREERNKGKPKFVLHDGPPYANGNIHIGHALNKILKD 76 Query: 62 VVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKM----------------WTYQN 105 ++ R+ GY V + GWD G+P E + K + + Sbjct: 77 IIVRYKTMQGYDVPYVPGWDCHGLPIELKVEKKLGIGKKDIESFGVEEFREKCREFALEQ 136 Query: 106 IKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQT 165 + ++Q + +G+ DW + T D Y F + + ++ R V W P +T Sbjct: 137 VDEQKEQFKRLGVWGDWENPYKTMDPSYEESVWWAFKELYEKGLLYRGYKPVPWSPRCET 196 Query: 166 VLANEQVINGRGWRSDAPVEQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWI 225 LA +V E+ + Sbjct: 197 ALAEAEV---------------------------------------EYGDVK-------- 209 Query: 226 GRSEGMEIRWEIVSNTIDQIEEILVYTTRPETIFGASFIAIAVDHSISEKLSCDNTDI-- 283 + +++ + +D+ ++++TT P T+ + +AIAV + L N + Sbjct: 210 --DPSIYVKFPVKDEGLDENAYLVIWTTTPWTL--PANLAIAVHPDLDYVLVEVNGEKLI 265 Query: 284 --KEFCDE--EKQKGTSLSVLDKTEKKGIYTGIHVKHPLN---PNVVIPVYIANFVFMNY 336 K + +K VL +T K G+ +HP + PV + + V ++ Sbjct: 266 LAKALVESVAKKAGVEDYEVL-ETFKGSELEGLRYEHPFYDFVYDRAFPVILGDHVTLDD 324 Query: 337 GTGAIFGCPFADQRDMDFAKKYGL--PIIPIMKRSINHSQDIEEGKAFSGDGIMINSSFL 394 GTG + P + D + KKYGL + P+ EE + G + Sbjct: 325 GTGLVHTAPGHGEEDYEVGKKYGLLEVLNPVDDNGRY----TEEAPKYEGLFVK------ 374 Query: 395 DGMTNTEALQAVMSHLEKQN-------IKNS---------PIGKR--------------- 423 +A + ++ L+++ I++S P+ R Sbjct: 375 ------DANKKIIEDLKEKGNLLKSEKIEHSYPHCWRTKTPLIYRATPQWFVSVDKLRDK 428 Query: 424 ------KINF-------RL-------RDWCISRQRSWGCPIPVIHCQKCGIVELPKEDL- 462 K+N+ R DWCISRQR WG PIPV +C++ G + + E+L Sbjct: 429 MLKEINKVNWVPDWGKNRFGNMVENRPDWCISRQRYWGVPIPVWYCKETGEILVITEELE 488 Query: 463 --PVQLPEDLDFTLPGNPLENHPTWKKIFCVKCGSEALRETDTMDTFVDSSWYYMRYMTP 520 QL E+ P + C + G E R D +D + DS TP Sbjct: 489 ELVGQLVEEKGIDDWHRPDIDELLPP---CPEDGKEYRRVPDVLDVWFDSG------STP 539 Query: 521 HAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIGYIEIDE-PFKRLFTQ 579 +A + L D Y+ G + R + + P+K + T Sbjct: 540 YAVLHPRENLKFPALFADFYLEGSDQT-------RGWFYSSLLTSTALFGRAPYKNVLTH 592 Query: 580 GMVVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVI 639 G V+ E +G KMSKS NV+ Sbjct: 593 GFVLDE-----------------------KGR------------------KMSKSLGNVV 611 Query: 640 DPMKVIKSYGADTARLFVLSDSPPDRDIIWSNKGVDSTYQFIQQIWR-----LIYNAKDE 694 DP VI YGAD RL+V S S D+ +S++ + + ++I L + Sbjct: 612 DPQDVIDKYGADILRLWVAS-SDYWEDLRFSDEILKQVREVYRKIRNTYRFLLGNLDDFD 670 Query: 695 LQTSSTKK------DISLISKSTKFLERIEENYQNLSFNKAVANIHELVNV--------I 740 + + D ++S+ ++ + E Y+N F+K V + V+ I Sbjct: 671 PKKDAVLPEELRELDRWILSRLNSLVKEVREAYENYDFHKVVRALMNFVSEDLSNWYLDI 730 Query: 741 SKPLMEIAKKKSNADR--ISTIRYILEKLIIMMSPMIPHLAEECWQLLGNAGL---VAQQ 795 K + S R +T+ +IL+ L+ +++P++P AEE WQ L V + Sbjct: 731 IKDRLYTEAADSPDRRAAQTTLYHILKALVRLLAPILPFTAEEIWQNLPGERKEESVHLE 790 Query: 796 KWPKLDPILEVNTDII 811 WP++D L + Sbjct: 791 DWPEVDEELIDVEAAL 806 >gnl|CDD|143905 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L, M and V). Other tRNA synthetase sub-families are too dissimilar to be included. Length = 606 Score = 181 bits (461), Expect = 9e-46 Identities = 148/734 (20%), Positives = 245/734 (33%), Gaps = 207/734 (28%) Query: 15 WQSAWYDSNIFKA--ENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGY 72 W + FK ENGK K + + + P +G +H+GH N + D+V R+ R G+ Sbjct: 2 IYQFWDEQGYFKKSLENGKGKPSFTIHDGPPNATGLLHIGHALNKTLKDIVIRYKRMQGF 61 Query: 73 SVLHPMGWDAFGMPAEN------AAREHNVHPKM-----------WTYQNIKVMRKQLQS 115 VL GWD G+P E + K+ W + +R Q + Sbjct: 62 DVLWVPGWDHHGLPTEQKVEKKLGIKGKKDRHKLGREKFREKCREWKMEYADEIRSQFKR 121 Query: 116 IGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQVING 175 +G+S DW +++ T D +F+ +I R VNW P T L Sbjct: 122 LGVSGDWDREYFTLDPGLEAAVWRVFVRLHDKGLIYRGKKPVNWSPALNTAL-------- 173 Query: 176 RGWRSDAPVEQRSL--PQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEI 233 S+A VE + + P L D Sbjct: 174 ----SEAEVEYKDVKGPSIHVAF-----PLADGKGA------------------------ 200 Query: 234 RWEIVSNTIDQIEEILVYTTRPETIFGASFIAIAVDHSISEKLSCDNTDI--KEFCDEEK 291 ++++TT P T+ G + +A+ + + + I + Sbjct: 201 -------------SLVIWTTTPWTLPGNTAVAVNPEFNYVKIRVTGEYYILAEALLKSLY 247 Query: 292 QKGTSLSVLDKTEKKGIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIFGCPFADQRD 351 +K + + + G HP IP+ ++V M +GTGA+ P + D Sbjct: 248 KKKKEDGEILEDFRGKELIGKKYIHPFVNRE-IPIIADDYVDMEFGTGAVHIAPAHGEDD 306 Query: 352 MDFAKKYGLPIIPIMKRSINHSQDIEEGKAFSGDGIMINS-SFLDGMTNTEALQAVMSHL 410 + K++ L I + DG G+ +A + ++ L Sbjct: 307 YEVGKRHNLEFINPVDD----------------DGTYNEEAPEFQGLKRFKARKKIVELL 350 Query: 411 EKQN-------------------------------IKNSPIGK------RKINF------ 427 ++ ++ + + K+ F Sbjct: 351 TEKGLLLKIEPIEHSYPHCWRSGTPIIYRATPQWFVRMKNLAEAALKAVEKVQFVPKWGE 410 Query: 428 --------RLRDWCISRQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPL 479 ++DWCISRQR WG PIP + + G V + + G Sbjct: 411 KRYGNWLENIQDWCISRQRWWGHPIPAWYSKDTGEVYVRGSLKELVAGR---EEEEGIEA 467 Query: 480 ENHPTWKKIFCVKCGSEAL-RETDTMDTFVDS-SWYYMRYMTPHAKDPINKELVRQWFPV 537 H K + G+ L ++ D +DT+ S SW + T E +++FP Sbjct: 468 WLHRDAKDLL--GKGAGTLEQDEDVLDTWFSSGSWP---FSTLGYPFTNTPEF-KRFFPA 521 Query: 538 DQYIGGIEHAVLHLLYARFFAHILKKIG-YIEIDEPFKRLFTQGMVVHETYYQLEGIKKK 596 D + G + R + + + +G + P+K + G+V E +G Sbjct: 522 DMLLEGSDQ-------TRGWFYRMIVLGTALTGSAPYKNVLVHGLVRDE-----QG---- 565 Query: 597 YLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLF 656 KMSKS NVIDP+ VI YGAD RL+ Sbjct: 566 --------------------------------RKMSKSLGNVIDPLDVIDKYGADALRLW 593 Query: 657 VLSDSPPDRDIIWS 670 + S S RDI +S Sbjct: 594 LAS-SDYGRDINFS 606 >gnl|CDD|35654 KOG0433, KOG0433, KOG0433, Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]. Length = 937 Score = 178 bits (452), Expect = 6e-45 Identities = 180/885 (20%), Positives = 302/885 (34%), Gaps = 202/885 (22%) Query: 19 WYDSNIFKAENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPM 78 I ++ ++ F L+ +GN+H+GH N ++ D++ R + A G S L+ Sbjct: 43 IQPPEILSSQLSDQQRVEFELKDA---NGNLHLGHALNKILKDIINRILLAQGKSALYVP 99 Query: 79 GWDAFGMPAE-------NAAREHNVHP-------KMWTYQNIKVMRKQLQSIGLSIDWSK 124 GWD G+P E E + P +++ + IK + + G++ DW Sbjct: 100 GWDCHGLPIESTKALSSLTESEGSRTPLEIRAKARIFADEAIKKQMEAFRRWGVTADWEN 159 Query: 125 DFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQVINGRGWRSDAPV 184 + T Y Q +F + ++ R V W P +T LA ++ + Sbjct: 160 PYVTKSPSYEAAQLDIFAKLYEKGLVYRSFKPVYWSPSSRTALAESEL--------EYND 211 Query: 185 EQRSLPQWF-FKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIRWEIVSNTID 243 +S +F FK+ + S + I Sbjct: 212 NHQSTSAYFRFKLINFSSSAH--------------------------------SEDSKIP 239 Query: 244 QIEEILVYTTRPETIFGASFIAIAVDHSISEKL-SCDNTDIKEFC--------DEEKQKG 294 QI LV+TT P T+ S AI+V+ +I L DN F + EK Sbjct: 240 QIY-ALVWTTTPWTL--PSNNAISVNSAIQYSLVQFDNNPTSTFYLVASKLLEEFEKSSD 296 Query: 295 TSLSVLDKTEKKGIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIFGCPFADQRDMDF 354 ++ T K G KHPL+ + +P+ V GTG + P D Sbjct: 297 RKCKIV-GTVKGANLIGRRYKHPLHNELGLPILEGPHVTDTVGTGLVHTAPAHGFEDYLV 355 Query: 355 AKKYGLPIIPIMK---RSINHSQDIEEGKAFSGDGIMINSSFLDGM-------------- 397 A GL + + + +GK G+G I L+ Sbjct: 356 AISKGLRVESFVDSRGCYTREAGHDLDGKEVLGEGQKIVLRLLNHDIVHVSKYVHSYPYD 415 Query: 398 ----------------TNTEALQ-AVMSHLEKQNI--KNSPIGKRKINFRLRDWCISRQR 438 + E ++ L+ + +S + +++ WCISRQR Sbjct: 416 WRTKKPVIIRASEQWFIDVEEIKKRASMALDDVKVAPGDSDLRLKQLVTTRPSWCISRQR 475 Query: 439 SWGCPIPVIHCQKCGIVELPKEDLPVQLP----EDLDFTLPGNPLENHPTWKKIFCVKCG 494 WG PIP ++ + G E D + E P + Sbjct: 476 VWGVPIPALYDKNGGSYLSNSLIEWHAKLTREQEGSDVWWEIDVEELLPEEEVREIPDIA 535 Query: 495 SEALRETDTMDTFVDS--SWYYMRYMTPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLL 552 SE + TD MD + DS SW + + ++ D Y+ G++ Sbjct: 536 SEYKKGTDIMDVWFDSGSSWSAVL---DNEREH----------VADVYLEGVDQ-----F 577 Query: 553 YARFFAHILKKIGYIEIDEPFKRLFTQGMVVHETYYQLEGIKKKYLKPDEVILRNIEGEN 612 F + +L + P+K++ G + E Sbjct: 578 RGWFQSSLLTSVAVQNK-APYKKVIVHGFTLDENGN------------------------ 612 Query: 613 CAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIK------SYGADTARLFVLSDSPPDRD 666 KMSKS NV+DP V +YGAD R +V + S + Sbjct: 613 -----------------KMSKSLGNVVDPTMVTDGSLKQPAYGADGLRFWV-AGSENTGE 654 Query: 667 IIWSNK---GVDSTYQFIQQIWRLIYNAKDELQTSSTK--------KDISLISKSTKFLE 715 K VD + +R + + K D ++ + ++ Sbjct: 655 SKIGPKILDQVDEKLIKFRNTFRFLLGNLQDFDGKQVKFPLKDLRYIDQYMLQQLDAIVK 714 Query: 716 RIEENYQNLSFNKAVANIHELVNV-ISKPLMEIAKKKSNADRIS---------TIRYILE 765 RI E Y + F K V ++ + + +S +I K + D++ T+ ++L Sbjct: 715 RIIELYNDYKFRKVVNDLQQFLQRNLSAFYFDIVKDRLYCDKVGSESRRSAQTTLHHLLH 774 Query: 766 KLIIMMSPMIPHLAEECWQLL-GNAGLVAQQKWPKLDPILEVNTD 809 L ++SP++PHLAEE WQ L G+ + + KW L L D Sbjct: 775 NLAHIISPILPHLAEEVWQHLPGSHEKIFRLKWEDLHSGLLTPHD 819 >gnl|CDD|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. Length = 382 Score = 140 bits (355), Expect = 1e-33 Identities = 57/201 (28%), Positives = 103/201 (51%), Gaps = 22/201 (10%) Query: 43 PYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAA-REHNVHPKM- 100 P +G++HMGH N I D++AR+ R GY+VL P G D G+ + ++ + K Sbjct: 10 PNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTR 69 Query: 101 --------------WTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMK 146 W ++ +R+QL+ +G S+DWS+++ T D Q F+ + Sbjct: 70 HDLGREEFLEKCWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYE 129 Query: 147 HNVIVRKTAQVNWDPVEQTVLANEQVINGRGWRSDAPVEQRSLPQWFFKISDLSQELLDS 206 +I R VNW P +T +++ +V RS +E PQWF K+ DL+++ L++ Sbjct: 130 KGLIYRDNRLVNWCPKLRTAISDIEV----CSRSGDVIEPLLKPQWFVKVKDLAKKALEA 185 Query: 207 IETLS-EW-PEKVKIMQKNWI 225 ++ ++ PE+++ +NW+ Sbjct: 186 VKEGDIKFVPERMEKRYENWL 206 Score = 98.9 bits (247), Expect = 6e-21 Identities = 65/246 (26%), Positives = 96/246 (39%), Gaps = 77/246 (31%) Query: 429 LRDWCISRQRSWGCPIPVIHCQKCG-IVELPKEDLPVQLPEDLDFTLPGNPLENHPTWKK 487 +RDWCISRQ WG IP +C+ G V +ED + Sbjct: 209 IRDWCISRQLWWGHRIPAWYCKDGGHWVVAREEDEAIDKAAPE----------------- 251 Query: 488 IFCVKCGSEAL-RETDTMDTFVDSSWYYMRYMTPHA--KDPINKELVRQWFPVDQYIGGI 544 CV CG E L ++ D +DT+ SS + P + P + +++++P + G Sbjct: 252 -ACVPCGGEELKQDEDVLDTWFSSS------LWPFSTLGWPEETKDLKKFYPTSLLVTG- 303 Query: 545 EHAVLHLLYARFFAHILKKIGYIEIDE-PFKRLFTQGMVVHETYYQLEGIKKKYLKPDEV 603 H ++ AR I++ G + PFK ++ G+V Sbjct: 304 -HDIIFFWVARM---IMR--GLKLTGKLPFKEVYLHGLV--------------------- 336 Query: 604 ILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPP 663 R+ +G KMSKS NVIDP+ VI YGAD R + S + Sbjct: 337 --RDEDG------------------RKMSKSLGNVIDPLDVIDGYGADALRFTLASAATQ 376 Query: 664 DRDIIW 669 RDI Sbjct: 377 GRDINL 382 >gnl|CDD|35653 KOG0432, KOG0432, KOG0432, Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]. Length = 995 Score = 139 bits (351), Expect = 3e-33 Identities = 181/888 (20%), Positives = 303/888 (34%), Gaps = 226/888 (25%) Query: 2 ETRSYSPQETDSIWQSAWYDSNIFKAENGKNKKKYFVLEMFPYP--SGNIHMGHLRNYVI 59 +YSP +S W W FK E G N FV+ + P P +G++H+GH I Sbjct: 42 LPAAYSPAYVESAWYKWWEKQGFFKPEYGPNPGGVFVIPL-PPPNVTGSLHIGHALTVAI 100 Query: 60 GDVVARFMRASGYSVLHPMGWDAFGMP----------AENAAREHNVH-----PKMWTYQ 104 D +AR+ R GY VL G D G+ E H++ ++W ++ Sbjct: 101 QDALARYNRMHGYQVLWVPGTDHAGIATQVVVEKQLAREGGKTRHDLGREEFLKEVWEWK 160 Query: 105 NIK--VMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPV 162 + QL+ +G S+DW ++ T D F+ + +I R VNW P Sbjct: 161 EEYGGRIYNQLKRLGASLDWDREAFTMDPKLSRAVTEAFVRLHEEGLIYRANRLVNWCPA 220 Query: 163 EQTVLANEQVINGRGWRSDAPVEQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQK 222 ++ + SD VE +P ++ ++ + KV+ Sbjct: 221 LRSAI------------SDIEVESVEIPG-------------RTLLSVPGYDTKVEFGVL 255 Query: 223 NWIGRSEGMEIRWEIVSNTIDQIEEILVYTTRPETIFGASFIAIAVDHSISEKLSCDNTD 282 EEI+V TTRPETI G +A+ D + L Sbjct: 256 Y------------SFAYPVEGSDEEIVVATTRPETILGDVAVAVHPDDDRYKHLH----- 298 Query: 283 IKEFCDEEKQKGTSLSVLDKTEKKGIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIF 342 G VKHP +P+ V M +GTGA+ Sbjct: 299 ----------------------------GKFVKHPFTGR-KLPIICDIAVDMEFGTGAVK 329 Query: 343 GCPFADQRDMDFAKKYGLPIIPIMKRSINHSQDIEEGKAFSGDGIMIN-SSFLDGMTNTE 401 P D D + K++ L I I + DG++ N GM E Sbjct: 330 ITPAHDPNDYEVGKRHNLEFINIF----------------TDDGLLNNVCGEFKGMKRFE 373 Query: 402 ALQAVMSHLEKQN-------------------------------IKNSPIGKRKI----N 426 A + V+ L++ + + K+ + + Sbjct: 374 AREKVVEKLKELGLYVGKENHPMVLPICSRSGDVIEPLLKPQWFVSCKEMAKKALKAVES 433 Query: 427 FRL------------------RDWCISRQRSWGCPIPVIHC--------QKCGIVELPKE 460 +L RDWCISRQ WG IP + +V +E Sbjct: 434 GKLEILPEFHEKEWYRWLENIRDWCISRQLWWGHRIPAYFVNLSDGRAEEDYWVVARSEE 493 Query: 461 DLPVQLPEDLDFTLPGNPLENHPTWKKIFCVKCGSEALRETDTMDTFVDSS-WYYMRYMT 519 + + + PG ++ D +DT+ S W + Sbjct: 494 E---AREKAAEKFGPGKEFTLE----------------QDPDVLDTWFSSGLWPFSTLGW 534 Query: 520 PHA-KDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIGYIEIDEPFKRLFT 578 P KD N ++P+ G H +L AR LK G + PFK + Sbjct: 535 PEETKDFKN------FYPLSLLETG--HDILFFWVARMVMLGLKLTGEL----PFKEVLL 582 Query: 579 QGMVVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNV 638 G+V ++ + P +VI I E +L + + P E K Sbjct: 583 HGLVRDAHGRKMSKSLGNVIDPLDVI-DGISLEKLHAKLLSGN---LDPREVEKAKKGQK 638 Query: 639 IDPMKVIKSYGADTARLFVLSDSPPDRDIIWSNKGVDSTYQFIQQIWRL----------- 687 D I G D R + S + RDI V+ F ++W Sbjct: 639 KDFPNGIPECGTDALRFALCSYTTQGRDINLDVLRVEGYRHFCNKLWNATRFALQRLGEN 698 Query: 688 -IYNAKDELQTSSTKKDISLISKSTKFLERIEENYQNLSFNKAVANIH-----ELVNV-- 739 + + ++L + + D ++S+ + +E + E+ + +F+ A + ++ +L +V Sbjct: 699 FVPSPTEDLSGNESLVDEWILSRLAEAVEEVNESLEARNFHLATSALYAFWLYDLCDVYL 758 Query: 740 -ISKPLMEIAKKKSNADRISTIRYILEKLIIMMSPMIPHLAEECWQLL 786 +KPL+ + + + L+ + ++ P +P + EE WQ L Sbjct: 759 EATKPLLWGDSEALAYEARRVLYRCLDNGLRLLHPFMPFITEELWQRL 806 >gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function. Length = 312 Score = 108 bits (271), Expect = 7e-24 Identities = 49/204 (24%), Positives = 82/204 (40%), Gaps = 42/204 (20%) Query: 35 KYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAR-- 92 K++V PY +G++H+GH ++I D +AR+ R GY V GWD G+P E A Sbjct: 1 KFYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERK 60 Query: 93 -----------EHNVHPKMWTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLF 141 E PK + + ++ + +G+S DWS ++ T + +Y +L+F Sbjct: 61 GGRKKKTIWIEEFREDPKEFVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIF 120 Query: 142 LDFMKHNVIVRKTAQVNWDPVEQTVLANEQVINGRGWRSDAPVEQRSLPQWFFKISDLSQ 201 + +I R R QWFF + + Sbjct: 121 SRLYEKGLIYR-----------------------------GTHPVRITEQWFFDMPKFKE 151 Query: 202 ELLDSIETLSEWPEKVKIMQKNWI 225 +LL ++ PE VK + W+ Sbjct: 152 KLLKALRRGKIVPEHVKNRMEAWL 175 Score = 61.7 bits (150), Expect = 8e-10 Identities = 41/169 (24%), Positives = 58/169 (34%), Gaps = 51/169 (30%) Query: 501 TDTMDTFVDSSWYYMRYMTPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHI 560 D D + DS + + P KE + +P D ++ G + F Sbjct: 195 EDVFDVWFDSGIGPLGSL----GYPEEKEWFKDSYPADWHLIGKDILRGWA----NFWIT 246 Query: 561 LKKIGYIEIDEPFKRLFTQGMVVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDN 620 + + EI P K L G V+ E G+ Sbjct: 247 MLVALFGEI--PPKNLLVHGFVLDE-----------------------GGQ--------- 272 Query: 621 SKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDIIW 669 KMSKSK NVIDP V++ YGAD R ++ S +P DI Sbjct: 273 ---------KMSKSKGNVIDPSDVVEKYGADALRYYLTSLAPYGDDIRL 312 Score = 32.0 bits (73), Expect = 0.71 Identities = 12/17 (70%), Positives = 13/17 (76%) Query: 429 LRDWCISRQRSWGCPIP 445 L DW ISRQR WG P+P Sbjct: 178 LLDWAISRQRYWGTPLP 194 >gnl|CDD|153412 cd07958, Anticodon_Ia_Leu_BEm, Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA. Length = 117 Score = 105 bits (265), Expect = 5e-23 Identities = 40/126 (31%), Positives = 67/126 (53%), Gaps = 17/126 (13%) Query: 669 WSNKGVDSTYQFIQQIWRLIYNAKDELQTSSTKKDISLISKSTKFLER--------IEEN 720 WS+ GV+ Y+F+ ++WRL+ + L + ++S + K L R + E+ Sbjct: 1 WSDSGVEGAYRFLNRVWRLVTELAEALAAPAAAAELS---EEDKELRRKLHKTIKKVTED 57 Query: 721 YQNLSFNKAVANIHELVNVISKPLMEIAKKKSNADRISTIRYILEKLIIMMSPMIPHLAE 780 + L FN A+A + ELVN + K KKK + +R LE L+++++P PH+AE Sbjct: 58 IERLRFNTAIAALMELVNALYK-----YKKKDAQHA-AVLREALETLVLLLAPFAPHIAE 111 Query: 781 ECWQLL 786 E W+ L Sbjct: 112 ELWEEL 117 >gnl|CDD|30492 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]. Length = 558 Score = 101 bits (253), Expect = 8e-22 Identities = 53/227 (23%), Positives = 89/227 (39%), Gaps = 35/227 (15%) Query: 31 KNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENA 90 K KK V PYP+G H+GHL Y+ DV AR++R GY V G D G E Sbjct: 2 KMMKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELK 61 Query: 91 AREHNVHPKMWTYQNIKVMRKQLQSIGLSIDWSKDFA-TCDVDYYHCQQLLFLDFMKHNV 149 A + + P+ +N + ++ +++ +S D +F T ++ Q FL ++ Sbjct: 62 AEKEGITPQELVDKNHEEFKELFKALNISFD---NFIRTTSPEHKELVQEFFLKLYENGD 118 Query: 150 IVRKTAQVNWDPVEQTVLANEQV-----------------------------INGRGWRS 180 I + + + + L + V IN S Sbjct: 119 IYLREYEGLYCVSCERFLPDRYVEGTCPKCGGEDARGDQCENCGRTLDPTELINPVCVIS 178 Query: 181 DAPVEQRSLPQWFFKISDLSQELLDSIETLSE--WPEKVKIMQKNWI 225 A E R +FF++S +LL+ E+ + WP + N++ Sbjct: 179 GATPEVREEEHYFFRLSKFQDKLLEWYESNPDFIWPANRRNEVLNFL 225 Score = 80.7 bits (199), Expect = 2e-15 Identities = 45/203 (22%), Positives = 82/203 (40%), Gaps = 21/203 (10%) Query: 629 EKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDIIWSNKGVDSTYQ--------- 679 +KMSKS+ NV+DP ++++ YG D R ++ + P D +S + Sbjct: 332 QKMSKSRGNVVDPDELLEQYGVDALRYYLARELPEGSDGDFSWEDFVERVNADLANKLGN 391 Query: 680 FIQQIWRLIYNAKD----ELQTSSTKKDISLISKSTKFLERIEENYQNLSFNKAVANIHE 735 + I D ++D L++ + + LE + E + F KA+ I Sbjct: 392 LANRTLGFINKYFDGVVPAAGAPDLEEDEELLALAREALEAVAEAMEKYEFRKALEEIMA 451 Query: 736 LVNVISKPLME----IAKKKSNADRISTIRY----ILEKLIIMMSPMIPHLAEECWQLLG 787 L + +K + E K+ +R++T+ Y ++ L I++ P +P AE+ W LG Sbjct: 452 LASRANKYIDEQAPWKLAKEDKRERLATVLYLALELVRVLAILLYPFMPETAEKIWDQLG 511 Query: 788 NAGLVAQQKWPKLDPILEVNTDI 810 W L + Sbjct: 512 LEEDARNFTWLGARQPLLPGHKL 534 Score = 32.6 bits (74), Expect = 0.52 Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 6/47 (12%) Query: 405 AVMSHLEKQNIKNSPIGKRK--INFR---LRDWCISRQR-SWGCPIP 445 ++ E P +R +NF L+D I+R WG P+P Sbjct: 200 KLLEWYESNPDFIWPANRRNEVLNFLKEGLKDLSITRTDLDWGIPVP 246 >gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function. Length = 319 Score = 88.7 bits (221), Expect = 6e-18 Identities = 46/194 (23%), Positives = 73/194 (37%), Gaps = 22/194 (11%) Query: 35 KYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREH 94 K + PY +G H+GHL V+ DV AR+ R GY VL G D G E A E Sbjct: 1 KVLITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEE 60 Query: 95 NVHPKMWTYQNIKVMRKQLQSIGLSIDWSKDFA-TCDVDYYHCQQLLFLDFMKHNVIVRK 153 V P+ + ++ + + + +S D F T + Q F ++ I Sbjct: 61 GVTPQELCDKYHEIFKDLFKWLNISFD---YFIRTTSPRHKEIVQEFFKKLYENGYIYEG 117 Query: 154 TAQVNWDPVEQTVLANEQVINGRGWRSDAPVEQRSLPQWFFKISDLSQELLDSIET--LS 211 + + + L E R +FF++S LL+ +E Sbjct: 118 EYEGLYCVSCERFLP----------------EWREEEHYFFRLSKFQDRLLEWLEKNPDF 161 Query: 212 EWPEKVKIMQKNWI 225 WPE + +W+ Sbjct: 162 IWPENARNEVLSWL 175 Score = 49.8 bits (120), Expect = 3e-06 Identities = 17/38 (44%), Positives = 27/38 (71%) Query: 629 EKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRD 666 +KMSKS+ NV+DP +++ YGAD R ++L + P +D Sbjct: 279 KKMSKSRGNVVDPDDLLERYGADALRYYLLRERPEGKD 316 Score = 32.5 bits (75), Expect = 0.49 Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 6/47 (12%) Query: 405 AVMSHLEKQNIKNSPIGKRKI---NFR--LRDWCISRQRS-WGCPIP 445 ++ LEK P R + L+D I+R WG P+P Sbjct: 150 RLLEWLEKNPDFIWPENARNEVLSWLKEGLKDLSITRDLFDWGIPVP 196 >gnl|CDD|173909 cd00818, IleRS_core, catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. Length = 338 Score = 87.7 bits (218), Expect = 1e-17 Identities = 47/217 (21%), Positives = 79/217 (36%), Gaps = 56/217 (25%) Query: 34 KKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAE----- 88 ++ + PY +G H GH N ++ D++ R+ GY V GWD G+P E Sbjct: 1 PEFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEK 60 Query: 89 -------------------NAAREHNVHPKMWTYQNIKVMRKQLQSIGLSIDWSKDFATC 129 RE + + +Q Q +G+ +DW + T Sbjct: 61 ELGISGKKDIEKMGIAEFNAKCREF-------ALRYVDEQEEQFQRLGVWVDWENPYKTM 113 Query: 130 DVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQVINGRGWRSDAPVEQRSL 189 D +Y +F + ++ R V W P+ R+ Sbjct: 114 DPEYMESVWWVFKQLHEKGLLYRGYKVVPW-----------------------PLIYRAT 150 Query: 190 PQWFFKISDLSQELLDSIETLSEW-PEKVKIMQKNWI 225 PQWF +++ + LL++ + W PE VK NW+ Sbjct: 151 PQWFIRVTKIKDRLLEANDK-VNWIPEWVKNRFGNWL 186 Score = 86.5 bits (215), Expect = 3e-17 Identities = 62/273 (22%), Positives = 85/273 (31%), Gaps = 107/273 (39%) Query: 404 QAVMSHLEKQNIKNSPIGKRKINF--RLRDWCISRQRSWGCPIPVIHCQKCGIVELPKED 461 ++ +K N + R N+ RDWCISRQR WG PIPV +C+ CG Sbjct: 162 DRLLEANDKVNWIPEWVKNRFGNWLENRRDWCISRQRYWGTPIPVWYCEDCG-------- 213 Query: 462 LPVQLPEDLDFTLPGNPLENHPTWKKIFCVKCGSEALRETDTMDTFVDS--SWYYMRYMT 519 ++ R D +D + DS Y Sbjct: 214 -------------------------EVLVR-------RVPDVLDVWFDSGSMPYAQ---- 237 Query: 520 PHAKDPINKELVRQWFPVDQYIGGIEHA-----VLHLLYARFFAHILKKIGYIEIDEPFK 574 P E + FP D + G + L LL F P+K Sbjct: 238 --LHYPFENEDFEELFPADFILEGSDQTRGWFYSLLLLSTALFGKA-----------PYK 284 Query: 575 RLFTQGMVVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKS 634 + G V+ E +G KMSKS Sbjct: 285 NVIVHGFVLDE-----------------------DGR------------------KMSKS 303 Query: 635 KKNVIDPMKVIKSYGADTARLFVLSDSPPDRDI 667 N +DP +V+ YGAD RL+V S D+ Sbjct: 304 LGNYVDPQEVVDKYGADALRLWVASSDVYAEDL 336 >gnl|CDD|35658 KOG0437, KOG0437, KOG0437, Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]. Length = 1080 Score = 62.0 bits (150), Expect = 6e-10 Identities = 45/185 (24%), Positives = 82/185 (44%), Gaps = 12/185 (6%) Query: 629 EKMSKSKKNVIDPMKVIKSYGADTAR--LFVLSDSPPDRDIIWS--NKGVDSTYQFIQQI 684 EKMSKS N + + I+ +GAD R L D D + + + N + Y +++ I Sbjct: 709 EKMSKSTGNFMTLEQAIEKFGADGTRLALADAGDGVEDANFVEANANAAILRLYTYVEWI 768 Query: 685 WRLIYNAKDELQT--SSTKKDISLISKSTKFLERIEENYQNLSFNKAVAN-IHELVNVIS 741 + N + L+T +ST D ++ + + E Y++ F A+ ++L Sbjct: 769 EEMCEN-RSSLRTGPASTFADRVFENEMNALIAKTERAYEDTLFKDALKYGFYDLQAARD 827 Query: 742 KPLMEIAKKKSNADRISTIRYILEKLIIMMSPMIPHLAEECWQLLGNAGLVAQQKWPKLD 801 E+ + + D + R+I E ++++P+ PHLAE W+ + WP + Sbjct: 828 M-YRELCGEGMHRDLV--FRFI-ETQTLLLAPICPHLAEYIWRTVLKKNFSVNVGWPFVS 883 Query: 802 PILEV 806 P E Sbjct: 884 PPDEK 888 Score = 53.9 bits (129), Expect = 2e-07 Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 8/99 (8%) Query: 3 TRSYSPQETDSIWQSAWYDSNIFKA----ENGKNKKKYFVLEMFPYPSGNIHMGHLRNYV 58 R S E + +Q W +F+ E K+K K+FV +PY +G +H+GH + Sbjct: 9 ARRDSLLEIEKKYQKKWDTEKVFEVDAPNELQKSKPKFFVTFPYPYMNGRLHLGHAFSLS 68 Query: 59 IGDVVARFMRASGYSVLHPMGWDAFGMP----AENAARE 93 + + + R G +VL P G+ GMP A+ RE Sbjct: 69 KVEFASGYERLQGKNVLFPFGFHCTGMPIKASADKLKRE 107 Score = 31.1 bits (70), Expect = 1.3 Identities = 15/38 (39%), Positives = 21/38 (55%) Query: 98 PKMWTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYH 135 PK W Y + + L+ GL IDW + F T DV+ Y+ Sbjct: 177 PKHWLYYFPPLCERDLKRFGLGIDWRRSFITTDVNPYY 214 >gnl|CDD|153414 cd07960, Anticodon_Ia_Ile_BEm, Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA. Length = 180 Score = 61.4 bits (150), Expect = 1e-09 Identities = 25/111 (22%), Positives = 51/111 (45%), Gaps = 13/111 (11%) Query: 707 ISKSTKFLERIEENYQNLSFNKAVANIHELVNVISKPL-MEIAK------KKSNADRIS- 758 + + + ++ + E Y+N F+K ++ V ++I K K + +R S Sbjct: 50 LHRLNELIKEVREAYENYEFHKVYQALNNFCTVDLSAFYLDIIKDRLYCDAKDSLERRSA 109 Query: 759 --TIRYILEKLIIMMSPMIPHLAEECWQLLGNAGL---VAQQKWPKLDPIL 804 + +IL+ L+ +++P++P AEE W+ L V + WP+L Sbjct: 110 QTVLYHILDALLKLLAPILPFTAEEVWEHLPGEKKEESVFLEDWPELPEEW 160 >gnl|CDD|35655 KOG0434, KOG0434, KOG0434, Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]. Length = 1070 Score = 53.8 bits (129), Expect = 2e-07 Identities = 87/408 (21%), Positives = 143/408 (35%), Gaps = 123/408 (30%) Query: 430 RDWCISRQRSWGCPIPV--------IHCQKCGIVELPKEDLPVQLPEDL------DFTLP 475 RDW ISR R WG PIP+ + C I EL E+L DL T+P Sbjct: 454 RDWNISRNRYWGTPIPLWVSDDYEEVVCIG-SIKEL--EELSGVKITDLHRESIDHITIP 510 Query: 476 GNPLENHPTWKKIFCVKCGSEALRE-TDTMDTFVDSSWYYMRYMTPHAKDPI-NKELVRQ 533 K G L ++ D + +S M Y H P NKE + Sbjct: 511 S---------------KKGKGVLHRVSEVFDCWFESG--SMPYAQRHY--PFENKEEFEE 551 Query: 534 WFPVDQYIGGIEHA-----VLHLLYARFFAHILKKIGYIEIDEPFKRLFTQGMVVHETYY 588 FP D G++ L +L F PFK + G+V+ E Sbjct: 552 NFPADFIAEGLDQTRGWFYTLLVLSTALFGKP-----------PFKNVIVNGLVLAE--- 597 Query: 589 QLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSY 648 +G+ KMSK KN DP +I Y Sbjct: 598 --------------------DGK------------------KMSKRLKNYPDPSLIINKY 619 Query: 649 GADTARLFVLSDSPPDR--DIIWSNKGVD-----------STYQF-IQQIWRL-----IY 689 GAD RL++++ SP R ++ + +GV ++Y+F +Q L Sbjct: 620 GADALRLYLIN-SPVVRAENLKFKEEGVREVVKDVLLPWYNSYRFLVQNAALLKKETGKD 678 Query: 690 NAKDELQTSSTKKDISLISKSTKFLERIEENYQNLSFNKAVANIHELVNVISKPLMEIAK 749 D+ TSS D +++ + + + E V + + ++ ++ + + Sbjct: 679 FVFDDSVTSSNVMDRWILASTQSLVGFVREEMDQYRLYTVVPRLLKFIDELTNWYIRFNR 738 Query: 750 KKSNADR--------ISTIRYILEKLIIMMSPMIPHLAEECWQLLGNA 789 ++ + ++ + +L L+ +M+P P E +Q L Sbjct: 739 RRLKGENGEHDCHNALNVLFEVLFTLVRVMAPFTPFFTEYIYQNLKKY 786 Score = 52.3 bits (125), Expect = 6e-07 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 3/84 (3%) Query: 8 PQETDSIWQSAWYDSNIFKA--ENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVAR 65 P+E + + + W + + F + K + K+ + P+ +G H GH+ I D+V R Sbjct: 11 PKEEEKVLE-FWREIDAFHTSLKLSKGRPKFTFYDGPPFATGLPHYGHILASTIKDIVTR 69 Query: 66 FMRASGYSVLHPMGWDAFGMPAEN 89 + +G+ V GWD G+P E Sbjct: 70 YATQTGHHVERRFGWDTHGLPVEY 93 Score = 43.0 bits (101), Expect = 3e-04 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 3/50 (6%) Query: 178 WRSDAPVEQRSLPQWFFKISDLSQELLDSIETLSEW-PEKVKIMQ-KNWI 225 WRSD P+ R++P WF ++ ++ +LL + + W P+ +K + NW+ Sbjct: 402 WRSDTPLIYRAVPSWFVRVKNIVDQLLRNNM-KTHWVPQNIKEKRFANWL 450 >gnl|CDD|30564 COG0215, CysS, Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]. Length = 464 Score = 52.9 bits (127), Expect = 3e-07 Identities = 32/155 (20%), Positives = 67/155 (43%), Gaps = 8/155 (5%) Query: 629 EKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDIIWSNKGVDSTYQFIQQIWRLI 688 EKMSKS N I ++K Y + RLF+LS S + +S + ++ + +++++ + Sbjct: 267 EKMSKSLGNFITVRDLLKKYDPEVLRLFLLS-SHYRSPLDFSEELLEEAKKALERLYNAL 325 Query: 689 YNAKDELQTSSTKKDISLISKSTKFLERIEENYQNLSFNKAVANIHELVNVISKPLMEIA 748 +D + + +F E +++ + + KA+A + EL I++ L E Sbjct: 326 RRLRDLAGDAELADLKEFEA---RFREALDD---DFNTPKALAVLFELAKEINRLLEEGK 379 Query: 749 KKKSN-ADRISTIRYILEKLIIMMSPMIPHLAEEC 782 + + IL ++ + P +E Sbjct: 380 SDAKAVLSALKALLAILGLKVLGLFPQSGAQEDES 414 Score = 43.3 bits (102), Expect = 3e-04 Identities = 19/76 (25%), Positives = 33/76 (43%) Query: 43 PYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWT 102 P H+GH R YV+ DV+ R++R GY V + N ARE + + Sbjct: 30 PTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDIDDKIINRAREEGLSIREVA 89 Query: 103 YQNIKVMRKQLQSIGL 118 + I + + ++ + Sbjct: 90 ERYIAAFFEDMDALNV 105 >gnl|CDD|153416 cd07962, Anticodon_Ia_Val, Anticodon-binding domain of valyl tRNA synthetases. This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA. Length = 135 Score = 51.4 bits (124), Expect = 9e-07 Identities = 27/127 (21%), Positives = 55/127 (43%), Gaps = 23/127 (18%) Query: 680 FIQQIW---RLI------YNAKDELQTSSTKKDISLISKSTKFLERIEENYQNLSFNKAV 730 F ++W R + + +E S + D ++S+ K +E + E +N F++A Sbjct: 12 FCNKLWNAARFVLMNLEDDDEPEEDPESLSLADRWILSRLNKTVEEVTEALENYRFSEAA 71 Query: 731 ANIHELV-NV-------ISKPLMEIAKKKSNADRISTIR---YILEKLIIMMSPMIPHLA 779 ++E N + KP + ++ + Y+LE ++ ++ P +P + Sbjct: 72 TALYEFFWNDFCDWYLELVKP---RLYGEDEEEKKAARATLYYVLETILRLLHPFMPFIT 128 Query: 780 EECWQLL 786 EE WQ L Sbjct: 129 EELWQRL 135 >gnl|CDD|35657 KOG0436, KOG0436, KOG0436, Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]. Length = 578 Score = 50.4 bits (120), Expect = 2e-06 Identities = 40/186 (21%), Positives = 67/186 (36%), Gaps = 31/186 (16%) Query: 630 KMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDIIWSNKGVDSTYQFIQQIWR--- 686 KMSKS NV+DP ++++ YG D R F+L + D + + + + Sbjct: 344 KMSKSLGNVVDPFELVQKYGVDAVRYFLLREGELGND---GDYSEEKLIKIVNAHLANTL 400 Query: 687 ------------LIYNAKDELQTSSTK---KDISLISKSTKFLERIEENYQNLSFNKAVA 731 I N + L S + L+ K E NY N S A+ Sbjct: 401 GNLLNRCLGKKLNISNCESTLVVDSPTVAAEGEPLVDTVEKLPEVAATNYDNFSLYSALE 460 Query: 732 NIHELVNVISKPLMEIAKKKSNADR----------ISTIRYILEKLIIMMSPMIPHLAEE 781 + + N + + + A K D + I +L + I++ P+ P L+ Sbjct: 461 AVLSIGNAGNTLVQQRAPWKLFKDSQVSAEELAKVLHIILEVLRVIGILLQPVAPSLSLR 520 Query: 782 CWQLLG 787 LG Sbjct: 521 LLSQLG 526 Score = 40.0 bits (93), Expect = 0.003 Identities = 20/88 (22%), Positives = 40/88 (45%) Query: 34 KKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAARE 93 + + + Y + H+GHL + ++ D +ARF R G V+ G D G+ + AA Sbjct: 39 ETFVLTTPIFYVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAAT 98 Query: 94 HNVHPKMWTYQNIKVMRKQLQSIGLSID 121 + +P + + R+ + G++ Sbjct: 99 NGRNPPELCDRISQSFRQLWKDAGIAYT 126 >gnl|CDD|30368 COG0018, ArgS, Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]. Length = 577 Score = 49.5 bits (118), Expect = 4e-06 Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 3/46 (6%) Query: 30 GKNKKKYFVLEMF-PYPSGNIHMGHLRNYVIGDVVARFMRASGYSV 74 GK KK V+E P+G +H+GHLRN +IGD +AR + GY V Sbjct: 114 GKGKK--VVIEYSSANPTGPLHIGHLRNAIIGDSLARILEFLGYDV 157 >gnl|CDD|185675 cd00671, ArgRS_core, catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine. Length = 212 Score = 47.9 bits (115), Expect = 1e-05 Identities = 16/33 (48%), Positives = 22/33 (66%) Query: 43 PYPSGNIHMGHLRNYVIGDVVARFMRASGYSVL 75 P+G +H+GHLRN +IGD +AR + GY V Sbjct: 9 ANPTGPLHVGHLRNAIIGDSLARILEFLGYDVT 41 >gnl|CDD|153413 cd07959, Anticodon_Ia_Leu_AEc, Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA. Length = 117 Score = 46.8 bits (112), Expect = 2e-05 Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 15/125 (12%) Query: 669 WSNKGVDST-------YQFIQQIWRLIYNAKDELQTSSTKKDISLISKSTKFLERIEENY 721 + + +S Y+ +++ + EL T D L+S+ + ++ E Y Sbjct: 1 FREEEANSAILRLERFYELAEEL----IETEGEL-EELTFIDRWLLSRLNRLIKETTEAY 55 Query: 722 QNLSFNKAVANIHELVNVISKPLMEIAKKKSNADRISTIRYILEKLIIMMSPMIPHLAEE 781 +N+ F +A + E + + L ++ +R +E +++P PHLAEE Sbjct: 56 ENMQFREA---LKEGLYELQNDLDWYRERGGAGMNKDLLRRFIEVWTRLLAPFAPHLAEE 112 Query: 782 CWQLL 786 W L Sbjct: 113 IWHEL 117 >gnl|CDD|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Length = 143 Score = 45.5 bits (108), Expect = 5e-05 Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 4/105 (3%) Query: 43 PYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWT 102 P+G +H+GHLR V D +A+ R GY V D G + A + + K + Sbjct: 6 ITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKKGENAKAFV 65 Query: 103 YQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKH 147 + I+ +++ + + DF + L D + H Sbjct: 66 ERWIERIKEDV---EYMFLQAADFLL-LYETECDIHLGGSDQLGH 106 >gnl|CDD|153415 cd07961, Anticodon_Ia_Ile_ABEc, Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA. Length = 183 Score = 43.7 bits (104), Expect = 2e-04 Identities = 29/156 (18%), Positives = 54/156 (34%), Gaps = 25/156 (16%) Query: 667 IIWSNKGVDSTYQFIQQ---IWRLIYNAKDELQTSSTKKDISLISKSTKFLERIEENYQN 723 + N Y+F + D+ S D ++S+ ++ + E + Sbjct: 15 LPLWN-----AYRFFVTYANLDGFDPGKDDDAVASLNVLDRWILSRLNSLIKEVTEEMEA 69 Query: 724 LSFNKAVANIHELVNV-------ISKPLM---EIAKKKSNADRISTIRYILEKLIIMMSP 773 AV + E ++ ++ E K A +T+ +L L +M+P Sbjct: 70 YDLYTAVRALLEFIDELTNWYIRRNRKRFWGEEGDDDKLAA--YATLYEVLLTLSRLMAP 127 Query: 774 MIPHLAEECWQLLGNAGLVAQ-----QKWPKLDPIL 804 P + EE +Q L A WP++D L Sbjct: 128 FTPFITEEIYQNLRRELGDAPESVHLLDWPEVDESL 163 >gnl|CDD|173899 cd00672, CysRS_core, catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Length = 213 Score = 43.0 bits (102), Expect = 4e-04 Identities = 13/36 (36%), Positives = 19/36 (52%) Query: 43 PYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPM 78 P H+GH R YV+ DV+ R++ GY V + Sbjct: 28 PTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQ 63 Score = 36.8 bits (86), Expect = 0.023 Identities = 14/31 (45%), Positives = 17/31 (54%) Query: 629 EKMSKSKKNVIDPMKVIKSYGADTARLFVLS 659 EKMSKS N I +K Y + RL +LS Sbjct: 173 EKMSKSLGNFITVRDALKKYDPEVLRLALLS 203 >gnl|CDD|144375 pfam00750, tRNA-synt_1d, tRNA synthetases class I (R). Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only arginyl tRNA synthetase. Length = 345 Score = 42.8 bits (101), Expect = 4e-04 Identities = 18/45 (40%), Positives = 26/45 (57%) Query: 31 KNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVL 75 KK V P P+ IH+GHLR+ +IGD ++R + GY V+ Sbjct: 16 LENKKVVVEFSSPNPAKPIHVGHLRSTIIGDALSRLLEFLGYDVV 60 >gnl|CDD|153411 cd07957, Anticodon_Ia_Met, Anticodon-binding domain of methionyl tRNA synthetases. This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA. Length = 129 Score = 41.7 bits (99), Expect = 8e-04 Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 16/102 (15%) Query: 697 TSSTKKDISLISKSTKFLERIEENYQNLSFNKAVANIHELVNVI------SKP--LMEIA 748 T++D L+ ++ + LE + E + L F KA+ I EL + P L Sbjct: 32 GGLTEEDEELLEEAEELLEEVAEAMEELEFRKALEEIMELARAANKYIDETAPWKL---- 87 Query: 749 KKKSNADRISTIRY----ILEKLIIMMSPMIPHLAEECWQLL 786 K+ + +R++T+ Y +L L I++SP +P AE+ L Sbjct: 88 AKEEDPERLATVLYVLLELLRILAILLSPFMPETAEKILDQL 129 >gnl|CDD|110410 pfam01406, tRNA-synt_1e, tRNA synthetases class I (C) catalytic domain. This family includes only cysteinyl tRNA synthetases. Length = 301 Score = 39.2 bits (92), Expect = 0.005 Identities = 12/26 (46%), Positives = 18/26 (69%) Query: 49 IHMGHLRNYVIGDVVARFMRASGYSV 74 H+GH R+ V DV+ R+++A GY V Sbjct: 23 SHIGHARSAVAFDVLRRYLQALGYDV 48 Score = 31.5 bits (72), Expect = 1.1 Identities = 14/31 (45%), Positives = 17/31 (54%) Query: 629 EKMSKSKKNVIDPMKVIKSYGADTARLFVLS 659 EKMSKS N + V+K Y R F+LS Sbjct: 252 EKMSKSLGNFLTIRDVLKRYDPRILRYFLLS 282 >gnl|CDD|39627 KOG4426, KOG4426, KOG4426, Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]. Length = 656 Score = 38.8 bits (90), Expect = 0.007 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 4/57 (7%) Query: 33 KKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVL---HPMGWDA-FGM 85 K+ V P + +H+GHLR+ +IGD + R + SG VL H W FGM Sbjct: 187 VKRVLVDFSSPNIAKEMHVGHLRSTIIGDSLCRLLEFSGVDVLRRNHVGDWGTQFGM 243 >gnl|CDD|173900 cd00674, LysRS_core_class_I, catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity. Length = 353 Score = 38.5 bits (90), Expect = 0.008 Identities = 18/53 (33%), Positives = 30/53 (56%) Query: 31 KNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAF 83 + K+ +V+ PSG+IH+G+ R + D+VAR +R G+ V WD + Sbjct: 15 RKGKEKYVVASGISPSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDY 67 >gnl|CDD|37218 KOG2007, KOG2007, KOG2007, Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]. Length = 586 Score = 37.7 bits (87), Expect = 0.013 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 1/68 (1%) Query: 629 EKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDIIWSNKGVDSTYQFIQQIWRLI 688 EKMSKS KN I + +K Y RL L + +S+ ++ Q + + Sbjct: 304 EKMSKSLKNFITIKEALKKYSPRQLRLAFLLHQWRS-PLDYSDSTMEQALQLEKSLNNFF 362 Query: 689 YNAKDELQ 696 + K L+ Sbjct: 363 LDVKALLR 370 Score = 30.7 bits (69), Expect = 1.7 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%) Query: 50 HMGHLRNYVIGDVVARFMRAS-GYSVLHPMG 79 HMGH R+YV D++ R +R GY V M Sbjct: 70 HMGHARSYVSFDILRRILRDYFGYDVTFVMN 100 >gnl|CDD|31574 COG1384, LysS, Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]. Length = 521 Score = 35.2 bits (81), Expect = 0.080 Identities = 14/37 (37%), Positives = 18/37 (48%) Query: 45 PSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWD 81 PSG IH+G+ R + D V R +R G V D Sbjct: 29 PSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISD 65 >gnl|CDD|36409 KOG1195, KOG1195, KOG1195, Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]. Length = 567 Score = 34.9 bits (80), Expect = 0.11 Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 10/80 (12%) Query: 11 TDSIWQSAWYDSNIF-KAENGKNKKKYFVLEMFPYPSGNI----HMGHLRNYVIGDVVAR 65 S+ + K E G KK V+E + S NI H+GHLR+ +IG+ +A Sbjct: 87 IKSVLPIIEEQREKYGKNELGSGKK--IVVE---FSSPNIAKPFHVGHLRSTIIGNFLAN 141 Query: 66 FMRASGYSVLHPMGWDAFGM 85 A G+ V +G Sbjct: 142 LHEALGWEVTRVNYLGDWGK 161 >gnl|CDD|145212 pfam01921, tRNA-synt_1f, tRNA synthetases class I (K). This family includes only lysyl tRNA synthetases from prokaryotes. Length = 355 Score = 34.1 bits (79), Expect = 0.18 Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 8/58 (13%) Query: 45 PSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAF--------GMPAENAAREH 94 PSG H+G+ R + D V R +R G+ D +P ++ Sbjct: 29 PSGLPHIGNFREVLRTDAVRRALRKRGFETRLIYFSDDMDGLRKVPDNVPNSEMLEKY 86 >gnl|CDD|36461 KOG1247, KOG1247, KOG1247, Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]. Length = 567 Score = 33.0 bits (75), Expect = 0.40 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%) Query: 32 NKKKYFVLEMFPYPSGNIHMGHLRNYVI-GDVVARFMRASGYSVLHPMGWDAFGMPAENA 90 N++ + PY + H+G++ V+ DV AR+ G + L+ G D +G E Sbjct: 12 NERNILITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETK 71 Query: 91 AREHNVHPK 99 A E + P+ Sbjct: 72 ALEEGLTPQ 80 >gnl|CDD|32035 COG1850, RbcL, Ribulose 1,5-bisphosphate carboxylase, large subunit [Carbohydrate transport and metabolism]. Length = 429 Score = 31.4 bits (71), Expect = 1.2 Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 23/72 (31%) Query: 41 MFPYPSGNIHMGHLRNYVIGDVVARF-----MRASGYSVLHPMG-----------WDAF- 83 +FP SG IH G + ++V F ++A G HP G +A Sbjct: 347 VFPVASGGIHPGM-----MPELVRIFGKDLVIQAGGGVHGHPDGPAAGARAVRQAIEAAV 401 Query: 84 -GMPAENAAREH 94 G+P A+ H Sbjct: 402 EGIPLREYAKWH 413 >gnl|CDD|173977 cd08212, RuBisCO_large_I, Ribulose bisphosphate carboxylase large chain, Form I. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form I is the most abundant class, present in plants, algae, and bacteria, and forms large complexes composed of 8 large and 8 small subunits. Length = 450 Score = 30.5 bits (69), Expect = 2.3 Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 7/55 (12%) Query: 42 FPYPSGNIHMGH---LRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAARE 93 P SG IH+G L DVV +F G ++ HP G A G A A E Sbjct: 352 MPVASGGIHVGQMHQLIEIFGDDVVLQF---GGGTIGHPWG-IAAGATANRVALE 402 >gnl|CDD|32470 COG2316, COG2316, Predicted hydrolase (HD superfamily) [General function prediction only]. Length = 212 Score = 30.0 bits (67), Expect = 3.2 Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 12/84 (14%) Query: 466 LPEDLDFTLPGNPLENHPTWKKIFCVKCGSEALRETDTMDTFVDSSWYYMRYMTPHAKDP 525 L D D+ L E H W G E LRE D + +D+ + Y + Sbjct: 78 LLHDFDYELTQGDPEEHGLW--------GVEILREEDVSEEILDAIMGHAAYTGTPRETR 129 Query: 526 INKELVRQWFPVDQYIGGIEHAVL 549 + + L F VD+ G I+ A L Sbjct: 130 LEQAL----FAVDELTGLIQAAAL 149 >gnl|CDD|173971 cd08206, RuBisCO_large_I_II_III, Ribulose bisphosphate carboxylase large chain, Form I,II,III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubico-like proteins (RLP), are missing critical active site residues. Length = 414 Score = 29.5 bits (67), Expect = 3.8 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 19/70 (27%) Query: 41 MFPYPSGNIHMGHLR---NYVIGDVVARFMRASGYSVLHPMG-----------WDAF--G 84 +FP SG +H G + + DV+ ++ G + HP G +A+ G Sbjct: 338 VFPVASGGLHPGRMPALIEILGDDVI---LQFGGGTHGHPDGPAAGAKANRQALEAWVQG 394 Query: 85 MPAENAAREH 94 A+ H Sbjct: 395 RILREYAKTH 404 >gnl|CDD|63887 cd03556, L-fucose_isomerase, L-fucose isomerase (FucIase); FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose during glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in blood group determinants as well as in various oligo- and polysaccharides, and glycosides in mammals, bacteria and plants.. Length = 584 Score = 29.2 bits (65), Expect = 4.5 Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 11/89 (12%) Query: 9 QETDSIWQSAWYDSNIFKAENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMR 68 + TD W + W+ + G K Y V+ + G I GH+ +I +A +R Sbjct: 487 KRTDPTWPTTWFAPRL--TGKGAFKDVYDVMNNWGANHGAITHGHIGADLI--TLASMLR 542 Query: 69 -------ASGYSVLHPMGWDAFGMPAENA 90 + P W+AFGM E A Sbjct: 543 IPVCMHNVPEEKIFRPNAWNAFGMDLEGA 571 >gnl|CDD|36092 KOG0874, KOG0874, KOG0874, Sphingolipid hydroxylase [Lipid transport and metabolism]. Length = 287 Score = 28.8 bits (64), Expect = 6.8 Identities = 13/46 (28%), Positives = 20/46 (43%) Query: 565 GYIEIDEPFKRLFTQGMVVHETYYQLEGIKKKYLKPDEVILRNIEG 610 GY +PF+ F H+ ++QL G K + +P I G Sbjct: 216 GYWLPGDPFQMFFPNNAAYHDIHHQLYGTKYNFSQPFFTFWDRILG 261 >gnl|CDD|33087 COG3276, SelB, Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]. Length = 447 Score = 28.8 bits (64), Expect = 7.0 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 4/62 (6%) Query: 567 IEIDEPFKRLFTQGMVVH--ETYYQLEGIKKKYLKPDEVILR--NIEGENCAFRLSDNSK 622 +EID FK+ QG VH + G K E+ L G+N L DNS Sbjct: 268 LEIDPLFKKTLKQGQPVHIHVGLRSVTGRIVPLEKNAELNLVKPIALGDNDRLVLRDNSA 327 Query: 623 VV 624 V+ Sbjct: 328 VI 329 >gnl|CDD|36520 KOG1306, KOG1306, KOG1306, Ca2+/Na+ exchanger NCX1 and related proteins [Inorganic ion transport and metabolism, Signal transduction mechanisms]. Length = 596 Score = 28.8 bits (64), Expect = 7.4 Identities = 13/68 (19%), Positives = 32/68 (47%), Gaps = 4/68 (5%) Query: 189 LPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIRWEIVSNTIDQIEEI 248 LP F +S ++ + SIE ++ +V +++ G +R + + T+ + + Sbjct: 35 LPYAFLGVSIIADRFMASIEVITSASREVIVIKPT--GEESTTYVR--VWNETVSNLTLM 90 Query: 249 LVYTTRPE 256 + ++ PE Sbjct: 91 ALGSSAPE 98 >gnl|CDD|30594 COG0245, IspF, 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Lipid metabolism]. Length = 159 Score = 28.6 bits (64), Expect = 7.6 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 7/63 (11%) Query: 663 PDRDIIWSNKGVDSTYQFIQQIWRLIYNAKDELQTSSTKKDISLISKSTKFLERIEENYQ 722 PD D W KG DS +++ L+ E DI++I++ K E Sbjct: 62 PDTDPRW--KGADSR-ILLKEAVELV----REKGYRIGNVDITIIAQRPKLGPYREAMRA 114 Query: 723 NLS 725 N++ Sbjct: 115 NIA 117 >gnl|CDD|31391 COG1198, PriA, Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]. Length = 730 Score = 28.4 bits (63), Expect = 9.4 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 11/60 (18%) Query: 445 PVIHCQKCG-IVELPKEDLPVQLPEDLDFTLPGNPLE----NHPTWKKIFCVKCGSEALR 499 P++ C+ CG I E P D P+ L + L + C +CGSE LR Sbjct: 434 PLLLCRDCGYIAECPNCDSPLTLHKA------TGQLRCHYCGYQEPIPQSCPECGSEHLR 487 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.320 0.136 0.415 Gapped Lambda K H 0.267 0.0585 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 11,017,970 Number of extensions: 610940 Number of successful extensions: 1552 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1488 Number of HSP's successfully gapped: 109 Length of query: 869 Length of database: 6,263,737 Length adjustment: 102 Effective length of query: 767 Effective length of database: 4,059,619 Effective search space: 3113727773 Effective search space used: 3113727773 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 62 (28.0 bits)